Citrus Sinensis ID: 018265

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEccccccHHHccccccccccEEEEcccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccHHHHHHHHcHHccccHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MQQPTSGANQRIARIAahlhpptlqiegessglgrmdcrakggspgfKVAVLGaaggigqplAMLMKINPLVSVLHLYdvvntpgvtadishmdtnAVVRGFLGQQQLedaltgmdiviipagvprkpgmtrddlfnINAGIVKTLCEGIAKCCPKAIVNlisnpvnstvPIAAEVFkkvgtydpkrllGVTMLDVVRANTFVAEVlgldprevdvpvvgghagvTILPllsqvkpscsltpteiDYLTDriqnggtevveaktgagsaTLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGieeiyslgplneyeRAGLEKAKKELAGSIQKGVSFVRK
Flexible Loop (DISEMBL)
MQQPTSGANQRIARiaahlhpptlQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAevlgldprevdVPVVGGHAGVTilpllsqvkpsCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEiyslgplnEYERAGLEKAKKElagsiqkgvsfvrk
Low Complexity Region (SEG)
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
Disordered region (IsUnstruct)
********************************************PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE************************
Disordered Region (DISOPRED)
************************************************VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR*
Disordered Region (DISEMBL)
**********RIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
Disordered Region (DISPRO)
*********QRIARIAAHLHPPTLQIEGESSG*G*MDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
P19446	356	Malate dehydrogenase, gly	N/A	no	0.988	0.994	0.881	0.0
P46488	356	Malate dehydrogenase, gly	N/A	no	0.988	0.994	0.873	1e-180
O82399	354	Probable malate dehydroge	yes	no	0.977	0.988	0.843	1e-173
P37228	353	Malate dehydrogenase, gly	yes	no	0.983	0.997	0.834	1e-171
Q42972	356	Malate dehydrogenase, gly	yes	no	0.966	0.971	0.841	1e-170
Q9ZP05	354	Malate dehydrogenase, gly	no	no	0.972	0.983	0.840	1e-166
Q9XFW3	358	Malate dehydrogenase 2, g	N/A	no	0.980	0.980	0.835	1e-165
Q43743	358	Malate dehydrogenase 1, g	N/A	no	0.980	0.980	0.826	1e-163
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	0.891	0.935	0.661	1e-119
P17783	347	Malate dehydrogenase, mit	N/A	no	0.868	0.896	0.675	1e-119

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/355 (88%), Positives = 329/355 (92%), Gaps = 1/355 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
            VTELPFFASKVRLGR GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  631 bits (1627), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 310/355 (87%), Positives = 329/355 (92%), Gaps = 1/355 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI+YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA+V+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
            VTELPFFA+KVRLGR GI+E+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct: 301 QVTELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  609 bits (1570), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/351 (84%), Positives = 322/351 (91%), Gaps = 1/351 (0%)

Query: 9   NQRIARIAAHLHPPTLQIE-GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
           NQRIARI+AHL+PP L  +  + SGL R+ CRAKGGSPGFKVA+LGAAGGIGQPLAMLMK
Sbjct: 4   NQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMK 63

Query: 68  INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
           +NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRK
Sbjct: 64  MNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRK 123

Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           PGMTRDDLFNINAGIV+TL E IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK GT+DPK+
Sbjct: 124 PGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKK 183

Query: 188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
           L+GVTMLDVVRANTFVAEV+ LDPREV+VPVVGGHAGVTILPLLSQVKP CS T  EI+Y
Sbjct: 184 LMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEY 243

Query: 248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTEL 307
           LTDRIQNGGTEVVEAK GAGSATLSMAYAA +FADACLRGLRGDA ++ECAYVAS VTEL
Sbjct: 244 LTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVTEL 303

Query: 308 PFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
           PFFASKVRLGR GI+E+Y LGPLNEYER GLEKAKKEL+ SI KGV+F +K
Sbjct: 304 PFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  602 bits (1551), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/356 (83%), Positives = 319/356 (89%), Gaps = 4/356 (1%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           +  SGA+ RI+RIA HL P   Q E +   L R DCRAKGG  GFKVA+LGAAGGIGQPL
Sbjct: 2   EANSGASDRISRIAGHLRP---QREDDVC-LKRSDCRAKGGVSGFKVAILGAAGGIGQPL 57

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVS+LHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDAL GMD+VIIPA
Sbjct: 58  AMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPA 117

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIVKTLCE IAKCCPKAIVN+ISNPVNSTVPIAAEVFK+ GT
Sbjct: 118 GVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGT 177

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLG+DPR+VDVPVVGGHAG+TILPLLSQ+KP CS TP
Sbjct: 178 YDPKRLLGVTMLDVVRANTFVAEVLGVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTP 237

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI+YLT RIQNGG EVVEAK GAGSATLSMAYAA KFADACL  LRGDAG+IECAYVAS
Sbjct: 238 KEIEYLTGRIQNGGPEVVEAKAGAGSATLSMAYAAVKFADACLHALRGDAGIIECAYVAS 297

Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
            VTELPFFASKVRLGR G+EEI  LGPLN+YER  LEKAKKELA SI+KG+SF+RK
Sbjct: 298 QVTELPFFASKVRLGRVGVEEILPLGPLNDYERESLEKAKKELAASIEKGISFIRK 353

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  596 bits (1536), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 292/347 (84%), Positives = 318/347 (91%), Gaps = 1/347 (0%)

Query: 12  IARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL 71
           + R+A+HL PP  Q+E ES  L   +CRAKG +PGFKVA+LGA+GGIGQPLA+LMK+NPL
Sbjct: 11  MERLASHLRPPASQME-ESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPL 69

Query: 72  VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMT 131
           VSVLHLYDVVNTPGVTADISHM+T AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRKPGMT
Sbjct: 70  VSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMT 129

Query: 132 RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
           RDDLFNINAGIV+TLCEGIAKCCP AIVN+ISNPVNSTVPIAAEVFKK GTYDPKRLLGV
Sbjct: 130 RDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGV 189

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LDVVRANTFVAEVLGLDPR+V+VPV+GGHAGVTILPLLSQV P CS T  EI YLT R
Sbjct: 190 TTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTR 249

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFA 311
           IQNGGTEVVEAK GAGSATLSMAYAA+KFADACLRGLRGDAG++EC++VAS VTELPFFA
Sbjct: 250 IQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVTELPFFA 309

Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
           SKVRLGR GIEEI SLGPLNE+ERAGLEKAKKELA SIQKGV+F+ K
Sbjct: 310 SKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK 356

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1

 Score =  585 bits (1507), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 295/351 (84%), Positives = 321/351 (91%), Gaps = 3/351 (0%)

Query: 8   ANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
           ANQRIARI+AHL P   Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK
Sbjct: 7   ANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMK 63

Query: 68  INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
           +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRK
Sbjct: 64  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           PGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDPK+
Sbjct: 124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query: 188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
           LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP EI+Y
Sbjct: 184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

Query: 248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTEL 307
           LT+RIQNGGTEVVEAK GAGSATLSMAYAAAKFADACLRGLRGDA V+EC++VAS VTEL
Sbjct: 244 LTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQVTEL 303

Query: 308 PFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
            FFA+KVRLGR G EE+Y LGPLNEYER GLEKAK ELAGSIQKGV F+RK
Sbjct: 304 AFFATKVRLGRTGAEEVYQLGPLNEYERIGLEKAKDELAGSIQKGVEFIRK 354

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 294/352 (83%), Positives = 322/352 (91%), Gaps = 1/352 (0%)

Query: 8   ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLM 66
           AN+RIA I+AHL P  T Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LM
Sbjct: 7   ANKRIAMISAHLQPSFTPQMEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLM 66

Query: 67  KINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126
           K+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPR
Sbjct: 67  KMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPR 126

Query: 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
           KPGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTV IAAEVFKK GTYDPK
Sbjct: 127 KPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186

Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID 246
           +LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP+EI+
Sbjct: 187 KLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIE 246

Query: 247 YLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTE 306
           YLT+RIQNGGTEVVEAK GAGSATLSMAYAAAKFADACLRGLRGDA VIEC++VAS VTE
Sbjct: 247 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTE 306

Query: 307 LPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
           L FFA+KVRLGR G EE++ LGPLNEYER GLEKAK+ELAGSIQKGV F+RK
Sbjct: 307 LAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2

 Score =  573 bits (1477), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 291/352 (82%), Positives = 319/352 (90%), Gaps = 1/352 (0%)

Query: 8   ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLM 66
           A +RIA I+AHL P  T Q+E ++S +G   CRAKGG+PGFKVA+LGAAGGIGQ L++LM
Sbjct: 7   AYKRIAMISAHLQPSFTPQMEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQSLSLLM 66

Query: 67  KINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126
           K+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPR
Sbjct: 67  KMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPR 126

Query: 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
           KPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTV IAAEVFKK GTYDPK
Sbjct: 127 KPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186

Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID 246
           +LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP+EI+
Sbjct: 187 KLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIE 246

Query: 247 YLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTE 306
           YLT+RIQNGGTEVVEAK GAGSATLSMAYAAAKFADACLRGLRGDA VIEC++VAS VTE
Sbjct: 247 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTE 306

Query: 307 LPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
           L FFA+KVRLGR G EE++ LGPLNEYER GLEKAK+ELAGSIQKGV F+RK
Sbjct: 307 LAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/319 (66%), Positives = 247/319 (77%)

Query: 40  AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV 99
           + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V
Sbjct: 23  SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEV 82

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
            G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC  IAK CP A++
Sbjct: 83  VGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALI 142

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV 219
           N+ISNPVNSTVPIAAE+FKK G YD K+L GVT LDVVRA TF A    +   EV+VPV+
Sbjct: 143 NMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVI 202

Query: 220 GGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 279
           GGHAGVTILPL SQ  P  +L+   +  LT R Q+GGTEVVEAK G GSATLSMAYA A 
Sbjct: 203 GGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAL 262

Query: 280 FADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 339
           FADACL+GL G   VIEC+YV ST+TELPFFASKVRLG+ G+EE+  LGPL+++E+ GLE
Sbjct: 263 FADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLE 322

Query: 340 KAKKELAGSIQKGVSFVRK 358
             K EL  SI+KGV F  +
Sbjct: 323 ALKPELKSSIEKGVKFANQ 341

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/311 (67%), Positives = 248/311 (79%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
           P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G
Sbjct: 33  PERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVG 92

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           ++QL  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK+LC  IAK CP A++N+ISN
Sbjct: 93  EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISN 152

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVNSTVPIAAEVFKK GTYD K+L GVT LDVVRA TF A    +   EV+VPV+GGHAG
Sbjct: 153 PVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAG 212

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
           +TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAK G GSATLSMAYA A FADAC
Sbjct: 213 ITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADAC 272

Query: 285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
           L+GL G   V+EC++V STVTELPFFASKV+LG+ G+E +  LGPL+++E+ GLEK K E
Sbjct: 273 LKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKEGLEKLKPE 332

Query: 345 LAGSIQKGVSF 355
           L  SI+KG+ F
Sbjct: 333 LKASIEKGIQF 343

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
359496625	356	PREDICTED: malate dehydrogenase, glyoxys	0.991	0.997	0.896	0.0
60593475	362	Chain A, Mature And Translocatable Forms	0.988	0.977	0.881	1e-180
126894	356	RecName: Full=Malate dehydrogenase, glyo	0.988	0.994	0.881	1e-180
359475502	356	PREDICTED: malate dehydrogenase, glyoxys	0.991	0.997	0.870	1e-179
449451347	356	PREDICTED: malate dehydrogenase, glyoxys	0.988	0.994	0.873	1e-178
1170897	356	RecName: Full=Malate dehydrogenase, glyo	0.988	0.994	0.873	1e-178
224097202	354	predicted protein [Populus trichocarpa]	0.988	1.0	0.857	1e-178
255562058	356	malate dehydrogenase, putative [Ricinus	0.986	0.991	0.858	1e-177
118489009	354	unknown [Populus trichocarpa x Populus d	0.983	0.994	0.858	1e-174
224103817	354	predicted protein [Populus trichocarpa]	0.983	0.994	0.855	1e-174

>gi|359496625|ref|XP_002263670.2| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|297739396|emb|CBI29427.3| unnamed protein product [Vitis vinifera]

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/356 (89%), Positives = 331/356 (92%), Gaps = 1/356 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
            PTS ANQRIARI+AHL P   Q+ GESSGL R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   HPTSDANQRIARISAHLQPSNFQM-GESSGLSRENCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDALTGMD+VIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALTGMDLVIIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           +DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP CS TP
Sbjct: 181 FDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTP 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EIDYLT RIQNGGTEVVEAK GAGSATLSMAYAA KFAD CLRGLRGDAGVI+CAYV S
Sbjct: 241 EEIDYLTARIQNGGTEVVEAKAGAGSATLSMAYAAVKFADTCLRGLRGDAGVIQCAYVFS 300

Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
            VTELPFFASKVRLGR G EEIY LGPLNEYERAGLEKAKKELA SIQKG+SF+RK
Sbjct: 301 QVTELPFFASKVRLGRTGAEEIYPLGPLNEYERAGLEKAKKELASSIQKGISFIRK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/355 (88%), Positives = 329/355 (92%), Gaps = 1/355 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
            VTELPFFASKVRLGR GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/355 (88%), Positives = 329/355 (92%), Gaps = 1/355 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
            VTELPFFASKVRLGR GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 310/356 (87%), Positives = 329/356 (92%), Gaps = 1/356 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QPT+ ANQRIAR++AHL+P   Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPTAEANQRIARLSAHLYPSVRQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE ALTGMD+VIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIV+TLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGH+GVTILPLLSQVKP CS TP
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTP 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            E  YLT+RIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV+EC +VAS
Sbjct: 241 EETQYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECTFVAS 300

Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
            VTELPFFA+KVRLGR+G EEIY LGPLNEYER GLEKAKKELAGSI KG+SF+RK
Sbjct: 301 QVTELPFFATKVRLGRSGAEEIYQLGPLNEYERVGLEKAKKELAGSIAKGISFIRK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451347|ref|XP_004143423.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus] gi|449499834|ref|XP_004160930.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 310/355 (87%), Positives = 329/355 (92%), Gaps = 1/355 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI+YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA+V+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
            VTELPFFA+KVRLGR GI+E+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct: 301 QVTELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170897|sp|P46488.1|MDHG_CUCSA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|695311|gb|AAC41647.1| glyoxysomal malate dehydrogenase [Cucumis sativus]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 310/355 (87%), Positives = 329/355 (92%), Gaps = 1/355 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI+YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA+V+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
            VTELPFFA+KVRLGR GI+E+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct: 301 QVTELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097202|ref|XP_002310874.1| predicted protein [Populus trichocarpa] gi|222853777|gb|EEE91324.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/358 (85%), Positives = 328/358 (91%), Gaps = 4/358 (1%)

Query: 1   MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQ 60
           MQQ    +N R+ARIAAH++PP LQ+  E  GL R++CRAKG S GFKVA+LGAAGGIGQ
Sbjct: 1   MQQ----SNLRVARIAAHINPPNLQMVEEDLGLERVNCRAKGASSGFKVAILGAAGGIGQ 56

Query: 61  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120
           PLAMLMK+NPLVS+LHLYDVVN PGVTADISHMDT+AVVRGFLGQQQLEDAL GMD+VII
Sbjct: 57  PLAMLMKMNPLVSLLHLYDVVNAPGVTADISHMDTSAVVRGFLGQQQLEDALIGMDLVII 116

Query: 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV 180
           PAGVPRKPGMTRDDLFNINAGIVKTLCE IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK 
Sbjct: 117 PAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKA 176

Query: 181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL 240
           G +DPKR+LGVTMLDVVRANTFVAE++GLDPREVDVPVVGGHAGVTILPLLSQVKP CS 
Sbjct: 177 GVFDPKRVLGVTMLDVVRANTFVAEIMGLDPREVDVPVVGGHAGVTILPLLSQVKPLCSF 236

Query: 241 TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300
           T  EIDYLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLR LRGDA V+ CAYV
Sbjct: 237 TQKEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRALRGDAAVVHCAYV 296

Query: 301 ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
           AS VTELPFFASKVRLGR G+EEIY LGPLN+YERAGLEKAKKELAGSIQKGVSFV+K
Sbjct: 297 ASEVTELPFFASKVRLGRNGVEEIYPLGPLNDYERAGLEKAKKELAGSIQKGVSFVKK 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562058|ref|XP_002522037.1| malate dehydrogenase, putative [Ricinus communis] gi|223538636|gb|EEF40237.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 304/354 (85%), Positives = 327/354 (92%), Gaps = 1/354 (0%)

Query: 5   TSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAM 64
           ++ A QRIARI+AHLHPP  Q+EG SS L R DCRAKGGSPGFKVA+LGAAGGIGQPLAM
Sbjct: 4   SAEAAQRIARISAHLHPPNFQMEG-SSALKRADCRAKGGSPGFKVAILGAAGGIGQPLAM 62

Query: 65  LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124
           LMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE+ALTGMD+V+IPAGV
Sbjct: 63  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGV 122

Query: 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD 184
           PRKPGMTRDDLFNINAGIV+TLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GTYD
Sbjct: 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYD 182

Query: 185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTE 244
           PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP CS T  E
Sbjct: 183 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTSEE 242

Query: 245 IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV 304
            +YLT RIQ+GGTEVV+AK GAGSATLSMAYAA KFADACLRGLRGDAG++EC++VAS V
Sbjct: 243 TEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGIVECSFVASQV 302

Query: 305 TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
           TELPFFA+KVRLGR G EE+Y LGPLNEYER GLEKAKKEL  SIQKG+SF++K
Sbjct: 303 TELPFFATKVRLGRNGAEEVYQLGPLNEYERIGLEKAKKELEASIQKGISFIKK 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489009|gb|ABK96312.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 303/353 (85%), Positives = 322/353 (91%), Gaps = 1/353 (0%)

Query: 6   SGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAML 65
           S ANQRIAR++AHL PP  Q+E ES  L R DCRAKGG+PGFKVA+LGAAGGIGQPLAML
Sbjct: 3   SVANQRIARVSAHLQPPNSQME-ESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAML 61

Query: 66  MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125
           MK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE+ALTGMD+VIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 121

Query: 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185
           RKPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDP
Sbjct: 122 RKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDP 181

Query: 186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 245
           KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ KP  S TP E 
Sbjct: 182 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEET 241

Query: 246 DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVT 305
           +YLT RIQ+GGTEVV+AK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA+VAS VT
Sbjct: 242 EYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASEVT 301

Query: 306 ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
           ELPFFA+KVRLGR G EE+Y LGPLNEYER GL+KAKKELA SIQKG SF+RK
Sbjct: 302 ELPFFATKVRLGRRGAEEVYQLGPLNEYERVGLQKAKKELAESIQKGTSFIRK 354

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103817|ref|XP_002313205.1| predicted protein [Populus trichocarpa] gi|118487242|gb|ABK95449.1| unknown [Populus trichocarpa] gi|222849613|gb|EEE87160.1| predicted protein [Populus trichocarpa]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 302/353 (85%), Positives = 322/353 (91%), Gaps = 1/353 (0%)

Query: 6   SGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAML 65
           S ANQRIAR++AHL PP  Q+E ES  L R DCRAKGG+PGFKVA+LGAAGGIGQPLAML
Sbjct: 3   SVANQRIARVSAHLQPPNSQME-ESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAML 61

Query: 66  MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125
           MK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE ALTGMD+VIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVP 121

Query: 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185
           RKPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDP
Sbjct: 122 RKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDP 181

Query: 186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 245
           KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ KP  S TP E 
Sbjct: 182 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEET 241

Query: 246 DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVT 305
           +YLT RIQ+GGTEVV+AK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA++AS VT
Sbjct: 242 EYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFIASEVT 301

Query: 306 ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
           ELPFFA+KVRLGR G EE+Y LGPLNEYER GL+KAKKELA SIQKG+SF+RK
Sbjct: 302 ELPFFATKVRLGRRGAEEVYQLGPLNEYERVGLQKAKKELAESIQKGISFIRK 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.977	0.988	0.843	5.5e-157
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.821	0.809	0.845	5.6e-132
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.891	0.935	0.661	1.6e-109
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.877	0.920	0.659	8.1e-108
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.871	0.774	0.636	2e-102
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.877	0.934	0.601	3.5e-98
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.893	0.949	0.568	1e-93
ZFIN|ZDB-GENE-040426-2143	337	mdh2 "malate dehydrogenase 2,	0.863	0.916	0.582	2.1e-93
WB|WBGene00003162	341	mdh-2 [Caenorhabditis elegans	0.927	0.973	0.568	5.5e-93
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.865	0.917	0.570	7e-93

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1530 (543.6 bits), Expect = 5.5e-157, P = 5.5e-157
 Identities = 296/351 (84%), Positives = 322/351 (91%)

Query:     9 NQRIARIAAHLHPPTLQIE-GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
             NQRIARI+AHL+PP L  +  + SGL R+ CRAKGGSPGFKVA+LGAAGGIGQPLAMLMK
Sbjct:     4 NQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMK 63

Query:    68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
             +NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRK
Sbjct:    64 MNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRK 123

Query:   128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
             PGMTRDDLFNINAGIV+TL E IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK GT+DPK+
Sbjct:   124 PGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKK 183

Query:   188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
             L+GVTMLDVVRANTFVAEV+ LDPREV+VPVVGGHAGVTILPLLSQVKP CS T  EI+Y
Sbjct:   184 LMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEY 243

Query:   248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTEL 307
             LTDRIQNGGTEVVEAK GAGSATLSMAYAA +FADACLRGLRGDA ++ECAYVAS VTEL
Sbjct:   244 LTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVTEL 303

Query:   308 PFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
             PFFASKVRLGR GI+E+Y LGPLNEYER GLEKAKKEL+ SI KGV+F +K
Sbjct:   304 PFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
 Identities = 251/297 (84%), Positives = 274/297 (92%)

Query:     8 ANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
             ANQRIARI+AHL P   Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK
Sbjct:     7 ANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMK 63

Query:    68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
             +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRK
Sbjct:    64 MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query:   128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
             PGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDPK+
Sbjct:   124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query:   188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
             LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP EI+Y
Sbjct:   184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

Query:   248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV 304
             LT+RIQNGGTEVVEAK GAGSATLSMAYAAAKFADACLRGLRGDA V+EC++VAS V
Sbjct:   244 LTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQV 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
 Identities = 211/319 (66%), Positives = 247/319 (77%)

Query:    40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV 99
             + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V
Sbjct:    23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEV 82

Query:   100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
              G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC  IAK CP A++
Sbjct:    83 VGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALI 142

Query:   160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV 219
             N+ISNPVNSTVPIAAE+FKK G YD K+L GVT LDVVRA TF A    +   EV+VPV+
Sbjct:   143 NMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVI 202

Query:   220 GGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 279
             GGHAGVTILPL SQ  P  +L+   +  LT R Q+GGTEVVEAK G GSATLSMAYA A 
Sbjct:   203 GGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAL 262

Query:   280 FADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 339
             FADACL+GL G   VIEC+YV ST+TELPFFASKVRLG+ G+EE+  LGPL+++E+ GLE
Sbjct:   263 FADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLE 322

Query:   340 KAKKELAGSIQKGVSFVRK 358
               K EL  SI+KGV F  +
Sbjct:   323 ALKPELKSSIEKGVKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
 Identities = 207/314 (65%), Positives = 246/314 (78%)

Query:    45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
             P  KV +LGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G
Sbjct:    28 PDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMG 87

Query:   105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK L   IAK CP+A+VN+ISN
Sbjct:    88 DDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISN 147

Query:   165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
             PVNSTVPIAAE+FKK GTYD K+L GVT LDVVRA TF A    ++  EV+VPVVGGHAG
Sbjct:   148 PVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAG 207

Query:   225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
             +TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAK G GSATLSMAYA A FADAC
Sbjct:   208 ITILPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADAC 267

Query:   285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
             L+GL G   V+EC++V ST+TELPFFASKVRLG+ G+EE+  LGPL+++E+ GLE  K E
Sbjct:   268 LKGLNGVPNVVECSFVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKAE 327

Query:   345 LAGSIQKGVSFVRK 358
             L  SI+KG+ F  +
Sbjct:   328 LKSSIEKGIKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 200/314 (63%), Positives = 244/314 (77%)

Query:    47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
             +KVAVLGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G  
Sbjct:    83 YKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPS 142

Query:   107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             +L D L  +++V+IPAGVPRKPGMTRDDLFNINA IVKTL E +A+ CP A +++ISNPV
Sbjct:   143 ELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPV 202

Query:   167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
             NSTVPIAAEV KK G YDPK+L GVT LDVVRANTFV++   L   +VDVPV+GGHAG+T
Sbjct:   203 NSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGIT 262

Query:   227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
             ILPLLS+ KPS + T  EI  LT RIQN GTEVV+AK GAGSATLSMAYAAA+F ++ LR
Sbjct:   263 ILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSMAYAAARFVESSLR 322

Query:   287 GLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYS--LGPLNEYERAGLEKAKKE 344
              L GD  V EC++V ST+T+LPFFAS+V++G+ G+E +    L  L EYE+  LE  K E
Sbjct:   323 ALDGDGDVYECSFVESTLTDLPFFASRVKIGKNGLEAVIESDLQGLTEYEQKALEALKVE 382

Query:   345 LAGSIQKGVSFVRK 358
             L  SI KGV+F  K
Sbjct:   383 LKASIDKGVAFANK 396

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 189/314 (60%), Positives = 237/314 (75%)

Query:    42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG 101
             G    +KV V GAAGGIGQPL++L+K NPLV+ L LYD+V+TPGV AD+SH+DT +   G
Sbjct:    20 GQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPGVAADLSHIDTKSKTAG 79

Query:   102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             F+G  QL D+L G D+V+IPAGVPRKPGMTRDDLFN+NAGI+K +   IAK CPKA+V +
Sbjct:    80 FIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAI 139

Query:   162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
             I+NPVN+ VPIAAE+ KK G YDPKRL GV+ LDVVRA  F+   LG+DP+ V +PV+GG
Sbjct:   140 ITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGG 199

Query:   222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFA 281
             H+GVTILP+LSQ +P        I+ LT RIQ  GTEVV+AK GAGSATLSMAYA A+FA
Sbjct:   200 HSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFA 259

Query:   282 DACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA 341
              + L+GL G+  VIEC+YV STVTE  FF++ + LG+ G++E   L  LN+YE+  LE A
Sbjct:   260 GSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQENLGLPKLNDYEKKLLEAA 319

Query:   342 KKELAGSIQKGVSF 355
               EL  +IQKG+ F
Sbjct:   320 IPELKKNIQKGIDF 333

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 183/322 (56%), Positives = 234/322 (72%)

Query:    38 CR--AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT 95
             CR  A       KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T
Sbjct:    13 CRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 72

Query:    96 NAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              A V+GFLG +QL + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    AK CP
Sbjct:    73 RANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCP 132

Query:   156 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
             +A++ +ISNPVNST+PI +EVFKK G Y+P R+ GVT LD+VRANTFVAE+ GLDP  V 
Sbjct:   133 EAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVS 192

Query:   216 VPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
             VPV+GGHAG TI+PL+SQ  P       +++ LT RIQ  GTEVV+AK GAGSATLSMAY
Sbjct:   193 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAGSATLSMAY 252

Query:   276 AAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYER 335
             A A+F  + +  + G  GVIEC++V S  TE P+F++ + LG+ GIE+   +G +  +E 
Sbjct:   253 AGARFVFSLVDAMNGKEGVIECSFVRSEETESPYFSTPLLLGKNGIEKNLGIGKITPFEE 312

Query:   336 AGLEKAKKELAGSIQKGVSFVR 357
               + +A  EL  SI+KG  F +
Sbjct:   313 KMVAEAMAELKASIKKGEDFAK 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2143 mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Danio rerio (taxid:7955)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 180/309 (58%), Positives = 233/309 (75%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPL++L+K +PLVS L L+D+ +TPGV AD+SH++T A V+G++G  Q
Sbjct:    25 KVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQ 84

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L DAL G ++V+IPAGVPRKPGMTRDDLFN NA IV TL +G A+ CP+A++ +ISNPVN
Sbjct:    85 LGDALKGCEVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVN 144

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PI +EV KK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPVVGGHAG+TI
Sbjct:   145 STIPITSEVMKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVVGGHAGITI 204

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
             +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + L  
Sbjct:   205 IPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFTFSLLDA 264

Query:   288 LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG 347
             + G  GV+EC++V S  TE  +F++ + LG+ GIE+   LG L+ +E   +  A  EL G
Sbjct:   265 MNGKEGVVECSFVRSEETECKYFSTPLLLGKNGIEKNLGLGKLSAFEEKLVADAMTELKG 324

Query:   348 SIQKGVSFV 356
             SI+KG  FV
Sbjct:   325 SIKKGEDFV 333

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

WB|WBGene00003162 mdh-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 191/336 (56%), Positives = 246/336 (73%)

Query:    23 TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82
             TL     +SGL  +  R    +P  KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVN
Sbjct:     7 TLVQAAANSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVN 64

Query:    83 TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI 142
             TPGV AD+SH+D+NA V    G ++L  A+   D+++IPAGVPRKPGMTRDDLFN NAGI
Sbjct:    65 TPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGI 124

Query:   143 VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTF 202
             V+ L   IAK  PKA++ +I+NPVNSTVPIA+EV KK G YDPKR+ GVT LDVVR+  F
Sbjct:   125 VRDLAAVIAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAF 184

Query:   203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEA 262
             V+E+ G D  +  VPVVGGHAG+TI+PLLSQVKPS   +  EI  LT RIQ+ GTEVV A
Sbjct:   185 VSELKGHDASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNA 244

Query:   263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS-TVTELPFFASKVRLGRAGI 321
             K GAGSATLSMA A A+FA+A +RG++G+  V +CAYVAS  V  + +F++ V LG  G+
Sbjct:   245 KAGAGSATLSMALAGARFANALVRGIKGEKNV-QCAYVASDAVKGVEYFSTPVELGPNGV 303

Query:   322 EEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
             E+I  +G ++ YE+  ++ +  EL  +I KGV+FV+
Sbjct:   304 EKILGVGKVSAYEQKLIDASVPELNKNIAKGVAFVK 339

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;ISS

GO:0006108 "malate metabolic process" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005739 "mitochondrion" evidence=ISS;IDA

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 177/310 (57%), Positives = 232/310 (74%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPLA+L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct:    26 KVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTAACAQHCPEAMICVISNPVN 145

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PIA EVFKK G YDP ++ GVT LD+VRANTF+AE+ GLDP  V+VPV+GGHAG TI
Sbjct:   146 STIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTI 205

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
             +PL+SQ  P   L   ++  +T RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  
Sbjct:   206 IPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 265

Query:   288 LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG 347
             + G  GV+EC++V S   +  +F++ + LG+ GIE+   +G ++ +E   + +A  EL  
Sbjct:   266 MNGKEGVVECSFVKSQEADCAYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 325

Query:   348 SIQKGVSFVR 357
             SI+KG  FV+
Sbjct:   326 SIKKGEEFVK 335

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43744	MDHM_BRANA	1, ., 1, ., 1, ., 3, 7	0.6269	0.8910	0.9354	N/A	no
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.8267	0.9804	0.9804	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.5709	0.8659	0.9171	yes	no
B1LGK2	MDH_ECOSM	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
C4ZSX4	MDH_ECOBW	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
Q42972	MDHG_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.8414	0.9664	0.9719	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.5709	0.8659	0.9171	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.6603	0.8770	0.9048	N/A	no
B7LRL0	MDH_ESCF3	1, ., 1, ., 1, ., 3, 7	0.5573	0.8659	0.9935	yes	no
P83373	MDHM_FRAAN	1, ., 1, ., 1, ., 3, 7	0.6624	0.8770	0.9262	N/A	no
P17783	MDHM_CITLA	1, ., 1, ., 1, ., 3, 7	0.6752	0.8687	0.8962	N/A	no
Q9ZP05	MDHG1_ARATH	1, ., 1, ., 1, ., 3, 7	0.8404	0.9720	0.9830	no	no
Q0TCN0	MDH_ECOL5	1, ., 1, ., 1, ., 3, 7	0.5636	0.8659	0.9935	yes	no
A8A545	MDH_ECOHS	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
B7UJW8	MDH_ECO27	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
Q1R6A3	MDH_ECOUT	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.8732	0.9888	0.9943	N/A	no
A7MWD3	MDH_VIBHB	1, ., 1, ., 1, ., 3, 7	0.5591	0.8631	0.9935	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.5677	0.8659	0.9171	yes	no
A1AGC9	MDH_ECOK1	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.8352	0.9804	0.9804	N/A	no
P61889	MDH_ECOLI	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	N/A	no
B7N0M1	MDH_ECO81	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
Q31WA4	MDH_SHIBS	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
P37228	MDHG_SOYBN	1, ., 1, ., 1, ., 3, 7	0.8342	0.9832	0.9971	yes	no
B7MBZ7	MDH_ECO45	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5684	0.9273	0.9736	yes	no
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.5709	0.8659	0.9171	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
A7ZSD0	MDH_ECO24	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.5741	0.8659	0.9171	yes	no
B1XHK9	MDH_ECODH	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.8816	0.9888	0.9943	N/A	no
Q42686	MDHM_CHLRE	1, ., 1, ., 1, ., 3, 7	0.6474	0.8659	0.8310	N/A	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.5709	0.8659	0.9171	yes	no
B7NKU9	MDH_ECO7I	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
O82399	MDHG2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8433	0.9776	0.9887	yes	no
P61890	MDH_ECOL6	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5544	0.8603	0.9871	yes	no
B2U1U9	MDH_SHIB3	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
P61891	MDH_ECO57	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	N/A	no
Q87SU7	MDH_VIBPA	1, ., 1, ., 1, ., 3, 7	0.5654	0.8631	0.9935	yes	no
B5YSW2	MDH_ECO5E	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no
Q4R568	MDHM_MACFA	1, ., 1, ., 1, ., 3, 7	0.5709	0.8659	0.9171	N/A	no
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.5605	0.8659	0.9935	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
3rd Layer	1.1.1.37	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	0.0
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-152
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-145
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-142
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	2e-81
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	2e-58
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	1e-55
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	2e-48
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	7e-47
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	3e-40
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	5e-34
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	3e-33
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	4e-31
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	1e-30
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	6e-26
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	9e-24
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	1e-23
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	3e-18
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	4e-16
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	1e-15
cd00704	323	cd00704, MDH, Malate dehydrogenase	2e-15
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	2e-15
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	1e-14
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	2e-13
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	2e-11
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	4e-11
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	6e-11
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	4e-08
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	3e-07
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	7e-07

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  644 bits (1663), Expect = 0.0
 Identities = 245/323 (75%), Positives = 270/323 (83%)

Query: 29  ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 88
                    CRAKGG+PGFKVAVLGAAGGIGQPL++LMK+NPLVS LHLYD+ NTPGV A
Sbjct: 1   SMEASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAA 60

Query: 89  DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE 148
           D+SH++T A VRGFLG  QL DAL G D+VIIPAGVPRKPGMTRDDLFNINAGIVKTLCE
Sbjct: 61  DVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE 120

Query: 149 GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG 208
            +AK CP A+VN+ISNPVNSTVPIAAEV KK G YDPK+L GVT LDVVRANTFVAE  G
Sbjct: 121 AVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKG 180

Query: 209 LDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
           LDP +VDVPVVGGHAG+TILPLLSQ  P  S T  EI+ LT RIQNGGTEVVEAK GAGS
Sbjct: 181 LDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGS 240

Query: 269 ATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLG 328
           ATLSMAYAAA+FADACLRGL G+A V+EC+YV S VTELPFFASKVRLGR G+EE+  LG
Sbjct: 241 ATLSMAYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLG 300

Query: 329 PLNEYERAGLEKAKKELAGSIQK 351
           PL+EYE+ GLE  K EL  SI+K
Sbjct: 301 PLSEYEQKGLEALKPELKASIEK 323

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  570 bits (1472), Expect = 0.0
 Identities = 213/310 (68%), Positives = 254/310 (81%)

Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
            KVAVLGAAGGIGQPL++L+K+NPLVS L LYD+VNTPGV AD+SH++T A V G+LG +
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
           +L+ AL G D+V+IPAGVPRKPGMTRDDLFNINAGIV+ L   +AK CPKA++ +ISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
           NSTVPIAAEV KK G YDPKRL GVT LDVVRANTFVAE+LGLDP +V+VPV+GGH+GVT
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
           ILPLLSQ +P  +    EI+ LT RIQ GG EVV+AK GAGSATLSMAYA A+FA++ LR
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR 240

Query: 287 GLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
           GL+G+ GVIECAYV S VTE PFFA+ V LG+ G+E+   LG LN+YE+  LE A  EL 
Sbjct: 241 GLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELK 300

Query: 347 GSIQKGVSFV 356
            +I+KGV FV
Sbjct: 301 KNIEKGVDFV 310

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  431 bits (1110), Expect = e-152
 Identities = 186/312 (59%), Positives = 235/312 (75%), Gaps = 1/312 (0%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGAAGGIGQPL++L+K+ P VS L LYD+    GV AD+SH+ T A V+GF G++ 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           LE+AL G D+V+IPAGVPRKPGMTRDDLFN+NAGIVK L   +A+ CPKA++ +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           STVPIAAEV KK G YDP +L GVT LD+VRANTFVAE+ G DP EV+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
           +PL+SQ       T  +++ L  RIQN GTEVV+AK GAGSATLSMA+A A+F  + +RG
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240

Query: 288 LRGDAGVIECAYVAS-TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
           L+G+ GV+ECAYV S  VTE  FFA+ + LG+ G+E+   +G L+ +E   L  A  EL 
Sbjct: 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELK 300

Query: 347 GSIQKGVSFVRK 358
            +I+KG  FV  
Sbjct: 301 KNIKKGEEFVAS 312

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  412 bits (1061), Expect = e-145
 Identities = 178/313 (56%), Positives = 214/313 (68%), Gaps = 4/313 (1%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L E +AK CPKA + +I+NP
Sbjct: 62  D-PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LDV+R+ TFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 285
           TILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 286 RGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL 345
           R L+G+ GV+ECAYV        FFA  V LG+ G+EE   +G L+ +E+  LE     L
Sbjct: 240 RALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTL 299

Query: 346 AGSIQKGVSFVRK 358
              I  G  FV K
Sbjct: 300 KKDIALGEEFVNK 312

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  405 bits (1044), Expect = e-142
 Identities = 189/313 (60%), Positives = 235/313 (75%), Gaps = 3/313 (0%)

Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
           FKVAVLGAAGGIGQPL++L+K NP VS L LYD+V  PGV AD+SH+DT A V G+   +
Sbjct: 9   FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGE 68

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             E AL G D+V+I AGVPRKPGMTRDDLFN NA IV+ L   +A   PKAIV ++SNPV
Sbjct: 69  LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
           NSTVPIAAE  KK G YDP++L GVT LDVVRA  FVAE LG++P +V+VPVVGGH+GVT
Sbjct: 129 NSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVT 188

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
           I+PLLSQ     SL   +++ +T R+Q GG EVV+AK GAGSATLSMAYAAA+++ + L+
Sbjct: 189 IVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLK 246

Query: 287 GLRGDAGVIECAYVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL 345
            LRGD G++ECA+V S +  E PFF+S V LG+ G+E +  +GPLN YE   LE A  +L
Sbjct: 247 ALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDL 306

Query: 346 AGSIQKGVSFVRK 358
             +I+KG+ F RK
Sbjct: 307 KKNIEKGLEFARK 319

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  250 bits (641), Expect = 2e-81
 Identities = 116/321 (36%), Positives = 166/321 (51%), Gaps = 23/321 (7%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KVAV+GA G +G  LA L+ +  L S L L D+      GV  D+SH          +  
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
               + L G DIV+I AGVPRKPGMTR DL   NA IVK + + IAK  P AIV +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    IA +           R++G  T+LD  R  TF+AE LG+ P++V   V+G H G
Sbjct: 121 VDILTYIAMKFSGF----PKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-G 175

Query: 225 VTILPLLSQV----KPSCSL----TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
            T++PL SQ     KP   L    T  +++ L +R++N G E++EAK          A A
Sbjct: 176 DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKG--AGTYYGPAAA 233

Query: 277 AAKFADACLRGLRGDAGVIECAYV-ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYER 335
            A+  +A LR  +    +    Y+      E  +F     LG+ G+EEI  L  L++ E+
Sbjct: 234 LARMVEAILRDEK--RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQ 290

Query: 336 AGLEKAKKELAGSIQKGVSFV 356
             L+K+ +EL  +I+     V
Sbjct: 291 EKLDKSAEELKKNIELVKELV 311

Length = 313

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  186 bits (474), Expect = 2e-58
 Identities = 81/177 (45%), Positives = 108/177 (61%), Gaps = 16/177 (9%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG----------VTILPLLSQVKPSCSLT 241
           T LD  RA TF+AE  G+DPR V+V V+G H+G          VTI+PL+SQVK +   T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 242 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGD--AGVIECAY 299
             E++ L +R+QN G EV+EAK  AGS T SMAYAAA+ A A LRG  G    GV    Y
Sbjct: 61  DWELEELIERVQNAGYEVIEAK--AGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGY 118

Query: 300 VASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 356
                 +  +F+  V LG+ G+E++  + PLN++ER  LEK+  EL   I+KG +FV
Sbjct: 119 YG--SPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEIEKGFAFV 173

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  178 bits (453), Expect = 1e-55
 Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTNAVVRGFLGQ 105
           KVAV+GA GG+G  LA  + +  L   L L D+      GV  D+SH  T   V G +G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
               +AL   D+V+I AGVPRKPGMTR DL N NAGI K +   IAK  P AIV ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    IA +V    G    + +  
Sbjct: 121 VDILTYIAWKVS---GLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  164 bits (419), Expect = 2e-48
 Identities = 102/319 (31%), Positives = 162/319 (50%), Gaps = 38/319 (11%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHM----DTNAVVRGF 102
           ++++GA G +G  LA L+ +  L  V+ L D+V   P G   DIS       ++  V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGT 58

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              + +  +    D+V+I AG+PRKPGM+RDDL   NA IVK + E I K  P AIV ++
Sbjct: 59  NDYEDIAGS----DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NP++        V  K   +   R++G+  +LD  R   F+AE LG+  ++V   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 222 HAGVTILPLLSQ-----VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
           H G T++PL        +  +  +T  EID + +R +NGG E+V      GSA  + A A
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228

Query: 277 AAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPL 330
            A+  +A L+  +    V+ C+      Y    +    F    V LG+ G+E+I  L  L
Sbjct: 229 IAEMVEAILKDKK---RVLPCSAYLEGEYGIKDI----FVGVPVVLGKNGVEKIIEL-DL 280

Query: 331 NEYERAGLEKAKKELAGSI 349
            + E+   +K+ + +   I
Sbjct: 281 TDEEKEAFDKSVESVKELI 299

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  161 bits (409), Expect = 7e-47
 Identities = 112/324 (34%), Positives = 173/324 (53%), Gaps = 42/324 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGF--- 102
           K++++GA G +G  LA L+ +  L  V+ L+D+V   P G   DI+     A V GF   
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G    ED + G D+V+I AGVPRKPGM+RDDL  INA I+K + EGI K  P AIV +
Sbjct: 59  ITGTNDYED-IAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV++   +A     K   +   R++G+  +LD  R  TF+AE L +  ++V   V+G
Sbjct: 118 VTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLG 173

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G +++PL+        P   L   E +D + +R + GG E+V      GSA  + A 
Sbjct: 174 GH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231

Query: 276 AAAKFADACLRGLRGDAG-VIEC-AY------VASTVTELPFFASKVRLGRAGIEEIYSL 327
           + A+  +A L+    D   V+ C AY      V      +P     V+LG+ G+E+I  L
Sbjct: 232 SIAEMVEAILK----DKKRVLPCSAYLEGEYGVKDVYVGVP-----VKLGKNGVEKIIEL 282

Query: 328 GPLNEYERAGLEKAKKELAGSIQK 351
             L++ E+A  +K+ + +   I+ 
Sbjct: 283 -ELDDEEKAAFDKSVEAVKKLIEA 305

Length = 307

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  142 bits (360), Expect = 3e-40
 Identities = 81/310 (26%), Positives = 124/310 (40%), Gaps = 65/310 (20%)

Query: 49  VAVLGAAGGIGQPLA--MLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG 104
           +AV+GA G +G  LA  +      L   L LYD+      GV  D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                +A    D+VII AGV RKPGM R DL   N  IVK + + I K  P A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PV+    I   +  +      ++++G+  LD +R    +AE LG+DP +V V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
            + +P  S V+                                     +A + A    + 
Sbjct: 177 -SQVPDWSTVR-------------------------------------IATSIADLIRSL 198

Query: 285 LRGLRGDAGVIECAYVAS---------TVTELPFFASKVRLGRAGIEEIYSLGPLNEYER 335
           L     D G I    V +          V  +P       +G+ G+EE   +  L ++E 
Sbjct: 199 LN----DEGEILPVGVRNNGQIGIPDDVVVSVP-----CIVGKNGVEEPIEV-GLTDFEL 248

Query: 336 AGLEKAKKEL 345
             L+K+   L
Sbjct: 249 EKLQKSADTL 258

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  127 bits (321), Expect = 5e-34
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 37/308 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISH-MDTNAVVRGFLG 104
           K++++GA G IG  +A+L+    L  V+ LYDV+   P G   D+ H           LG
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
               ED +   D+V+I AGV RK  MTR+DL  IN  I+K++ E + K CP A V  ++N
Sbjct: 65  TNNYED-IKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++       +VF++       ++ G+  +LD  R    +AE LG+ P +V   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 224 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           G  ++PL          LS      ++T  EI+ +  + +N G E+V+     GSA  + 
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAP 237

Query: 274 AYAAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSL 327
           A A     +A L+  +    V+ C+      Y    +    F    V +G  GIE++  L
Sbjct: 238 AAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNL----FVGVPVVIGGKGIEKVIEL 290

Query: 328 GPLNEYER 335
             LN  E+
Sbjct: 291 -ELNAEEK 297

Length = 319

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  124 bits (314), Expect = 3e-33
 Identities = 90/309 (29%), Positives = 142/309 (45%), Gaps = 26/309 (8%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQ 106
           + ++GA G +G  +A  +    L S L L DV      G   D+SH          +   
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGG 59

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
              DA    DIV+I AG PRKPG TR DL N NA I++++   + K  P AI+ ++SNPV
Sbjct: 60  DYADA-ADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV 118

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           +    I   V +K+      R++G  T+LD  R  + +AE L +DP+ V   V+G H G 
Sbjct: 119 D----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEH-GD 173

Query: 226 TILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 278
           + +   S       P   L P    +++ + + ++  G E++  K   G+    +A A A
Sbjct: 174 SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAIA 230

Query: 279 KFADACLRGLRGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSLGPLNEYERA 336
               + L   R    V+  + V      +     +    +GR G+  I  + PL E E A
Sbjct: 231 DIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEA 286

Query: 337 GLEKAKKEL 345
            L+K+ + L
Sbjct: 287 KLQKSAEAL 295

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  119 bits (300), Expect = 4e-31
 Identities = 101/322 (31%), Positives = 168/322 (52%), Gaps = 42/322 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVR-GFLG 104
           K++++G+ G IG  +A L+ +  L  V+ L+D+V N P G   DISH +  A      +G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIV 159
               ED + G D+VI+ AG+ ++PG +     RDDL  +NA I+  + EGI K CP A V
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPV 218
            +I+NP++  V    ++ ++       ++ G+  +LD  R  T++AE LG++PR+V   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 219 VGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
           +G H G  ++PL          LS+      +T  EID + +R +N G E+V+   G GS
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGS 238

Query: 269 ATLSMAYAAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIE 322
           A  + A AA + A+A L+  +    V+ C+      Y    +    +  +   +G  G+E
Sbjct: 239 AYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDI----YMGTPAVIGANGVE 291

Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
           +I  L  L   E+   +++ KE
Sbjct: 292 KIIEL-DLTPEEQKKFDESIKE 312

Length = 321

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  118 bits (296), Expect = 1e-30
 Identities = 95/310 (30%), Positives = 157/310 (50%), Gaps = 30/310 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF--- 102
           K++V+GA G +G   A  +    L  ++ L DVV     G   D   M   + V GF   
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALD---MYEASPVGGFDTK 57

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIV+I AG+PRKPGM+R+DL ++NAGIV+ +   I +  P  I+ +
Sbjct: 58  VTGTNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNP+++   +A +       +  +R++G   +LD  R  TF+A  LG+  ++V   V+G
Sbjct: 117 VSNPLDAMTYVAWQ----KSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLG 172

Query: 221 GHAGVTILPL-----LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G  ++PL     ++ +  +  ++   I  + +R + GG E+V      GSA  + A 
Sbjct: 173 GH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNL-LKQGSAYYAPAA 230

Query: 276 AAAKFADACLRGLRGDAGVIEC-AYVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEY 333
           +  +  +A L+  +    V+ C AY+      +  +    V LG+ G+E IY L  L++ 
Sbjct: 231 SVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQS 286

Query: 334 ERAGLEKAKK 343
           E A L K+ K
Sbjct: 287 ELALLNKSAK 296

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  105 bits (263), Expect = 6e-26
 Identities = 85/335 (25%), Positives = 144/335 (42%), Gaps = 75/335 (22%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHL-----------------YDVVNTPGVTADI 90
           KV+++GA+G +G   A+L+    +V  ++L                 YD +   G+ A+I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 91  SHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI 150
                 + V              G DIVII AGVPRK GM+R DL   NA IVK   + I
Sbjct: 62  KISSDLSDV-------------AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 151 AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGL 209
           A+  P   + +++NPV+     A     K   +D  R+ G+ T LD +R    +A+   +
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKAL----KESGFDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 210 DPREVDVPVVGGHAGVTILPLLSQVK----PSCSLTPTE---IDYLTDRIQNGGTEVVEA 262
              EV   ++G H G +++PL+S       P       +   ++ + + ++N G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 263 KTGA----GSATLSMAYAAAK----------FADACLRGLRGDAGVIECAYVASTVTELP 308
           K G+     SA  ++    A           + +  + G+R       C  V        
Sbjct: 224 KGGSEYGPASAISNLVRTIANDERRILTVSTYLEGEIDGIRD-----VCIGVP------- 271

Query: 309 FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 343
                V+LG+ GIEEI  +  +++ ER    K+ +
Sbjct: 272 -----VKLGKNGIEEIVPI-EMDDDEREAFRKSAE 300

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 99.2 bits (248), Expect = 9e-24
 Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 26/248 (10%)

Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
               D+V+I AG P+KPG TR +L   N  I+K++   + K     I  + +NPV+    
Sbjct: 62  CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---- 117

Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-------- 222
           I   V  K+  +   R++G  T+LD  R    +AE LG+DP+ V   ++G H        
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVW 177

Query: 223 --AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF 280
             A +  +PLL  +K   + T  +++ +   +++   E++  K   G+    +  A A+ 
Sbjct: 178 SSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIGMAVARI 234

Query: 281 ADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 337
            +A L         +  ++  Y    V    +      LGR G+EEI  L PL++ E+  
Sbjct: 235 VEAILHDENRVLPVSAYLDGEYGIKDV----YIGVPAVLGRNGVEEIIEL-PLSDEEKEA 289

Query: 338 LEKAKKEL 345
            +K+ + L
Sbjct: 290 FQKSAETL 297

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 99.1 bits (248), Expect = 1e-23
 Identities = 91/331 (27%), Positives = 140/331 (42%), Gaps = 53/331 (16%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHM--DTNAVVRGF 102
           KV ++GA G +G   A  +    +   L L D+ N         D+        + V+  
Sbjct: 2   KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKIK 59

Query: 103 LGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
            G     +DA    DIV+I AG P+KPG TR DL   NA I+K++   I       I  +
Sbjct: 60  AGDYSDCKDA----DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLV 115

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            SNPV+    +   V +K+      R++G  T LD  R    +AE L +DPR V   V+G
Sbjct: 116 ASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLG 171

Query: 221 GH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267
            H              G  +L LL + K    L+  ++D + + ++  G E++  K   G
Sbjct: 172 EHGDSQFVAWSTVTVGGKPLLDLLKEGK----LSELDLDEIEEDVRKAGYEIINGK---G 224

Query: 268 SATLSMAYAAAKFADACLRGLRGDAGVI-------ECAYVASTVTELPFFASKVRLGRAG 320
           +    +A A A+   A L     D   I       +  Y    V    +      +GR G
Sbjct: 225 ATYYGIATALARIVKAILN----DENAILPVSAYLDGEYGEKDV----YIGVPAIIGRNG 276

Query: 321 IEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
           +EE+  L  L E E+   EK+   +  +I+K
Sbjct: 277 VEEVIEL-DLTEEEQEKFEKSADIIKENIKK 306

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 83.7 bits (208), Expect = 3e-18
 Identities = 89/330 (26%), Positives = 143/330 (43%), Gaps = 52/330 (15%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISH-MDTNAVVRGFL 103
           KVA++GA G +G   A  + +  L S + L D+ N         D++H       VR + 
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDI-NKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 104 GQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           G     + A    D+V+I AG  +KPG TR DL   N  I K +   I K  P AI+ ++
Sbjct: 60  GDYADCKGA----DVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    +   V  K+    P R++G  T+LD  R    + E LG+DPR V   ++G 
Sbjct: 116 TNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171

Query: 222 H-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
           H              GV +                  + + + ++N   E++E K   G+
Sbjct: 172 HGDSEVAVWSSANIGGVPLDEFCKLCGRPF--DEEVREEIFEEVRNAAYEIIERK---GA 226

Query: 269 ATLSMAYAAAKFADACLRGLRGD-------AGVIECAYVASTVT-ELPFFASKVRLGRAG 320
              ++  A A+  +A LR    D       + +++  Y    V   LP     V  GR+G
Sbjct: 227 TYYAIGLALARIVEAILR----DENSVLTVSSLLDGQYGIKDVALSLP---CIV--GRSG 277

Query: 321 IEEIYSLGPLNEYERAGLEKAKKELAGSIQ 350
           +E +    PL+E E   L  + + L  +I+
Sbjct: 278 VERVLPP-PLSEEEEEALRASAEVLKEAIE 306

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 33/253 (13%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        +  K  P+V  LHL D+        GV  ++   D  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMEL--EDCA 60

Query: 97  -AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
             ++ G +     E+A   +D  ++    PRKPGM R DL + N  I K   + + K   
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K + V ++ NP N+   IA++    +    PK    +T LD  RA   +A   G+   +V
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDI---PPKNFSAMTRLDHNRAKYQLAAKAGVPVSDV 177

Query: 215 -DVPVVGGHAGVTILPLLSQ----VKPSCSLTPTEIDYL----TDRIQNGGTEVVEAKTG 265
            +V + G H+  T +P  +      +P   +   +  +L       +Q  G  V+EA+ G
Sbjct: 178 KNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDD-KWLEGEFIPTVQQRGAAVIEAR-G 234

Query: 266 AGSATLSMAYAAA 278
           A SA  S A AA 
Sbjct: 235 ASSA-ASAANAAI 246

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 83/329 (25%), Positives = 130/329 (39%), Gaps = 37/329 (11%)

Query: 44  SPGFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVR 100
            P  KV V+G    G+   +++L K   L   L L DVV     G   D+ H        
Sbjct: 1   KPRNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH------GS 52

Query: 101 GFLGQQQLE-----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
            FL   ++E            +VI+ AG  +  G +R DL   N  I K +   + K  P
Sbjct: 53  AFLKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP 112

Query: 156 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV 214
            AI+ ++SNPV+    I   V  K+      R++G    LD  R    +AE LG+ P  V
Sbjct: 113 NAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSV 168

Query: 215 DVPVVGGH--------AGVTI--LPLLSQVK-PSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
              ++G H        +GV +  + L            P +   +  ++ +   EV++ K
Sbjct: 169 HGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK 228

Query: 264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEE 323
              G  + ++  + A   DA LR       V         + +  F +    LG  GI  
Sbjct: 229 ---GYTSWAIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITH 285

Query: 324 IYSLGPLNEYERAGLEKAKKELAGSIQKG 352
           +    PL E E+  L+K+   L   +QK 
Sbjct: 286 VIKQ-PLTEEEQEKLQKSADTLW-EVQKQ 312

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 71/259 (27%), Positives = 104/259 (40%), Gaps = 42/259 (16%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-- 98
            V + GAAG IG  L        +     P++  LHL D+         +  ++   +  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI------PPAMKALEGVVMEL 53

Query: 99  -------VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA 151
                  ++G +     E+A   +D+ I+    PRKPGM R DL   NA I K   E + 
Sbjct: 54  QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALN 113

Query: 152 KCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLD 210
           K   P   V ++ NP N+   IA    K      PK    +T LD  RA   VA  LG+ 
Sbjct: 114 KVAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 211 PREV-DVPVVGGHAGVTILPLLSQVK----PSCSLTPTEIDY------LTDRIQNGGTEV 259
             +V +V + G H+  T +P LS                +D           +Q  G  +
Sbjct: 171 VSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAI 229

Query: 260 VEAKTGAGSATLSMAYAAA 278
           ++ + GA SA  S A A A
Sbjct: 230 IKKR-GASSA-ASAAKAIA 246

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 12/144 (8%)

Query: 110 DALTGMDIVIIPAGVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           D     DI++I AG    PG T  R DL   NA I++ +   I K   +A++ LI+NP++
Sbjct: 64  DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD 123

Query: 168 STVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
             V IAA  F     Y   +++G  TMLD  R    VA+  G+DP+ V   V+G H G  
Sbjct: 124 IAVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSH 178

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTD 250
             P+ S V    ++    +D L  
Sbjct: 179 AFPVWSLV----NIAGLPLDELEA 198

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 65/253 (25%), Positives = 105/253 (41%), Gaps = 40/253 (15%)

Query: 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 173
             D+V+I AG P+KPG TR DL   N  I K++   +       I  + SNPV+    I 
Sbjct: 73  DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----IL 128

Query: 174 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH---------- 222
                K+  +  +R++G  T LD  R    ++E L +DPR V   ++G H          
Sbjct: 129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSH 188

Query: 223 AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 282
           A V  +PL   ++ +      ++D + + +++   E++E K   G+    +A A A+   
Sbjct: 189 ANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK---GATYYGIAMALARITK 245

Query: 283 ACLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNE 332
           A L            L G  G  +            +      + R GI EI  L PLN+
Sbjct: 246 AILNNENAVLPVSAYLEGQYGEEDV-----------YIGVPAVVNRNGIREIVEL-PLND 293

Query: 333 YERAGLEKAKKEL 345
            E+     +   L
Sbjct: 294 DEKQKFAHSADVL 306

Length = 315

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 80/326 (24%), Positives = 139/326 (42%), Gaps = 39/326 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTNAVVRGFLGQ 105
           KV+V+G  G +G  +A  +    L   L L DV      G   D+ H         FL +
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH------AAAFLPR 91

Query: 106 QQL----EDALT-GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
            ++    + A+T G D+ I+ AG  + PG +R +L   N  + + +   +AK  P  I+ 
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           ++SNPV+    +   V  K+  +   R++G  T LD  R    +A+ L ++ ++V   +V
Sbjct: 152 IVSNPVD----VLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207

Query: 220 GGH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
           G H              GV +L  L   K   +     ++ +   + +   EV++ K   
Sbjct: 208 GEHGDSSVALWSSVSVGGVPVLSFLE--KQQIAYEKETLEEIHRAVVDSAYEVIKLK--- 262

Query: 267 GSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFAS-KVRLGRAGIEEIY 325
           G  + ++ Y+ A    + LR  R    V   A     + E   F S   +LGR G+  + 
Sbjct: 263 GYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVV 322

Query: 326 SLGPLNEYERAGLEKAKKELAGSIQK 351
           ++  L + E   L K+ K L     +
Sbjct: 323 NV-HLTDEEAERLRKSAKTLWEVQSQ 347

Length = 350

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 72/258 (27%), Positives = 106/258 (41%), Gaps = 37/258 (14%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISH--MDTN-A 97
           +V V GAAG IG  L        ML K  P++  LHL D+     V   +    MD    
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGVVMELMDCAFP 58

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           ++ G +       A T +D+ I+    PRK GM R DL + N  I K     + K   K 
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-D 215
             V ++ NP N+   + +     +    PK    +T LD  RA   VAE  G+   +V +
Sbjct: 119 CKVLVVGNPANTNALVLSNYAPSI---PPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175

Query: 216 VPVVGGHAGVTILPLLSQ--VKPSCSLTPTEIDYLTDR----------IQNGGTEVVEAK 263
           V + G H+  T  P ++   V       P   + + D           +Q  G  ++ A+
Sbjct: 176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVR-EAIKDDAYLDGEFITTVQQRGAAIIRAR 233

Query: 264 TGAGSATLSMAYAAAKFA 281
                  LS A +AAK A
Sbjct: 234 ------KLSSALSAAKAA 245

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI---AKCCPKA 157
           G +   +LE+A   +D   + A VP KPG  R DL   N  I K   E +   AK   K 
Sbjct: 47  GTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
           +V  I NPVN+   +A     K+     +    + MLD  RA + +A  L +    +   
Sbjct: 107 LV--IGNPVNTNCLVAMLHAPKL---SAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161

Query: 218 VVGGHAGVTILPLLSQV 234
           VV G+   +++  L+  
Sbjct: 162 VVWGNHAESMVADLTHA 178

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 62.6 bits (153), Expect = 6e-11
 Identities = 67/260 (25%), Positives = 107/260 (41%), Gaps = 45/260 (17%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 94
           +V V GAAG I   L        +     P++  LHL D+   P      GV  ++   D
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDI--PPALKALEGVVMEL--QD 57

Query: 95  TN-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
               +++  +     E+A   +D+ I+   +PRK GM R DL   N  I K   E + K 
Sbjct: 58  CAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKY 117

Query: 154 CPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKR-LLGVTMLDVVRANTFVAEVLGLDP 211
             K + V ++ NP N+   I  +    +    PK     +T LD  RA + +A  LG+  
Sbjct: 118 AKKNVKVLVVGNPANTNALILLKYAPSI----PKENFTALTRLDHNRAKSQIALKLGVPV 173

Query: 212 REV-DVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTD----RIQNGGTEV 259
            +V +V + G H+  T  P ++      +              +L       +Q  G  V
Sbjct: 174 SDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV 232

Query: 260 VEAKTGAGSATLSMAYAAAK 279
           ++A+       LS A +AAK
Sbjct: 233 IKAR------KLSSAMSAAK 246

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 61/252 (24%), Positives = 95/252 (37%), Gaps = 31/252 (12%)

Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        M     P++  L L ++        GV  ++   +  
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMEL---EDC 58

Query: 97  A--VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C 153
           A  ++   +       A    D  ++    PR PGM R DL   N  I     + +    
Sbjct: 59  AFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 154 CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRE 213
                V ++ NP N+   IA +    +    P     +T LD  RA + +A+  G+   +
Sbjct: 119 SRDVKVLVVGNPCNTNALIAMKNAPDI---PPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 214 VDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGA 266
           V   V+ G+   T  P  +            I       D     +Q  G  +++A+ GA
Sbjct: 176 VKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-GA 234

Query: 267 GSATLSMAYAAA 278
            SA  S A AA 
Sbjct: 235 SSAA-SAANAAI 245

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKA 157
           ++G +    + +A  G++I ++  G PRK GM R D+ + N  I K+    + K   P  
Sbjct: 43  LKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDC 102

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DV 216
            V +++NP N+   I  E    +     K +  +T LD  RA   ++E LG+   +V +V
Sbjct: 103 KVLVVANPANTNALILKEFAPSI---PEKNITCLTRLDHNRALGQISERLGVPVSDVKNV 159

Query: 217 PVVGGHA 223
            + G H+
Sbjct: 160 IIWGNHS 166

Length = 309

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 67/258 (25%), Positives = 104/258 (40%), Gaps = 45/258 (17%)

Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV- 99
           +VAV GAAG IG  L        ML K  P++  L L ++   P + A         VV 
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVI--LQLLEI--PPALKA------LEGVVM 55

Query: 100 ----------RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG 149
                      G +       A    D+ ++    PR PGM R DL   N  I     + 
Sbjct: 56  ELDDCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKA 115

Query: 150 IAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG 208
           + +   + + V ++ NP N+   IA +    +     +    +T LD  RA + +A   G
Sbjct: 116 LNEVAARDVKVLVVGNPANTNALIAMKNAPDL---PAENFTAMTRLDHNRALSQLAAKAG 172

Query: 209 LDPREV-DVPVVGGHAGVTILPLLSQV----KPSCSLTPTEIDYLTD----RIQNGGTEV 259
           +   ++  + V G H+  T  P         KP+  +   +  +L D     +Q  G  +
Sbjct: 173 VPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQ-AWLEDTFIPTVQKRGAAI 230

Query: 260 VEAKTGAGSATLSMAYAA 277
           +EA+ GA SA  S A AA
Sbjct: 231 IEAR-GASSAA-SAANAA 246

Length = 326

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PLN00106	323	malate dehydrogenase	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
PLN02602	350	lactate dehydrogenase	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
PLN00135	309	malate dehydrogenase	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.97
PRK15076	431	alpha-galactosidase; Provisional	99.97
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.97
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.97
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.95
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.95
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.84
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.86
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.73
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.64
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.52
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.46
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.46
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.45
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.41
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.41
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.4
PLN00198	338	anthocyanidin reductase; Provisional	98.4
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.38
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.37
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.35
PLN02650	351	dihydroflavonol-4-reductase	98.35
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.35
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.35
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.34
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.34
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.32
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.32
PLN02427	386	UDP-apiose/xylose synthase	98.3
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.3
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.28
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.27
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.24
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.22
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.2
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.16
PLN02206	442	UDP-glucuronate decarboxylase	98.15
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.14
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.13
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.13
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.08
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.07
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	98.05
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.03
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.03
CHL00194	317	ycf39 Ycf39; Provisional	98.03
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.03
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.03
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.02
PLN02572	442	UDP-sulfoquinovose synthase	98.02
PLN02260	668	probable rhamnose biosynthetic enzyme	98.02
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.99
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	97.98
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	97.96
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	97.96
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	97.96
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.95
PLN02214	342	cinnamoyl-CoA reductase	97.93
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.93
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.93
PRK06194	287	hypothetical protein; Provisional	97.93
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	97.88
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.86
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.86
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.85
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	97.85
PLN02778	298	3,5-epimerase/4-reductase	97.8
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.8
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.79
PRK10675	338	UDP-galactose-4-epimerase; Provisional	97.78
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.78
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.77
PLN02653	340	GDP-mannose 4,6-dehydratase	97.75
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.74
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	97.74
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.69
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	97.68
PLN02583	297	cinnamoyl-CoA reductase	97.67
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	97.67
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.65
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.65
PLN02253	280	xanthoxin dehydrogenase	97.64
PLN03209	576	translocon at the inner envelope of chloroplast su	97.64
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.63
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.62
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.61
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.61
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.6
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.6
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.6
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.59
PRK12829	264	short chain dehydrogenase; Provisional	97.54
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.54
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.51
PLN02240	352	UDP-glucose 4-epimerase	97.51
PRK08267	260	short chain dehydrogenase; Provisional	97.5
PRK07201	657	short chain dehydrogenase; Provisional	97.5
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.47
PRK08643	256	acetoin reductase; Validated	97.46
PRK07417	279	arogenate dehydrogenase; Reviewed	97.45
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	97.44
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	97.44
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.43
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.39
PRK07102	243	short chain dehydrogenase; Provisional	97.39
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.39
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.39
PLN02686	367	cinnamoyl-CoA reductase	97.39
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.38
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.37
PRK05717	255	oxidoreductase; Validated	97.37
PRK14982	340	acyl-ACP reductase; Provisional	97.35
PRK06914	280	short chain dehydrogenase; Provisional	97.35
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.34
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.34
PRK06172	253	short chain dehydrogenase; Provisional	97.33
PRK06182	273	short chain dehydrogenase; Validated	97.33
PRK06482	276	short chain dehydrogenase; Provisional	97.33
PRK06180	277	short chain dehydrogenase; Provisional	97.33
PRK12320	699	hypothetical protein; Provisional	97.32
PRK07326	237	short chain dehydrogenase; Provisional	97.3
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.29
PRK05875	276	short chain dehydrogenase; Provisional	97.29
PRK08278	273	short chain dehydrogenase; Provisional	97.29
PRK08655	437	prephenate dehydrogenase; Provisional	97.28
PRK12827	249	short chain dehydrogenase; Provisional	97.28
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.28
PRK05876	275	short chain dehydrogenase; Provisional	97.27
PRK07985	294	oxidoreductase; Provisional	97.27
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.27
PRK08265	261	short chain dehydrogenase; Provisional	97.27
PRK07067	257	sorbitol dehydrogenase; Provisional	97.27
PRK05865	854	hypothetical protein; Provisional	97.26
PRK10538	248	malonic semialdehyde reductase; Provisional	97.25
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.25
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.24
PRK07814	263	short chain dehydrogenase; Provisional	97.24
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.24
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.24
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.24
PRK12937	245	short chain dehydrogenase; Provisional	97.23
PRK06924	251	short chain dehydrogenase; Provisional	97.22
PRK07680	273	late competence protein ComER; Validated	97.21
PRK07069	251	short chain dehydrogenase; Validated	97.21
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	97.21
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.2
PRK07856	252	short chain dehydrogenase; Provisional	97.19
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.19
PRK09135	249	pteridine reductase; Provisional	97.19
PLN02688	266	pyrroline-5-carboxylate reductase	97.18
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	97.14
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.14
PRK05866	293	short chain dehydrogenase; Provisional	97.14
PRK07806	248	short chain dehydrogenase; Provisional	97.13
PRK07576	264	short chain dehydrogenase; Provisional	97.13
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.13
PRK07063	260	short chain dehydrogenase; Provisional	97.13
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.12
PRK12939	250	short chain dehydrogenase; Provisional	97.12
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.12
PRK12828	239	short chain dehydrogenase; Provisional	97.11
PRK07832	272	short chain dehydrogenase; Provisional	97.11
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.1
PRK06128	300	oxidoreductase; Provisional	97.1
PRK07890	258	short chain dehydrogenase; Provisional	97.1
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.09
PRK06841	255	short chain dehydrogenase; Provisional	97.08
PRK12746	254	short chain dehydrogenase; Provisional	97.07
PRK05993	277	short chain dehydrogenase; Provisional	97.07
PRK06701	290	short chain dehydrogenase; Provisional	97.06
PRK06545	359	prephenate dehydrogenase; Validated	97.06
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.06
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.06
PLN02256	304	arogenate dehydrogenase	97.06
PRK05650	270	short chain dehydrogenase; Provisional	97.05
PRK08589	272	short chain dehydrogenase; Validated	97.05
PLN02260	668	probable rhamnose biosynthetic enzyme	97.05
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.05
PRK06500	249	short chain dehydrogenase; Provisional	97.04
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.04
PLN02996	491	fatty acyl-CoA reductase	97.04
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	97.03
PRK07024	257	short chain dehydrogenase; Provisional	97.02
PRK06179	270	short chain dehydrogenase; Provisional	97.02
PLN02712	667	arogenate dehydrogenase	97.01
PRK06181	263	short chain dehydrogenase; Provisional	97.01
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.01
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.01
PRK07774	250	short chain dehydrogenase; Provisional	97.0
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.99
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.99
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.98
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.97
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.96
PRK08263	275	short chain dehydrogenase; Provisional	96.96
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.94
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.94
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.94
TIGR01746	367	Thioester-redct thioester reductase domain. It has	96.93
PRK12480	330	D-lactate dehydrogenase; Provisional	96.93
PRK06138	252	short chain dehydrogenase; Provisional	96.93
PF11975	232	Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term	96.92
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.92
PRK06398	258	aldose dehydrogenase; Validated	96.92
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.92
PRK05854	313	short chain dehydrogenase; Provisional	96.92
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.92
PRK08507	275	prephenate dehydrogenase; Validated	96.91
PRK06198	260	short chain dehydrogenase; Provisional	96.91
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.91
PRK09291	257	short chain dehydrogenase; Provisional	96.91
PRK07825	273	short chain dehydrogenase; Provisional	96.9
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.89
PRK06101	240	short chain dehydrogenase; Provisional	96.88
PRK06523	260	short chain dehydrogenase; Provisional	96.88
PRK06949	258	short chain dehydrogenase; Provisional	96.87
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.87
PRK07060	245	short chain dehydrogenase; Provisional	96.87
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	96.87
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.86
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.85
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.85
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.83
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.83
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.83
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.82
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.82
PRK07574	385	formate dehydrogenase; Provisional	96.81
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.81
PRK08628	258	short chain dehydrogenase; Provisional	96.81
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.8
PRK08251	248	short chain dehydrogenase; Provisional	96.8
PRK09072	263	short chain dehydrogenase; Provisional	96.79
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.79
PLN02780	320	ketoreductase/ oxidoreductase	96.78
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.78
PRK12744	257	short chain dehydrogenase; Provisional	96.78
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.78
PRK08339	263	short chain dehydrogenase; Provisional	96.78
PRK12747	252	short chain dehydrogenase; Provisional	96.77
PRK07478	254	short chain dehydrogenase; Provisional	96.77
PRK07831	262	short chain dehydrogenase; Provisional	96.77
PRK08264	238	short chain dehydrogenase; Validated	96.77
PRK08219	227	short chain dehydrogenase; Provisional	96.76
PRK07109	334	short chain dehydrogenase; Provisional	96.76
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.76
PRK12742	237	oxidoreductase; Provisional	96.76
PRK09242	257	tropinone reductase; Provisional	96.76
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.75
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.75
PRK05855	582	short chain dehydrogenase; Validated	96.74
PRK07035	252	short chain dehydrogenase; Provisional	96.74
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.74
PRK05693	274	short chain dehydrogenase; Provisional	96.73
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.73
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.73
PRK08226	263	short chain dehydrogenase; Provisional	96.73
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.73
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.73
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.72
PTZ00431	260	pyrroline carboxylate reductase; Provisional	96.72
PRK08818	370	prephenate dehydrogenase; Provisional	96.7
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.69
PRK06197	306	short chain dehydrogenase; Provisional	96.69
PRK12367	245	short chain dehydrogenase; Provisional	96.69
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.66
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.65
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.65
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.64
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.64
PRK09186	256	flagellin modification protein A; Provisional	96.63
PRK09009	235	C factor cell-cell signaling protein; Provisional	96.63
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.63
PLN03139	386	formate dehydrogenase; Provisional	96.62
PRK07023	243	short chain dehydrogenase; Provisional	96.6
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.6
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.6
PRK06139	330	short chain dehydrogenase; Provisional	96.59
PRK08703	239	short chain dehydrogenase; Provisional	96.59
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.59
PRK06114	254	short chain dehydrogenase; Provisional	96.58
PRK08324	681	short chain dehydrogenase; Validated	96.58
PLN00016	378	RNA-binding protein; Provisional	96.56
PRK13243	333	glyoxylate reductase; Reviewed	96.56
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.56
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.55
COG2910	211	Putative NADH-flavin reductase [General function p	96.54
PRK08177	225	short chain dehydrogenase; Provisional	96.54
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.53
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.53
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	96.53
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.5
PRK07062	265	short chain dehydrogenase; Provisional	96.5
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.49
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.49
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.49
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.49
PRK12743	256	oxidoreductase; Provisional	96.48
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.48
PRK07074	257	short chain dehydrogenase; Provisional	96.48
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.47
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.46
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.46
PRK05867	253	short chain dehydrogenase; Provisional	96.46
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.46
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	96.44
PRK06196	315	oxidoreductase; Provisional	96.43
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.42
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.41
PRK05884	223	short chain dehydrogenase; Provisional	96.4
PRK06057	255	short chain dehydrogenase; Provisional	96.4
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.39
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.38
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.38
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.38
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.37
PRK06123	248	short chain dehydrogenase; Provisional	96.33
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.32
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.32
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.26
PRK05599	246	hypothetical protein; Provisional	96.25
PRK07201	657	short chain dehydrogenase; Provisional	96.25
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	96.25
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.24
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	96.23
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.23
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.22
PRK07577	234	short chain dehydrogenase; Provisional	96.22
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.22
PRK07454	241	short chain dehydrogenase; Provisional	96.22
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.21
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.21
PLN02712	667	arogenate dehydrogenase	96.19
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.18
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.17
PRK07904	253	short chain dehydrogenase; Provisional	96.17
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.15
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.15
PLN02494	477	adenosylhomocysteinase	96.15
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.15
PRK09134	258	short chain dehydrogenase; Provisional	96.1
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.09
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.07
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.07
PRK08605	332	D-lactate dehydrogenase; Validated	96.06
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.06
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.05
PRK07677	252	short chain dehydrogenase; Provisional	96.05
PLN02928	347	oxidoreductase family protein	96.04
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.04
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.03
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.02
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.02
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.02
PRK07775	274	short chain dehydrogenase; Provisional	96.01
PLN02503	605	fatty acyl-CoA reductase 2	96.01
PRK05872	296	short chain dehydrogenase; Provisional	96.0
PRK06483	236	dihydromonapterin reductase; Provisional	95.99
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.97
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.93
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.93
PRK07578	199	short chain dehydrogenase; Provisional	95.93
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	95.89
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.89
PRK08862	227	short chain dehydrogenase; Provisional	95.89
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	95.88
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.88
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.85
PRK06953	222	short chain dehydrogenase; Provisional	95.84
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.84
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	95.83
PRK08017	256	oxidoreductase; Provisional	95.81
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.81
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.8
PRK08223	287	hypothetical protein; Validated	95.77
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.76
PRK06484	520	short chain dehydrogenase; Validated	95.76
PRK06484	520	short chain dehydrogenase; Validated	95.75
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.72
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.71
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.69
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.67
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	95.67
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.64
PRK09496	453	trkA potassium transporter peripheral membrane com	95.62
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.61
PRK06125	259	short chain dehydrogenase; Provisional	95.6
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	95.59
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.56
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.56
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.55
PRK08291	330	ectoine utilization protein EutC; Validated	95.55
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	95.54
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.53
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.53
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.5
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.48
PRK08618	325	ornithine cyclodeaminase; Validated	95.48
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.47
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	95.46
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	95.45
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.42
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	95.41
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.38
PRK06940	275	short chain dehydrogenase; Provisional	95.37
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.37
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.33
PRK07340	304	ornithine cyclodeaminase; Validated	95.3
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.3
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.29
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.29
PLN02383	344	aspartate semialdehyde dehydrogenase	95.28
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.27
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.25
PRK08303	305	short chain dehydrogenase; Provisional	95.24
PRK06407	301	ornithine cyclodeaminase; Provisional	95.24
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.24
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.24
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.23
PRK06141	314	ornithine cyclodeaminase; Validated	95.18
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.13
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.09
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.08
PRK06436	303	glycerate dehydrogenase; Provisional	95.05
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	95.03
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.02
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.02
PRK07791	286	short chain dehydrogenase; Provisional	95.02
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.93
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	94.9
PRK07877	722	hypothetical protein; Provisional	94.89
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	94.88
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	94.87
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	94.85
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.81
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.8
PRK07041	230	short chain dehydrogenase; Provisional	94.79
PRK07589	346	ornithine cyclodeaminase; Validated	94.77
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	94.76
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.75
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	94.74
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.7
PLN02306	386	hydroxypyruvate reductase	94.67
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.67
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.61
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.6
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	94.59
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.55
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	94.54
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.53
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.51
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.5
PRK06823	315	ornithine cyclodeaminase; Validated	94.5
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.49
PLN00203	519	glutamyl-tRNA reductase	94.44
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.44
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	94.41
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.39
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	94.36
PRK13529	563	malate dehydrogenase; Provisional	94.33
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.33
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.31

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=5.7e-69  Score=512.61  Aligned_cols=309  Identities=68%  Similarity=1.080  Sum_probs=281.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||+||||+|+||+++++.|+.+++++||+|+|++.++|+++||+|+..+..++.+.+++|++++++|||+||++||.||
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999998899999999999999999999999998778999999999744456653233566799999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHH
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~  206 (358)
                      ++||+|+|++..|+++++++++.|++++|++|+|++|||+|+||+++++++++++++|++||||+|.|||+|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988889999999999999999889999999999999


Q ss_pred             hCCCCCCCceEEEEec-CCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHHHHH
Q 018265          207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL  285 (358)
Q Consensus       207 l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~ai~  285 (358)
                      +|+++++|+++||||| |+ +++|+||++.+...++++++++|.++++++|++|++.|.|||+|+||+|.++++++++|+
T Consensus       161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl  239 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL  239 (310)
T ss_pred             hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 78 999999999875456555689999999999999999866789999999999999999999


Q ss_pred             ccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018265          286 RGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV  356 (358)
Q Consensus       286 ~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~  356 (358)
                      +|+.+++.++++++++|+-.+++|+|+||++|++|+++++++++|+++|+++|++|++.|++.+++|+.|+
T Consensus       240 ~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~  310 (310)
T cd01337         240 RGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV  310 (310)
T ss_pred             HhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            88655556888887776535789999999999999999999525999999999999999999999999885

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.8e-68  Score=510.02  Aligned_cols=310  Identities=60%  Similarity=0.963  Sum_probs=281.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK  127 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~  127 (358)
                      ||+||||+|+||+++++.|+.+++++||+|+|++++.|+++||+|......++.+.+.+|++++++|||+||+++|.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999988999999999999999999999999988889999999986433455432223456899999999999999999


Q ss_pred             CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHh
Q 018265          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       128 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l  207 (358)
                      +|++|++++..|++++++++++|++++|++++|++|||+|++++++++++++.+++|++||||+|.|||+||++++|+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888899999999999999998899999999999999


Q ss_pred             CCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHHHHHcc
Q 018265          208 GLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG  287 (358)
Q Consensus       208 ~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~ai~~~  287 (358)
                      |+++++|+++||||||+++++|+||++++...++++++++|.++++++|++|++.|.|||+++||+|.++++++++|+++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~  240 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG  240 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence            99999999999999986689999999986434566668999999999999999986678999999999999999999975


Q ss_pred             CCCCCcEEEeeEEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018265          288 LRGDAGVIECAYVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR  357 (358)
Q Consensus       288 ~~~~~~v~~~s~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  357 (358)
                      ..+++.++|+++++|+| .+++|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|++
T Consensus       241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~  311 (312)
T TIGR01772       241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA  311 (312)
T ss_pred             hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            43344689988889998 78999999999999999999994389999999999999999999999999986

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=3.5e-67  Score=495.39  Aligned_cols=297  Identities=40%  Similarity=0.608  Sum_probs=270.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +||+|||| |+||+++++.|+.+++..|++|+|+++  ++|.++||.|+.+.  ...+.. .+.| +++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCC-hhhhcCCCEEEEeC
Confidence            59999999 999999999998888888999999996  89999999999753  234433 2245 48899999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~  201 (358)
                      |.||||||+|+|++..|++|+++++++|.++|||++++++|||+|++||++    ++.+++|++||||+ |.||++||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998765    78899999999999 8999999999


Q ss_pred             HHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----C----CChhHHHHHHHHHhcCcceeeecccCCCcccccH
Q 018265          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM  273 (358)
Q Consensus       202 ~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~  273 (358)
                      ++|+++|+++++|+++|+|+||+ ++||+||++++.+    +    .+++++++|.++|+++|++|+++| |.| ++||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            99999999999999999999999 9999999999853    1    233567899999999999999987 444 99999


Q ss_pred             HHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018265          274 AYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK  351 (358)
Q Consensus       274 A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~  351 (358)
                      |.++++++++|++|++   +++|++ +++|+| ++++|+|+||++|++|+++++++ +|+++|+++|+.|++.||+.++.
T Consensus       231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~  306 (313)
T COG0039         231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIEL  306 (313)
T ss_pred             HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999974   589997 789999 89999999999999999999996 99999999999999999999999


Q ss_pred             hhhhhh
Q 018265          352 GVSFVR  357 (358)
Q Consensus       352 ~~~~~~  357 (358)
                      +.+++.
T Consensus       307 ~~~~~~  312 (313)
T COG0039         307 VKELVL  312 (313)
T ss_pred             HHHhhc
Confidence            887764

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=2.7e-66  Score=496.80  Aligned_cols=317  Identities=77%  Similarity=1.202  Sum_probs=288.6

Q ss_pred             cccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC
Q 018265           34 GRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT  113 (358)
Q Consensus        34 ~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~  113 (358)
                      +-+.||++++..+.||+||||+|+||+++++.|+.++++.||+|+|++++.|+++||.|+.....+..++.++|++++++
T Consensus         6 ~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~   85 (323)
T PLN00106          6 SLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALK   85 (323)
T ss_pred             hhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcC
Confidence            45799999999999999999989999999999999999999999999888899999999876445665445678889999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeee
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~  193 (358)
                      |||+||+++|.|+++|++|.+++..|+++++++++++++++|+++++++|||+|.+++++++++++.+++|++|+||+|.
T Consensus        86 ~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~  165 (323)
T PLN00106         86 GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTT  165 (323)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEec
Confidence            99999999999999999999999999999999999999999999999999999976666677778999999999999988


Q ss_pred             ccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccH
Q 018265          194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM  273 (358)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~  273 (358)
                      ||++||++++|+++|+++.+|+++|+|+||++++||+||++.+...++++++++|.++++++|++|++.|.|||+++||+
T Consensus       166 LDs~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~  245 (323)
T PLN00106        166 LDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSM  245 (323)
T ss_pred             chHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHH
Confidence            99999999999999999999999999999766899999999764446666789999999999999999755679999999


Q ss_pred             HHHHHHHHHHHHccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018265          274 AYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQ  350 (358)
Q Consensus       274 A~ai~~ii~ai~~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  350 (358)
                      |.++++++++|++|+++++.++||++++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus       246 a~a~~~ii~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~  322 (323)
T PLN00106        246 AYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE  322 (323)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999998766667999998877764349999999999999999999549999999999999999998875

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=1e-63  Score=478.69  Aligned_cols=313  Identities=60%  Similarity=0.968  Sum_probs=280.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      -++.||+||||+|+||+++++.|+..++.+||+|+|++.+.++++||.|+.....+..+....+++++++|||+||+++|
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            35669999998899999999999988989999999996589999999998653344433221343689999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~l  203 (358)
                      .|+++|++|.+++..|+++++++++++++++|+++|+++|||+|++++++.+.+++.+++|++||||++.|||+||++++
T Consensus        86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l  165 (321)
T PTZ00325         86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV  165 (321)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999886444568899999999999779999999999


Q ss_pred             HHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHHH
Q 018265          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA  283 (358)
Q Consensus       204 A~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~a  283 (358)
                      |+++|+++++|+++||||||++++||+||.+..  ++++++++++.++++++|++|++.|+|||+|+||+|.++++++++
T Consensus       166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a  243 (321)
T PTZ00325        166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS  243 (321)
T ss_pred             HHHhCcChhheEEEEEeecCCcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence            999999999999999999998459999999933  566777999999999999999998767799999999999999999


Q ss_pred             HHccCCCCCcEEEeeEEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 018265          284 CLRGLRGDAGVIECAYVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK  358 (358)
Q Consensus       284 i~~~~~~~~~v~~~s~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  358 (358)
                      |++|..+++.++|+++++|+| .+++|+|+||++|++|+++++++++|+++|+++|++|++.|++.+++++.|+++
T Consensus       244 il~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~  319 (321)
T PTZ00325        244 VLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKKNIEKGLEFARK  319 (321)
T ss_pred             HHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998744445688998889999 689999999999999999999933999999999999999999999999999875

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=9.3e-64  Score=477.50  Aligned_cols=286  Identities=28%  Similarity=0.416  Sum_probs=259.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC---CeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|+..+   ..++...  .|+ ++++|||+||++|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~y-~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GDY-DDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CCH-HHhCCCCEEEECC
Confidence            7999998 999999999999999999999999987  78999999997542   2455542  465 8899999999999


Q ss_pred             CCCCCCCCC--HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          123 GVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       123 g~~~~~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      |.|++|||+  |+|++..|++++++++++|++++|++++|++|||+|+|||++    ++.+|||++||||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999998765    78899999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C---------CChhHHHHHHHHHhcCcceeeecccCCCcc
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S---------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t  269 (358)
                      ++++|+++|+++++|+++||||||+ +++|+||++++++ +         .++.++++|.++++++|++|++.   ||+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---KG~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR---KGWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHc---cCee
Confidence            9999999999999999999999998 9999999998753 1         11224789999999999999994   5899


Q ss_pred             cccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHH
Q 018265          270 TLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG  347 (358)
Q Consensus       270 ~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  347 (358)
                      +|++|.++++++++|++|.+   .++|++ +++|+| ++++|+|+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~  304 (307)
T cd05290         229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE  304 (307)
T ss_pred             hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998864   588887 678998 78999999999999999999995 9999999999999999997


Q ss_pred             HH
Q 018265          348 SI  349 (358)
Q Consensus       348 ~~  349 (358)
                      .+
T Consensus       305 ~~  306 (307)
T cd05290         305 TI  306 (307)
T ss_pred             Hh
Confidence            64

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-62  Score=471.97  Aligned_cols=310  Identities=57%  Similarity=0.889  Sum_probs=278.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      |||+||||+|.||+++++.+.. .+...+++|+|+++ ..++++|+.|......++.+ ..+|++++++|+|+||+++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            7999999999999999999865 56778999999877 67788999985322334432 245767899999999999999


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHH
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA  204 (358)
                      ++++|++|.+++..|++++++++++|++++|+++++++|||+|+||+++++++++++++|++||||+|.||++|+++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888899999999999998899999999999


Q ss_pred             HHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHHHH
Q 018265          205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC  284 (358)
Q Consensus       205 ~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~ai  284 (358)
                      +++|+++++|+++||||||++++||+||++ -+.+++++++++|.++++++|++|++.|.|+|+|+||+|.++++++++|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai  238 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence            999999999999999999776899999999 3335777779999999999999999987677999999999999999999


Q ss_pred             HccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 018265          285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK  358 (358)
Q Consensus       285 ~~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  358 (358)
                      ++++++++.++|+++++|+-.+++|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|+.|+++
T Consensus       239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~  312 (312)
T PRK05086        239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_pred             HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            98866566799988777753468999999999999999999955999999999999999999999999999975

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=4.2e-63  Score=475.48  Aligned_cols=296  Identities=28%  Similarity=0.371  Sum_probs=262.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC-C-CeEEEEeCCCcHHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al~  113 (358)
                      +|.||+||||+|+||+++++.|+..++++     ||+|+|+++    ++|+++||+|+.. . ..++..  +.| +++++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   78 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAFK   78 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHhC
Confidence            57899999988999999999999999998     999999954    6999999999863 1 223332  344 58899


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~-~~p~~kviG~  191 (358)
                      |||+||++||.|+++||+|.|++..|++++++++++|++++| ++++|++|||+|++||++    ++.+ +||++||||+
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~  154 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSAM  154 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEe
Confidence            999999999999999999999999999999999999999998 999999999999998775    6788 9999999999


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCCCcccccccccCCCC----C-CChhH--HHHHHHHHhcCcceeeecc
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC----S-LTPTE--IDYLTDRIQNGGTEVVEAK  263 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~----~-~~~~~--~~~l~~~v~~~~~~ii~~~  263 (358)
                      |.||++||++++|+++|+++++|+ .+||||||+ +++|+||++++.+    . ++++.  +++|.+++++++++|++. 
T Consensus       155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-  232 (323)
T TIGR01759       155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEA-  232 (323)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhc-
Confidence            999999999999999999999995 679999998 9999999998853    1 33333  579999999999999994 


Q ss_pred             cCCCcccc-cHHHHHHHHHHHHHccCCCCCcEEEee-EEeC-CC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHH
Q 018265          264 TGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVAS-TV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL  338 (358)
Q Consensus       264 ~gkg~t~~-s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l  338 (358)
                        ||+++| ++|.++++++++|++|++. +.++|++ +++| +|  |+++|||+||++|++|++++++.++|+++|+++|
T Consensus       233 --kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l  309 (323)
T TIGR01759       233 --RGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKL  309 (323)
T ss_pred             --cCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHH
Confidence              578999 4779999999999999732 2599998 7899 88  4899999999999999999999339999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 018265          339 EKAKKELAGSIQKG  352 (358)
Q Consensus       339 ~~s~~~l~~~~~~~  352 (358)
                      ++|++.|+++++++
T Consensus       310 ~~sa~~lk~~~~~~  323 (323)
T TIGR01759       310 DATEDELLEEKEEA  323 (323)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999764

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=8.7e-63  Score=472.06  Aligned_cols=290  Identities=26%  Similarity=0.371  Sum_probs=260.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .+||+|||| |+||+++++.|+..++.+||+|+|+++  +.|+++||+|+.... ..+.. .++|| ++++|||+||+++
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECC
Confidence            469999998 999999999999999999999999987  789999999986322 12222 34676 5699999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~  201 (358)
                      |.++++||+|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++    ++++|+|++||||+ |.||++|+++
T Consensus        80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~~  155 (312)
T cd05293          80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFRY  155 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998654    78889999999999 9999999999


Q ss_pred             HHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC------------CCChhHHHHHHHHHhcCcceeeecccCCCcc
Q 018265          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (358)
Q Consensus       202 ~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t  269 (358)
                      ++|+++++++++|+++||||||+ +++|+||++++.+            ..+++++++|.++++++|++|++.   ||+|
T Consensus       156 ~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t  231 (312)
T cd05293         156 LIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKL---KGYT  231 (312)
T ss_pred             HHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHh---cCCc
Confidence            99999999999999999999998 8999999998853            112345889999999999999984   5899


Q ss_pred             cccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 018265          270 TLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA  346 (358)
Q Consensus       270 ~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  346 (358)
                      +||+|.++++++++|++|++   .++|++ +++|.|  +++++||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       232 ~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~  307 (312)
T cd05293         232 SWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLW  307 (312)
T ss_pred             hHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            99999999999999999864   488887 678887  58999999999999999999995 999999999999999999


Q ss_pred             HHHH
Q 018265          347 GSIQ  350 (358)
Q Consensus       347 ~~~~  350 (358)
                      +.++
T Consensus       308 ~~~~  311 (312)
T cd05293         308 EVQK  311 (312)
T ss_pred             HHhh
Confidence            8764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.5e-62  Score=444.07  Aligned_cols=290  Identities=26%  Similarity=0.392  Sum_probs=264.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC---CeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      ..||+|+|+ |+||.+++..++.+++.+||+|+|.++  ++|++|||+|...+   +++..   +.|| .+.+++++||+
T Consensus        20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~lvIi   94 (332)
T KOG1495|consen   20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKLVII   94 (332)
T ss_pred             CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcEEEE
Confidence            569999998 999999999999999999999999988  89999999998642   34432   4686 77899999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      |||..+++|++|++++.+|+.+++.+.+++.+|.||+++|++|||+|+|||+.    ||.+|||.+||||. |+||++||
T Consensus        95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaRF  170 (332)
T KOG1495|consen   95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSARF  170 (332)
T ss_pred             ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHHH
Confidence            99999999999999999999999999999999999999999999999998765    89999999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCC------------CCCChhHHHHHHHHHhcCcceeeecccCCC
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPS------------CSLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~------------~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg  267 (358)
                      |+.++++||++|+++++||+||||+ +.||+||...+.            ...+++.|+++.++|.+.+++|+++|   |
T Consensus       171 ryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK---G  246 (332)
T KOG1495|consen  171 RYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK---G  246 (332)
T ss_pred             HHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---C
Confidence            9999999999999999999999999 899999998763            13566789999999999999999965   8


Q ss_pred             cccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHH
Q 018265          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE  344 (358)
Q Consensus       268 ~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  344 (358)
                      +|+|++|.++++++++|+.|++   ++.|++ .++|.|  .+++|+|+||++|++|+..++.. +|+++|.++|.+|++.
T Consensus       247 yTswaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~t  322 (332)
T KOG1495|consen  247 YTSWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAKT  322 (332)
T ss_pred             chHHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHHH
Confidence            9999999999999999999976   588998 468987  67999999999999999999996 9999999999999999


Q ss_pred             HHHHHHHhh
Q 018265          345 LAGSIQKGV  353 (358)
Q Consensus       345 l~~~~~~~~  353 (358)
                      |.+ +++.+
T Consensus       323 l~~-~q~~l  330 (332)
T KOG1495|consen  323 LLE-AQKSL  330 (332)
T ss_pred             HHH-HHHhc
Confidence            975 44544

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=3.5e-62  Score=473.12  Aligned_cols=291  Identities=24%  Similarity=0.373  Sum_probs=261.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +||+|||+ |+||+++++.|+.+++++||+|+|+++  ++|+++||+|+... ...+.. .++|+ ++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence            69999998 999999999999999999999999987  78999999998632 223332 33576 66999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~  202 (358)
                      .|+++||+|.|++.+|++++++++++|+++||++|+|++|||+|++|+++    ++.+|||++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765    67789999999999 69999999999


Q ss_pred             HHHHhCCCCCCCceEEEEecCCCcccccccccCCCC------------CCChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       203 lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      +|+++|+++++|+++||||||+ +++|+||.+++..            .+++++++++.++++++|++|++   +||+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence            9999999999999999999998 9999999998732            13334578999999999999999   458999


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-C--CccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-T--ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA  346 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~--~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  346 (358)
                      ||+|.++++++++|++|++   .++|++ +++|+| .  +++|+|+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~  342 (350)
T PLN02602        267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW  342 (350)
T ss_pred             HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            9999999999999999975   599998 568988 3  7899999999999999999995 999999999999999999


Q ss_pred             HHHHHh
Q 018265          347 GSIQKG  352 (358)
Q Consensus       347 ~~~~~~  352 (358)
                      +.++..
T Consensus       343 ~~~~~~  348 (350)
T PLN02602        343 EVQSQL  348 (350)
T ss_pred             HHHHHh
Confidence            887654

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-61  Score=466.04  Aligned_cols=298  Identities=22%  Similarity=0.288  Sum_probs=262.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC-C-CeEEEEeCCCcHHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al~  113 (358)
                      +++||+||||+|+||+++++.|...++++     ||+|+|+++    ++|+++||+|+.+ . ..++..  +.+ +++++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~   79 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK   79 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence            56899999988999999999999988888     999999954    6899999999862 1 234432  345 58899


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~-~~p~~kviG~  191 (358)
                      |||+||++||.|+++||+|.|++..|++++++++++|++|+ |++++|++|||+|++||++    ++.+ +||++||||+
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~  155 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTAM  155 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEee
Confidence            99999999999999999999999999999999999999988 7999999999999998775    6777 9999999999


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceE-EEEecCCCcccccccccCCCC----C-CChhH--HHHHHHHHhcCcceeeecc
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSC----S-LTPTE--IDYLTDRIQNGGTEVVEAK  263 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v~~----~-~~~~~--~~~l~~~v~~~~~~ii~~~  263 (358)
                      |.||++||++++|+++++++++|+++ ||||||+ +++|+||++++..    + +++++  +++|.++++++|++|++. 
T Consensus       156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-  233 (326)
T PRK05442        156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA-  233 (326)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC-
Confidence            99999999999999999999999986 5999998 9999999998853    1 34433  568999999999999994 


Q ss_pred             cCCCcccccHHHH-HHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          264 TGAGSATLSMAYA-AAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       264 ~gkg~t~~s~A~a-i~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                        ||+++|++|.+ +++++++|++|.+. +.++|++ +++|+|  |+++|||+||++| +|+++++..++|+++|+++|+
T Consensus       234 --kG~t~~~~a~~~~~~iv~ail~~~~~-~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~  309 (326)
T PRK05442        234 --RGASSAASAANAAIDHVRDWVLGTPE-GDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKID  309 (326)
T ss_pred             --cCCccHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHH
Confidence              58999999999 59999999998531 2599998 569998  5899999999999 999999663499999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 018265          340 KAKKELAGSIQKGVSF  355 (358)
Q Consensus       340 ~s~~~l~~~~~~~~~~  355 (358)
                      +|++.|+++.+.+..+
T Consensus       310 ~s~~~l~~~~~~~~~~  325 (326)
T PRK05442        310 ATLAELEEERDAVKHL  325 (326)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999888765

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=4.4e-61  Score=461.37  Aligned_cols=291  Identities=25%  Similarity=0.410  Sum_probs=263.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .+||+|||| |.||+++++.|+..++++||+|+|+++  ++|+++||.|+... ..++..  ++|+ ++++|||+||+++
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~~-~~~~~adivIita   81 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGDY-SDCKDADLVVITA   81 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCCH-HHhCCCCEEEEec
Confidence            359999998 999999999999999999999999987  78999999998632 234443  3465 7799999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~  201 (358)
                      |.|+++|++|.|++..|+++++++++.+++++|++|+|++|||+|++|+++    ++++++|++||||+ |.||+.|+++
T Consensus        82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~~  157 (315)
T PRK00066         82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFRY  157 (315)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998764    67789999999999 7999999999


Q ss_pred             HHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-----------CCChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       202 ~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      ++|+++|+++++|+++||||||+ +++|+||++++++           .+++++++++.++++++++++++.   ||+++
T Consensus       158 ~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kg~t~  233 (315)
T PRK00066        158 MLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK---KGATY  233 (315)
T ss_pred             HHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc---CCeeh
Confidence            99999999999999999999998 8999999998742           144466889999999999999994   57999


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS  348 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~  348 (358)
                      ||+|.++++++++|+++++   .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|++.|++.
T Consensus       234 ~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~~  309 (315)
T PRK00066        234 YGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEI  309 (315)
T ss_pred             HHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   588997 679999 78999999999999999999995 99999999999999999998


Q ss_pred             HHHh
Q 018265          349 IQKG  352 (358)
Q Consensus       349 ~~~~  352 (358)
                      ++..
T Consensus       310 ~~~~  313 (315)
T PRK00066        310 MDEA  313 (315)
T ss_pred             HHHh
Confidence            8754

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.4e-60  Score=433.26  Aligned_cols=337  Identities=68%  Similarity=1.066  Sum_probs=313.0

Q ss_pred             hHHHHHHHhhcCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHH
Q 018265            9 NQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA   88 (358)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~   88 (358)
                      .+++.+..+++.+            +...|.+.+..+..||+|.||+|-||+.+.++|+.+++.+++.|||+....|.+.
T Consensus         3 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaa   70 (345)
T KOG1494|consen    3 LKSLIRSSASLSS------------GPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAA   70 (345)
T ss_pred             hHHHHHhhhhhcc------------CCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccc
Confidence            3455566666632            3344555666777899999999999999999999999999999999998999999


Q ss_pred             HHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265           89 DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus        89 dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                      ||.|..+...+.++.+...+++|+++||+|||.||+||||||+|.|++..|+.|+++++..+.++||++.+.++|||+|.
T Consensus        71 DlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNs  150 (345)
T KOG1494|consen   71 DLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNS  150 (345)
T ss_pred             cccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccc
Confidence            99999988888888777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCC-CCCceEEEEecCCCcccccccccCCCCCCChhHHHH
Q 018265          169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY  247 (358)
Q Consensus       169 ~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~-~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~  247 (358)
                      ..+++++++++.+.|+++|++|+|.||..|.+.++++.++++| ++++++|+|+|.+.|++|++|+..+...+++++++.
T Consensus       151 tVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~  230 (345)
T KOG1494|consen  151 TVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEA  230 (345)
T ss_pred             cchHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 559999999999999999999999888899999999


Q ss_pred             HHHHHhcCcceeeecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccC
Q 018265          248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSL  327 (358)
Q Consensus       248 l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~  327 (358)
                      |+.+++..|.|+.++|.|+||+.+|+|+|.+++..+++++.+++..++.|+|+.+..-+-.||+.|+++|++|++++..+
T Consensus       231 Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l  310 (345)
T KOG1494|consen  231 LTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGL  310 (345)
T ss_pred             HHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCC
Confidence            99999999999999999999999999999999999999999887778899999887546779999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018265          328 GPLNEYERAGLEKAKKELAGSIQKGVSFVR  357 (358)
Q Consensus       328 ~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  357 (358)
                      ++|+++|++.|+.+..+|++.|+++++|+.
T Consensus       311 ~~lsd~E~~~l~~~~~eLk~sI~KGv~F~~  340 (345)
T KOG1494|consen  311 GKLSDYEEKALEAAKPELKKSIEKGVTFVK  340 (345)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            999999999999999999999999999975

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.7e-61  Score=460.89  Aligned_cols=281  Identities=25%  Similarity=0.444  Sum_probs=253.6

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        51 IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||+ |+||+++++.|+..++++||+|+|+++  ++|+++||+|+...  ..++..  ..|+ ++++|||+||+++|.||
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~~-~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGDY-SDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCCH-HHHCCCCEEEECCCCCC
Confidence            6898 999999999999999999999999987  79999999998642  234443  3464 88999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHHH
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAE  205 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~lA~  205 (358)
                      ++||+|.|++.+|++++++++++|++++|++++|++|||+|++|+++    ++.+++|++||||+ |.||++|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998764    67789999999999 89999999999999


Q ss_pred             HhCCCCCCCceEEEEecCCCcccccccccCCCC-C---C-------ChhHHHHHHHHHhcCcceeeecccCCCcccccHH
Q 018265          206 VLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S---L-------TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA  274 (358)
Q Consensus       206 ~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---~-------~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A  274 (358)
                      ++|+++++|+++|||+||+ +++|+||++++.+ +   +       .+.++++|.++++++|++|++.   ||+|+|++|
T Consensus       153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kG~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINR---KGATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhc---CCeeeHHHH
Confidence            9999999999999999998 9999999998743 1   2       1234679999999999999994   589999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHH
Q 018265          275 YAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG  347 (358)
Q Consensus       275 ~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  347 (358)
                      .++++++++|++|++   .++||+ +++|+| .+++|||+||+||++|+++++++ +|+++|+++|++|++.||+
T Consensus       229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~  299 (299)
T TIGR01771       229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK  299 (299)
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence            999999999999864   599997 789998 57899999999999999999995 9999999999999999973

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=7.2e-61  Score=473.25  Aligned_cols=300  Identities=22%  Similarity=0.258  Sum_probs=264.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhh
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~-------~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al  112 (358)
                      .++.||+||||+|+||+++++.|+.+       ++..||+|+|+++  ++|++|||+|+.+  ...+...  +.| ++++
T Consensus        98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~~  174 (444)
T PLN00112         98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEVF  174 (444)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence            45689999999899999999999998       6777999999988  8999999999863  1234332  345 5889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHh-hCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      +|||+||+++|.|+++||+|.|++..|++|+++++++|++ ++|++++|++|||+|++|+++    ++.++++++|+||+
T Consensus       175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViGt  250 (444)
T PLN00112        175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFHA  250 (444)
T ss_pred             CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEEe
Confidence            9999999999999999999999999999999999999999 589999999999999998765    67889999999999


Q ss_pred             -eeccHHHHHHHHHHHhCCCCCCC-ceEEEEecCCCcccccccccCCCC-C----CChhH--HHHHHHHHhcCcceeeec
Q 018265          192 -TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEA  262 (358)
Q Consensus       192 -t~lds~R~~~~lA~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~ii~~  262 (358)
                       |.||++||+++||+++|+++++| +++||||||+ ++||+||++++++ +    +++.+  +++|.++++++|++|++.
T Consensus       251 gT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~  329 (444)
T PLN00112        251 LTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKK  329 (444)
T ss_pred             eccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhc
Confidence             89999999999999999999999 6699999999 9999999999853 1    33333  578999999999999984


Q ss_pred             ccCCCcccc-cHHHHHHHHHHHHHccCCCCCcEEEee-EEeC-CC--CCccEEEEEEEEcCCceEEEc-cCCCCCHHHHH
Q 018265          263 KTGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVAS-TV--TELPFFASKVRLGRAGIEEIY-SLGPLNEYERA  336 (358)
Q Consensus       263 ~~gkg~t~~-s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~-~~~~L~~~E~~  336 (358)
                         ||++.| ++|.++++++++|+++.+ ++.++|++ +++| +|  ++|++||+||++|++|+++++ ++ +|+++|++
T Consensus       330 ---kG~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~~  404 (444)
T PLN00112        330 ---WGRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLRE  404 (444)
T ss_pred             ---cCchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHHH
Confidence               566766 999999999999995444 33599998 6799 48  589999999999999999999 65 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 018265          337 GLEKAKKELAGSIQKGVSFV  356 (358)
Q Consensus       337 ~l~~s~~~l~~~~~~~~~~~  356 (358)
                      +|++|+++|+++.+.+.+.+
T Consensus       405 ~l~~Sa~~L~~e~~~~~~~~  424 (444)
T PLN00112        405 RIKKSEAELLAEKRCVAHLT  424 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887654

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=8.9e-61  Score=459.98  Aligned_cols=294  Identities=28%  Similarity=0.388  Sum_probs=259.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGM  115 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~a  115 (358)
                      .||+||||+|+||+++++.|+..++++     +|+|+|+++    ++|+++||.|+.+  .......  +.+ +++++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-~~~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-EEAFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-HHHhCCC
Confidence            489999999999999999999988887     599999975    6899999999852  1223322  234 6899999


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCC-CCCCcEEEeee
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT-YDPKRLLGVTM  193 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~-~p~~kviG~t~  193 (358)
                      |+||++||.|+++|++|.|++..|++++++++++|+++| |++++|++|||+|++|+++    ++.+| +|++||||+|.
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~  153 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTR  153 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeH
Confidence            999999999999999999999999999999999999996 9999999999999998765    67888 59999999999


Q ss_pred             ccHHHHHHHHHHHhCCCCCCC-ceEEEEecCCCcccccccccCCCCC----C----ChhH--HHHHHHHHhcCcceeeec
Q 018265          194 LDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSCS----L----TPTE--IDYLTDRIQNGGTEVVEA  262 (358)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~~----~----~~~~--~~~l~~~v~~~~~~ii~~  262 (358)
                      ||++||++++|+++++++++| +++||||||+ +++|+||++++...    +    .+++  .++|.+++++++++|++.
T Consensus       154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~  232 (323)
T cd00704         154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK  232 (323)
T ss_pred             HHHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc
Confidence            999999999999999999999 5689999999 99999999987431    1    2223  578999999999999994


Q ss_pred             ccCCCccccc-HHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHH
Q 018265          263 KTGAGSATLS-MAYAAAKFADACLRGLRGDAGVIECA-YVASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAG  337 (358)
Q Consensus       263 ~~gkg~t~~s-~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~  337 (358)
                         ||+++|+ +|.++++++++|++|++++ .++||+ +++|+|   |++++||+||++|++|+++++++ +|+++|+++
T Consensus       233 ---kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~  307 (323)
T cd00704         233 ---RGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREK  307 (323)
T ss_pred             ---cCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHH
Confidence               5788896 6999999999999998643 499997 789987   47999999999999999999995 999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 018265          338 LEKAKKELAGSIQKGV  353 (358)
Q Consensus       338 l~~s~~~l~~~~~~~~  353 (358)
                      |++|++.|+++.+.++
T Consensus       308 l~~s~~~l~~~~~~~~  323 (323)
T cd00704         308 LKATEEELIEEKEIAL  323 (323)
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999998764

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=1.3e-60  Score=465.05  Aligned_cols=300  Identities=22%  Similarity=0.268  Sum_probs=261.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--eCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhh
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~-----el~L~--D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al  112 (358)
                      .++.||+||||+|+||+++++.|+..++++     +|+|+  |+++  ++|+++||+|+.+  ...+...  +.| ++++
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~~~  118 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YEVF  118 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence            346899999998999999999999999987     67777  5555  7999999999862  1233332  345 5889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      +|||+||+++|.||++|++|.|++..|+++++++++.|++++ |++++|++|||+|++|+++    ++.+++|++|+||+
T Consensus       119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rviG~  194 (387)
T TIGR01757       119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNFHA  194 (387)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEEEe
Confidence            999999999999999999999999999999999999999987 9999999999999998765    67889999999999


Q ss_pred             -eeccHHHHHHHHHHHhCCCCCCC-ceEEEEecCCCcccccccccCCCC-C----CChhH--HHHHHHHHhcCcceeeec
Q 018265          192 -TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEA  262 (358)
Q Consensus       192 -t~lds~R~~~~lA~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~ii~~  262 (358)
                       |.||++||+++||+++++++++| +++||||||+ +++|+||++++.+ +    +++.+  +++|.++++++|++|++.
T Consensus       195 gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~  273 (387)
T TIGR01757       195 LTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKK  273 (387)
T ss_pred             cchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhc
Confidence             99999999999999999999999 5999999998 9999999998853 1    22223  679999999999999984


Q ss_pred             ccCCCcccc-cHHHHHHHHHHHHHccCCCCCcEEEee-EEeCC-C--CCccEEEEEEEEcCCceEEEc-cCCCCCHHHHH
Q 018265          263 KTGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVAST-V--TELPFFASKVRLGRAGIEEIY-SLGPLNEYERA  336 (358)
Q Consensus       263 ~~gkg~t~~-s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~-~--~~~~~~svPv~ig~~Gv~~i~-~~~~L~~~E~~  336 (358)
                         ||++.| |+|.++++++++|+++.+. +.++|++ +++|+ |  +++++||+||++|++|+++++ ++ +|+++|++
T Consensus       274 ---KG~t~~~s~a~ai~~~i~ai~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~  348 (387)
T TIGR01757       274 ---WGRSSAASTAVSIADAIKSLVVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRE  348 (387)
T ss_pred             ---cCchhHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHH
Confidence               466666 9999999999999955442 3599997 56996 8  489999999999999999997 74 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 018265          337 GLEKAKKELAGSIQKGVSFV  356 (358)
Q Consensus       337 ~l~~s~~~l~~~~~~~~~~~  356 (358)
                      +|++|++.|+++.+.+++.+
T Consensus       349 ~l~~Sa~~L~~e~~~~~~~~  368 (387)
T TIGR01757       349 RIRKSEDELLKEKECVAHLI  368 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999887754

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=4.9e-60  Score=454.63  Aligned_cols=296  Identities=23%  Similarity=0.308  Sum_probs=262.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~  113 (358)
                      |++||+||||+|+||+++++.|+..++++     ||+|+|+++    ++|+++||+|+.+  ...++..  +.| +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            46799999988999999999999999999     999999954    6899999999863  1234432  345 58899


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~-~~p~~kviG~  191 (358)
                      |||+||++||.|+++|++|.+++..|++++++++++|++++ |++++|++|||+|++|+++    ++.+ ++|++||||+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~  153 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM  153 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence            99999999999999999999999999999999999999999 5999999999999998775    6777 5999999999


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCce-EEEEecCCCcccccccccCCCC-C----CChhH--HHHHHHHHhcCcceeeecc
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEAK  263 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~ii~~~  263 (358)
                      |.||++||++.+|+++|+++++|++ +|||+||+ +++|+||++++.. +    +.+.+  +++|.+++++++++|++. 
T Consensus       154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-  231 (322)
T cd01338         154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA-  231 (322)
T ss_pred             hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhC-
Confidence            9999999999999999999999997 56999998 9999999998742 1    34433  579999999999999994 


Q ss_pred             cCCCcccccHH-HHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          264 TGAGSATLSMA-YAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       264 ~gkg~t~~s~A-~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                        ||+++|+++ .++++++++|++|++. +.++|++ +++|+|  |++++||+||++|++|+++++++ +|+++|+++|+
T Consensus       232 --kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~  307 (322)
T cd01338         232 --RGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKID  307 (322)
T ss_pred             --cCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHH
Confidence              589999999 5999999999999852 2588997 569998  58999999999999999999995 99999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 018265          340 KAKKELAGSIQKGV  353 (358)
Q Consensus       340 ~s~~~l~~~~~~~~  353 (358)
                      +|++.|+++.+++.
T Consensus       308 ~s~~~l~~~~~~~~  321 (322)
T cd01338         308 ATLAELLEEREAVK  321 (322)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-59  Score=449.84  Aligned_cols=297  Identities=31%  Similarity=0.511  Sum_probs=265.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      +.+||+|||| |+||+++++.++..++ .+|+|+|+++  +.|+++|+.|....  ...+.. .++|++ +++|||+||+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~~-~l~~ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNYE-DIKDSDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCHH-HhCCCCEEEE
Confidence            5679999998 9999999999999887 5899999987  67899999997532  123332 346874 8999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-eccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t-~lds~R~  199 (358)
                      ++|.++++|++|.|++..|.+++++++++|+++||++|+|++|||+|++++++    ++++++|++||+|+| .||++|+
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R~  155 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSRF  155 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHHH
Confidence            99999999999999999999999999999999999999999999999998654    678899999999995 8999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeecccCCCcc
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t  269 (358)
                      ++.+|+++|+++++|+++|+||||+ +++|+||++++.+          .+.+++++++.++++++|++|++.+ |||++
T Consensus       156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t  233 (319)
T PTZ00117        156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA  233 (319)
T ss_pred             HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence            9999999999999999999999998 8999999998742          1455568899999999999999976 68999


Q ss_pred             cccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHH
Q 018265          270 TLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG  347 (358)
Q Consensus       270 ~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  347 (358)
                      +||+|.++++++++|++|.+   .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       234 ~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~  309 (319)
T PTZ00117        234 FFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQE  309 (319)
T ss_pred             HHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999864   599997 679998 46999999999999999999995 9999999999999999999


Q ss_pred             HHHHhhhh
Q 018265          348 SIQKGVSF  355 (358)
Q Consensus       348 ~~~~~~~~  355 (358)
                      .+++...+
T Consensus       310 ~~~~~~~~  317 (319)
T PTZ00117        310 LTQKAKAL  317 (319)
T ss_pred             HHHHHHHh
Confidence            98866543

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=2.1e-59  Score=449.05  Aligned_cols=288  Identities=27%  Similarity=0.422  Sum_probs=258.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +||+|||+ |.+|+++++.|+..++..+|+|+|++.  ++++++||.|+..  .......  +.++ +++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~-~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDY-SDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCH-HHhCCCCEEEEcc
Confidence            38999998 999999999999999888999999987  6889999998753  1223332  2455 6799999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~  201 (358)
                      |.|+++||+|.+++.+|++++++++++|++++|++++|++|||+|++|+++    ++++++|++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998664    67799999999999 7999999999


Q ss_pred             HHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeecccCCCcccc
Q 018265          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL  271 (358)
Q Consensus       202 ~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~  271 (358)
                      ++|+++|+++++|+++|||+||+ +++|+||++++.+          .+.+++++++.++++++|++|++.   ||+++|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING---KGATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc---cCccHH
Confidence            99999999999999999999998 8999999998742          133456889999999999999994   589999


Q ss_pred             cHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          272 SMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       272 s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      ++|.++++++++|++|.+   .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus       229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~  304 (306)
T cd05291         229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENI  304 (306)
T ss_pred             HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999854   588997 679999 77999999999999999999995 999999999999999999876


Q ss_pred             H
Q 018265          350 Q  350 (358)
Q Consensus       350 ~  350 (358)
                      +
T Consensus       305 ~  305 (306)
T cd05291         305 K  305 (306)
T ss_pred             h
Confidence            4

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=2.9e-59  Score=446.54  Aligned_cols=286  Identities=29%  Similarity=0.444  Sum_probs=257.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      |+|||+ |.||+++++.++..+++.||+|+|+++  +.|+++||.|.... ...+... ++|+ ++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-ADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-HHhCCCCEEEEcCCCC
Confidence            689998 999999999999999999999999987  78999999998643 2233332 3565 7899999999999999


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHH
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVA  204 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~lA  204 (358)
                      +++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++    ++++|+|++||||+ |.||+.|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998754    78889999999999 7999999999999


Q ss_pred             HHhCCCCCCCceEEEEecCCCcccccccccCCCC-C----C--ChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHH
Q 018265          205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAA  277 (358)
Q Consensus       205 ~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~--~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai  277 (358)
                      +++++++++|+++|+|+||+ +++|+||++++.+ +    +  +++.+++|.+++++++++|++.   ||+++||+|.++
T Consensus       154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~---kg~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRL---KGATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHc---cCcchHHHHHHH
Confidence            99999999999999999998 8999999998753 1    1  2345789999999999999984   589999999999


Q ss_pred             HHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          278 AKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       278 ~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      ++++++|++|.+   .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~  299 (300)
T cd00300         230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL  299 (300)
T ss_pred             HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999864   589998 568999 78999999999999999999995 999999999999999999765

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1e-58  Score=445.86  Aligned_cols=292  Identities=32%  Similarity=0.580  Sum_probs=261.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      +.+||+|||| |+||+++++.++..++ .+|+|+|+++  +.+.++|+.|...  ....+.. .++|+ ++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~   80 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV   80 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence            4579999998 9999999999999887 4699999988  6788999998742  1223332 35687 78999999999


Q ss_pred             cCCCCCCCCC-----CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ec
Q 018265          121 PAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-ML  194 (358)
Q Consensus       121 ~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t-~l  194 (358)
                      ++|.++++|+     +|.+++..|++++++++++|+++||++|+|++|||+|++++++    ++++++|++||+|+| .|
T Consensus        81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l  156 (321)
T PTZ00082         81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL  156 (321)
T ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence            9999999999     9999999999999999999999999999999999999998654    688899999999995 99


Q ss_pred             cHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeeccc
Q 018265          195 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKT  264 (358)
Q Consensus       195 ds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~  264 (358)
                      |+.|+++.+|+++|+++++|+++|+||||+ ++||+||++++.+          .++++++++|.++++++|++|++.+ 
T Consensus       157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-  234 (321)
T PTZ00082        157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-  234 (321)
T ss_pred             cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence            999999999999999999999999999998 9999999998742          1455668899999999999999976 


Q ss_pred             CCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 018265          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK  342 (358)
Q Consensus       265 gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~  342 (358)
                      |||+|+||+|.++++++++|++|++   .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|+
T Consensus       235 gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa  310 (321)
T PTZ00082        235 GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESI  310 (321)
T ss_pred             CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHH
Confidence            6899999999999999999999865   599998 679998 57999999999999999999995 99999999999999


Q ss_pred             HHHHHHHH
Q 018265          343 KELAGSIQ  350 (358)
Q Consensus       343 ~~l~~~~~  350 (358)
                      +.|++.++
T Consensus       311 ~~i~~~~~  318 (321)
T PTZ00082        311 KEVKRLEA  318 (321)
T ss_pred             HHHHHHHh
Confidence            99998764

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.5e-58  Score=442.11  Aligned_cols=288  Identities=32%  Similarity=0.527  Sum_probs=259.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC----CeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN----AVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~----~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      |||+|||+ |.||+.+|+.++..++. +++|+|+++  ..|.++|+.+....    .+++   .++|++ ++++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~-~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYA-DTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHH-HhCCCCEEEE
Confidence            69999998 99999999999998877 899999977  56788888775421    2233   356875 5899999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      ++|.|+++|++|.|++..|++++++++++|.+++|++++|++|||+|++|+++    ++++|+|++||||+ |.|||+|+
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    78889999999999 58999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C----CChhHHHHHHHHHhcCcceeeecccCCCcccccHH
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA  274 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A  274 (358)
                      ++.+|+++++++++|+++||||||+ +++|+||++++.+ +    ++++++++|.++++++|++|++.+ |||+++||+|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a  229 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA  229 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence            9999999999999999999999999 8999999998853 2    344458899999999999999976 6889999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018265          275 YAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQ  350 (358)
Q Consensus       275 ~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  350 (358)
                      .++++++++|++|++   .++|++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|++.++
T Consensus       230 ~~~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~  303 (305)
T TIGR01763       230 ASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCK  303 (305)
T ss_pred             HHHHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999865   489997 679998 68999999999999999999995 9999999999999999998775

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.1e-57  Score=438.71  Aligned_cols=296  Identities=24%  Similarity=0.327  Sum_probs=255.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      ||+||||+|+||+++++.|+..++++     +|+|+|+++    ++|+++||.|+.... ...+..+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~-~~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPL-LDGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchh-cCceeccCChHHHhCCCCEE
Confidence            69999999999999999999988875     799999954    679999999987311 11122233546899999999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccH
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDV  196 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds  196 (358)
                      |++||.|+++|++|.+++..|++++++++++|++++ |++++|++|||+|+||+++    ++++++++.++||+ |.||+
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 9999999999999998765    67787777789999 89999


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eEEEEecCCCcccccccccCCC-C----C----CChhH--HHHHHHHHhcCcceeeeccc
Q 018265          197 VRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS-C----S----LTPTE--IDYLTDRIQNGGTEVVEAKT  264 (358)
Q Consensus       197 ~R~~~~lA~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~-~----~----~~~~~--~~~l~~~v~~~~~~ii~~~~  264 (358)
                      +||++++|+++|+++++|+ ++||||||+ +++|+||++++. +    +    +++++  +++|.+++++++++|++.+ 
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR-  233 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence            9999999999999999995 699999999 999999999886 3    2    22222  5789999999999999964 


Q ss_pred             CCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCC-C--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHH
Q 018265          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVAST-V--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK  340 (358)
Q Consensus       265 gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~-~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~  340 (358)
                       ++++.||+|.++++++++|+++.+ ++.++|++ +++|+ |  +++++||+||++|++|++.+.++ +|+++|+++|++
T Consensus       234 -~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~  310 (324)
T TIGR01758       234 -KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLAL  310 (324)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHH
Confidence             358999999999999999995433 23599998 56999 8  48999999999997777776665 999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 018265          341 AKKELAGSIQKGV  353 (358)
Q Consensus       341 s~~~l~~~~~~~~  353 (358)
                      |++.|+++++.++
T Consensus       311 s~~~lk~~~~~~~  323 (324)
T TIGR01758       311 TAKELEEERDEAL  323 (324)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998874

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.8e-57  Score=435.67  Aligned_cols=288  Identities=28%  Similarity=0.452  Sum_probs=260.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||+|||+ |.||+++++.|+..++..+++|+|++.  ..++++|+.|... .......  ++|+ +++++||+||++++
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence            69999998 999999999999999888999999987  6789999998853 1223333  3565 77999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~  202 (358)
                      .++++|++|.+++..|+++++++++.|++++|+++++++|||+|++++++    ++++|||++||||+ |.||+.|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765    67789999999999 89999999999


Q ss_pred             HHHHhCCCCCCCceEEEEecCCCcccccccccCCCC------------CCChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       203 lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      +|+++++++++|+++|||+||+ +++|+||++++.+            .++++++++|.++++++|++|++.   ||+|+
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---kg~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIER---KGATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHc---CCccH
Confidence            9999999999999999999998 8999999998742            233455889999999999999994   57999


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS  348 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~  348 (358)
                      ||+|.++++++++|++|.+   .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.
T Consensus       229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~  304 (308)
T cd05292         229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEA  304 (308)
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999864   589997 679998 57999999999999999999995 99999999999999999988


Q ss_pred             HH
Q 018265          349 IQ  350 (358)
Q Consensus       349 ~~  350 (358)
                      ++
T Consensus       305 ~~  306 (308)
T cd05292         305 IE  306 (308)
T ss_pred             Hh
Confidence            76

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=1e-57  Score=439.58  Aligned_cols=296  Identities=24%  Similarity=0.335  Sum_probs=259.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~  113 (358)
                      +|.||+||||+|+||+++++.|+..++++     +|+|+|+++    +.++++|+.|+..  ..+++.   +++++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            46799999999999999999999988764     999999954    5788999999752  123332   357779999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHh-CCCCCCcEEEe
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV-GTYDPKRLLGV  191 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~-~~~p~~kviG~  191 (358)
                      |||+||++||.++++|++|.+++..|+++++++++.|++++ |++++|++|||+|++|+++    ++. +++|+++ ||+
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~  152 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA  152 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence            99999999999999999999999999999999999999997 7999999999999998765    566 5788877 888


Q ss_pred             -eeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCCCcccccccccCCC----C-C----CChhH--HHHHHHHHhcCcce
Q 018265          192 -TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS----C-S----LTPTE--IDYLTDRIQNGGTE  258 (358)
Q Consensus       192 -t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~----~-~----~~~~~--~~~l~~~v~~~~~~  258 (358)
                       |.||+.||++++|+++++++++|+ .+||||||+ +++|+||++++.    . +    +++++  +++|.+++++++++
T Consensus       153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~  231 (325)
T cd01336         153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA  231 (325)
T ss_pred             eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence             999999999999999999999996 569999999 999999999885    3 1    22222  57999999999999


Q ss_pred             eeecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHH
Q 018265          259 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYER  335 (358)
Q Consensus       259 ii~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~  335 (358)
                      |++.+  +|+++||+|.++++++++|++|++. +.++|++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+
T Consensus       232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~~-~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~  307 (325)
T cd01336         232 VIKAR--KLSSAMSAAKAICDHVHDWWFGTPE-GEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSR  307 (325)
T ss_pred             HHHcc--ccchHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHH
Confidence            99964  5799999999999999999998632 3599997 579998  48999999999999999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 018265          336 AGLEKAKKELAGSIQKGV  353 (358)
Q Consensus       336 ~~l~~s~~~l~~~~~~~~  353 (358)
                      ++|++|++.|+++++.++
T Consensus       308 ~~l~~s~~~l~~e~~~~~  325 (325)
T cd01336         308 EKIDATAKELVEEKETAL  325 (325)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999998764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=1.8e-56  Score=441.69  Aligned_cols=293  Identities=16%  Similarity=0.144  Sum_probs=254.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC--C--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDTN--AVVRGFLGQQQLEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~--~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~  113 (358)
                      ++.||+|+||+|++|+++.+.++..+++     -.|+|+|+.  .  ++|++|||+|+.+.  ..+...  +.+ +++++
T Consensus       122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ea~~  198 (452)
T cd05295         122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-DVAFK  198 (452)
T ss_pred             CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-HHHhC
Confidence            3579999999999999999999986543     379999994  3  79999999998631  224443  234 69999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC--CeEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEE
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLG  190 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~tNP~d~~t~~~~~~~~~~~-~~p~~kviG  190 (358)
                      |||+||+++|.||++||+|.|++..|++|+++++++|++++|  ++++|++|||+|++|+++    ++.+ ++|++||+|
T Consensus       199 daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rVig  274 (452)
T cd05295         199 DAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNIIA  274 (452)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEE
Confidence            999999999999999999999999999999999999999999  889999999999999775    4555 999999999


Q ss_pred             eeeccHHHHHHHHHHHhCCCCCCC-ceEEEEecCCCcccccccccCCCC-------------C----CChhH--HHHHHH
Q 018265          191 VTMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC-------------S----LTPTE--IDYLTD  250 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-------------~----~~~~~--~~~l~~  250 (358)
                      ++.+|++|++++||+++|+++++| +++||||||+ ++||+||++++..             +    +.+++  .+++.+
T Consensus       275 ~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~  353 (452)
T cd05295         275 VARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVA  353 (452)
T ss_pred             ecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHH
Confidence            977889999999999999999999 6799999999 9999999998842             1    22333  257788


Q ss_pred             HHhcCcceeeecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccC
Q 018265          251 RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSL  327 (358)
Q Consensus       251 ~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~  327 (358)
                      .++++++   +   +||+|.||+|.|+++++++|++|++. +.++|++ +++|+|  |+|++||+||++|++|++.+.++
T Consensus       354 ~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~-~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L  426 (452)
T cd05295         354 TLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPP-GEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL  426 (452)
T ss_pred             HHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC
Confidence            8888887   2   46899999999999999999999852 2599997 679998  68999999999999999999995


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhh
Q 018265          328 GPLNEYERAGLEKAKKELAGSIQKGV  353 (358)
Q Consensus       328 ~~L~~~E~~~l~~s~~~l~~~~~~~~  353 (358)
                       +|+++|+++|++|+++|++|.+.++
T Consensus       427 -~L~e~E~~kL~~S~~eL~~E~~~~~  451 (452)
T cd05295         427 -ELSEILREVLKRITSDLIQEKLVAL  451 (452)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence             9999999999999999999987663

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=1.3e-55  Score=420.62  Aligned_cols=272  Identities=22%  Similarity=0.340  Sum_probs=240.8

Q ss_pred             EEEEEeCCC----chhHHHHHhcCCC-C-CeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHH
Q 018265           74 VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC  147 (358)
Q Consensus        74 el~L~D~~~----~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~  147 (358)
                      .|+|+|+++    ++|+++||.|+.. . ..++.   ++|.+++++|||+||++||.|+++|++|.+++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999876    6899999999863 1 23322   3454588999999999999999999999999999999999999


Q ss_pred             HHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHHHHhCCCCCCC-ceEEEEecCC
Q 018265          148 EGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAG  224 (358)
Q Consensus       148 ~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~lA~~l~v~~~~v-~~~v~G~hg~  224 (358)
                      ++|+++ +|++++|++|||+|+||+++    ++.+++|++|+||+ |.||++||++++|+++|+++++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999998765    67889999999999 89999999999999999999999 7999999999


Q ss_pred             CcccccccccCC----CC-C----CChhH--HHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHHHHHccCCCCCc
Q 018265          225 VTILPLLSQVKP----SC-S----LTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAG  293 (358)
Q Consensus       225 ~~~vp~~s~~~v----~~-~----~~~~~--~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~  293 (358)
                       +++|+||++++    ++ +    +.+++  .++|.++++++|++|++.+  ||+|+||+|.++++++++|+++++ ++.
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~~-~~~  243 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTP-EGT  243 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence             99999999988    42 1    23333  5789999999999999963  579999999999999999999642 235


Q ss_pred             EEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018265          294 VIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR  357 (358)
Q Consensus       294 v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  357 (358)
                      ++|++ +++|+|  +++++||+||++|++|++.+.++ +|+++|+++|++|++.|+++++++++.|+
T Consensus       244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~~~~~~  309 (309)
T PLN00135        244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELAYSCLS  309 (309)
T ss_pred             EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99997 579998  48999999999999999999896 99999999999999999999999988763

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=3.1e-55  Score=420.21  Aligned_cols=291  Identities=26%  Similarity=0.439  Sum_probs=257.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      |||+|+||+|.+|++++..++..++..+|+|+|+++    +++.++|+.|...  ....+.. .++|+ +++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d~-~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSDL-SDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCCH-HHhCCCCEEEE
Confidence            699999988999999999999999988999999954    6788999998632  1222332 24565 67999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      ++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++    ++.+++|++|+||+ |.||++|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    67889999999999 79999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C------CChhHHHHHHHHHhcCcceeeecccCCCccccc
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS  272 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s  272 (358)
                      +++||+++++++++|+++|+||||+ +++|+||++++.+ +      +.+.+++++.++++++|++|++.   ||++.||
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCchhh
Confidence            9999999999999999999999999 8999999998853 1      22445789999999999999995   4678899


Q ss_pred             HHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          273 MAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       273 ~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      +|.++++++++|++|++   .++|++ +++|+|  .+++++|+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       231 ~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~  306 (309)
T cd05294         231 PASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYT  306 (309)
T ss_pred             HHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999875   488887 568886  34899999999999999999995 999999999999999999876


Q ss_pred             HH
Q 018265          350 QK  351 (358)
Q Consensus       350 ~~  351 (358)
                      +.
T Consensus       307 ~~  308 (309)
T cd05294         307 RE  308 (309)
T ss_pred             hc
Confidence            53

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=2.7e-55  Score=419.56  Aligned_cols=287  Identities=34%  Similarity=0.592  Sum_probs=256.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      |+|||| |.||+.++..++..++. +|+|+|+++  +.+.++|+.+...  ....+.. .++|+ ++++|||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence            689999 99999999999998887 999999988  5778888887642  1222332 34675 679999999999999


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-eccHHHHHHHH
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFV  203 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t-~lds~R~~~~l  203 (358)
                      |+++|++|.+++.+|++++++++++|++++|++++|++|||+|++|+++    ++++++|++||+|+| .||++|++.++
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998765    678899999999995 89999999999


Q ss_pred             HHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C----CChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHH
Q 018265          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA  278 (358)
Q Consensus       204 A~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~  278 (358)
                      |+++++++++|+++|+|+||+ +++|+||++++.. +    +++++++++.+++++++++|++.| |||+++||+|.+++
T Consensus       153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~  230 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA  230 (300)
T ss_pred             HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence            999999999999999999998 8999999998853 2    344568899999999999999977 67999999999999


Q ss_pred             HHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          279 KFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       279 ~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      +++++|++|++   .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       231 ~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~  299 (300)
T cd01339         231 EMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI  299 (300)
T ss_pred             HHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence            99999999864   599998 679998 56999999999999999999995 999999999999999999765

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=5.1e-55  Score=418.95  Aligned_cols=292  Identities=33%  Similarity=0.585  Sum_probs=260.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ++||+|||| |+||++++..++..++. +|+|+|+++  +++.++|+.+....  ...+.. .++|+ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence            479999999 99999999999998877 999999987  67888898876421  122322 34676 679999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~  200 (358)
                      +|.|+++|++|.+++.+|++++++++++|++++|++|+|++|||+|++|+++    ++++++|++||||+ |.||++||+
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999998765    67889999999999 599999999


Q ss_pred             HHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C----CChhHHHHHHHHHhcCcceeeecccCCCcccccHHH
Q 018265          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY  275 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~  275 (358)
                      +.||+++++++++|+++|+|+||+ +++|+||.+++.. +    ++++.+++|.++++++++++++.+ +|+++.|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~  231 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA  231 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence            999999999999999999999998 9999999998742 2    444557899999999999999974 56899999999


Q ss_pred             HHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018265          276 AAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK  351 (358)
Q Consensus       276 ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~  351 (358)
                      ++++++++|+.|++   .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus       232 ~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  305 (307)
T PRK06223        232 SIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA  305 (307)
T ss_pred             HHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999864   488887 678888 57999999999999999999995 99999999999999999988864

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=1.2e-54  Score=414.89  Aligned_cols=273  Identities=21%  Similarity=0.264  Sum_probs=236.7

Q ss_pred             EEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHH
Q 018265           74 VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG  149 (358)
Q Consensus        74 el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~  149 (358)
                      .|+|+|+++    ++|+++||.|+. .+..+....++|++++++|||+||++||.|+++|++|.+++..|++++++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~   95 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEA   95 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhc-cccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            899999976    689999999997 232211112467778999999999999999999999999999999999999999


Q ss_pred             HHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHHHHhCCCCCCCce-EEEEecCCCc
Q 018265          150 IAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVT  226 (358)
Q Consensus       150 i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~lA~~l~v~~~~v~~-~v~G~hg~~~  226 (358)
                      |++++| ++++|++|||+|++|++++   ++.+|+|++ +||+ |.||++||++++|+++++++++|+. +||||||+ +
T Consensus        96 i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~-s  170 (313)
T TIGR01756        96 LSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE-S  170 (313)
T ss_pred             HHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-c
Confidence            999995 5889999999999987652   588999998 9999 8999999999999999999999965 59999999 9


Q ss_pred             ccccccccCC--CC-C------CChh-HHHHHHHHHhcCcceeeecccCCCcccccHH-HHHHHHHHHHHccCCCCCcEE
Q 018265          227 ILPLLSQVKP--SC-S------LTPT-EIDYLTDRIQNGGTEVVEAKTGAGSATLSMA-YAAAKFADACLRGLRGDAGVI  295 (358)
Q Consensus       227 ~vp~~s~~~v--~~-~------~~~~-~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A-~ai~~ii~ai~~~~~~~~~v~  295 (358)
                      ++|+||++++  .+ +      ++++ .++++.++++++|++|++.   ||+|+|+++ .++++++++|++|++. +.++
T Consensus       171 ~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t~~~~~a~ai~~iv~ail~~~~~-~~i~  246 (313)
T TIGR01756       171 MVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEM---RGFTSAASPVKASLQHMKAWLFGTRP-GEVL  246 (313)
T ss_pred             eeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhC---cCCcchHHHHHHHHHHHHHHhcCCCC-CeEE
Confidence            9999999988  43 1      2221 3578999999999999994   579999977 6999999999997653 3599


Q ss_pred             Eee-EEe-C-CC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018265          296 ECA-YVA-S-TV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV  356 (358)
Q Consensus       296 ~~s-~~~-g-~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~  356 (358)
                      |++ +++ + +|  ++|+++|+||++|++|++++++.++|+++|+++|++|++.|++|.+.+++.|
T Consensus       247 pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~~~~~~  312 (313)
T TIGR01756       247 SMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERETALKAL  312 (313)
T ss_pred             EEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            998 465 3 88  3799999999999999999999339999999999999999999999988764

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=9.7e-51  Score=381.28  Aligned_cols=254  Identities=29%  Similarity=0.452  Sum_probs=229.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |+||||+|.+|+++++.|+..+  ...+|+|+|+++  +++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence            6899998999999999999988  778999999987  788999999885432 23333 36788899999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~l  203 (358)
                      .++++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++    ++++|+|++|+||+|.+|+.|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764    77889999999999559999999999


Q ss_pred             HHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHHH
Q 018265          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA  283 (358)
Q Consensus       204 A~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~a  283 (358)
                      |+++++++++|+++|||+||+ +++|+||+++                                     +|.++++++++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a  197 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS  197 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence            999999999999999999998 8999999864                                     67899999999


Q ss_pred             HHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          284 CLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       284 i~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      |++|++   .++|++ +++|+|  +++++||+||++|++|+++++++ +|+++|+++|+++++.++..+
T Consensus       198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~  262 (263)
T cd00650         198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL  262 (263)
T ss_pred             HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999854   588887 568988  58999999999999999999995 999999999999999998765

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=4.3e-50  Score=357.62  Aligned_cols=305  Identities=24%  Similarity=0.351  Sum_probs=274.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~-----~~~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      +++.+|.|+||+|++|+++.+.++...     ....++|+|+..    ++|..|+|+|+.. |.++.+..++|..++|+|
T Consensus         2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~-PlL~~Vvattd~~~afkd   80 (332)
T KOG1496|consen    2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCAL-PLLKGVVATTDEVEAFKD   80 (332)
T ss_pred             CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhh-hHHHhhhcccChhhhhcc
Confidence            356799999999999999999998642     235899999987    6899999999974 676666567899999999


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeee
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~  193 (358)
                      .|+.|+.+++||++||+|.|++..|.+|+++.++++++|+ |+++|+++.||+|.++.++.   +.++.+|.+++-++|.
T Consensus        81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTR  157 (332)
T KOG1496|consen   81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTR  157 (332)
T ss_pred             CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhh
Confidence            9999999999999999999999999999999999999998 89999999999999987764   5678999999999999


Q ss_pred             ccHHHHHHHHHHHhCCCCCCC-ceEEEEecCCCcccccccccCCCC---------CCChhHH--HHHHHHHhcCcceeee
Q 018265          194 LDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC---------SLTPTEI--DYLTDRIQNGGTEVVE  261 (358)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~---------~~~~~~~--~~l~~~v~~~~~~ii~  261 (358)
                      ||++|+..++|.++||+.++| ++.+||+|+. +++|+..++++..         -+.|..|  .+|.+.|++||.-+|+
T Consensus       158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~  236 (332)
T KOG1496|consen  158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIK  236 (332)
T ss_pred             hchhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhh
Confidence            999999999999999999999 7999999998 9999999998842         1456666  5899999999999999


Q ss_pred             cccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHH
Q 018265          262 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL  338 (358)
Q Consensus       262 ~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l  338 (358)
                      .+  |-|+.+|.|.+++++|+.|+.++++.. +++++ +.+|.|  |++..||+||++ ++|-|++++..+++++-++++
T Consensus       237 ar--k~SSA~SaA~aacDhi~dw~~gTpeG~-fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km  312 (332)
T KOG1496|consen  237 AR--KLSSAMSAAKAACDHIRDWWFGTPEGT-FVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKM  312 (332)
T ss_pred             hh--hhhhhhhHHHhHhhhhhheecCCCCcc-EEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhh
Confidence            76  568899999999999999999998654 66775 679998  899999999999 789999999889999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q 018265          339 EKAKKELAGSIQKGVSFVR  357 (358)
Q Consensus       339 ~~s~~~l~~~~~~~~~~~~  357 (358)
                      ..++++|+++.+.++.+++
T Consensus       313 ~~t~~EL~eEkd~a~~~l~  331 (332)
T KOG1496|consen  313 DLTAKELKEEKDLAYSCLS  331 (332)
T ss_pred             hhhHHHHHHhHHHHHHhhc
Confidence            9999999999999998775

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=2.3e-33  Score=247.87  Aligned_cols=159  Identities=36%  Similarity=0.582  Sum_probs=144.6

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCC-----------CCCChhHHHHHHHHHhcCcceee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPS-----------CSLTPTEIDYLTDRIQNGGTEVV  260 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~-----------~~~~~~~~~~l~~~v~~~~~~ii  260 (358)
                      |.||++||++++|+++|++|++++++||||||+ ++||+||++++.           ..++++++++|.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            679999999999999999999999999999999 999999999874           13566778999999999999999


Q ss_pred             ecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCc-cEEEEEEEEcCCceEEEccCCCCCHHHHH
Q 018265          261 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TEL-PFFASKVRLGRAGIEEIYSLGPLNEYERA  336 (358)
Q Consensus       261 ~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~-~~~svPv~ig~~Gv~~i~~~~~L~~~E~~  336 (358)
                      +.|.  |+++||+|.++++++++|++|++   .++|++ +++|+|  +++ +|||+||++|++|+++++++++|+++|++
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  154 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE  154 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred             eecc--ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence            9763  89999999999999999999974   588887 679998  334 99999999999999999994499999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 018265          337 GLEKAKKELAGSIQKGVSFV  356 (358)
Q Consensus       337 ~l~~s~~~l~~~~~~~~~~~  356 (358)
                      +|++|++.|+++++++++|+
T Consensus       155 ~l~~sa~~l~~~i~~~~~f~  174 (174)
T PF02866_consen  155 KLKESAKELKKEIEKGLEFV  174 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999986

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=9.2e-33  Score=235.78  Aligned_cols=139  Identities=39%  Similarity=0.620  Sum_probs=123.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      |||+||||+|.||+++++.|+++++.+||+|+|+++  ++|+++||+|+.............+ +++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence            799999999999999999999999999999999996  8999999999865332222222344 5889999999999999


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      |+++|++|.+++..|++++++++++|++++|+++++++|||+|++|++    +++.+++|++|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCcCcccCcC
Confidence            999999999999999999999999999999999999999999999765    47889999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.97  E-value=2.5e-30  Score=256.99  Aligned_cols=279  Identities=20%  Similarity=0.222  Sum_probs=190.1

Q ss_pred             CEEEEEcCCCchHHHHHHHH----HhC--CC-CcEEEEEeCCC-ch----hHHHHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLM----KIN--PL-VSVLHLYDVVN-TP----GVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l----~~~--~~-~~el~L~D~~~-~~----g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      |||+|||| |+   +.++.|    +..  .+ .+||+|+|+++ ..    ..+..+.+.. ...++.. .|+|+++|++|
T Consensus         1 ~KI~iIGg-GS---~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~-~ttD~~~Al~g   74 (425)
T cd05197           1 VKIAIIGG-GS---SFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFE-KTMDLEDAIID   74 (425)
T ss_pred             CEEEEECC-ch---HhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCC
Confidence            69999999 84   455444    333  23 58999999997 21    2222333221 2345543 47899999999


Q ss_pred             CCEEEEcC---CC---------CCCCCC--------CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH
Q 018265          115 MDIVIIPA---GV---------PRKPGM--------TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA  174 (358)
Q Consensus       115 aDiVIi~a---g~---------~~~~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~  174 (358)
                      |||||.+.   |.         |.++|.        .......+|+++++++++.|+++||+||+||+|||+|++|+++ 
T Consensus        75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~-  153 (425)
T cd05197          75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV-  153 (425)
T ss_pred             CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH-
Confidence            99999974   32         334432        2567789999999999999999999999999999999998764 


Q ss_pred             HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE-ecCCCcccccccccCC-----------------
Q 018265          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAGVTILPLLSQVKP-----------------  236 (358)
Q Consensus       175 ~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G-~hg~~~~vp~~s~~~v-----------------  236 (358)
                         ++.  +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| ||+.     .||..++                 
T Consensus       154 ---~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~  222 (425)
T cd05197         154 ---RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKS  222 (425)
T ss_pred             ---HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccC
Confidence               565  478899999877 8999999999999999999999999 9974     2222110                 


Q ss_pred             ---------------------------CCC------CC----h-------------hH---H-HHHHHHHhcC--cceee
Q 018265          237 ---------------------------SCS------LT----P-------------TE---I-DYLTDRIQNG--GTEVV  260 (358)
Q Consensus       237 ---------------------------~~~------~~----~-------------~~---~-~~l~~~v~~~--~~~ii  260 (358)
                                                 +..      +.    +             ++   + +++.+..+..  ....-
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~  302 (425)
T cd05197         223 KDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVV  302 (425)
T ss_pred             ccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChh
Confidence                                       000      00    0             00   0 1122222110  00000


Q ss_pred             ecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHH
Q 018265          261 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERA  336 (358)
Q Consensus       261 ~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~  336 (358)
                      +.. .++...|+  ..++++++||++|++.   ++.+. -++|.+   |+|.++++||+++++|+.++.. ++|++..++
T Consensus       303 ~~~-~r~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~~  375 (425)
T cd05197         303 ELI-KRGGRKYS--EAAIPLIRALLNDNGA---RFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVKG  375 (425)
T ss_pred             hhh-hcCCcccH--HHHHHHHHHHHcCCCe---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHHH
Confidence            000 11233344  7899999999998763   44444 356765   8899999999999999999876 699998888


Q ss_pred             HHHHHHHHHHHHHH
Q 018265          337 GLEKAKKELAGSIQ  350 (358)
Q Consensus       337 ~l~~s~~~l~~~~~  350 (358)
                      +++.-...-+-.++
T Consensus       376 Li~~~~~~e~l~ve  389 (425)
T cd05197         376 LLRQRKMRERLALE  389 (425)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77765444333333

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK15076 alpha-galactosidase; Provisional

Probab=99.97  E-value=1.1e-30  Score=260.41  Aligned_cols=289  Identities=18%  Similarity=0.173  Sum_probs=194.6

Q ss_pred             CCEEEEEcCCCchHHHHHH--HHH-hCCCC-cEEEEEeCCC--ch-hHHHHHhcCC--CCCeEEEEeCCCcHHhhhCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMD--TNAVVRGFLGQQQLEDALTGMD  116 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~--~l~-~~~~~-~el~L~D~~~--~~-g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aD  116 (358)
                      ++||+|||| |++|++.++  .++ ..++. .||+|+|+++  ++ +..+ +.+..  .....+.. .++|+++|++|||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence            369999998 999999877  665 34554 4999999987  22 3333 33321  12233433 3679889999999


Q ss_pred             EEEEcCCCC-CCCC--------------CCHHhH--------HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHH
Q 018265          117 IVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA  173 (358)
Q Consensus       117 iVIi~ag~~-~~~g--------------~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~  173 (358)
                      |||++++.+ ++++              ++|.+.        +.+|++++++++++|+++||++|+|++|||+|++|+.+
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~  157 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM  157 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence            999998876 3434              455566        89999999999999999999999999999999998653


Q ss_pred             HHHHHHhCCCCCCcEEEee--eccHHHHHHHHHHHhCCCCCCCceEEEE-ecCC---------Ccccccccc---c----
Q 018265          174 AEVFKKVGTYDPKRLLGVT--MLDVVRANTFVAEVLGLDPREVDVPVVG-GHAG---------VTILPLLSQ---V----  234 (358)
Q Consensus       174 ~~~~~~~~~~p~~kviG~t--~lds~R~~~~lA~~l~v~~~~v~~~v~G-~hg~---------~~~vp~~s~---~----  234 (358)
                          +   ++|+.||||+|  .+++.   +.+|+.+|+++++|++++.| ||..         ++.+|....   .    
T Consensus       158 ----~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~  227 (431)
T PRK15076        158 ----N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTR  227 (431)
T ss_pred             ----h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCch
Confidence                3   67889999998  36653   88999999999999999999 4433         234442110   0    


Q ss_pred             ---CCC-----------C-----------CC----ChhHHHHHHH---HHhcCcce-------ee-ecccCCCcccccHH
Q 018265          235 ---KPS-----------C-----------SL----TPTEIDYLTD---RIQNGGTE-------VV-EAKTGAGSATLSMA  274 (358)
Q Consensus       235 ---~v~-----------~-----------~~----~~~~~~~l~~---~v~~~~~~-------ii-~~~~gkg~t~~s~A  274 (358)
                         .++           .           .+    .++..+++..   ...+++.+       .+ +.++++..-.-..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (431)
T PRK15076        228 CQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRSR  307 (431)
T ss_pred             hcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccch
Confidence               000           0           01    1222222111   00011111       10 11111100001134


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018265          275 YAAAKFADACLRGLRGDAGVIECAY-VASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQ  350 (358)
Q Consensus       275 ~ai~~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  350 (358)
                      ..+++++++|.+|.+.   ++.+++ .+|.+   |+|.++++||.++++|+.++.. ++|++..+++++.-...=+-.++
T Consensus       308 e~a~~ii~ai~~~~~~---~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~~~~~~e~l~ve  383 (431)
T PRK15076        308 EYASTIIEAIETGEPS---VIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNRTNINVQELTVE  383 (431)
T ss_pred             HHHHHHHHHHhcCCce---EEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            7899999999998762   554544 46765   8899999999999999999877 69999999987765544443444


Q ss_pred             H
Q 018265          351 K  351 (358)
Q Consensus       351 ~  351 (358)
                      .
T Consensus       384 A  384 (431)
T PRK15076        384 A  384 (431)
T ss_pred             H
Confidence            3

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.97  E-value=5.5e-30  Score=254.11  Aligned_cols=281  Identities=17%  Similarity=0.190  Sum_probs=188.3

Q ss_pred             CEEEEEcCCCchHH-HHHHHHHhC-C-C-CcEEEEEeCC-C-ch----hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCC
Q 018265           47 FKVAVLGAAGGIGQ-PLAMLMKIN-P-L-VSVLHLYDVV-N-TP----GVTADISHMDTNAVVRGFLGQQQLEDALTGMD  116 (358)
Q Consensus        47 ~KI~IiGa~G~vG~-~~a~~l~~~-~-~-~~el~L~D~~-~-~~----g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aD  116 (358)
                      |||+|||| |++-. .+...|+.. . + .+||+|+|++ + ..    ..+..+.+.. .+.++.. .|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence            69999999 75311 122233432 2 3 5899999999 5 11    1122222221 2344443 4689999999999


Q ss_pred             EEEEcCCCCCCCCCC--------------------HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHH
Q 018265          117 IVIIPAGVPRKPGMT--------------------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       117 iVIi~ag~~~~~g~~--------------------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~  176 (358)
                      |||++.+.+..++++                    ....+.+|++++++++++|+++|||||+|++|||+|++|+++   
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~---  154 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV---  154 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence            999987765444333                    344588999999999999999999999999999999997654   


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE-ecCC---------Cccccc----------------
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAG---------VTILPL----------------  230 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G-~hg~---------~~~vp~----------------  230 (358)
                       ++.+   +.|+||+|+.+ .|+++.+|+.+|+++++++++++| ||..         ++.+|.                
T Consensus       155 -~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~  229 (419)
T cd05296         155 -LRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLL  229 (419)
T ss_pred             -HHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccc
Confidence             5654   67999999875 799999999999999999999999 8765         234552                


Q ss_pred             cccc------CCCCC------CChh--------------HHH----HHHHHHhcCcc-eeeecccCCCcccccHHHHHHH
Q 018265          231 LSQV------KPSCS------LTPT--------------EID----YLTDRIQNGGT-EVVEAKTGAGSATLSMAYAAAK  279 (358)
Q Consensus       231 ~s~~------~v~~~------~~~~--------------~~~----~l~~~v~~~~~-~ii~~~~gkg~t~~s~A~ai~~  279 (358)
                      |+..      .+++.      +.++              .++    ++.+....... +..+....++...||  ..+++
T Consensus       230 ~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~--e~a~~  307 (419)
T cd05296         230 FGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYS--EAALA  307 (419)
T ss_pred             hHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchH--HHHHH
Confidence            1100      00100      0111              111    22222221100 000000012334444  78999


Q ss_pred             HHHHHHccCCCCCcEEEee-EEeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHH
Q 018265          280 FADACLRGLRGDAGVIECA-YVASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE  344 (358)
Q Consensus       280 ii~ai~~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  344 (358)
                      +++||++|++.   ++.++ -.+|.+   |+|.++++||.++++|+.++.. ++|++..+++++.-...
T Consensus       308 ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~~~  372 (419)
T cd05296         308 LISAIYNDKGD---IHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVKAY  372 (419)
T ss_pred             HHHHHhcCCCc---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHHHH
Confidence            99999998753   44444 457765   8899999999999999999876 69999998886654433

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.97  E-value=1.6e-28  Score=244.55  Aligned_cols=286  Identities=18%  Similarity=0.208  Sum_probs=191.3

Q ss_pred             CEEEEEcCCCchHHHHHHH----HHhC--CC-CcEEEEEeCCC-chh----HHHHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           47 FKVAVLGAAGGIGQPLAML----MKIN--PL-VSVLHLYDVVN-TPG----VTADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~----l~~~--~~-~~el~L~D~~~-~~g----~~~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      |||+|||| |+   +.++.    |+..  .+ .++|+|+|+++ ...    .+..+.+.. ...++.. .|+|+++|++|
T Consensus         1 ~KI~iIGa-GS---~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~-~Ttdr~eAl~g   74 (437)
T cd05298           1 FKIVIAGG-GS---TYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFV-YTTDPEEAFTD   74 (437)
T ss_pred             CeEEEECC-cH---HHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EECCHHHHhCC
Confidence            79999999 74   34443    3333  23 48999999998 222    223333221 2345554 46899999999


Q ss_pred             CCEEEEcC---CC---------CCCCCC--------CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH
Q 018265          115 MDIVIIPA---GV---------PRKPGM--------TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA  174 (358)
Q Consensus       115 aDiVIi~a---g~---------~~~~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~  174 (358)
                      |||||++.   |.         |.++|.        .....+.||++++.+++++|+++||+||+|++|||++++|+++ 
T Consensus        75 ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~-  153 (437)
T cd05298          75 ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL-  153 (437)
T ss_pred             CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH-
Confidence            99999964   32         334432        2566789999999999999999999999999999999998654 


Q ss_pred             HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE-ecCC----------Ccccccccc----------
Q 018265          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAG----------VTILPLLSQ----------  233 (358)
Q Consensus       175 ~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G-~hg~----------~~~vp~~s~----------  233 (358)
                         ++.  +|+.||||+|+... .++..+|+.+|+++++++..+.| ||..          ++.+|....          
T Consensus       154 ---~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~  227 (437)
T cd05298         154 ---RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPP  227 (437)
T ss_pred             ---HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCcc
Confidence               454  77899999998775 47899999999999999999999 3322          134442110          


Q ss_pred             ----c---C-------------------CCCC-----C-Chh--------------HHHHHHHHHhcCc-----ceeeec
Q 018265          234 ----V---K-------------------PSCS-----L-TPT--------------EIDYLTDRIQNGG-----TEVVEA  262 (358)
Q Consensus       234 ----~---~-------------------v~~~-----~-~~~--------------~~~~l~~~v~~~~-----~~ii~~  262 (358)
                          .   .                   +++.     + .++              .+++..++..+..     .+-.+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~  307 (437)
T cd05298         228 DSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEG  307 (437)
T ss_pred             cccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhh
Confidence                0   0                   1110     0 100              1111112111000     000000


Q ss_pred             ccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHH
Q 018265          263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY-VASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL  338 (358)
Q Consensus       263 ~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l  338 (358)
                      .+.. +.  ..|.++++++++|++|++   .+++++. ++|.|   ++|+++|+||+||++|+.++.- ++|++...+++
T Consensus       308 ~~~~-~~--~ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l~  380 (437)
T cd05298         308 STFH-VD--VHGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGLM  380 (437)
T ss_pred             hhhh-cc--chHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHHH
Confidence            0000 11  146889999999999875   4788874 57776   6899999999999999999876 69999999987


Q ss_pred             HHHHHHHHHHHHHh
Q 018265          339 EKAKKELAGSIQKG  352 (358)
Q Consensus       339 ~~s~~~l~~~~~~~  352 (358)
                      +.-...-+-.++.+
T Consensus       381 ~~~~~~e~l~veAa  394 (437)
T cd05298         381 EQQVAYEKLLVEAY  394 (437)
T ss_pred             HHHHHHHHHHHHHH
Confidence            76555444444433

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.95  E-value=2.4e-27  Score=231.71  Aligned_cols=293  Identities=19%  Similarity=0.242  Sum_probs=191.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHH--HHHhCC-C-CcEEEEEeCCC-chhHH----HHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVN-TPGVT----ADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~--~l~~~~-~-~~el~L~D~~~-~~g~~----~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      ++++||+|||| |+++..-..  .|.+.+ + ..||+|+|+++ .....    ..+.+.. .+.++.. .++|+++||+|
T Consensus         1 m~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~-~ttd~~eAl~g   77 (442)
T COG1486           1 MKKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVE-ATTDRREALEG   77 (442)
T ss_pred             CCcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EecCHHHHhcC
Confidence            45679999999 854433321  223332 3 57999999987 22222    2222222 2336654 36899999999


Q ss_pred             CCEEEEcC---C---------CCCCCCC--------CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH
Q 018265          115 MDIVIIPA---G---------VPRKPGM--------TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA  174 (358)
Q Consensus       115 aDiVIi~a---g---------~~~~~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~  174 (358)
                      ||||+.+.   |         +|.|+|.        .......|++|++.+|++.|+++||+||+|++|||+.++|+++ 
T Consensus        78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv-  156 (442)
T COG1486          78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV-  156 (442)
T ss_pred             CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH-
Confidence            99999964   2         3555552        2455678999999999999999999999999999999997654 


Q ss_pred             HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCC-CCCceEEEE-ecCC---------Cccccc-------------
Q 018265          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVG-GHAG---------VTILPL-------------  230 (358)
Q Consensus       175 ~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~-~~v~~~v~G-~hg~---------~~~vp~-------------  230 (358)
                         +++  +|..|++|+|+... -....+|+.||+++ ++++..+.| ||..         .+.+|.             
T Consensus       157 ---~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~  230 (442)
T COG1486         157 ---RRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSE  230 (442)
T ss_pred             ---HHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCc
Confidence               554  45449999998764 46899999999975 999999999 4432         122221             


Q ss_pred             ----------ccccC----C---CCC-----------------------CChhHHHHHHHHH----hc-CcceeeecccC
Q 018265          231 ----------LSQVK----P---SCS-----------------------LTPTEIDYLTDRI----QN-GGTEVVEAKTG  265 (358)
Q Consensus       231 ----------~s~~~----v---~~~-----------------------~~~~~~~~l~~~v----~~-~~~~ii~~~~g  265 (358)
                                |....    .   ++.                       ...+++.+.+.+.    .+ .-.+..+....
T Consensus       231 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~  310 (442)
T COG1486         231 PENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEK  310 (442)
T ss_pred             cccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhh
Confidence                      11000    0   000                       0111111111110    11 00000010011


Q ss_pred             CCcc--cccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          266 AGSA--TLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       266 kg~t--~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                      ++.+  .|+  .+++++++||++|++.   ++.+. -.+|.+   |+|.++++||.|+++|++++.. ++|+++-+++++
T Consensus       311 ~~~~~~~~~--e~a~~ii~Ai~~~~~~---~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~~  384 (442)
T COG1486         311 RIGAGKYSS--EYASNIINAIENNKPS---RIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLMH  384 (442)
T ss_pred             cCCcccccH--HHHHHHHHHHhcCCce---EEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHHH
Confidence            2222  444  7889999999999763   55454 457875   8999999999999999999887 699999999888


Q ss_pred             HHHHHHHHHHHHh
Q 018265          340 KAKKELAGSIQKG  352 (358)
Q Consensus       340 ~s~~~l~~~~~~~  352 (358)
                      .....-+-.++.+
T Consensus       385 ~~i~~e~l~veA~  397 (442)
T COG1486         385 TNINVEELTVEAA  397 (442)
T ss_pred             HHHHHHHHHHHHH
Confidence            8766555444443

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.95  E-value=1.4e-26  Score=231.09  Aligned_cols=286  Identities=19%  Similarity=0.160  Sum_probs=193.8

Q ss_pred             CEEEEEcCCCchHHHHHH--HHHhC-CCC-cEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~--~l~~~-~~~-~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      +||+|||| |.+|++.+.  .++.. .+. .+|+|+|+++  ++....++.+..  .....+.. .++|+++|++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence            58999998 999999877  45433 332 4999999987  344444443321  11223332 367999999999999


Q ss_pred             EEcCCCCCCCCCCH----------------------HhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHH
Q 018265          119 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       119 Ii~ag~~~~~g~~r----------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~  176 (358)
                      |++++....++.++                      .....+|++++.++++.++++||++|++++|||++++|+++   
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~---  155 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL---  155 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence            99987544433333                      56778999999999999999999999999999999998654   


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE-ecCC---------Ccccccccc-----------cC
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAG---------VTILPLLSQ-----------VK  235 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G-~hg~---------~~~vp~~s~-----------~~  235 (358)
                       ++.++   .|++|+|+. +.+++..+|+.+|+++++|+++++| ||..         ++.+|....           ..
T Consensus       156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~  230 (423)
T cd05297         156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLS  230 (423)
T ss_pred             -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcc
Confidence             66655   699999865 6789999999999999999999999 4433         234442111           11


Q ss_pred             -CC-----------C-------C------CChhHHHH------------------HHHHHhcCcceeeec--ccCCCccc
Q 018265          236 -PS-----------C-------S------LTPTEIDY------------------LTDRIQNGGTEVVEA--KTGAGSAT  270 (358)
Q Consensus       236 -v~-----------~-------~------~~~~~~~~------------------l~~~v~~~~~~ii~~--~~gkg~t~  270 (358)
                       +.           .       .      ..++....                  +........  .-+.  ....+...
T Consensus       231 ~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  308 (423)
T cd05297         231 PVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLI--LAEIDKEELDPVKR  308 (423)
T ss_pred             cchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhc--cchhcchhcccccc
Confidence             10           0       0      01011110                  111111100  0000  00011222


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA  346 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  346 (358)
                      +  +..++++++||.+|++   .++.++ -++|.+   |+|.++++||.|+++|+.++.. ++|++..+++++.-...-+
T Consensus       309 ~--~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~~~e~  382 (423)
T cd05297         309 S--GEYASPIIEALVTGKP---RRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRINVQE  382 (423)
T ss_pred             c--hHHHHHHHHHHhcCCc---eEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHHHHHH
Confidence            3  4678999999999865   355454 356765   8899999999999999999877 6999999988776554444


Q ss_pred             HHHH
Q 018265          347 GSIQ  350 (358)
Q Consensus       347 ~~~~  350 (358)
                      -.++
T Consensus       383 l~ve  386 (423)
T cd05297         383 LAVE  386 (423)
T ss_pred             HHHH
Confidence            3343

linked to 3D####ucture

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.84  E-value=2.8e-20  Score=164.17  Aligned_cols=152  Identities=20%  Similarity=0.234  Sum_probs=105.4

Q ss_pred             EEEEEcCCCchHHHHH--HHHHhCC-C-CcEEEEEeCCC-c----hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           48 KVAVLGAAGGIGQPLA--MLMKINP-L-VSVLHLYDVVN-T----PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a--~~l~~~~-~-~~el~L~D~~~-~----~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      ||+|||| |++-....  ..+...+ + .+||+|+|+|+ .    ...+..+.... ...++.. .|+|+++|++|||||
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~-~ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVE-ATTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEE-EESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEE-EeCCHHHHhCCCCEE
Confidence            8999999 86644432  2334433 3 46999999997 1    12222332221 2334433 368999999999999


Q ss_pred             EEcCC------------CCCCCCCC----------HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHH
Q 018265          119 IIPAG------------VPRKPGMT----------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       119 Ii~ag------------~~~~~g~~----------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~  176 (358)
                      |++..            .|.++|..          ......|++|++.++++.|+++|||||+||+|||+.++|..+   
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~---  154 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL---  154 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence            99754            35565522          566789999999999999999999999999999999997544   


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCC
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGL  209 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v  209 (358)
                       .+.  +|..|++|+|+... -+...+|+.||.
T Consensus       155 -~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  155 -SRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             -HHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             -HHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence             444  45579999998764 578999999874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.86  E-value=9e-08  Score=93.04  Aligned_cols=113  Identities=19%  Similarity=0.296  Sum_probs=81.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--------------hHHHHHh-cCCCCCeEEEEeCCCcHHhh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--------------GVTADIS-HMDTNAVVRGFLGQQQLEDA  111 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--------------g~~~dl~-~~~~~~~v~~~~~t~d~~~a  111 (358)
                      |||+|+|. |.||...+..|++.|+  +++++|+++.+              |. .+|. +.....+++.   |+|+++|
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgL-e~ll~~~~~~gRl~f---Ttd~~~a   73 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGL-EELLKENLASGRLRF---TTDYEEA   73 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccH-HHHHHhccccCcEEE---EcCHHHH
Confidence            79999998 9999999999999998  99999998611              11 1121 1111123443   6899999


Q ss_pred             hCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe--cCCCCccHHH
Q 018265          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPI  172 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~t~~  172 (358)
                      ++++|+++|+.|.|.++..      ..++..+...++.|.++.+...+++.  |-|+.....+
T Consensus        74 ~~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v  130 (414)
T COG1004          74 VKDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEV  130 (414)
T ss_pred             HhcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHH
Confidence            9999999999999977622      22467788888888887765344444  6888776554

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.73  E-value=3.3e-08  Score=87.78  Aligned_cols=118  Identities=26%  Similarity=0.397  Sum_probs=76.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-h--hHHHH----H-hcCCC--------CCeEEEEeCCCcHH
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-P--GVTAD----I-SHMDT--------NAVVRGFLGQQQLE  109 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~--g~~~d----l-~~~~~--------~~~v~~~~~t~d~~  109 (358)
                      ||+|+|| |.+|..+|..++..|+  +++|+|.+.  . .  ....+    + .....        ..+++.   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999998 9999999999999998  999999987  1 1  11111    1 11110        123443   46886


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      ++. +||+||.+.              .+++++.+++..++.+++ |+++  +.||...+-.   ++. ..... .++|+
T Consensus        75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~i--lasnTSsl~i---~~l-a~~~~-~p~R~  132 (180)
T PF02737_consen   75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTI--LASNTSSLSI---SEL-AAALS-RPERF  132 (180)
T ss_dssp             GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSE--EEE--SSS-H---HHH-HTTSS-TGGGE
T ss_pred             HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCce--EEecCCCCCH---HHH-HhccC-cCceE
Confidence            655 999999984              457899999999999998 6774  4688776553   222 22223 35678


Q ss_pred             EEeee
Q 018265          189 LGVTM  193 (358)
Q Consensus       189 iG~t~  193 (358)
                      +|+-.
T Consensus       133 ig~Hf  137 (180)
T PF02737_consen  133 IGMHF  137 (180)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88753

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.64  E-value=1.6e-07  Score=89.70  Aligned_cols=122  Identities=24%  Similarity=0.306  Sum_probs=85.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chh--HHHH-Hhc---CC--C----CCeEEEEeCCCcHHh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPG--VTAD-ISH---MD--T----NAVVRGFLGQQQLED  110 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g--~~~d-l~~---~~--~----~~~v~~~~~t~d~~~  110 (358)
                      -+||+|||| |.+|+.+|..++..|+  +|+|+|+++   ..+  .... +..   ..  .    ...+..+..++|+ .
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999998 9999999999999767  999999986   111  1111 111   10  0    1112223345676 5


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      ++++||+||..+              .+|.++.+++..++.+++ |++  |+.||.+.+...-++    .... .|+|++
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia----~~~~-rper~i  137 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELA----EALK-RPERFI  137 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHH----HHhC-CchhEE
Confidence            899999999984              678999999999999999 688  558999887653222    2222 356788


Q ss_pred             Eee
Q 018265          190 GVT  192 (358)
Q Consensus       190 G~t  192 (358)
                      |+.
T Consensus       138 G~H  140 (307)
T COG1250         138 GLH  140 (307)
T ss_pred             EEe
Confidence            873

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.52  E-value=1.3e-06  Score=84.47  Aligned_cols=118  Identities=17%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhH-----H--H-HHhcCC-----CCCeEEEEeCCCcHHhhh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGV-----T--A-DISHMD-----TNAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~-----~--~-dl~~~~-----~~~~v~~~~~t~d~~~al  112 (358)
                      .||+|||+ |.+|+.+|..++..|+  +++++|++. ....     .  + .+....     ...+++.   ++++++++
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av   81 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACV   81 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHh
Confidence            48999998 9999999999999998  999999976 1111     0  1 111110     0122332   46788999


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      ++||+||.+.              .+|..+.+++...+.+++| ++  |+.||.+.+...   ++ ...... ++|++|+
T Consensus        82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s---~l-a~~~~~-p~R~~g~  140 (321)
T PRK07066         82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPT---DF-YARATH-PERCVVG  140 (321)
T ss_pred             cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHH---HH-HHhcCC-cccEEEE
Confidence            9999999984              4568888999999999985 55  557888866542   22 222232 4677776

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.46  E-value=7.7e-07  Score=79.40  Aligned_cols=133  Identities=20%  Similarity=0.279  Sum_probs=76.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----------------CCCeEEEEeCCCcHHh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLED  110 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~t~d~~~  110 (358)
                      |||+|||. |+||..+|..|+..|+  +++.+|+++.  .+..++...                ...+++.   ++|+++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~--~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEE--KVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEE   72 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HH--HHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChH--HHHHHhhccccccccchhhhhccccccccchh---hhhhhh
Confidence            79999998 9999999999999998  9999999861  111122211                1234554   468889


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      ++++||++|++.+.|...+.+      -+...+.+.++.|.++. ++.+|++= |=|....-.++...+.+.++..  .=
T Consensus        73 ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~  144 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--ED  144 (185)
T ss_dssp             HHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TC
T ss_pred             hhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cC
Confidence            999999999999888655321      12344455555555544 34444333 6788776645555566665533  33


Q ss_pred             EEeeecc
Q 018265          189 LGVTMLD  195 (358)
Q Consensus       189 iG~t~ld  195 (358)
                      |+++..+
T Consensus       145 f~la~~P  151 (185)
T PF03721_consen  145 FHLAYSP  151 (185)
T ss_dssp             EEEEE--
T ss_pred             CeEEECC
Confidence            4554433

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.46  E-value=3.7e-06  Score=81.98  Aligned_cols=170  Identities=13%  Similarity=0.016  Sum_probs=105.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHh-cCC--CCCeEEEEeCC----CcHHhhhCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS-HMD--TNAVVRGFLGQ----QQLEDALTG  114 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~-~~~--~~~~v~~~~~t----~d~~~al~~  114 (358)
                      .+++||.|+||+|++|++++..|+..+.  +|+.+|+...  .....++. ...  ....+..+.+.    .++.+.+++
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~   90 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN   90 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence            3457999999999999999999999887  8999997541  11111111 000  01123222211    234556799


Q ss_pred             CCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC------CCccHHHHHHHHHHhCCCCCC
Q 018265          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP------VNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP------~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      +|+||++|+....+  .+........|+....++.+.+++...+ .++++|..      .+...       .+..-..+.
T Consensus        91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~~-------~e~~~~~p~  162 (348)
T PRK15181         91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLPK-------IEERIGRPL  162 (348)
T ss_pred             CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCCC-------CCCCCCCCC
Confidence            99999998854321  1234556788999999999999887533 34444321      11100       011112244


Q ss_pred             cEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          187 RLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      ..+|.+.+...++...+++..|++...++ +.++|.+.
T Consensus       163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~  200 (348)
T PRK15181        163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQ  200 (348)
T ss_pred             ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence            57888877777776667777788776665 56888653

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.45  E-value=1.9e-06  Score=82.02  Aligned_cols=119  Identities=19%  Similarity=0.268  Sum_probs=80.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--H---HH-HhcCC-C--------CCeEEEEeCCCcH
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T---AD-ISHMD-T--------NAVVRGFLGQQQL  108 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~---~d-l~~~~-~--------~~~v~~~~~t~d~  108 (358)
                      .||+|||+ |.+|..+|..++..|+  +++++|+++ .  .+.  .   ++ +.+.. .        ..+++   .++|+
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~---~~~~~   79 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR---FTTDL   79 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE---eeCCH
Confidence            38999998 9999999999999998  999999987 1  111  0   11 11110 0        01233   34677


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                       +++++||+||.+.              .++.++.+++...+.+++  |++  |++||........+    .....+ ++
T Consensus        80 -~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~l----a~~~~~-~~  137 (286)
T PRK07819         80 -GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKL----AAATKR-PG  137 (286)
T ss_pred             -HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHH----HhhcCC-Cc
Confidence             6799999999984              567888899999999997  465  34677776554322    233333 46


Q ss_pred             cEEEeee
Q 018265          187 RLLGVTM  193 (358)
Q Consensus       187 kviG~t~  193 (358)
                      |++|+..
T Consensus       138 r~~g~hf  144 (286)
T PRK07819        138 RVLGLHF  144 (286)
T ss_pred             cEEEEec
Confidence            7877743

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.41  E-value=6.9e-06  Score=75.08  Aligned_cols=102  Identities=20%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||++|.+|++++..|...+.  +|.++|++.  ......+..+...  ....+.. . ++.+++++++|+||++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~-~-~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVT-G-ADNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEE-E-eChHHHHhcCCEEEEEC
Confidence            6999998449999999999998886  899999875  2222222221110  0111111 1 23468899999999985


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                      ..                ..+.++++.+....++.+||-++||...
T Consensus        77 p~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        77 PW----------------DHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             CH----------------HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            21                2223333444433334577788999875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.41  E-value=4.3e-06  Score=88.60  Aligned_cols=179  Identities=15%  Similarity=0.074  Sum_probs=108.7

Q ss_pred             cccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc--
Q 018265           32 GLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ--  107 (358)
Q Consensus        32 ~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d--  107 (358)
                      +-+|-.|..   .+.|||.|+||+||+|++++..|+.. ++  +|+.+|++... . .++..   ...+..+.+. +|  
T Consensus       304 ~~~~~~~~~---~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~-~-~~~~~---~~~~~~~~gDl~d~~  373 (660)
T PRK08125        304 LNSKPACSA---KRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDA-I-SRFLG---HPRFHFVEGDISIHS  373 (660)
T ss_pred             ecccchhhh---hcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchh-h-hhhcC---CCceEEEeccccCcH
Confidence            555666654   47889999999999999999999874 56  99999976521 1 11111   1122222111 11  


Q ss_pred             --HHhhhCCCCEEEEcCCCCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccH--HHHHHHHHH-
Q 018265          108 --LEDALTGMDIVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKK-  179 (358)
Q Consensus       108 --~~~al~~aDiVIi~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t--~~~~~~~~~-  179 (358)
                        ++++++++|+||++|+...  .......+.+..|+....++.++++++. . .+|++|.. +.-..  ....+-... 
T Consensus       374 ~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~E~~~~~  451 (660)
T PRK08125        374 EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFDEDTSNL  451 (660)
T ss_pred             HHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcCcccccc
Confidence              3457899999999987543  2223345677889999999999999875 3 45554432 11100  000000000 


Q ss_pred             --hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          180 --VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       180 --~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                        .+.-++...+|.+.+...++...+++..|++..-++ ..++|.+
T Consensus       452 ~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        452 IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             ccCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence              000012346888877777777777888888776665 4578864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.40  E-value=2.9e-06  Score=80.76  Aligned_cols=120  Identities=20%  Similarity=0.329  Sum_probs=76.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHH----Hh-----cCCC---------CCeEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD----IS-----HMDT---------NAVVRGFLGQQ  106 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~d----l~-----~~~~---------~~~v~~~~~t~  106 (358)
                      .+||+|||+ |.+|+.+|..++..|.  +|+++|+++ ......+    +.     ....         ...++.   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            359999998 9999999999999887  999999976 1111111    10     0000         012332   46


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |+++++++||+||++.              ..+.++.+++.+++.++++ +++|  ++|.......   +. ...... +
T Consensus        77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~---~~-~~~~~~-~  135 (287)
T PRK08293         77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPS---QF-AEATGR-P  135 (287)
T ss_pred             CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHH---HH-HhhcCC-c
Confidence            8888899999999984              2346777788888888875 5533  4666654331   21 222222 4


Q ss_pred             CcEEEee
Q 018265          186 KRLLGVT  192 (358)
Q Consensus       186 ~kviG~t  192 (358)
                      .|++|+.
T Consensus       136 ~r~vg~H  142 (287)
T PRK08293        136 EKFLALH  142 (287)
T ss_pred             ccEEEEc
Confidence            5777763

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.40  E-value=7.6e-06  Score=79.19  Aligned_cols=175  Identities=16%  Similarity=0.065  Sum_probs=102.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVI  119 (358)
                      .++||.|+||+|++|++++..|+..|.  +|++++++. ......++........+..+.+    ..++.++++++|+||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            356899999999999999999999887  887776654 2221111211111112222211    124567788999999


Q ss_pred             EcCCCCCCCCCC-HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC-Ccc------HHHHHHHH------HHhCCCCC
Q 018265          120 IPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-NST------VPIAAEVF------KKVGTYDP  185 (358)
Q Consensus       120 i~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-d~~------t~~~~~~~------~~~~~~p~  185 (358)
                      ++|+.......+ ..++...|+.....+++.+.+...-..++++|.-. ...      .....+-.      .. ...++
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~-~~~~p  164 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLT-SEKPP  164 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhh-hcCCc
Confidence            999743211122 23456789999999999998764223455544321 100      00000000      00 01234


Q ss_pred             CcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      ...+|.+.+...++...+++..|++..-++ ..|+|.+
T Consensus       165 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            556777776666677777777787665554 4688865

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.38  E-value=1.9e-07  Score=88.41  Aligned_cols=120  Identities=22%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEE----EEeCC----CcHHhhhC--CCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVR----GFLGQ----QQLEDALT--GMD  116 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~----~~~~t----~d~~~al~--~aD  116 (358)
                      |.|+||+|++|+.++..|+..+. .+|+++|.++  ......++......+.++    ...++    ..+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            68999999999999999998865 4899999987  344445553111111121    11111    23456677  999


Q ss_pred             EEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec----CCCCcc
Q 018265          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNST  169 (358)
Q Consensus       117 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t----NP~d~~  169 (358)
                      +|+++|....-+  ...-.+.+..|+--.+++++...+++-+-.|.+.|    ||.++|
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm  138 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM  138 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH
Confidence            999998764322  22356678999999999999999998776666654    566555

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.37  E-value=1.5e-06  Score=92.58  Aligned_cols=120  Identities=19%  Similarity=0.227  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--HHH-----HhcCC-C-------CCeEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TAD-----ISHMD-T-------NAVVRGFLGQQ  106 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~~d-----l~~~~-~-------~~~v~~~~~t~  106 (358)
                      +-.||+|||| |.+|..+|..++..|+  +++|+|++. .  .+.  ..+     ..... .       ..+++   .++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~  385 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT---PTL  385 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE---EeC
Confidence            3459999998 9999999999999998  999999986 1  111  111     11110 0       12333   356


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |+ +++++||+||.+.              .+++++.+++..++.+++ |++  |+.||...+-..-+    ..... .|
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~i----a~~~~-~p  443 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLL----AKALK-RP  443 (714)
T ss_pred             CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHH----HhhcC-Cc
Confidence            77 6799999999984              567899999999999999 566  45899888664322    22233 35


Q ss_pred             CcEEEee
Q 018265          186 KRLLGVT  192 (358)
Q Consensus       186 ~kviG~t  192 (358)
                      +|++|+-
T Consensus       444 ~r~ig~H  450 (714)
T TIGR02437       444 ENFCGMH  450 (714)
T ss_pred             ccEEEEe
Confidence            7888884

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.35  E-value=3.7e-06  Score=79.87  Aligned_cols=118  Identities=18%  Similarity=0.291  Sum_probs=80.3

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCCCCCCC
Q 018265           50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVPRKP  128 (358)
Q Consensus        50 ~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~~  128 (358)
                      .|+||+||+|++++..|+..+...+|..+|+........++........+.. +....++++|++++|+||++|+...-.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            4899999999999999999985569999998662222122222211001111 222357889999999999998754333


Q ss_pred             C-CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcc
Q 018265          129 G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (358)
Q Consensus       129 g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  169 (358)
                      + .....+..-|+...+.+.+...+..-+  -+|+|..++++
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~~vv  120 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSISVV  120 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCccee
Confidence            3 456778899999999999999987543  34455554443

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PLN02650 dihydroflavonol-4-reductase

Probab=98.35  E-value=9.4e-06  Score=79.03  Aligned_cols=177  Identities=16%  Similarity=0.047  Sum_probs=102.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcC-CCCCeEEEEe----CCCcHHhhhCCCCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVRGFL----GQQQLEDALTGMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~-~~~~~v~~~~----~t~d~~~al~~aDiV  118 (358)
                      ..++|.|+||+|++|++++..|+..|.  +|++++++.. .....++... .....+..+.    ....+.++++++|+|
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V   81 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV   81 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence            345999999999999999999999887  8888877541 1111122111 0011222211    123456778899999


Q ss_pred             EEcCCCCCCCCCC-HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcc-----HHHHHHHHH---Hh--CCCCCCc
Q 018265          119 IIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-----VPIAAEVFK---KV--GTYDPKR  187 (358)
Q Consensus       119 Ii~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~-----t~~~~~~~~---~~--~~~p~~k  187 (358)
                      |++|+.......+ ....+..|+.....+++.+.+...-.++|++|.....-     .+...+-.+   ..  ...++..
T Consensus        82 iH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  161 (351)
T PLN02650         82 FHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW  161 (351)
T ss_pred             EEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence            9998753211112 23567889999999999998765323566554331100     000000000   00  0001122


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      .+|.+.+....+...+++..|++..-++ +.++|...
T Consensus       162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~  198 (351)
T PLN02650        162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI  198 (351)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence            5777766666676777778888766664 56888653

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.35  E-value=1.7e-06  Score=92.15  Aligned_cols=118  Identities=18%  Similarity=0.225  Sum_probs=83.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--HH----HH-hcCC-C-------CCeEEEEeCCCcH
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DI-SHMD-T-------NAVVRGFLGQQQL  108 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~~----dl-~~~~-~-------~~~v~~~~~t~d~  108 (358)
                      .||+|||| |.+|..+|..++..|+  +++|+|++. .  .+.  ..    .+ .... .       ..+++   .++|+
T Consensus       314 ~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~---~~~~~  387 (715)
T PRK11730        314 KQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR---PTLDY  387 (715)
T ss_pred             ceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE---EeCCH
Confidence            58999998 9999999999999998  999999986 1  111  11    11 1110 0       12343   34677


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                       +++++||+||.+.              .+++++.+++..++++++| ++  |+.||...+-..-+   . ..... ++|
T Consensus       388 -~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~l---a-~~~~~-p~r  445 (715)
T PRK11730        388 -AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLL---A-KALKR-PEN  445 (715)
T ss_pred             -HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHH---H-hhcCC-Ccc
Confidence             6799999999984              5678999999999999994 66  44899888654222   2 22333 568


Q ss_pred             EEEee
Q 018265          188 LLGVT  192 (358)
Q Consensus       188 viG~t  192 (358)
                      ++|+-
T Consensus       446 ~~g~H  450 (715)
T PRK11730        446 FCGMH  450 (715)
T ss_pred             EEEEe
Confidence            88873

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.35  E-value=2.4e-06  Score=91.25  Aligned_cols=119  Identities=19%  Similarity=0.251  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhH--HHH-H----hcCC-C-------CCeEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV--TAD-I----SHMD-T-------NAVVRGFLGQQ  106 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~--~~d-l----~~~~-~-------~~~v~~~~~t~  106 (358)
                      +-.||+|||| |.+|+.+|..++..|+  +|+|+|+++   ..+.  ..+ +    .... .       ..+++   .++
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~---~~~  407 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT---PTL  407 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeC
Confidence            3358999998 9999999999999998  999999987   1111  111 1    1110 0       12343   356


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |+ +++++||+||.+.              .+|.++.+++..++.+++ |++  |+.||...+-..-+    ...... |
T Consensus       408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~l----a~~~~~-p  465 (737)
T TIGR02441       408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSALPIKDI----AAVSSR-P  465 (737)
T ss_pred             CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHH----HhhcCC-c
Confidence            77 6799999999984              678999999999999999 566  44789888664322    223333 5


Q ss_pred             CcEEEe
Q 018265          186 KRLLGV  191 (358)
Q Consensus       186 ~kviG~  191 (358)
                      +|++|+
T Consensus       466 ~r~ig~  471 (737)
T TIGR02441       466 EKVIGM  471 (737)
T ss_pred             cceEEE
Confidence            688887

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.34  E-value=5.6e-06  Score=83.97  Aligned_cols=167  Identities=20%  Similarity=0.232  Sum_probs=109.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCC--C
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDALTG--M  115 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~--a  115 (358)
                      .+...|.|+||+|++|+.++..++..+. .+|+++|.++  ..-...++.+.....+++.+.+    ..-.+.++++  .
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv  326 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV  326 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence            3456899999999999999999988754 5999999998  3344455554311223333222    2345678888  9


Q ss_pred             CEEEEcCCCCCCCCC--CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec----CCCCccHHHHHHHHHHhCCCCCCcEE
Q 018265          116 DIVIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       116 DiVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t----NP~d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      |+|+++|....-|-.  +-.+-...|+-..++++++..++.=+..|++.|    ||.|+|                    
T Consensus       327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm--------------------  386 (588)
T COG1086         327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM--------------------  386 (588)
T ss_pred             ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh--------------------
Confidence            999999987555533  345667899999999999999988666666655    555444                    


Q ss_pred             EeeeccHHHHHHHHHHHhCC---CCCCC-ceEEEEecCCCcccccccc
Q 018265          190 GVTMLDVVRANTFVAEVLGL---DPREV-DVPVVGGHAGVTILPLLSQ  233 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v---~~~~v-~~~v~G~hg~~~~vp~~s~  233 (358)
                      |.|..-...+-...++..+-   ...-| .+-|+|..|  +.+|+|..
T Consensus       387 GaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG--SViPlFk~  432 (588)
T COG1086         387 GATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG--SVIPLFKK  432 (588)
T ss_pred             hHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC--CCHHHHHH
Confidence            44433233222333222221   11112 345889888  58998874

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.34  E-value=5.7e-06  Score=83.40  Aligned_cols=171  Identities=15%  Similarity=0.037  Sum_probs=101.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      .|||.|+||+|+||++++..|+..|.  +|+.+|+... +....+.+....+.+..+.. .-.+.++.++|+||++|+..
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlAa~~  195 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLACPA  195 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEEEECceec
Confidence            49999999999999999999999887  9999997531 11111111111122333221 11234578999999998753


Q ss_pred             C--CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccH--HHHHHHHHH-hCCCCCCcEEEeeeccHHHH
Q 018265          126 R--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKK-VGTYDPKRLLGVTMLDVVRA  199 (358)
Q Consensus       126 ~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t--~~~~~~~~~-~~~~p~~kviG~t~lds~R~  199 (358)
                      .  ....+..+.+..|+....++++.+++.+  ..+|+++.- +.-..  ....+-.+. ..-+.+...+|.+.+...++
T Consensus       196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~  273 (436)
T PLN02166        196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL  273 (436)
T ss_pred             cchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHH
Confidence            2  2223456778899999999999998875  355655431 10000  000000000 00122345677777666666


Q ss_pred             HHHHHHHhCCCCCCCc-eEEEEec
Q 018265          200 NTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      ...+++..+++..-++ ..++|.+
T Consensus       274 ~~~y~~~~~l~~~ilR~~~vYGp~  297 (436)
T PLN02166        274 AMDYHRGAGVEVRIARIFNTYGPR  297 (436)
T ss_pred             HHHHHHHhCCCeEEEEEccccCCC
Confidence            6666777776655444 3477864

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.32  E-value=3.9e-06  Score=89.27  Aligned_cols=119  Identities=18%  Similarity=0.293  Sum_probs=82.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-c--hhH--HH-HHh----cCC-C-------CCeEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PGV--TA-DIS----HMD-T-------NAVVRGFLGQQ  106 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~-~--~g~--~~-dl~----~~~-~-------~~~v~~~~~t~  106 (358)
                      ..||+|||| |.+|+.+|..++ ..|+  +|+|+|+++ .  .+.  .. .+.    ... .       ..+++   .++
T Consensus       304 i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~---~~~  377 (699)
T TIGR02440       304 IKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALIT---GTT  377 (699)
T ss_pred             ccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeE---EeC
Confidence            358999998 999999999988 4788  999999986 1  111  11 111    110 0       12333   346


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |+ +++++||+||.+.              .+++++.+++..++.++++ ++  |+.||...+...-++    .... .+
T Consensus       378 ~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la----~~~~-~p  435 (699)
T TIGR02440       378 DY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIA----AAAS-RP  435 (699)
T ss_pred             Ch-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHH----HhcC-Cc
Confidence            77 6799999999984              5678999999999999994 66  447888876543222    2223 35


Q ss_pred             CcEEEee
Q 018265          186 KRLLGVT  192 (358)
Q Consensus       186 ~kviG~t  192 (358)
                      +|++|+-
T Consensus       436 ~r~~g~H  442 (699)
T TIGR02440       436 ENVIGLH  442 (699)
T ss_pred             ccEEEEe
Confidence            6888873

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.32  E-value=2.2e-06  Score=91.29  Aligned_cols=119  Identities=19%  Similarity=0.316  Sum_probs=83.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-c--hh--HHHHH-----hcCC-C-------CCeEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTADI-----SHMD-T-------NAVVRGFLGQQ  106 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~-~--~g--~~~dl-----~~~~-~-------~~~v~~~~~t~  106 (358)
                      -.||+|||| |.+|+.+|..++ ..|+  +|+|+|.+. .  .+  ...+.     .... .       ..+++.   ++
T Consensus       309 i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~  382 (708)
T PRK11154        309 VNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---TT  382 (708)
T ss_pred             ccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---eC
Confidence            358999998 999999999998 7788  999999976 1  11  11111     1110 0       123443   46


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |+ +++++||+||.+.              .+|.++.+++..++++++ |++  |+.||...+...-++    ..... +
T Consensus       383 ~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la----~~~~~-p  440 (708)
T PRK11154        383 DY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIA----AAAAR-P  440 (708)
T ss_pred             Ch-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----HhcCc-c
Confidence            77 7899999999984              678999999999999998 677  447898886643222    22233 4


Q ss_pred             CcEEEee
Q 018265          186 KRLLGVT  192 (358)
Q Consensus       186 ~kviG~t  192 (358)
                      +|++|+-
T Consensus       441 ~r~ig~H  447 (708)
T PRK11154        441 EQVIGLH  447 (708)
T ss_pred             cceEEEe
Confidence            6888873

>PLN02427 UDP-apiose/xylose synthase

Probab=98.30  E-value=6.9e-06  Score=81.12  Aligned_cols=115  Identities=16%  Similarity=0.078  Sum_probs=73.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcC---CCCCeEEEEeC----CCcHHhhhCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHM---DTNAVVRGFLG----QQQLEDALTGM  115 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~---~~~~~v~~~~~----t~d~~~al~~a  115 (358)
                      .++|||.|+||+|++|++++..|+.. +.  +|+.+|.+...  ...+...   .....++.+.+    ..++.++++++
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~--~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDK--IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchh--hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            35689999999999999999999987 45  88989865411  1111111   00112332211    23456778899


Q ss_pred             CEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       116 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      |+||++|+.....  .....+.+..|+....++++..++..  ..+|++|.
T Consensus        88 d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         88 DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            9999999854211  12223456678888888888887664  35665553

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.30  E-value=1.4e-05  Score=77.78  Aligned_cols=176  Identities=15%  Similarity=0.041  Sum_probs=99.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHH-HHHhcCCCCCeEEE-EeCCCcHHhhhCC--CCEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT-ADISHMDTNAVVRG-FLGQQQLEDALTG--MDIV  118 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~-~dl~~~~~~~~v~~-~~~t~d~~~al~~--aDiV  118 (358)
                      .+.++|.|+||+|++|++++..|++.|.  +|+.+|++... ... ..+........+.. .....++.+++++  .|+|
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   79 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIV   79 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence            4567999999999999999999999887  88889876521 111 11211100001111 1111234455554  5999


Q ss_pred             EEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccHHHHHHHHHHhCCCCCCcEEEeeecc
Q 018265          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (358)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t~~~~~~~~~~~~~p~~kviG~t~ld  195 (358)
                      |++++.+...  .......+..|+.....+++.+.+.+....++++|.. +........ .+......++...+|.+...
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~-~~~e~~~~~p~~~Y~~sK~~  158 (349)
T TIGR02622        80 FHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVW-GYRETDPLGGHDPYSSSKAC  158 (349)
T ss_pred             EECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCC-CCccCCCCCCCCcchhHHHH
Confidence            9999854221  1223456788999999999998776533356665542 110000000 00011123445678887766


Q ss_pred             HHHHHHHHHHHh-------CCCCCCCc-eEEEEec
Q 018265          196 VVRANTFVAEVL-------GLDPREVD-VPVVGGH  222 (358)
Q Consensus       196 s~R~~~~lA~~l-------~v~~~~v~-~~v~G~h  222 (358)
                      ..++...+++.+       +++...++ +.++|..
T Consensus       159 ~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       159 AELVIASYRSSFFGVANFHGIKIASARAGNVIGGG  193 (349)
T ss_pred             HHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence            666666666655       44444443 4577753

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.28  E-value=1e-06  Score=79.48  Aligned_cols=122  Identities=19%  Similarity=0.327  Sum_probs=85.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-----hhHHHHHhcCCC-----------------CCeEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMDT-----------------NAVVRG  101 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~-----~g~~~dl~~~~~-----------------~~~v~~  101 (358)
                      +...|+|+|| |.+|+.+|...+..|+  .+.|+|.++ .     ++....+.+...                 -.+++ 
T Consensus        10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~-   85 (298)
T KOG2304|consen   10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK-   85 (298)
T ss_pred             cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH-
Confidence            3458999998 9999999999999999  999999987 1     222222222110                 01222 


Q ss_pred             EeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       102 ~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        .++|.+.++.|||+||..              .-+|+.+.+++.+.+.+.|+..- |..||...+.-   +.. ....
T Consensus        86 --~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~-il~tNTSSl~l---t~i-a~~~  144 (298)
T KOG2304|consen   86 --TSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST-ILATNTSSLSL---TDI-ASAT  144 (298)
T ss_pred             --HcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce-EEeecccceeH---HHH-Hhhc
Confidence              246888999999998876              48899999999999999996432 44688887543   111 1222


Q ss_pred             CCCCCcEEEee
Q 018265          182 TYDPKRLLGVT  192 (358)
Q Consensus       182 ~~p~~kviG~t  192 (358)
                       -.+.++.|+.
T Consensus       145 -~~~srf~GlH  154 (298)
T KOG2304|consen  145 -QRPSRFAGLH  154 (298)
T ss_pred             -cChhhhceee
Confidence             3467899984

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.27  E-value=3.1e-06  Score=73.34  Aligned_cols=94  Identities=26%  Similarity=0.334  Sum_probs=62.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--CC------CeEEEEeCCCcHHhhhCCCCEEE
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--TN------AVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~~------~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      ||+|+|| |..|.++|..|..++.  ++.|+++++.....+.-.+..  ..      ..+..   ++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence            8999998 9999999999999996  999999875221222222221  11      12332   579999999999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  163 (358)
                      ++.  |              ....+++++++..+- ++..+++++
T Consensus        75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            974  2              344567788888776 445555544

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.24  E-value=1.9e-05  Score=74.86  Aligned_cols=118  Identities=21%  Similarity=0.374  Sum_probs=77.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhH-----H-HHHhcCC-C--------CCeEEEEeCCCcH
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----T-ADISHMD-T--------NAVVRGFLGQQQL  108 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~-----~-~dl~~~~-~--------~~~v~~~~~t~d~  108 (358)
                      .||+|||+ |.+|..++..++..|.  +++++|++..   .+.     . .++.+.. .        ...++.   ++|+
T Consensus         4 ~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~~   77 (282)
T PRK05808          4 QKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTDL   77 (282)
T ss_pred             cEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence            48999998 9999999999999987  9999998861   111     0 1111110 0        013332   4576


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                       +++++||+||+++              ..+..+.+++.+.+.++++ +++|  +||-..+-...+    ....+. +.+
T Consensus        78 -~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l----a~~~~~-~~r  135 (282)
T PRK05808         78 -DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL----AAATKR-PDK  135 (282)
T ss_pred             -HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HHhhCC-Ccc
Confidence             5689999999984              3456777888888988885 6644  566666554222    232233 357


Q ss_pred             EEEee
Q 018265          188 LLGVT  192 (358)
Q Consensus       188 viG~t  192 (358)
                      ++|+.
T Consensus       136 ~ig~h  140 (282)
T PRK05808        136 VIGMH  140 (282)
T ss_pred             eEEee
Confidence            87774

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.22  E-value=1e-05  Score=77.07  Aligned_cols=118  Identities=14%  Similarity=0.257  Sum_probs=74.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHH--------Hh---cCCC---------CCeEEEEeCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD--------IS---HMDT---------NAVVRGFLGQ  105 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~d--------l~---~~~~---------~~~v~~~~~t  105 (358)
                      .||+|||+ |.+|..++..++..|.  +|+++|+++ ......+        +.   +...         ..++.   .+
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~---~~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR---TS   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE---ee
Confidence            48999998 9999999999999988  999999986 1111111        11   1000         01122   23


Q ss_pred             CcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      +|+ +++++||+||.+.              ..+..+.+++.+.+.++++ ++++  +||...+...-   . ..... .
T Consensus        78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~---l-a~~~~-~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAE---I-ATALE-R  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHH---H-HhhcC-C
Confidence            566 6789999999985              2235667777788888874 5644  46655544321   1 12212 2


Q ss_pred             CCcEEEee
Q 018265          185 PKRLLGVT  192 (358)
Q Consensus       185 ~~kviG~t  192 (358)
                      +.|++|+.
T Consensus       136 ~~r~ig~h  143 (291)
T PRK06035        136 KDRFIGMH  143 (291)
T ss_pred             cccEEEEe
Confidence            46788874

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.20  E-value=1.5e-05  Score=81.01  Aligned_cols=120  Identities=15%  Similarity=0.159  Sum_probs=77.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC---------------CCCeEEEEeCCCcHHh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------------TNAVVRGFLGQQQLED  110 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~---------------~~~~v~~~~~t~d~~~  110 (358)
                      +|||+|||+ |.||..+|..|+..|...+++.+|+++.+  +..|....               ....++   .++|+++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~---~t~~~~~   74 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLF---FSTDVEK   74 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEE---EEcCHHH
Confidence            489999998 99999999999988643489999998611  11121110               001132   3567888


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe--cCCCCccHHH
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPI  172 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~t~~  172 (358)
                      ++++||++|++.+.|...+-...+ -.-++..+.+.++.|.++.++..+|+.  |-|..+.-.+
T Consensus        75 ~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~  137 (473)
T PLN02353         75 HVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI  137 (473)
T ss_pred             HHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence            999999999999988743210000 012345567777777776654444443  6788765444

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.16  E-value=2.9e-05  Score=74.49  Aligned_cols=120  Identities=18%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh--HHHHHhcCCCCCeEEEE----eCCCcHHhhhCCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTNAVVRGF----LGQQQLEDALTGMD  116 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g--~~~dl~~~~~~~~v~~~----~~t~d~~~al~~aD  116 (358)
                      ..++|+|+||+|+||+.++..|+++|+  +|+--=++.  .+.  +..+|....  .+++.+    .....+..|+++||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            457999999999999999999999998  555444433  222  344555332  122222    22356789999999


Q ss_pred             EEEEcCCCCCCCCC-CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcc
Q 018265          117 IVIIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (358)
Q Consensus       117 iVIi~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  169 (358)
                      .|+++|.-..-... .-.+++.-.++....+.+.+.++. ..+=+++|+....+
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv  133 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAV  133 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHh
Confidence            99999874322222 244678889999999999999886 44435566665443

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.15  E-value=2.5e-05  Score=78.90  Aligned_cols=170  Identities=13%  Similarity=0.007  Sum_probs=98.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +.|||.|+||+|+||++++..|+..|.  +|+.+|...  ......+.  . ..+.++.+... -...++.++|+||++|
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~--~-~~~~~~~i~~D-~~~~~l~~~D~ViHlA  191 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHH--F-SNPNFELIRHD-VVEPILLEVDQIYHLA  191 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhh--c-cCCceEEEECC-ccChhhcCCCEEEEee
Confidence            348999999999999999999999887  889888643  11111111  1 11223332211 1234578999999999


Q ss_pred             CCCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccH--HHHHHHHHHh-CCCCCCcEEEeeeccH
Q 018265          123 GVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKKV-GTYDPKRLLGVTMLDV  196 (358)
Q Consensus       123 g~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t--~~~~~~~~~~-~~~p~~kviG~t~lds  196 (358)
                      +...  ....+....+..|+....++++.+++..  ..+|+++.- +.--.  ....+..+.. .-..+...++.+.+..
T Consensus       192 a~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~a  269 (442)
T PLN02206        192 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTA  269 (442)
T ss_pred             eecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHH
Confidence            7532  1122345677899999999999998765  356655432 11000  0000000000 0011134566666666


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          197 VRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       197 ~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      .++...+.+..+++..-++ ..++|.+
T Consensus       270 E~~~~~y~~~~g~~~~ilR~~~vyGp~  296 (442)
T PLN02206        270 ETLTMDYHRGANVEVRIARIFNTYGPR  296 (442)
T ss_pred             HHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            6665556666776655544 3477754

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.14  E-value=4e-05  Score=72.65  Aligned_cols=167  Identities=15%  Similarity=0.051  Sum_probs=98.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe----CCCcHHhhhCC--CCEE
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL----GQQQLEDALTG--MDIV  118 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~--aDiV  118 (358)
                      ||.|+||+|++|++++..|+..+...+++++|....   .....++...   +.+..+.    ...++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            589999999999999999988763338888886431   1111122211   1222221    12345566777  8999


Q ss_pred             EEcCCCCCC--CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC-----CccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          119 IIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----NSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       119 Ii~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-----d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      |++++....  ........+..|+.....+++.+.+...+..++.+|...     .....+     .......+...+|.
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~  152 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA  152 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence            999875321  112334567889999999999998765555666554311     000000     01112334456777


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      +.....++...+++..+++..-++ ..++|..
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            766666666667777777665554 3467753

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.13  E-value=8.4e-06  Score=80.33  Aligned_cols=169  Identities=15%  Similarity=0.085  Sum_probs=99.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE--EeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~--~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +.|||+|+||+|+||++++..|...|.  +|+.+|+.... .   +........+..  .....++..+++++|+||++|
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~---~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-H---MSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-c---cccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            557999999999999999999999887  99999975310 0   000000001110  000123445678999999998


Q ss_pred             CCCCCCC---CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccH-------HHHHHHHHHhCCCCCCcEEEe
Q 018265          123 GVPRKPG---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV-------PIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       123 g~~~~~g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t-------~~~~~~~~~~~~~p~~kviG~  191 (358)
                      +.....+   ......+..|+.....+++.+++...+. +|++|.. +.--.       .+ .+  .....+.+...+|.
T Consensus        94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~-~V~~SS~~vYg~~~~~~~~~~~-~E--~~~~p~~p~s~Yg~  169 (370)
T PLN02695         94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-FFYASSACIYPEFKQLETNVSL-KE--SDAWPAEPQDAYGL  169 (370)
T ss_pred             cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCE-EEEeCchhhcCCccccCcCCCc-Cc--ccCCCCCCCCHHHH
Confidence            7432111   1123346789999999999998776543 4444432 11000       00 00  00001334556777


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      +.....++...+++..|++..-++ ..++|.++
T Consensus       170 sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        170 EKLATEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            766676666667777888766664 45888754

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.13  E-value=5.9e-05  Score=72.11  Aligned_cols=114  Identities=18%  Similarity=0.111  Sum_probs=73.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCC-CCCeEEEEe----CCCcHHhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMD-TNAVVRGFL----GQQQLEDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~-~~~~v~~~~----~t~d~~~al~~aDiVI  119 (358)
                      .+||.|+||+|++|++++..|+..|.  +++.++++... .....+.... ..+.+..+.    ...++.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            36899999999999999999999987  88888776521 1112221110 011222221    1234667889999999


Q ss_pred             EcCCCCCCC-CCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEe
Q 018265          120 IPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLI  162 (358)
Q Consensus       120 i~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~  162 (358)
                      ++|+..... .....+.+..|+.....+.+.+.+. ... .++++
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~  125 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT  125 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence            998753221 1222356788999999999998775 333 44544

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.08  E-value=1.6e-05  Score=81.49  Aligned_cols=121  Identities=22%  Similarity=0.297  Sum_probs=78.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--H---H-HHhcCCC---------CCeEEEEeCCCc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T---A-DISHMDT---------NAVVRGFLGQQQ  107 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~---~-dl~~~~~---------~~~v~~~~~t~d  107 (358)
                      -.||+|||+ |.+|+.+|..++..|+  +++++|++.  + .+.  .   + .+.....         ..+++.   ++|
T Consensus         5 ~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~   78 (503)
T TIGR02279         5 VVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VTD   78 (503)
T ss_pred             ccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eCC
Confidence            358999998 9999999999999998  999999986  1 111  0   0 1111100         122333   457


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      + +++++||+||.+.              .++..+.+++...+.+++|... |+.||...+-..-++   .. ... +.+
T Consensus        79 ~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i~~iA---~~-~~~-p~r  137 (503)
T TIGR02279        79 L-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT-IIASNTSSLSITAIA---AG-LAR-PER  137 (503)
T ss_pred             H-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCHHHHH---Hh-cCc-ccc
Confidence            7 5689999999984              4467778888888998885433 346777776543211   22 222 456


Q ss_pred             EEEeee
Q 018265          188 LLGVTM  193 (358)
Q Consensus       188 viG~t~  193 (358)
                      ++|+..
T Consensus       138 ~~G~HF  143 (503)
T TIGR02279       138 VAGLHF  143 (503)
T ss_pred             eEEEec
Confidence            777643

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.07  E-value=2.1e-05  Score=74.96  Aligned_cols=123  Identities=20%  Similarity=0.343  Sum_probs=73.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHH-----HHh----cCCC--------CCeEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA-----DIS----HMDT--------NAVVRGFLGQQ  106 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~-----dl~----~~~~--------~~~v~~~~~t~  106 (358)
                      +.+||+|||+ |.+|..++..++..|.  +|+++|++.. .....     .+.    ....        ...++.   ++
T Consensus         3 ~~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~   76 (292)
T PRK07530          3 AIKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---AT   76 (292)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eC
Confidence            3469999998 9999999999999988  9999999761 11111     110    1110        012332   35


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |+ +++++||+||++..              .+..+.+.+.+.+.+++ |++++  +||-..+-..   +. ..... .+
T Consensus        77 ~~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s---~l-a~~~~-~~  134 (292)
T PRK07530         77 DL-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSISIT---RL-ASATD-RP  134 (292)
T ss_pred             CH-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHH---HH-HhhcC-Cc
Confidence            66 56899999999842              12344455666777776 56644  3555554421   11 22222 24


Q ss_pred             CcEEEeeecc
Q 018265          186 KRLLGVTMLD  195 (358)
Q Consensus       186 ~kviG~t~ld  195 (358)
                      .+++|+..++
T Consensus       135 ~r~~g~h~~~  144 (292)
T PRK07530        135 ERFIGIHFMN  144 (292)
T ss_pred             ccEEEeeccC
Confidence            5677764433

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=98.05  E-value=7.9e-05  Score=70.40  Aligned_cols=163  Identities=17%  Similarity=0.113  Sum_probs=107.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCC-CCeEEEEeCCCcHHhhh--CCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDT-NAVVRGFLGQQQLEDAL--TGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al--~~aDiVIi~a  122 (358)
                      |+|.|+|++|+|||+.+..|++.|.  +++.+|... -...+.+-....+ ..+++.   ..-+.+.|  ..-|.||+.|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEECc
Confidence            6899999999999999999999998  999999865 1112221111111 011111   01122222  4789999998


Q ss_pred             CCCCCCCC---CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEE-----ecCCCCccHHHHHHHHHHhCCCCCCcEEEeeec
Q 018265          123 GVPRKPGM---TRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-----ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (358)
Q Consensus       123 g~~~~~g~---~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-----~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~l  194 (358)
                      +...- |+   .-+.+...|+--...+.+.+.+++.+-+|+-     +.+|..+-  + +    +..-..+.+.+|-|.|
T Consensus        76 a~~~V-gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~P--I-~----E~~~~~p~NPYG~sKl  147 (329)
T COG1087          76 ASISV-GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSP--I-S----ETSPLAPINPYGRSKL  147 (329)
T ss_pred             ccccc-chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcc--c-C----CCCCCCCCCcchhHHH
Confidence            75432 22   2467889999999999999999997765543     23555421  1 1    2223447789999999


Q ss_pred             cHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          195 DVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       195 ds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      -..++.+.+++..+.+..-++ +-+.|-|
T Consensus       148 m~E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         148 MSEEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             HHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence            999999999999886555443 3466644

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.03  E-value=1.8e-05  Score=81.15  Aligned_cols=121  Identities=21%  Similarity=0.300  Sum_probs=77.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hh--HHHH----Hh-cCC--------CCCeEEEEeCCCcH
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTAD----IS-HMD--------TNAVVRGFLGQQQL  108 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g--~~~d----l~-~~~--------~~~~v~~~~~t~d~  108 (358)
                      .||+|||+ |.+|+.+|..++..|+  +|+++|++. .  .+  ...+    +. ...        ...+++.   ++|+
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~~   81 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEAL   81 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence            48999998 9999999999999998  999999986 1  11  1111    11 110        0112443   3566


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                       +++++||+||.+.              .++..+.+.+...+.+.+ |++++  +||-..+-..-+    ...... ++|
T Consensus        82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~l----a~~~~~-p~r  139 (507)
T PRK08268         82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAI----AAALKH-PER  139 (507)
T ss_pred             -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcCC-ccc
Confidence             5688999999984              446677777778898887 56643  456555443211    222232 467


Q ss_pred             EEEeeecc
Q 018265          188 LLGVTMLD  195 (358)
Q Consensus       188 viG~t~ld  195 (358)
                      ++|+..++
T Consensus       140 ~~G~hff~  147 (507)
T PRK08268        140 VAGLHFFN  147 (507)
T ss_pred             EEEEeecC
Confidence            77774333

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.03  E-value=4.1e-05  Score=73.61  Aligned_cols=103  Identities=23%  Similarity=0.269  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHH--------HHhcCCC---------CCeEEEEeCCCc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------NAVVRGFLGQQQ  107 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~--------dl~~~~~---------~~~v~~~~~t~d  107 (358)
                      .+||+|||+ |.+|++++..|+..|+  +|+++|+++. .....        .+.....         ..+++.   ++|
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence            358999998 9999999999999988  9999999761 11110        1211110         012332   467


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcc
Q 018265          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (358)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  169 (358)
                      +.+++++||+|+.+..              .+....+.+...+.+.+++..++ .||-....
T Consensus        76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~  122 (308)
T PRK06129         76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSALL  122 (308)
T ss_pred             HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCCC
Confidence            8888999999999842              12344444555676666544444 35544333

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.03  E-value=4.2e-05  Score=73.51  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=70.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      |||.|+||+|++|++++..|+..|.  +|+.++++....  ..+.+... ..+.. .....++.++++++|+||++++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~v-~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWGA-ELVYGDLSLPETLPPSFKGVTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcCC-EEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence            6999999999999999999999887  899888764211  11111110 11111 111235678899999999987532


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ..   ...++...|......+++.+++.+-+ .+|.+|
T Consensus        76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         76 PS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            11   12234566788888899988887644 455544

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.03  E-value=9.3e-05  Score=71.96  Aligned_cols=176  Identities=15%  Similarity=0.078  Sum_probs=100.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEE----eCCCcHHhhhCC--CCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTG--MDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~----~~t~d~~~al~~--aDiVIi  120 (358)
                      +||.|+||+|++|++++..|+..+. ..++++|.....+....+........+...    ....++++++++  +|+||+
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            5899999999999999999998875 246677764321211222211001112111    111234556664  899999


Q ss_pred             cCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhC-------CC-eEEEEecCCC-CccHHHHHHHHHHhCCCCCCcEE
Q 018265          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNPV-NSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       121 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP~-d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      +||.....  .......+..|+.....+++.+.++.       +. ..++.+|... .-...-....+.......+...+
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~s~Y  160 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY  160 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCCChh
Confidence            99864321  11235567889999999999987642       12 2455554321 10000000000011123345567


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      |.+.+...++...+++.++++..-++ ..++|.+.
T Consensus       161 ~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~  195 (355)
T PRK10217        161 SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH  195 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence            88877777777778888887765554 56788653

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.03  E-value=3.1e-05  Score=73.38  Aligned_cols=167  Identities=17%  Similarity=0.112  Sum_probs=100.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCC-CEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGM-DIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~a-DiVIi~ag~  124 (358)
                      |+|.|+||+|++|++++..|++.|.  +|+.+|.........+ .+... ...+..   .....+++++. |.||++++.
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~   74 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQ   74 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEcccc
Confidence            3599999999999999999999887  9999997552111111 11100 001110   12234556777 999999886


Q ss_pred             CCCCCCCH---HhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccH-H----HHHHHHHHhCCCCCCcEEEeeeccH
Q 018265          125 PRKPGMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV-P----IAAEVFKKVGTYDPKRLLGVTMLDV  196 (358)
Q Consensus       125 ~~~~g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t-~----~~~~~~~~~~~~p~~kviG~t~lds  196 (358)
                      ...++..+   .++...|+...++++++.++ +.-.+++. +......- .    .+.+-.  .+..| ...+|.+.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~-~ss~~~~~~~~~~~~~~E~~--~~~~p-~~~Yg~sK~~~  149 (314)
T COG0451          75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVF-ASSVSVVYGDPPPLPIDEDL--GPPRP-LNPYGVSKLAA  149 (314)
T ss_pred             CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEE-eCCCceECCCCCCCCccccc--CCCCC-CCHHHHHHHHH
Confidence            65444322   34788999999999999998 33334444 32221110 0    001100  11122 22577777777


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eEEEEecCC
Q 018265          197 VRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (358)
Q Consensus       197 ~R~~~~lA~~l~v~~~~v~-~~v~G~hg~  224 (358)
                      .+.....++..|++..-++ ..++|....
T Consensus       150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  178 (314)
T COG0451         150 EQLLRAYARLYGLPVVILRPFNVYGPGDK  178 (314)
T ss_pred             HHHHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence            7776666666778877776 468886544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.02  E-value=2e-05  Score=75.01  Aligned_cols=99  Identities=20%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHH----HHHh-----cCCC--------CCeEEEEeCCCcH
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT----ADIS-----HMDT--------NAVVRGFLGQQQL  108 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~----~dl~-----~~~~--------~~~v~~~~~t~d~  108 (358)
                      .||+|||+ |.+|..+|..++..|.  +|+++|+++. ....    .++.     ....        ...++.   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            48999998 9999999999999887  9999999861 1111    0110     0000        012332   4577


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  167 (358)
                      ++++++||+||.+..              .+..+.+.+...+.+++ |++++  ++|...
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt  119 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTST  119 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence            889999999999842              22445555666677776 45543  344444

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.02  E-value=6.5e-05  Score=75.89  Aligned_cols=178  Identities=14%  Similarity=0.121  Sum_probs=103.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hh------------HHHHH---hcCCCCCeEEEEeC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG------------VTADI---SHMDTNAVVRGFLG  104 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g------------~~~dl---~~~~~~~~v~~~~~  104 (358)
                      ..+++||.|+||+|+||++++..|+..|.  +|+++|...  . ..            ....+   .+.. ...++.+.+
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~  120 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVG  120 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEEC
Confidence            34457999999999999999999999887  899998532  0 00            00001   1000 011222211


Q ss_pred             ----CCcHHhhhC--CCCEEEEcCCCCCCC-CC-C---HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec------CCCC
Q 018265          105 ----QQQLEDALT--GMDIVIIPAGVPRKP-GM-T---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS------NPVN  167 (358)
Q Consensus       105 ----t~d~~~al~--~aDiVIi~ag~~~~~-g~-~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t------NP~d  167 (358)
                          ..+++++++  ++|+||++|+....+ .. +   ....+..|+.....+++.+++++.+..++.++      +|-.
T Consensus       121 Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~  200 (442)
T PLN02572        121 DICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNI  200 (442)
T ss_pred             CCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCC
Confidence                123445565  489999998653211 11 1   12335679999999999999887655555443      2111


Q ss_pred             ccH--HH-HHHHHHHh---CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          168 STV--PI-AAEVFKKV---GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       168 ~~t--~~-~~~~~~~~---~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      .+.  ++ ..+.....   .-..+...+|.+.+....+...+++.+|++..-++ +.|+|.+.
T Consensus       201 ~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~  263 (442)
T PLN02572        201 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT  263 (442)
T ss_pred             CCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence            000  00 00000000   01234568999887777777788888888776664 56888754

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.02  E-value=0.00013  Score=77.35  Aligned_cols=181  Identities=14%  Similarity=0.016  Sum_probs=101.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhh--CCCC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL--TGMD  116 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al--~~aD  116 (358)
                      +-+++||.|+||+|+||++++..|+..+...+|+.+|..........+......+.++.+.+. +|   ...++  .++|
T Consensus         3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D   82 (668)
T PLN02260          3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID   82 (668)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence            445689999999999999999999887433388989864311111111111011223332211 22   22222  6899


Q ss_pred             EEEEcCCCCCCCC--CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccHHHHH-HHHHHhCCCCCCcEEEee
Q 018265          117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAA-EVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       117 iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t~~~~-~~~~~~~~~p~~kviG~t  192 (358)
                      +||++|+......  ....++...|+.....+++.+++.+.-..+|.+|.- +.-...--. .-........+...+|.+
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~s  162 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSAT  162 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHH
Confidence            9999998643211  123456688999999999999887533355555431 000000000 000000112234567777


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      .+...++-..+++..+++..-++ ..|+|.+.
T Consensus       163 K~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~  194 (668)
T PLN02260        163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ  194 (668)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence            77777776666777777665554 56788654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.99  E-value=4.3e-05  Score=73.40  Aligned_cols=101  Identities=22%  Similarity=0.323  Sum_probs=62.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHH-Hh---cC----C----CCCeEEEEeCCCcHHhhhC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD-IS---HM----D----TNAVVRGFLGQQQLEDALT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~d-l~---~~----~----~~~~v~~~~~t~d~~~al~  113 (358)
                      +||+|||+ |.+|..++..|+..|.  +|+++|.+. ......+ +.   ..    .    ....++   .++|++++++
T Consensus         5 ~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~   78 (311)
T PRK06130          5 QNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIR---MEAGLAAAVS   78 (311)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceE---EeCCHHHHhc
Confidence            58999998 9999999999998887  999999876 1111111 10   00    0    001122   2357777899


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCcc
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNST  169 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~  169 (358)
                      +||+||++.-              .......++...+..+++ +++|  +||...+-
T Consensus        79 ~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~  119 (311)
T PRK06130         79 GADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLP  119 (311)
T ss_pred             cCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCC
Confidence            9999999841              123445555566666664 5543  35555443

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=97.98  E-value=6.2e-05  Score=73.17  Aligned_cols=161  Identities=14%  Similarity=0.088  Sum_probs=95.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-----CcHHhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~al~~aDiVI  119 (358)
                      +|||.|+||+|++|++++..|+.. +.  +|+.+|+...  ...++...   ..+..+.+.     .++.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            369999999999999999999875 55  8999986431  11122111   122222111     12345678999999


Q ss_pred             EcCCCCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC------C-ccHHHHHHHHHHhCC------CC
Q 018265          120 IPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------N-STVPIAAEVFKKVGT------YD  184 (358)
Q Consensus       120 i~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~------d-~~t~~~~~~~~~~~~------~p  184 (358)
                      ++++...  ............|+....++++..++..  ..+|.+|...      + .+.    +   ..+.      .+
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~~~~~~~~----e---e~~~~~~~~~~~  144 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCPDEEFD----P---EASPLVYGPINK  144 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeccCCCcCcC----c---cccccccCcCCC
Confidence            9987532  2222334456778888889999888764  4566554321      1 010    0   0000      01


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      +...+|.+.....+....+++..|++..-++ +.++|.+
T Consensus       145 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~  183 (347)
T PRK11908        145 PRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG  183 (347)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence            2335666665555555666677787766665 4577854

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=97.96  E-value=7.3e-05  Score=71.33  Aligned_cols=103  Identities=24%  Similarity=0.330  Sum_probs=64.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHH--------HHHhcCCC--C----CeEEEEeCCCcHHhh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--------ADISHMDT--N----AVVRGFLGQQQLEDA  111 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~--------~dl~~~~~--~----~~v~~~~~t~d~~~a  111 (358)
                      .||+|||+ |.+|+.++..++..|.  +|+++|.+... ...        .++.+...  .    ..+.....++++ ++
T Consensus         5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~   80 (295)
T PLN02545          5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EE   80 (295)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HH
Confidence            58999998 9999999999999887  99999987611 111        01211100  0    011111123455 67


Q ss_pred             hCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCcc
Q 018265          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~  169 (358)
                      +++||+||.+.              .++..+...+...+.+++ |+++|  +||-..+-
T Consensus        81 ~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~  123 (295)
T PLN02545         81 LRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS  123 (295)
T ss_pred             hCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence            89999999984              334566666667777766 56643  45555543

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=97.96  E-value=8.4e-05  Score=71.80  Aligned_cols=114  Identities=17%  Similarity=0.223  Sum_probs=75.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHHHHhcCCCCCeEEEEe----CCCcHHhhhCCCCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL----GQQQLEDALTGMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiV  118 (358)
                      +.++|.|+||+|++|++++..|+..+...+|+++|.+....  ...++..    ..+..+.    ...++.+++++.|+|
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~V   78 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYV   78 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEE
Confidence            34689999999999999999998875333889998765221  1111211    1222211    123456678899999


Q ss_pred             EEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      |++||....+  ..+..+.+..|+.....+++.+.+.... .+|++|
T Consensus        79 ih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        79 VHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             EECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            9999864322  2234567889999999999999876533 455554

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=97.96  E-value=9.5e-05  Score=71.83  Aligned_cols=176  Identities=15%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEE----eCCCcHHhhhC--CCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALT--GMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~----~~t~d~~~al~--~aDiVIi  120 (358)
                      |||.|+||+|++|++++..|+..|.. .++.+|.....+....+........+..+    ....++.++++  ++|+||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCC-eEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            68999999999999999999987752 46667754311111111111001112111    11124455565  4899999


Q ss_pred             cCCCCCC--CCCCHHhHHHHHHHHHHHHHHHHHhhC-------CC-eEEEEecCC-CCccHHHHH--------HHHHHhC
Q 018265          121 PAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNP-VNSTVPIAA--------EVFKKVG  181 (358)
Q Consensus       121 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP-~d~~t~~~~--------~~~~~~~  181 (358)
                      +|+....  ......+.+..|+.....+++.+.++.       .. ..++.+|.. +.-....--        ..+....
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~  159 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETT  159 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccC
Confidence            9986421  112235678899999999999998752       12 245544332 111000000        0000111


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      .+.+...+|.+.....++-..+++.+|++..-++ ..|+|.+.
T Consensus       160 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~  202 (352)
T PRK10084        160 AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH  202 (352)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence            2345567888877777777778888888765554 45788653

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.95  E-value=7.1e-05  Score=76.72  Aligned_cols=103  Identities=14%  Similarity=0.149  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHH--------HhcC---CC--CCeEEEEeCCCcHHhhh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------ISHM---DT--NAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~d--------l~~~---~~--~~~v~~~~~t~d~~~al  112 (358)
                      +||+|||+ |.+|+.+|..++..|+  +|.++|++... ....+        +...   ..  ...++.   ++|+++++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~   78 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV   78 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence            58999998 9999999999999998  99999998611 11101        1100   00  011332   45788899


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccH
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t  170 (358)
                      ++||+||.+.              ..+..+.+++...+.+++|... ++.||...+..
T Consensus        79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~  121 (495)
T PRK07531         79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP  121 (495)
T ss_pred             cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence            9999999874              2334556666667777775432 34677666553

>PLN02214 cinnamoyl-CoA reductase

Probab=97.93  E-value=0.00019  Score=69.86  Aligned_cols=170  Identities=16%  Similarity=0.029  Sum_probs=98.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCCCCCeEEEEe----CCCcHHhhhCCCCEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIV  118 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiV  118 (358)
                      .++|.|+||+|++|++++..|+..|.  +|+.++++...   .....+...  ...+..+.    ...++.++++++|+|
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            45899999999999999999999887  88888775421   111122211  11222211    123566788999999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcc--H-----HHHHHHHHHhC--CCCCCcEE
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST--V-----PIAAEVFKKVG--TYDPKRLL  189 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~--t-----~~~~~~~~~~~--~~p~~kvi  189 (358)
                      |++|+...   ....+.+..|+.....+.+.+.+...+ .++++|.-..+-  .     ....+-.+...  -..+...+
T Consensus        86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y  161 (342)
T PLN02214         86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY  161 (342)
T ss_pred             EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence            99998542   234556788999999999999876544 444443321110  0     00001000000  00122345


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      |.+.....++...+++..|++..-++ ..|+|.+.
T Consensus       162 ~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~  196 (342)
T PLN02214        162 CYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPL  196 (342)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence            55555555666666677777665554 56888653

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.93  E-value=9.5e-05  Score=66.61  Aligned_cols=97  Identities=20%  Similarity=0.308  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      +|+++|+|+ |++|+.++..+...++  |+.+-..+..+.....-...  .+.+..   . ..++|.+.||+||++.  |
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~---~-~~~dA~~~aDVVvLAV--P   69 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITG---G-SNEDAAALADVVVLAV--P   69 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--cccccc---C-ChHHHHhcCCEEEEec--c
Confidence            578999998 9999999999999997  88888666522222211111  233443   2 2468999999999984  3


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                                    .+-+.++.+.++..-.+-+||-.|||.+
T Consensus        70 --------------~~a~~~v~~~l~~~~~~KIvID~tnp~~   97 (211)
T COG2085          70 --------------FEAIPDVLAELRDALGGKIVIDATNPIE   97 (211)
T ss_pred             --------------HHHHHhHHHHHHHHhCCeEEEecCCCcc
Confidence                          2333444444444323667888899964

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.93  E-value=0.00011  Score=72.17  Aligned_cols=108  Identities=16%  Similarity=0.268  Sum_probs=73.4

Q ss_pred             cccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCc---hhHHHHHhcCC----C--
Q 018265           30 SSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHMD----T--   95 (358)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~~---~g~~~dl~~~~----~--   95 (358)
                      +++|.|..|++.      ||+|||+ |.-|.++|..|..++.     ..++.|+.+++.   ...+.++++..    +  
T Consensus         1 ~~~~~~~~~~~~------ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp   73 (365)
T PTZ00345          1 RSLFQKLRCGPL------KVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLP   73 (365)
T ss_pred             CcchhhcccCCC------eEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCC
Confidence            468999989886      9999998 9999999999988762     238888887762   12344444321    1  


Q ss_pred             ----CCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHh--hC-CCeEEEEec
Q 018265           96 ----NAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK--CC-PKAIVNLIS  163 (358)
Q Consensus        96 ----~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~--~~-p~a~viv~t  163 (358)
                          ...+..   ++|+.+++++||+||++.  |              ...+++++++++.  +- ++..+|.++
T Consensus        74 ~~~Lp~ni~~---tsdl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         74 GIKLPDNIVA---VSDLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             CCcCCCceEE---ecCHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence                122333   468889999999999873  2              3456677777765  33 344555554

>PRK06194 hypothetical protein; Provisional

Probab=97.93  E-value=0.00036  Score=65.61  Aligned_cols=160  Identities=19%  Similarity=0.141  Sum_probs=92.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-----  113 (358)
                      +.++|.|+||+|++|++++..|+..|.  +|+++|.+.  ......++...  ...+..+.. -+   +++++++     
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~   80 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALER   80 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999887  899999865  22233333321  122322211 12   2333333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHH----HHHHHHhhCCC-----eEEEEecCCCCccHHHHHHH
Q 018265          114 --GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKT----LCEGIAKCCPK-----AIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~-----a~viv~tNP~d~~t~~~~~~  176 (358)
                        ..|+||+++|.....   ..+.   ...+..|+.....    +.+.+.+.+.+     +.+++++.-....       
T Consensus        81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------  153 (287)
T PRK06194         81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL-------  153 (287)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc-------
Confidence              469999999874321   1111   2234555554444    44445554432     5666655433211       


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                           +.|..-.++.+......+...++..++.....+++..+.
T Consensus       154 -----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~  192 (287)
T PRK06194        154 -----APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC  192 (287)
T ss_pred             -----CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence                 234445677766555667777788887666666655554

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=97.88  E-value=0.00022  Score=69.22  Aligned_cols=156  Identities=13%  Similarity=0.028  Sum_probs=92.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHh-cCC--CCCeEEEEeC----CCcHHhhhCC--
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADIS-HMD--TNAVVRGFLG----QQQLEDALTG--  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~-~~~--~~~~v~~~~~----t~d~~~al~~--  114 (358)
                      +||.|+||+|++|++++..|+..|.  +|+++|++..   ......+. +..  ....+..+.+    ...+.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999887  8999987641   11111111 000  0111222111    1234456664  


Q ss_pred             CCEEEEcCCCCCCC-C-CCHHhHHHHHHHHHHHHHHHHHhhC-CC-eEEEEecC------CCCccHHHHHHHHHHhCCCC
Q 018265          115 MDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCC-PK-AIVNLISN------PVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       115 aDiVIi~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~-p~-a~viv~tN------P~d~~t~~~~~~~~~~~~~p  184 (358)
                      .|+||++|+..... . ......+..|+.....+++.+.+.+ .+ ..++++|.      +.+..  +     .....+.
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~--~-----~E~~~~~  151 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIP--Q-----NETTPFY  151 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCC--C-----CCCCCCC
Confidence            59999999864321 1 1123344667778888999888765 22 34554432      11110  0     1111234


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCC
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDP  211 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~  211 (358)
                      +...+|.+.+...++...+++.+|++.
T Consensus       152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~  178 (343)
T TIGR01472       152 PRSPYAAAKLYAHWITVNYREAYGLFA  178 (343)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCce
Confidence            556788887777778777888777653

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.86  E-value=0.00046  Score=66.22  Aligned_cols=175  Identities=17%  Similarity=0.087  Sum_probs=99.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcC-CCCCeEEEE----eCCCcHHhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTNAVVRGF----LGQQQLEDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~-~~~~~v~~~----~~t~d~~~al~~aDiVI  119 (358)
                      .++|.|+||+|++|++++..|+..|.  +|++++++... .....+... .....+..+    ....+++++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            35899999999999999999999887  88777765421 111111111 101122222    11234567788999999


Q ss_pred             EcCCCCCCC-CC-CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHH---H-HHHHHHhCCC------CCCc
Q 018265          120 IPAGVPRKP-GM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI---A-AEVFKKVGTY------DPKR  187 (358)
Q Consensus       120 i~ag~~~~~-g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~---~-~~~~~~~~~~------p~~k  187 (358)
                      ++||..... .. .-...+..|+.....+.+.+.++.....|+++|.-.......   . ...+......      ++..
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~  162 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ  162 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence            999853211 11 224556789999999999888754223455544321110000   0 0000000001      1124


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      .+|.+.+...++...+++..|++..-++ +.++|..
T Consensus       163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~  198 (325)
T PLN02989        163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI  198 (325)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence            6777777777776777777777665554 5678854

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.86  E-value=0.00025  Score=71.02  Aligned_cols=119  Identities=25%  Similarity=0.325  Sum_probs=73.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----------------CCCeEEEEeCCCcHHh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLED  110 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~t~d~~~  110 (358)
                      |||+|||. |.+|..++..|+..|.  +|+.+|++...  ..++....                ....++.   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            68999998 9999999999999888  89999997521  12222210                0011332   357778


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCccHHHHHHHHHH
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~~~~~~~~  179 (358)
                      ++++||+||++...|.....      .-+...+.+.++.+.++. ++.++++. |-|......+...++.+
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            89999999999877654321      113344555555555543 45555444 45555554443333333

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.85  E-value=0.00039  Score=66.89  Aligned_cols=97  Identities=24%  Similarity=0.375  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC--C--CCCeEE---EEeCCCcHHhhhCCCCEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--TNAVVR---GFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~--~--~~~~v~---~~~~t~d~~~al~~aDiV  118 (358)
                      ++||+|+|+ |.-|.++|..|..++.  ++.|+.+++  ..+.++...  .  +.|.+.   ....++|+.+++++||+|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i   75 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII   75 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence            479999998 9999999999999986  999998875  333334332  1  112111   122468999999999999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  163 (358)
                      |+..  |              ...++++++++..+- ++..++.+|
T Consensus        76 v~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          76 VIAV--P--------------SQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             EEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEe
Confidence            9973  2              355666666665443 577777776

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=97.85  E-value=0.00014  Score=69.37  Aligned_cols=112  Identities=18%  Similarity=0.208  Sum_probs=73.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      |||.|+||+|++|++++..|+..+.  +++.+|++....  .++.+... ..+.. .....++.++++++|+||++++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence            5899999999999999999998887  899999865211  11111110 01111 111134567788999999998753


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      .............|+.....+++.+.+..-. .+++.|.
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  113 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSS  113 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEec
Confidence            2223345566788999999999988876433 4454443

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02778 3,5-epimerase/4-reductase

Probab=97.80  E-value=0.00035  Score=66.75  Aligned_cols=90  Identities=20%  Similarity=0.161  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh--CCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--~~aDiVIi~a  122 (358)
                      +.|||.|+||+|++|++++..|...|.  ++++...+.        .+.            ..+..++  .++|+||++|
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~--------~~~------------~~v~~~l~~~~~D~ViH~A   65 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRL--------ENR------------ASLEADIDAVKPTHVFNAA   65 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCcc--------CCH------------HHHHHHHHhcCCCEEEECC
Confidence            457999999999999999999998887  665442211        100            0011222  2789999999


Q ss_pred             CCCCCCC-----CCHHhHHHHHHHHHHHHHHHHHhhCCC
Q 018265          123 GVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK  156 (358)
Q Consensus       123 g~~~~~g-----~~r~~~~~~N~~i~~~i~~~i~~~~p~  156 (358)
                      +....+.     ....+....|+.....+++..++....
T Consensus        66 a~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         66 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             cccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8643221     234567889999999999999987543

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.80  E-value=0.00025  Score=69.14  Aligned_cols=173  Identities=17%  Similarity=0.071  Sum_probs=97.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH--HHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLG----QQQLEDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVI  119 (358)
                      .|||.|+||+|++|++++..|+..|.  +|++++.+.....  ..++..   ...+..+..    ..++.+++++.|+||
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            57999999999999999999999887  8888876542111  112211   122332211    123456678999999


Q ss_pred             EcCCCCCCC---C-CCH-----HhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccH-------HHHHHH----HH
Q 018265          120 IPAGVPRKP---G-MTR-----DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV-------PIAAEV----FK  178 (358)
Q Consensus       120 i~ag~~~~~---g-~~r-----~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t-------~~~~~~----~~  178 (358)
                      ++|+.....   . .+-     ...+..|+.....+++.+.++..-..++++|.- +....       ....+-    ..
T Consensus        85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~  164 (353)
T PLN02896         85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPID  164 (353)
T ss_pred             ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHH
Confidence            999864211   1 111     223344567788888888766322345554431 11000       000000    00


Q ss_pred             H-hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          179 K-VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       179 ~-~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      . ....++...+|.+.+...++...+++..|++..-++ ..|+|.+.
T Consensus       165 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  211 (353)
T PLN02896        165 HVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFL  211 (353)
T ss_pred             HhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCc
Confidence            0 000112236888877777777778888887665554 45778643

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.79  E-value=6.4e-05  Score=59.12  Aligned_cols=94  Identities=19%  Similarity=0.243  Sum_probs=59.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCC-CCcEEEEE-eCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      ||+|||+ |.+|++++..+...+ ...++.++ +++.  ....++.+.. .  +..+  +.+..+++++||+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence            7999998 999999999999887 23488866 7754  2222332211 1  1121  2256799999999999852  


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                        |            ..+.++++.+....++..+|-++||
T Consensus        71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence              1            2344555555434467778777775

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=97.78  E-value=0.00031  Score=67.67  Aligned_cols=114  Identities=20%  Similarity=0.210  Sum_probs=70.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC-CCCe-EEE-EeCCCcHHhhhC--CCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TNAV-VRG-FLGQQQLEDALT--GMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~-~~~~-v~~-~~~t~d~~~al~--~aDiVI  119 (358)
                      |||.|+||+|++|++++..|+..+.  +|+++|...  .......+.+.. .... +.. .....++.++++  ++|+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv   78 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI   78 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence            6899999999999999999998887  888888643  111111122111 0111 111 101112334454  689999


Q ss_pred             EcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++++.....  .....+.+..|+.....+++.+++.... .++++|
T Consensus        79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  123 (338)
T PRK10675         79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS  123 (338)
T ss_pred             ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            998764311  1234567788999999999998876433 344444

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.78  E-value=0.0003  Score=69.90  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC------------CCeEEEEeCCCcHHhhhCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------NAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~~al~~  114 (358)
                      |||+|||. |.||..+|..++. |+  +++.+|+++.  .+..+.....            ....+. ..++|.+++.++
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~--kv~~l~~g~~~~~e~~l~~~l~~~~~~l-~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPS--RVAMLNDRISPIVDKEIQQFLQSDKIHF-NATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHH--HHHHHHcCCCCCCCcCHHHHHHhCCCcE-EEecchhhhhcC
Confidence            69999998 9999999977774 66  9999999861  1111222100            011122 224566788899


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCCCCccHHH
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPI  172 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~t~~  172 (358)
                      ||+||++...|.......     -++..+.+.++.|.+..|+.+|++ .|-|....-.+
T Consensus        74 ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l  127 (388)
T PRK15057         74 ADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM  127 (388)
T ss_pred             CCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence            999999977663221111     133444455555554345554443 36777665444

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.77  E-value=0.00075  Score=64.74  Aligned_cols=175  Identities=16%  Similarity=0.082  Sum_probs=95.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcC-CCCCeEEEEe----CCCcHHhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTNAVVRGFL----GQQQLEDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~-~~~~~v~~~~----~t~d~~~al~~aDiVI  119 (358)
                      .++|.|+||+|++|++++..|+..|.  +|++...+. .......+... .....+..+.    ...++.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            35999999999999999999999887  777554443 21122222211 1111222221    1234667789999999


Q ss_pred             EcCCCCCC-CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcc-H-------HHHHHHHHHhCCC--CCCcE
Q 018265          120 IPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-V-------PIAAEVFKKVGTY--DPKRL  188 (358)
Q Consensus       120 i~ag~~~~-~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~-t-------~~~~~~~~~~~~~--p~~kv  188 (358)
                      ++|+.... ......+++..|+.....+.+.+.+...-..||++|.-.... .       ....+-.+..+.+  ++...
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~  162 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNW  162 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccc
Confidence            99985321 111223456778999999999887652112455443321110 0       0000000000000  11245


Q ss_pred             EEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          189 LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      ++.+.....++...+++..|++..-++ ..++|..
T Consensus       163 Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~  197 (322)
T PLN02986        163 YPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPL  197 (322)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCC
Confidence            666655555666666666777665554 4677753

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=97.75  E-value=0.00028  Score=68.35  Aligned_cols=162  Identities=15%  Similarity=0.071  Sum_probs=93.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcC--CCCCeEEEEe----CCCcHHhhh
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTNAVVRGFL----GQQQLEDAL  112 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~--~~~~~v~~~~----~t~d~~~al  112 (358)
                      ++.+.+||.|+||+|++|++++..|+..|.  +|+++|.+..   ......+...  .....+..+.    ...++.+++
T Consensus         2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   79 (340)
T PLN02653          2 GDPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWL   79 (340)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHH
Confidence            566778999999999999999999999887  8999887541   1111111100  0011122211    112344556


Q ss_pred             CC--CCEEEEcCCCCCCC-C-CCHHhHHHHHHHHHHHHHHHHHhhCCC----eEEEEecCC-CCccH--HHHHHHHHHhC
Q 018265          113 TG--MDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCCPK----AIVNLISNP-VNSTV--PIAAEVFKKVG  181 (358)
Q Consensus       113 ~~--aDiVIi~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~p~----a~viv~tNP-~d~~t--~~~~~~~~~~~  181 (358)
                      ++  .|+||++|+..... . ......+..|+.....+++.+.++...    ..++++|.- +.-..  ++     ....
T Consensus        80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~~-----~E~~  154 (340)
T PLN02653         80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPPQ-----SETT  154 (340)
T ss_pred             HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCCC-----CCCC
Confidence            54  59999999864321 1 122334567888889999998877643    244444311 10000  00     0001


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCC
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLD  210 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~  210 (358)
                      .+.+...+|.+.....++...+++.++++
T Consensus       155 ~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~  183 (340)
T PLN02653        155 PFHPRSPYAVAKVAAHWYTVNYREAYGLF  183 (340)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHcCCe
Confidence            12345567887766667767777777753

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.74  E-value=0.00021  Score=68.66  Aligned_cols=99  Identities=20%  Similarity=0.323  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC----C------CCCeEEEEeCCCcHHhhhCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----D------TNAVVRGFLGQQQLEDALTGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~----~------~~~~v~~~~~t~d~~~al~~a  115 (358)
                      +|||+|||+ |.+|+.++..|+..+.  ++.++|+++....  .+...    .      ....+..   +++.++++++|
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   72 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAA--EINADRENPRYLPGIKLPDNLRA---TTDLAEALADA   72 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCC
Confidence            479999998 9999999999999887  8999998752111  11111    0      0011222   34667788999


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                      |+||++...                ..+.++++.+..+. |+.+++..+|-++.
T Consensus        73 D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         73 DLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             CEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            999998521                12344445555553 67777777765543

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=97.74  E-value=0.00031  Score=66.89  Aligned_cols=160  Identities=11%  Similarity=0.087  Sum_probs=89.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCc-HHhhh-----CCCCEEEEcC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ-LEDAL-----TGMDIVIIPA  122 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d-~~~al-----~~aDiVIi~a  122 (358)
                      |.|+||+|++|++++..|+..|. ..+.++|..........+.+... .+...   ..+ ++.++     .++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999998875 24667786541111011111110 00000   011 12222     3799999998


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC------CccHHHHHHHHHHhCCCCCCcEEEeeeccH
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------NSTVPIAAEVFKKVGTYDPKRLLGVTMLDV  196 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~------d~~t~~~~~~~~~~~~~p~~kviG~t~lds  196 (358)
                      +.+.............|+....++.+.+.+..  ..++..|...      +...       .......+...+|.+....
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~--~~~i~~SS~~vyg~~~~~~~-------~E~~~~~p~~~Y~~sK~~~  147 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLERE--IPFLYASSAATYGGRTDDFI-------EEREYEKPLNVYGYSKFLF  147 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcC--CcEEEEcchHHhCcCCCCCC-------ccCCCCCCCCHHHHHHHHH
Confidence            75433333344567889999999999998764  3455543321      1000       0111122334566666555


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          197 VRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       197 ~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      .++...+++..+++..-++ ..++|..
T Consensus       148 E~~~~~~~~~~~~~~~~lR~~~vyG~~  174 (308)
T PRK11150        148 DEYVRQILPEANSQICGFRYFNVYGPR  174 (308)
T ss_pred             HHHHHHHHHHcCCCEEEEeeeeecCCC
Confidence            5555555555566555554 5678854

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.69  E-value=0.00062  Score=59.58  Aligned_cols=93  Identities=28%  Similarity=0.323  Sum_probs=65.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCCCCEEEEcCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi~ag~  124 (358)
                      |+|+||+|++|+.++..|+..+.  +|.++-++..+  ..+      .+.++.+.+.    .++.++++++|.||.+.|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~--~~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSK--AED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGG--HHH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchh--ccc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999996  99998876522  111      1223332221    3457889999999999865


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +.+           ....++.+++.+++.... .++++|
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceeee
Confidence            533           167888888888876543 444433

...

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=97.68  E-value=0.00017  Score=67.65  Aligned_cols=98  Identities=19%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKP  128 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~  128 (358)
                      |.|+||+|++|++++..|+..+.  +|+.++++......  +..    ..+..... .+..++++++|+||++++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999998887  99999986521100  000    00111111 23357789999999999865432


Q ss_pred             C----CCHHhHHHHHHHHHHHHHHHHHhhCC
Q 018265          129 G----MTRDDLFNINAGIVKTLCEGIAKCCP  155 (358)
Q Consensus       129 g----~~r~~~~~~N~~i~~~i~~~i~~~~p  155 (358)
                      +    .....+...|+...+.+++.+++...
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  102 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQ  102 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence            2    12344567799999999999998764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02583 cinnamoyl-CoA reductase

Probab=97.67  E-value=0.001  Score=63.38  Aligned_cols=114  Identities=17%  Similarity=0.113  Sum_probs=71.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch----hHHHHHhcCCCCCeEEEEe----CCCcHHhhhCCCCE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTNAVVRGFL----GQQQLEDALTGMDI  117 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~----g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDi  117 (358)
                      ..+|+|+||+|++|++++..|+..|.  +|++++++...    ....++...  ...+..+.    ...++.+++.++|.
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~   81 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSG   81 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCE
Confidence            35899999999999999999999987  88888764311    111222111  11222211    12345678999999


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      |+..++.+........+.+..|+.....+.+.+.+..--..||++|
T Consensus        82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S  127 (297)
T PLN02583         82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS  127 (297)
T ss_pred             EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            9987654322111234567889999999999988763113455443

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=97.67  E-value=0.0002  Score=68.38  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (358)
                      |||.|+||+|++|++++..|...+   +++.+|.... ....|+.+            ...+.++++  ++|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSN------------PEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            689999999999999999998777   4677776421 00011111            112345555  58999999876


Q ss_pred             CCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       125 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ....  ..........|+.....+++..++.+  .+++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            4211  12233445679999999999998865  3555544

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.65  E-value=0.00086  Score=63.77  Aligned_cols=102  Identities=19%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC---CCeEEE-EeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAVVRG-FLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~---~~~v~~-~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|+|+ |.+|..++..|...|.  ++.++|.+.....  .+.....   ...... ...+++.++ ++++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            68999998 9999999999998886  9999998541111  1111000   001110 112345544 49999999985


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccH
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTV  170 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t  170 (358)
                      ...                -+.++++.+..+ .++..|+...|.++...
T Consensus        75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~  107 (304)
T PRK06522         75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE  107 (304)
T ss_pred             ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence            321                123344444443 35678888899987654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.65  E-value=0.00034  Score=60.93  Aligned_cols=65  Identities=17%  Similarity=0.263  Sum_probs=46.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++||++||. |.+|+.++..|...++  +|..||++.  ....++.+..    ....   .++.+++++||+||.+.
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec
Confidence            479999998 9999999999999998  999999864  2233344322    2332   46789999999999973

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02253 xanthoxin dehydrogenase

Probab=97.64  E-value=0.0014  Score=61.45  Aligned_cols=148  Identities=19%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~----  113 (358)
                      .+.+++.|+||+|.+|++++..|+..|.  +|+++|.+..  .....++..   ...+..+. .-+|   .+++++    
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~   90 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVD   90 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999887  8999998652  112222321   11222211 1122   233333    


Q ss_pred             ---CCCEEEEcCCCCCCC-C----CC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          114 ---GMDIVIIPAGVPRKP-G----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~-g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                         ..|++|+.+|..... +    .+   -...+..|+.....+.+.+...   ...+.+++++......          
T Consensus        91 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------  160 (280)
T PLN02253         91 KFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI----------  160 (280)
T ss_pred             HhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc----------
Confidence               689999999864321 1    11   1234556655444444433322   1345666665533211          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                        +.+....+|.+......+.+.++..++
T Consensus       161 --~~~~~~~Y~~sK~a~~~~~~~la~e~~  187 (280)
T PLN02253        161 --GGLGPHAYTGSKHAVLGLTRSVAAELG  187 (280)
T ss_pred             --cCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence              222234577766555667788888775

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.64  E-value=0.00066  Score=70.14  Aligned_cols=116  Identities=15%  Similarity=0.077  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhc-----CCC--CCeEEEEe----CCCcHHhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-----MDT--NAVVRGFL----GQQQLEDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~-----~~~--~~~v~~~~----~t~d~~~a  111 (358)
                      +...|.|+||+|++|+.++..|+..|.  +|++++++..  .....++..     ...  ...+..+.    ...++.++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            445899999999999999999998887  8898888752  112222211     000  01222221    11345567


Q ss_pred             hCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +.++|+||+++|........-...+..|......+++.+.+..-. .||+++
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS  207 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT  207 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence            899999999988653221112233556778888888888776433 455554

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.63  E-value=0.00045  Score=66.42  Aligned_cols=79  Identities=22%  Similarity=0.307  Sum_probs=59.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      .|||+|||+ |.+|.+++..|...|.  +|.++|++..                      .++++++++||+||++.-  
T Consensus         4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp--   56 (308)
T PRK14619          4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS--   56 (308)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC--
Confidence            479999998 9999999999999987  9999997631                      245678899999999842  


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhh--CCCeEEEEecCC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP  165 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP  165 (358)
                                    ...++++++.+..+  .++.+++..|+.
T Consensus        57 --------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g   84 (308)
T PRK14619         57 --------------MKGVRPVAEQVQALNLPPETIIVTATKG   84 (308)
T ss_pred             --------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence                          12445555666543  467777777763

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.62  E-value=0.00082  Score=64.07  Aligned_cols=120  Identities=13%  Similarity=0.161  Sum_probs=71.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-----CCCeEEE-EeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVRG-FLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-----~~~~v~~-~~~t~d~~~al~~aDiVIi  120 (358)
                      |||+|+|+ |.+|..++..|...+.  ++.++++ ..  ....+.+..     ....... ....+|.+++.+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PK--RAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HH--HHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            69999998 9999999999999887  8999997 31  111122111     0001100 0112455565689999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE-eeecc
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTMLD  195 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG-~t~ld  195 (358)
                      +....                -+.++++.+..+ .++..|+...|.++....     +.++  +|+.++++ ++...
T Consensus        75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~-----l~~~--~~~~~v~~g~~~~~  128 (305)
T PRK12921         75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ-----LEPY--FGRERVLGGVVFIS  128 (305)
T ss_pred             Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH-----HHHh--CCcccEEEEEEEEE
Confidence            85321                123344445443 356777788898875532     2332  56667764 44433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.61  E-value=0.0005  Score=68.97  Aligned_cols=111  Identities=21%  Similarity=0.199  Sum_probs=67.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC----------------CCeEEEEeCCCc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------NAVVRGFLGQQQ  107 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d  107 (358)
                      |+.+||+|||. |.+|..+|..|+..|.  ++..+|+++..-..  +.....                ...+..   +++
T Consensus         1 m~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~   72 (415)
T PRK11064          1 MSFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT   72 (415)
T ss_pred             CCccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ecc
Confidence            34679999998 9999999999999987  99999998622111  221100                011111   222


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCccHHH
Q 018265          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPI  172 (358)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~  172 (358)
                          +++||+||++...|.....      ..++..+.+.++.|.++. ++.+||+- |.|....-.+
T Consensus        73 ----~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~  129 (415)
T PRK11064         73 ----PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM  129 (415)
T ss_pred             ----cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence                3589999999887753321      113344555556666655 44554444 5676655443

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.61  E-value=0.0013  Score=60.69  Aligned_cols=158  Identities=16%  Similarity=0.147  Sum_probs=85.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al------  112 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|++++.++  ......++.+..  ..+..+.. -+|.   ++++      
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAER   81 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999988  899999876  222223343321  22222211 1222   2222      


Q ss_pred             -CCCCEEEEcCCCCCCC---C---CCHHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g---~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|+||+++|.....   .   +.-...+..|+..    .+.+.+.+.+.++.+.++++|.-..            ..
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~------------~~  149 (262)
T PRK13394         82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHS------------HE  149 (262)
T ss_pred             cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhh------------cC
Confidence             3489999999864211   1   1122334456655    6666666633334455666543110            01


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+....++.+......+-+.+++.+  .+..+++.++-
T Consensus       150 ~~~~~~~y~~sk~a~~~~~~~la~~~--~~~~i~v~~v~  186 (262)
T PRK13394        150 ASPLKSAYVTAKHGLLGLARVLAKEG--AKHNVRSHVVC  186 (262)
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHh--hhcCeEEEEEe
Confidence            23334456654433334455566654  23445544443

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.60  E-value=0.00045  Score=67.09  Aligned_cols=101  Identities=20%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC------CCeE----EEEeCCCcHHhhhCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------NAVV----RGFLGQQQLEDALTGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~------~~~v----~~~~~t~d~~~al~~a  115 (358)
                      +|||+|||+ |.+|..++..|...|.  +|.++|+++.. .  .+.....      ....    ..+..+++. ++++++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   74 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-D--ELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA   74 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-H--HHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence            379999998 9999999999999887  89999975411 1  1111100      0000    001123455 678999


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCcc
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST  169 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~  169 (358)
                      |+||++...+.                ..++++.+..+ .++.+|+..+|..+..
T Consensus        75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~  113 (341)
T PRK08229         75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA  113 (341)
T ss_pred             CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence            99999863221                12334444444 3567777778987654

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.60  E-value=0.0011  Score=66.81  Aligned_cols=112  Identities=15%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC------------CCeEEEEeCCCcHHhh
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------NAVVRGFLGQQQLEDA  111 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~~a  111 (358)
                      .++|||+|||- |+||..+|..|+. ++  +++.||+++.  .+.+|.....            ...+.   .+++. ++
T Consensus         4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~---~t~~~-~~   73 (425)
T PRK15182          4 IDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLK---FTSEI-EK   73 (425)
T ss_pred             CCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCee---EEeCH-HH
Confidence            45689999998 9999999999876 45  9999999862  2233332211            00122   23454 57


Q ss_pred             hCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEE-ecCCCCccHH
Q 018265          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL-ISNPVNSTVP  171 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv-~tNP~d~~t~  171 (358)
                      +++||++|++.+.|..... .     ..+.-+....+.|.++. +..+||+ .|-|......
T Consensus        74 ~~~advvii~Vptp~~~~~-~-----~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~  129 (425)
T PRK15182         74 IKECNFYIITVPTPINTYK-Q-----PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEE  129 (425)
T ss_pred             HcCCCEEEEEcCCCCCCCC-C-----cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHH
Confidence            8999999999988854321 1     12233333344454444 3344433 3666665543

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.60  E-value=0.00034  Score=68.28  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC----CCCC-------eEEEEeCCCcHHhhh
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTNA-------VVRGFLGQQQLEDAL  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~----~~~~-------~v~~~~~t~d~~~al  112 (358)
                      .++|||+|+|+ |.+|+.++..|...+   +++++..++  ....++...    ...+       .+.   .++|+.+++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~--~~~~~i~~~~~~~~~l~~~~~l~~~i~---~t~d~~~a~   75 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSA--ETADDINDNHRNSRYLGNDVVLSDTLR---ATTDFAEAA   75 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCH--HHHHHHHhcCCCcccCCCCcccCCCeE---EECCHHHHH
Confidence            35689999998 999999999999887   456777654  222223211    0111       222   246788889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                      +++|+||++.-                ...++++++++..+- ++..++.++|-.+.
T Consensus        76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            99999999842                234556666666543 56778888887764

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.59  E-value=0.00051  Score=66.42  Aligned_cols=98  Identities=15%  Similarity=0.364  Sum_probs=63.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc----CC------CCCeEEEEeCCCcHHhhh-CCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----MD------TNAVVRGFLGQQQLEDAL-TGM  115 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~----~~------~~~~v~~~~~t~d~~~al-~~a  115 (358)
                      |||+|||| |.+|+.++..|...+.  +|.++++++.  .+..+..    ..      ....++.   ++|+.+++ .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence            68999998 9999999999999886  8999998652  2222221    10      0112333   35677776 589


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHh-h-CCCeEEEEecCCCCc
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C-CPKAIVNLISNPVNS  168 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~-~p~a~viv~tNP~d~  168 (358)
                      |+||++.-                ..-+.++++.+.. + .++..++..+|=.+.
T Consensus        73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            99999842                2334445555554 3 367777777777644

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.0024  Score=58.90  Aligned_cols=38  Identities=32%  Similarity=0.462  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..+.++|.|+||+|.+|+.++..|+..|.  +|++++++.
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34567999999999999999999999887  899999865

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.54  E-value=0.00044  Score=66.58  Aligned_cols=123  Identities=15%  Similarity=0.215  Sum_probs=72.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-----CCCCCeEEEEeCCCcHHhhhCCCCE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-----MDTNAVVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-----~~~~~~v~~~~~t~d~~~al~~aDi  117 (358)
                      ++.+|||+|+|+ |.||..++..|...|.  ++.+++++...  +....-     ......+......++. ++...+|+
T Consensus         2 ~~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~   75 (313)
T PRK06249          2 DSETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYE--AVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDW   75 (313)
T ss_pred             CCcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHH--HHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCE
Confidence            456789999998 9999999999998887  89999886521  111110     0000011101111233 45788999


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eec
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TML  194 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~l  194 (358)
                      ||++.-...                ..+.++.+... .|++.++...|=++..-     .+.++  +|+.+|++- +..
T Consensus        76 vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~~--~~~~~v~~g~~~~  131 (313)
T PRK06249         76 VLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLREI--LPAEHLLGGLCFI  131 (313)
T ss_pred             EEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHHH--CCCCcEEEEeeeE
Confidence            999853211                12233333332 37888888888877542     22333  677787654 443

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.51  E-value=0.00072  Score=66.02  Aligned_cols=96  Identities=21%  Similarity=0.340  Sum_probs=61.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEeCCC---chhHHHHHhcC--C--C------CCeEEEEeCCCcH
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADISHM--D--T------NAVVRGFLGQQQL  108 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~------~~~el~L~D~~~---~~g~~~dl~~~--~--~------~~~v~~~~~t~d~  108 (358)
                      ||+|||+ |..|.++|..|..++      ...+|.|+.+++   .......++..  .  +      .+.++.   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            6999998 999999999998876      123999998743   12222333221  1  1      112333   4689


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  163 (358)
                      ++++++||+||++.  |              ...++++++++..+- ++..++.+|
T Consensus        77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t  116 (342)
T TIGR03376        77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI  116 (342)
T ss_pred             HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence            99999999999973  2              345556666666543 344555554

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02240 UDP-glucose 4-epimerase

Probab=97.51  E-value=0.0019  Score=62.48  Aligned_cols=116  Identities=19%  Similarity=0.145  Sum_probs=71.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCC--CCCeEEEEe----CCCcHHhhhC--C
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD--TNAVVRGFL----GQQQLEDALT--G  114 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~----~t~d~~~al~--~  114 (358)
                      ..+||.|+||+|++|++++..|+..+.  +|+++|....  ......+.+..  ....++.+.    ...++.++++  +
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            346999999999999999999998886  8999986431  11111111110  011122211    1123334444  6


Q ss_pred             CCEEEEcCCCCCC-CC-CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          115 MDIVIIPAGVPRK-PG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       115 aDiVIi~ag~~~~-~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +|+||++++.... .. ......+..|+.....+++.+.+.... .++++|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  131 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSS  131 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            8999999886421 11 234556788999999999988776433 344444

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.0016  Score=60.28  Aligned_cols=117  Identities=21%  Similarity=0.258  Sum_probs=65.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEE-EeCCCcHHhhhC--------CC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDALT--------GM  115 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~-~~~t~d~~~al~--------~a  115 (358)
                      ++|.|+||+|.+|+.++..|+..|.  +++++|.+...  ....++..... ..+.. +....+.+++++        ..
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGNA-WTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCce-EEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            3699999999999999999999887  89999976521  11112221110 00111 111122233333        45


Q ss_pred             CEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHh---hCCCeEEEEecCCC
Q 018265          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAK---CCPKAIVNLISNPV  166 (358)
Q Consensus       116 DiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNP~  166 (358)
                      |+||+++|......   .+   -...+..|+.....+++.+..   ..+.+.+++++...
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~  138 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSAS  138 (260)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchh
Confidence            99999998753211   11   233456676655555555432   23455666665543

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.0017  Score=68.50  Aligned_cols=106  Identities=14%  Similarity=0.109  Sum_probs=66.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----------CcHHhhhCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----------QQLEDALTG  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~--~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----------~d~~~al~~  114 (358)
                      |||.|+||+|++|++++..|+.  .+.  +|..++++.......++........+..+.+.          .++ +.+++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence            6899999999999999999984  444  89999986522222222111000122221111          122 23489


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCC
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK  156 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  156 (358)
                      +|+||++|+... ......+....|+.....+++.+.+...+
T Consensus        78 ~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~  118 (657)
T PRK07201         78 IDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAA  118 (657)
T ss_pred             CCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence            999999988532 12334556678999999999998876433

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.47  E-value=0.0011  Score=64.29  Aligned_cols=97  Identities=21%  Similarity=0.239  Sum_probs=61.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-------CCC-CCeEEEEeCCCcHHhhhCCCCE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-------MDT-NAVVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-------~~~-~~~v~~~~~t~d~~~al~~aDi  117 (358)
                      +|||+|||+ |.+|..++..|+..|.  +|.++|++........-.+       ... ...+..   +++++++++++|+
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD~   77 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGADF   77 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCCE
Confidence            579999998 9999999999998887  8999998652211111111       000 011222   3567788899999


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      ||++.-..                .++++.+.+   .|+.+++.++|..+
T Consensus        78 Vi~~v~~~----------------~~~~v~~~l---~~~~~vi~~~~Gi~  108 (328)
T PRK14618         78 AVVAVPSK----------------ALRETLAGL---PRALGYVSCAKGLA  108 (328)
T ss_pred             EEEECchH----------------HHHHHHHhc---CcCCEEEEEeeccc
Confidence            99984211                123333333   35667777788653

>PRK08643 acetoin reductase; Validated

Probab=97.46  E-value=0.0055  Score=56.46  Aligned_cols=156  Identities=18%  Similarity=0.181  Sum_probs=84.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-------C
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------T  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------~  113 (358)
                      .++.|+||+|.+|.+++..|+..|.  +++++|.+.  ......++.+..  ..+..+.. -+|   +.+++       .
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3789999999999999999999887  899999875  222223343221  11211111 112   12222       3


Q ss_pred             CCCEEEEcCCCCCC-CC--CC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRK-PG--MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~-~g--~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      +.|+||+++|.... +-  .+   -...+..|+..    .+.+.+.+.+..+++.+++++......            +.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~  146 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV------------GN  146 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc------------CC
Confidence            68999999986421 11  11   12234455544    334444444434456777776543221            23


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      |....++.+......+.+.++..+  .+..+++..+-
T Consensus       147 ~~~~~Y~~sK~a~~~~~~~la~e~--~~~gi~v~~i~  181 (256)
T PRK08643        147 PELAVYSSTKFAVRGLTQTAARDL--ASEGITVNAYA  181 (256)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHh--cccCcEEEEEe
Confidence            333345554433344556666665  34456554443

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.45  E-value=0.001  Score=63.02  Aligned_cols=64  Identities=20%  Similarity=0.240  Sum_probs=45.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||. |.+|.+++..|...+.  +|.++|.+. ....+.+.   ..   +..  .+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---g~---~~~--~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---GL---VDE--ASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---CC---ccc--ccCCH-hHhcCCCEEEEcC
Confidence            68999998 9999999999998887  899999875 11112111   10   111  12344 5689999999985

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=97.44  E-value=0.00063  Score=63.91  Aligned_cols=95  Identities=22%  Similarity=0.302  Sum_probs=66.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCC--CEEEEcCCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP  125 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a--DiVIi~ag~~  125 (358)
                      ||.|+||+|++|++++..|...|.  ++++++...     .|+.+            ..++.++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999998887  888887631     12211            12345667666  9999998864


Q ss_pred             CCCC--CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          126 RKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       126 ~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ....  .........|+.....+++.+.+...  .++++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  23445667889999999999887643  455544

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=97.44  E-value=0.00032  Score=65.72  Aligned_cols=112  Identities=15%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      .++||+|+||+|||||+++-.|+..+.  ++...|... .+....+++...++..+... ...-.--++.+|-|+++|..
T Consensus        26 ~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~f-tg~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAap  101 (350)
T KOG1429|consen   26 QNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYF-TGRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAAP  101 (350)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccc-ccchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhccC
Confidence            347999999999999999999999886  999999754 22223344443333322211 11113457999999998764


Q ss_pred             CCCCC--CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018265          125 PRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (358)
Q Consensus       125 ~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  162 (358)
                      ...++  .+-.+.+..|.-.........++.  ++.++.+
T Consensus       102 asp~~y~~npvktIktN~igtln~lglakrv--~aR~l~a  139 (350)
T KOG1429|consen  102 ASPPHYKYNPVKTIKTNVIGTLNMLGLAKRV--GARFLLA  139 (350)
T ss_pred             CCCcccccCccceeeecchhhHHHHHHHHHh--CceEEEe
Confidence            32222  222233344433333333333333  2555554

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.43  E-value=0.001  Score=65.00  Aligned_cols=118  Identities=20%  Similarity=0.234  Sum_probs=76.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEE----eCCCcHHhhhCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~----~~t~d~~~al~~aDiVI  119 (358)
                      ++.+++|+||+|++|.+++..|.+.+...+|.++|.... ...-.|..... ...++..    ....+...|+.++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~-~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFR-SGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhccc-CCceeEEecchhhhhhhhhhccCc-eEE
Confidence            456999999999999999999999886669999998762 11111111111 1122221    1224567899999 777


Q ss_pred             EcCCCC-CCCCC-CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          120 IPAGVP-RKPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       120 i~ag~~-~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      +++..+ ....+ .|......|+...+.+.+...+.+-+  .+++|...
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~--~lIYtSs~  127 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK--RLIYTSSA  127 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC--EEEEecCc
Confidence            755432 12233 36666788999999999999987633  34444433

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.39  E-value=0.0063  Score=56.16  Aligned_cols=118  Identities=12%  Similarity=0.147  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-------C
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------T  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------~  113 (358)
                      .+|.|+||+|.+|++++..|++.|.  +|+++|.+.  ......++........+..+.. -+|   .+.++       .
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999887  899999865  2222222322110012222111 122   22222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCCHH---hHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCC
Q 018265          114 GMDIVIIPAGVPRKP---GMTRD---DLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      ..|+||+++|.+...   .....   ..+..|+.-    .+.+.+.+.+..+++.+++++...
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            579999999865321   12222   223445443    455666665544456777766643

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0081  Score=54.93  Aligned_cols=116  Identities=18%  Similarity=0.039  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCcHHhhh----CCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDAL----TGMD  116 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al----~~aD  116 (358)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++.... ...+..+..    ..+.++.+    +..|
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d   78 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD   78 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence            5899999999999999999999887  899999876  222223332211 122222211    11222222    3459


Q ss_pred             EEEEcCCCCCC---CCCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 018265          117 IVIIPAGVPRK---PGMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (358)
Q Consensus       117 iVIi~ag~~~~---~g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  165 (358)
                      +||+.+|....   .+.+.   .+.+..|......+.+.+..+   ...+.++++|..
T Consensus        79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  136 (243)
T PRK07102         79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV  136 (243)
T ss_pred             EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence            99998875321   12222   234566766656566555443   234566666543

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.39  E-value=0.0036  Score=58.81  Aligned_cols=163  Identities=17%  Similarity=0.123  Sum_probs=94.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCcHHh-----
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLED-----  110 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~-----  110 (358)
                      +++++..++|+||++.+|..+|..|+.+|.  .|+|+.+++  +...+.++++.. ...+..+.    ...+.+.     
T Consensus         2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l   78 (265)
T COG0300           2 GPMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDEL   78 (265)
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHH
Confidence            356677999999999999999999999998  999999987  566667777543 12222211    1112211     


Q ss_pred             --hhCCCCEEEEcCCCCCCC------CCCHHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          111 --ALTGMDIVIIPAGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       111 --al~~aDiVIi~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                        ..-..|+.|..||.....      -.+-.+++.-|+-...++...+...   .-.+.|||++.=.....         
T Consensus        79 ~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p---------  149 (265)
T COG0300          79 KERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIP---------  149 (265)
T ss_pred             HhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCC---------
Confidence              112689999999975322      1223456677766555555444432   23467787754332221         


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                         .|..-+++-|.---.-|...|...+  ....|++.++..
T Consensus       150 ---~p~~avY~ATKa~v~~fSeaL~~EL--~~~gV~V~~v~P  186 (265)
T COG0300         150 ---TPYMAVYSATKAFVLSFSEALREEL--KGTGVKVTAVCP  186 (265)
T ss_pred             ---CcchHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEEec
Confidence               1222233333211222444444444  566677776663

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.39  E-value=0.00089  Score=60.60  Aligned_cols=168  Identities=17%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCC--CEEEEcCCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGM--DIVIIPAGVP  125 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~a--DiVIi~ag~~  125 (358)
                      |.|+||+|++|++++..|+..+.  +++-+............... . ..+.. .....++++++++.  |.||++++..
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-~-~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~   76 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLN-V-EFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS   76 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTT-E-EEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccce-E-EEEEeeccccccccccccccCceEEEEeeccc
Confidence            78999999999999999999987  65544443322211111110 0 00000 01123456777777  9999999865


Q ss_pred             C--CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 018265          126 R--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (358)
Q Consensus       126 ~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~l  203 (358)
                      .  .......+....|+...+.+.+.+.+... ..+++.+. ..+...-....+.....+.+...+|.+.....++...+
T Consensus        77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~  154 (236)
T PF01370_consen   77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLRDY  154 (236)
T ss_dssp             SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            3  11134566788899999999999998876 45555443 21110000000000000112233566555566666777


Q ss_pred             HHHhCCCCCCCc-eEEEEec
Q 018265          204 AEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       204 A~~l~v~~~~v~-~~v~G~h  222 (358)
                      +++.+++...++ ..++|.+
T Consensus       155 ~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  155 AKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHTSEEEEEEESEEESTT
T ss_pred             cccccccccccccccccccc
Confidence            777787776665 4577765

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02686 cinnamoyl-CoA reductase

Probab=97.39  E-value=0.0012  Score=65.03  Aligned_cols=178  Identities=13%  Similarity=0.099  Sum_probs=97.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcC---C-CCCeEEEEe----CCCcHHhhh
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM---D-TNAVVRGFL----GQQQLEDAL  112 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~---~-~~~~v~~~~----~t~d~~~al  112 (358)
                      ...+.++|.|+||+|++|++++..|+..|.  +|+++..+... ....++...   . ....+..+.    ...++.+++
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i  126 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAF  126 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence            346678999999999999999999999987  88765544311 111122110   0 001222211    112456778


Q ss_pred             CCCCEEEEcCCCCCCCCC--CHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCC-Ccc--------HHHHHHHHH--
Q 018265          113 TGMDIVIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV-NST--------VPIAAEVFK--  178 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~-d~~--------t~~~~~~~~--  178 (358)
                      +++|.||++++.....+.  ....+...|+....++.+.+.+. ..+ .+|.+|... .+.        .....+-.+  
T Consensus       127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~  205 (367)
T PLN02686        127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEESWSD  205 (367)
T ss_pred             HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCCCCC
Confidence            999999998875322221  12344567889999999998875 233 444444321 000        000000000  


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      .....++...+|.+.+...++...+++..|++..-++ +.|+|..
T Consensus       206 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~  250 (367)
T PLN02686        206 ESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG  250 (367)
T ss_pred             hhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence            0000111224566666666666666777777665554 5688864

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.38  E-value=0.0043  Score=56.92  Aligned_cols=115  Identities=16%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CC---cHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQ---QLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al------  112 (358)
                      +..+|.|+||+|.+|++++..|+..|.  ++++++++..  .....++....  ..+..+.. -+   ++.+++      
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   78 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVET   78 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  8999998762  22223333211  12222111 11   222222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 018265          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  164 (358)
                       .+.|+||+++|......   .+   -.+.+..|+..    ++.+.+.+++.. ...+++++.
T Consensus        79 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss  140 (258)
T PRK12429         79 FGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMAS  140 (258)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence             36899999988642211   11   12233445444    666666666543 345555544

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.37  E-value=0.0062  Score=55.62  Aligned_cols=36  Identities=25%  Similarity=0.272  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.++|.|+||+|.+|+.++..|++.|.  +|++++++.
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~   39 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE   39 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446999999999999999999999887  899999876

>PRK05717 oxidoreductase; Validated

Probab=97.37  E-value=0.0022  Score=59.26  Aligned_cols=155  Identities=15%  Similarity=0.142  Sum_probs=87.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc---HHhh-------hCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LTG  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l~~  114 (358)
                      .++|.|+||+|++|++++..|+..|.  +++++|++....... ..+..  ..+..+.. -+|   .+++       +..
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45899999999999999999998886  899999765221111 11111  11111111 112   1111       134


Q ss_pred             CCEEEEcCCCCCCCC-----CC---HHhHHHHHHHHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          115 MDIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       115 aDiVIi~ag~~~~~g-----~~---r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      .|+||+.+|......     .+   -...+..|+.....+.+.+..+  ...+.+|++|.-....            +.+
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~------------~~~  152 (255)
T PRK05717         85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ------------SEP  152 (255)
T ss_pred             CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC------------CCC
Confidence            799999998653211     11   1245567777666666666543  1245666665433221            233


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..-.+|.+......+...+++.++-   .+++.++.
T Consensus       153 ~~~~Y~~sKaa~~~~~~~la~~~~~---~i~v~~i~  185 (255)
T PRK05717        153 DTEAYAASKGGLLALTHALAISLGP---EIRVNAVS  185 (255)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhcC---CCEEEEEe
Confidence            3345677654445677788888752   25554443

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.35  E-value=0.0015  Score=63.51  Aligned_cols=100  Identities=24%  Similarity=0.259  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      +.+..+|.|+||+|++|+.++..|....-..+|++++++.  +.....++.+.    .      ..++++++.++|+||.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~------i~~l~~~l~~aDiVv~  221 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----K------ILSLEEALPEADIVVW  221 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----c------HHhHHHHHccCCEEEE
Confidence            4556799999999999999999997643245899998764  22222222211    1      1256789999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t  170 (358)
                      +++.+...-.+..++                  .+..+++=++-|=|+-.
T Consensus       222 ~ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        222 VASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CCcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCCc
Confidence            988764211111111                  25577888899988863

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0082  Score=56.13  Aligned_cols=158  Identities=11%  Similarity=0.079  Sum_probs=80.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCcHHh---------hhC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLED---------ALT  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~~~---------al~  113 (358)
                      ...+.|+||+|.+|++++..|+..|.  .|++++.+..  .....++.+......+..+. .-+|.++         .+.
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   80 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG   80 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence            34689999999999999999999887  8999987651  11222222211111222221 1123211         123


Q ss_pred             CCCEEEEcCCCCCCC--C-CC---HHhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKP--G-MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~--g-~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|+||+++|.....  . .+   -.+.+..|......+.+.    +++... +.+++++.-....            +.
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vsS~~~~~------------~~  147 (280)
T PRK06914         81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINISSISGRV------------GF  147 (280)
T ss_pred             CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEECcccccC------------CC
Confidence            579999998864321  1 11   122345566554444444    444433 4455554322211            23


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +..-.++.+......+...++..+  .+..+++.++-
T Consensus       148 ~~~~~Y~~sK~~~~~~~~~l~~~~--~~~~i~v~~v~  182 (280)
T PRK06914        148 PGLSPYVSSKYALEGFSESLRLEL--KPFGIDVALIE  182 (280)
T ss_pred             CCCchhHHhHHHHHHHHHHHHHHh--hhhCCEEEEEe
Confidence            333445554433334555555443  23445544443

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.34  E-value=0.0047  Score=56.96  Aligned_cols=157  Identities=15%  Similarity=0.107  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al------  112 (358)
                      +..+|.|+||+|.+|+.++..|+..|.  +|++.|.++  ......++.+..  ..+..+.. -+   ++++++      
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAE   84 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999887  899999876  222222333221  12221111 11   222222      


Q ss_pred             -CCCCEEEEcCCCCCC-C--CCC---HHhHHHHHHHHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 -TGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       ...|+||+.+|.... +  ..+   -...+..|+.....+++.+.++.   ..+.++++|......            +
T Consensus        85 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------------~  152 (255)
T PRK07523         85 IGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL------------A  152 (255)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc------------C
Confidence             357999999886421 1  111   23345567665555555555432   345677766543211            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .+..-.++.+......+.+.++..++  +..+++.++
T Consensus       153 ~~~~~~y~~sK~a~~~~~~~~a~e~~--~~gi~v~~i  187 (255)
T PRK07523        153 RPGIAPYTATKGAVGNLTKGMATDWA--KHGLQCNAI  187 (255)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhh--HhCeEEEEE
Confidence            33333455554333445566666553  334544443

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.34  E-value=0.0046  Score=57.29  Aligned_cols=152  Identities=17%  Similarity=0.157  Sum_probs=81.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhh-------hC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l~  113 (358)
                      |+|.|+||+|.+|..++..|+..|.  ++++.|++.  ......++.+..   .+..+. .-+|   .+++       +.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g   75 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG   75 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999987  899999875  222223343211   111111 1112   2222       24


Q ss_pred             CCCEEEEcCCCCCC-C----CCCHHhH---HHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 GMDIVIIPAGVPRK-P----GMTRDDL---FNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 ~aDiVIi~ag~~~~-~----g~~r~~~---~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      .-|++|+.+|.... +    ..+..++   +..|+    -+.+.+.+.+.+....+.|+++|.-....            
T Consensus        76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~------------  143 (259)
T PRK08340         76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE------------  143 (259)
T ss_pred             CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC------------
Confidence            68999999986421 1    1122222   22232    23445555554333456777766433211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~  217 (358)
                      ..|..-.++.+.-....+-+.+|+.++  +..|++.
T Consensus       144 ~~~~~~~y~~sKaa~~~~~~~la~e~~--~~gI~v~  177 (259)
T PRK08340        144 PMPPLVLADVTRAGLVQLAKGVSRTYG--GKGIRAY  177 (259)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhC--CCCEEEE
Confidence            122223344443333456677777764  4455443

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0045  Score=56.94  Aligned_cols=156  Identities=13%  Similarity=0.052  Sum_probs=85.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDALT------  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~------  113 (358)
                      ..+|.|+||+|.+|+.++..|+..|.  ++++++++.  ......++....  ..+..+.. -+   +.+++++      
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   82 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY   82 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999998886  899999875  222223333221  12222111 11   2233333      


Q ss_pred             -CCCEEEEcCCCCCCC----CCCHH---hHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 -GMDIVIIPAGVPRKP----GMTRD---DLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~----g~~r~---~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       .-|+||+.+|.....    ..+..   ..+..|+.-...+    .+.+.+. ..+.+++++......            
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS~~~~~------------  149 (253)
T PRK06172         83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTASVAGLG------------  149 (253)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhcc------------
Confidence             349999999864221    12222   2344565544333    3344332 235566665533211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.++.+......+-..++..+.  +..+++..+.
T Consensus       150 ~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~~i~v~~i~  186 (253)
T PRK06172        150 AAPKMSIYAASKHAVIGLTKSAAIEYA--KKGIRVNAVC  186 (253)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            233333455554334456677777763  4556665554

>PRK06182 short chain dehydrogenase; Validated

Probab=97.33  E-value=0.0055  Score=57.23  Aligned_cols=114  Identities=14%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhC-------CCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT-------GMD  116 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~-------~aD  116 (358)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.+++...  ..++..... ..+.. .+...+.+++++       +.|
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id   76 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRID   76 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            346899999999999999999998887  88999876511  112221111 11111 111122333333       789


Q ss_pred             EEEEcCCCCCCC---CC---CHHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 018265          117 IVIIPAGVPRKP---GM---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       117 iVIi~ag~~~~~---g~---~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +||+.+|.....   ..   .-...+..|...    ++.+.+.+++... +.+++++.
T Consensus        77 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         77 VLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            999999864221   11   122334555533    5666666665543 45666654

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0041  Score=58.13  Aligned_cols=154  Identities=12%  Similarity=0.013  Sum_probs=82.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCcH---Hhh-------hCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LTGM  115 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l~~a  115 (358)
                      ++|.|+||+|++|++++..|+..|.  .+++++.+..  ...++.... ...+..+.. -+|.   +++       +.+.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999887  8888887641  111221110 011221111 1222   222       2457


Q ss_pred             CEEEEcCCCCCCCC-C--C---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018265          116 DIVIIPAGVPRKPG-M--T---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       116 DiVIi~ag~~~~~g-~--~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      |+||+++|...... .  +   -...+..|+.....+++.+..+   ...+.++++|.-...            .+.|..
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~  145 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQ------------IAYPGF  145 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccc------------cCCCCC
Confidence            99999998653211 1  1   1234556777776777665322   223456665542211            123444


Q ss_pred             cEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      -.++.+......+...+++.+.  +..+++.++
T Consensus       146 ~~Y~~sK~a~~~~~~~l~~~~~--~~gi~v~~v  176 (276)
T PRK06482        146 SLYHATKWGIEGFVEAVAQEVA--PFGIEFTIV  176 (276)
T ss_pred             chhHHHHHHHHHHHHHHHHHhh--ccCcEEEEE
Confidence            4555554444445566666542  344544443

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0046  Score=58.01  Aligned_cols=145  Identities=11%  Similarity=0.047  Sum_probs=78.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------CC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~  114 (358)
                      .++|.|+||+|.+|++++..|+..|.  +|++++++...  ..++.... ...+..+. .-+|   ..+++       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~--~~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAA--RADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHH--HHHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45799999999999999999999887  89999986521  11222211 11111111 1112   22222       25


Q ss_pred             CCEEEEcCCCCCC---CCCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          115 MDIVIIPAGVPRK---PGMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       115 aDiVIi~ag~~~~---~g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      .|+||+++|....   ...+.   ...+..|+.-...+.+.+..+   ...+.+|++|.-....            +.|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~------------~~~~  146 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI------------TMPG  146 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC------------CCCC
Confidence            8999999986421   11222   233566776666666554332   2234566665432221            2333


Q ss_pred             CcEEEeeeccHHHHHHHHHHHh
Q 018265          186 KRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l  207 (358)
                      .-.++.+......+...++..+
T Consensus       147 ~~~Y~~sK~a~~~~~~~la~e~  168 (277)
T PRK06180        147 IGYYCGSKFALEGISESLAKEV  168 (277)
T ss_pred             cchhHHHHHHHHHHHHHHHHHh
Confidence            3445554333334455556554

>PRK12320 hypothetical protein; Provisional

Probab=97.32  E-value=0.0019  Score=68.48  Aligned_cols=101  Identities=14%  Similarity=0.074  Sum_probs=65.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||.|+||+|++|++++..|...|.  +|..+|.....     ..+.. ...+..-.....+.++++++|+||++++...
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~-ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~   72 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPR-VDYVCASLRNPVLQELAGEADAVIHLAPVDT   72 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCC-ceEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence            6999999999999999999998887  89999875311     11100 0111110001134566789999999987531


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                        ..    ....|+....++++.+++.+.  ++|++|
T Consensus        73 --~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         73 --SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             --cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence              11    124688888889998887653  455554

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0052  Score=55.78  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCC-C---cHHhhh-------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-Q---QLEDAL-------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~~al-------  112 (358)
                      .++|+|+||+|.+|++++..|+..|.  +|++++++..  .....++...   ..+..+... +   ++.+++       
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998877  8999998752  2222333321   112221111 1   222223       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---hHHHHHHHHHHHHHHHHHhh--CCCeEEEEecCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMTRD---DLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP  165 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP  165 (358)
                      .++|+||+++|.....   ..+..   +.+..|+.....+.+.+.+.  ...+.+++++..
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            3799999998754321   11222   23455555444444444332  134566666654

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.29  E-value=0.0019  Score=62.00  Aligned_cols=68  Identities=25%  Similarity=0.259  Sum_probs=47.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +||+|||+ |.+|..++..|...+...+|.++|++...  ...+....  .....   ..++++++++||+||++.
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~--~~~a~~~g--~~~~~---~~~~~~~~~~aDvViiav   74 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAET--RARARELG--LGDRV---TTSAAEAVKGADLVILCV   74 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHH--HHHHHhCC--CCcee---cCCHHHHhcCCCEEEECC
Confidence            58999998 99999999999888765589999987521  11111111  11111   234567889999999985

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.007  Score=56.50  Aligned_cols=161  Identities=18%  Similarity=0.098  Sum_probs=87.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~----  113 (358)
                      ++.++|.|+||+|.+|++++..|+..|.  +|++++.+.  ......++........+..+.. -+|   .+..++    
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA   82 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3456999999999999999999999987  899999765  2222233322111112222111 112   222333    


Q ss_pred             ---CCCEEEEcCCCCCCC----CCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 ---GMDIVIIPAGVPRKP----GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                         ..|+||+.+|.....    ..+.   ...+..|......+.+.+.++   ...+.++++|.....            
T Consensus        83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~------------  150 (276)
T PRK05875         83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAAS------------  150 (276)
T ss_pred             HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhc------------
Confidence               689999998853211    1121   223445655555555444332   234566666543211            


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+.|..-.++.+......+...+++.++  ...+++.++.
T Consensus       151 ~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~i~  188 (276)
T PRK05875        151 NTHRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVNSIR  188 (276)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            1123333455554444556667776664  4556665554

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.01  Score=55.56  Aligned_cols=160  Identities=15%  Similarity=0.147  Sum_probs=89.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------hhHHHHHhcCCCCCeEEEE----eCCCcHHhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTNAVVRGF----LGQQQLEDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---------~g~~~dl~~~~~~~~v~~~----~~t~d~~~a  111 (358)
                      +..++.|+||+|.+|++++..|+..|.  +|++++++..         .....++....  ..+..+    +...+.+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~   80 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAA   80 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHH
Confidence            345899999999999999999999887  8999997641         11122232211  111111    111122233


Q ss_pred             hC-------CCCEEEEcCCCCCC-C--CCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHH
Q 018265          112 LT-------GMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAE  175 (358)
Q Consensus       112 l~-------~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~  175 (358)
                      ++       ..|+||+++|.... +  ..+.   ...+..|+.-...+++.+..+   ...+.+++++.+....      
T Consensus        81 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------  154 (273)
T PRK08278         81 VAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD------  154 (273)
T ss_pred             HHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc------
Confidence            32       67999999986321 1  1222   223445555444444444322   2346677766543221      


Q ss_pred             HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       176 ~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                          ...++....++.+.....++...++..++  +..|++..+.
T Consensus       155 ----~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~  193 (273)
T PRK08278        155 ----PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW  193 (273)
T ss_pred             ----ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence                01124445677776666677888888875  3556655554

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.28  E-value=0.0024  Score=64.48  Aligned_cols=66  Identities=24%  Similarity=0.346  Sum_probs=47.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+||||.|.+|..++..|...|.  ++.++|.+....  .++....   .+..   +++..+++.+||+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~---gv~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL---GVEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc---CCee---ccCHHHHhccCCEEEEec
Confidence            6899998569999999999998887  899999875221  1111110   1111   346678899999999985

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0095  Score=54.27  Aligned_cols=118  Identities=17%  Similarity=0.249  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhH----HHHHhcCCCCCeEEEEeC-CCc---HHhhh--
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV----TADISHMDTNAVVRGFLG-QQQ---LEDAL--  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~----~~dl~~~~~~~~v~~~~~-t~d---~~~al--  112 (358)
                      +.++|.|+||+|++|++++..|+..|.  ++++++...  ....    ..++....  ..+..+.. -+|   .+.++  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAG--GKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHH
Confidence            457999999999999999999999887  888887643  1111    11222111  12222111 112   22222  


Q ss_pred             -----CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHh----hCCCeEEEEecCCC
Q 018265          113 -----TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAK----CCPKAIVNLISNPV  166 (358)
Q Consensus       113 -----~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNP~  166 (358)
                           ...|.||+.+|.....   ..+.   ...+..|......+++.+..    ......+++++...
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~  149 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVA  149 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCch
Confidence                 4689999999864321   1111   23456777777777777651    22234566655443

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.28  E-value=0.0036  Score=62.23  Aligned_cols=114  Identities=20%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h--HHHHHhcCCCCCe-EEE-EeCCCcHHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTNAV-VRG-FLGQQQLEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g--~~~dl~~~~~~~~-v~~-~~~t~d~~~al~----  113 (358)
                      .+.+||.|+||+|++|++++..|+..|.  +|++++++...  .  ...++........ +.. .....++..+++    
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            3457999999999999999999998887  89999876511  0  1111111100111 111 111133455566    


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++|+||++++.+.. +  ..+.+..|......+.+.+++..-. .++++|
T Consensus       136 ~~D~Vi~~aa~~~~-~--~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS  181 (390)
T PLN02657        136 PVDVVVSCLASRTG-G--VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS  181 (390)
T ss_pred             CCcEEEECCccCCC-C--CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            59999998764321 1  1233466777888888888876543 344444

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0057  Score=57.52  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +...+.|+||+|.+|++++..|+..|.  .|++.|.+.  ......++....  ..+..+.. -+|   .++++      
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   80 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL   80 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999987  899999876  222223343211  12222111 112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  164 (358)
                       ...|+||+.+|.....   ..+.   ...+..|+...    +.+.+.+.+....+.+++++.
T Consensus        81 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         81 LGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence             3479999999864211   1222   22345555444    444444444443456666654

>PRK07985 oxidoreductase; Provisional

Probab=97.27  E-value=0.017  Score=54.84  Aligned_cols=158  Identities=16%  Similarity=0.090  Sum_probs=85.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--h-hHHHHH-hcCCCCCeEEEEe-CCCcH----------
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P-GVTADI-SHMDTNAVVRGFL-GQQQL----------  108 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~-g~~~dl-~~~~~~~~v~~~~-~t~d~----------  108 (358)
                      ++..++.|+||+|.+|.+++..|+..|.  ++++.+.+..  . ....++ ....  ..+..+. .-+|.          
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~  122 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEA  122 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHH
Confidence            4446899999999999999999999987  8888876431  1 111122 1111  1222111 11221          


Q ss_pred             HhhhCCCCEEEEcCCCCCC--C--CCCH---HhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          109 EDALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      .+.+...|++|+.+|....  +  ..+.   ...+..|+.....+++.+..+- ..+.||++|......           
T Consensus       123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~-----------  191 (294)
T PRK07985        123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ-----------  191 (294)
T ss_pred             HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc-----------
Confidence            1223467999999886321  1  1222   2345667665555555554432 346677766543211           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.|..-.++.+......+-+.+|..++  +..|++.++
T Consensus       192 -~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrvn~i  227 (294)
T PRK07985        192 -PSPHLLDYAATKAAILNYSRGLAKQVA--EKGIRVNIV  227 (294)
T ss_pred             -CCCCcchhHHHHHHHHHHHHHHHHHHh--HhCcEEEEE
Confidence             223333455554444456667777663  344544444

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.27  E-value=0.0022  Score=60.91  Aligned_cols=110  Identities=13%  Similarity=0.116  Sum_probs=66.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhh----hCCCCEEEEcCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA----LTGMDIVIIPAGV  124 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a----l~~aDiVIi~ag~  124 (358)
                      |.|+||+|++|++++..|...+.. +++++|..........+.......++..   ...++..    +.++|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGIT-DILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCc-eEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence            579999999999999999988842 6788886542111111111000011110   1122222    2489999999986


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      ..............|+.....+++.+.+...  .++++|.
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS  114 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYASS  114 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEcc
Confidence            4322233455678899999999999887653  3555443

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0056  Score=56.87  Aligned_cols=155  Identities=16%  Similarity=0.126  Sum_probs=83.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe----CCCcHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~----~t~d~~~al------  112 (358)
                      +..++.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++.     ..+..+.    ...+.++++      
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~   77 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVAR   77 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  9999998752  11112221     1111111    111222222      


Q ss_pred             -CCCCEEEEcCCCCCCC--CCCH---HhHHHHHHHHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          113 -TGMDIVIIPAGVPRKP--GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                       ...|++|+.+|.....  ..+.   ...+..|+.-...+.+.+..+  .+.+.+++++.-....            +.+
T Consensus        78 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~  145 (261)
T PRK08265         78 FGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF------------AQT  145 (261)
T ss_pred             hCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc------------CCC
Confidence             3679999999864321  1222   223444655444444433322  3456667665432211            223


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..-.++.+......+.+.++..++  +..|++.++-
T Consensus       146 ~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v~  179 (261)
T PRK08265        146 GRWLYPASKAAIRQLTRSMAMDLA--PDGIRVNSVS  179 (261)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhc--ccCEEEEEEc
Confidence            333455544334456677776664  3456554443

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.27  E-value=0.005  Score=56.82  Aligned_cols=152  Identities=18%  Similarity=0.160  Sum_probs=83.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEE-EeCCCcHHhhh-------CCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDAL-------TGMD  116 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~aD  116 (358)
                      .+|.|+||+|.+|.+++..|+..|.  +++++|.+...  ....++....  ..+.. .....+.++++       ...|
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPAA--IAVSLDVTRQDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCce--EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999987  89999987621  1222221110  00110 11111222323       3689


Q ss_pred             EEEEcCCCCCC-C--CCC---HHhHHHHHHHHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018265          117 IVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       117 iVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      ++|+++|.... +  ..+   -...+..|+.-...+.+.+..+    .+.+.+++++......            +.+..
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~~~  150 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR------------GEALV  150 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC------------CCCCC
Confidence            99999886421 1  111   2233566666655555555432    2345666665533211            33444


Q ss_pred             cEEEeeeccHHHHHHHHHHHhCCCCCCCce
Q 018265          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDV  216 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~v~~  216 (358)
                      -.++.+......+.+.++..+.  +..+++
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~~--~~gi~v  178 (257)
T PRK07067        151 SHYCATKAAVISYTQSAALALI--RHGINV  178 (257)
T ss_pred             chhhhhHHHHHHHHHHHHHHhc--ccCeEE
Confidence            4566654444456666776653  344443

>PRK05865 hypothetical protein; Provisional

Probab=97.26  E-value=0.0023  Score=69.36  Aligned_cols=104  Identities=18%  Similarity=0.157  Sum_probs=71.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      |||.|+||+|++|++++..|+..|.  +++.+|.+....    +.. . ...+.. .....++.++++++|+||++|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            6899999999999999999999887  899998753110    110 0 011111 111234567789999999998753


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      ..       ....|+.....+++.+++.+.. .++++|.+.
T Consensus        73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            21       3467888888999988876533 566666654

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.25  E-value=0.004  Score=57.29  Aligned_cols=154  Identities=14%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc---HHhh-------hCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LTGM  115 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l~~a  115 (358)
                      |+|.|+||+|.+|..++..|+..|.  ++++++++....  .++.+.. ...+..+.. -+|   .+++       +.+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i   75 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERL--QELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWRNI   75 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHHh-ccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            6899999999999999999999887  899999875211  1111100 011111111 112   2222       2479


Q ss_pred             CEEEEcCCCCC--CC--CCCH---HhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          116 DIVIIPAGVPR--KP--GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       116 DiVIi~ag~~~--~~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      |+||+.+|...  .+  ..+.   ...+..|+..    .+.+.+.+.+. ..+.++++|......            +++
T Consensus        76 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~------------~~~  142 (248)
T PRK10538         76 DVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGSTAGSW------------PYA  142 (248)
T ss_pred             CEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECCcccCC------------CCC
Confidence            99999988632  11  1122   2334556555    44444444432 234666666533211            233


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ....++.+......+...++..++  +..|++.++.
T Consensus       143 ~~~~Y~~sK~~~~~~~~~l~~~~~--~~~i~v~~v~  176 (248)
T PRK10538        143 GGNVYGATKAFVRQFSLNLRTDLH--GTAVRVTDIE  176 (248)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhc--CCCcEEEEEe
Confidence            334555543333345556666653  4456555443

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.25  E-value=0.011  Score=54.58  Aligned_cols=119  Identities=15%  Similarity=0.116  Sum_probs=69.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCcHH---hh-----
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQLE---DA-----  111 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~~---~a-----  111 (358)
                      ..+.++|.|+||+|.+|++++..|+..|.  .|+++|.+..  .....++....  ..+..+.. -+|.+   ++     
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~   84 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETL   84 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence            34557999999999999999999999887  8999988652  11222232211  12211111 12221   11     


Q ss_pred             --hCCCCEEEEcCCCCCCCC---C---CHHhHHHHHHHHHHHHHHHHHhh----CCCeEEEEecCC
Q 018265          112 --LTGMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNP  165 (358)
Q Consensus       112 --l~~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP  165 (358)
                        +...|.||+++|......   .   .-...+..|+.....+.+.+..+    .+.+.++++|..
T Consensus        85 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~  150 (259)
T PRK08213         85 ERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV  150 (259)
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence              246799999988632111   1   12234567777777777766544    234566666553

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.24  E-value=0.0072  Score=55.24  Aligned_cols=116  Identities=17%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|++|+.++..|+..+.  +++++|.+.  ......++....  ..+..+.. -.|   .++++      
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~   77 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQA   77 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999887  899999875  222223333221  12222111 112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 018265          113 -TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  164 (358)
                       ...|+||+.+|......   .+.   ...+..|+.....+.+.+...   .+...+++++.
T Consensus        78 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss  139 (250)
T TIGR03206        78 LGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIAS  139 (250)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECc
Confidence             35899999988532111   111   223556666665555554321   23345666554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0078  Score=55.91  Aligned_cols=158  Identities=16%  Similarity=0.129  Sum_probs=87.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcHH---hh------
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQLE---DA------  111 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~a------  111 (358)
                      ++.+++.|+||+|++|.+++..|+..|.  +|+++|++.  ......++....  ..+..+. .-++.+   ++      
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   83 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVE   83 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999887  999999875  222223333211  1222211 112321   12      


Q ss_pred             -hCCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 -LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 -l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       +...|+||+.+|.....   ..+   -...+..|......+.+..    .+..+.+.+++++.-....           
T Consensus        84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------  152 (263)
T PRK07814         84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL-----------  152 (263)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-----------
Confidence             23689999998853211   111   2233455655444444444    3334556677766533221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.+....++.+......+...++..+.  + .+.+..+.
T Consensus       153 -~~~~~~~Y~~sK~a~~~~~~~~~~e~~--~-~i~v~~i~  188 (263)
T PRK07814        153 -AGRGFAAYGTAKAALAHYTRLAALDLC--P-RIRVNAIA  188 (263)
T ss_pred             -CCCCCchhHHHHHHHHHHHHHHHHHHC--C-CceEEEEE
Confidence             233344566654344456666777664  2 35554444

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.24  E-value=0.0041  Score=57.39  Aligned_cols=71  Identities=10%  Similarity=0.158  Sum_probs=46.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      |+.+||+|||+ |.+|.+++..+...+.  ..+++.++.+. .....++.+..   .+..   +.|++++++++|+||++
T Consensus         2 m~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViia   73 (245)
T PRK07634          2 LKKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQARY---NVST---TTDWKQHVTSVDTIVLA   73 (245)
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEe
Confidence            35679999998 9999999998887652  33477777532 11122232211   1222   24667889999999998


Q ss_pred             C
Q 018265          122 A  122 (358)
Q Consensus       122 a  122 (358)
                      .
T Consensus        74 v   74 (245)
T PRK07634         74 M   74 (245)
T ss_pred             c
Confidence            4

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.24  E-value=0.013  Score=53.53  Aligned_cols=158  Identities=16%  Similarity=0.166  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc---HH-------hhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LE-------DALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~al~  113 (358)
                      +..+|.|+||+|.+|.+++..|+..|.  ++++++.+........+....  ..+..+.. -+|   .+       +.+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999987  899999765322222232211  11221111 112   21       1224


Q ss_pred             CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHH----hhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|++|+++|......   .+   -.+.+..|+.....+.+.+.    +....+.+++++.-...            .+.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~~  147 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSF------------QGG  147 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhc------------cCC
Confidence            6899999998643211   11   12335566555444554443    33224666665542111            112


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +..-.++.+......+.+.+++.+.  +..|++.++-
T Consensus       148 ~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v~  182 (248)
T TIGR01832       148 IRVPSYTASKHGVAGLTKLLANEWA--AKGINVNAIA  182 (248)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhC--ccCcEEEEEE
Confidence            2223455543333456677777763  4455544433

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.24  E-value=0.0085  Score=54.60  Aligned_cols=118  Identities=17%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CC---cHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQ---QLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al------  112 (358)
                      ++.+|.|+|++|.+|.+++..|+..|.  +|++++++..  .....++...  ...+..+.. -+   ++++++      
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNE   81 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  8999998751  1122233321  122322211 11   222333      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV  166 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  166 (358)
                       .+.|+||+++|.....   +.+.   ...+..|+.-...+.+.+..+   ...+.+++++...
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~  145 (239)
T PRK07666         82 LGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA  145 (239)
T ss_pred             cCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence             3799999998864321   1111   223455655444444444322   2234555555544

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0061  Score=55.57  Aligned_cols=156  Identities=15%  Similarity=0.095  Sum_probs=84.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC----CCcHHhhhC-----
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG----QQQLEDALT-----  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~-----  113 (358)
                      ..+|.|+||+|.+|++++..|+..|.  +++++..+.   ......++....  ..+..+..    ..+++++++     
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA   80 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999987  777776543   112222332211  12222211    112233333     


Q ss_pred             --CCCEEEEcCCCCCCC---C---CCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          114 --GMDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~---g---~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                        +.|+||+.+|.....   .   +.-...+..|+.....+.+.+.+. .+.+.++++|.-...            .+.|
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~------------~~~~  148 (245)
T PRK12937         81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA------------LPLP  148 (245)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc------------CCCC
Confidence              689999999864211   0   112233556666555555554433 245667776543211            1234


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ....++.+......+...+++.++  +..+.+.++
T Consensus       149 ~~~~Y~~sK~a~~~~~~~~a~~~~--~~~i~v~~i  181 (245)
T PRK12937        149 GYGPYAASKAAVEGLVHVLANELR--GRGITVNAV  181 (245)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            444566654443445566666653  334444333

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0032  Score=57.80  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=30.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++|.|+||+|.+|+.++..|+..|.  +|++++++.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999887  899998765

>PRK07680 late competence protein ComER; Validated

Probab=97.21  E-value=0.002  Score=60.80  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=62.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      |||+|||+ |.+|..++..|...+.  ..++.++|++...  ...+.+.  .+.+..   +.+..++++++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~--~~g~~~---~~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKER--YPGIHV---AKTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHH--cCCeEE---ECCHHHHHHhCCEEEEecC-
Confidence            58999998 9999999999988773  2478999986521  1222221  112232   2355677899999999851 


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  167 (358)
                                     -..+.++++.+..+- ++.+|+.++|++.
T Consensus        72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                           122344445554433 5677888888774

>PRK07069 short chain dehydrogenase; Validated

Probab=97.21  E-value=0.016  Score=52.92  Aligned_cols=146  Identities=18%  Similarity=0.171  Sum_probs=81.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--chhHHHHHhcCCCCCeEEE----EeCCCcHHh-------hhC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTNAVVRG----FLGQQQLED-------ALT  113 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~-~--~~g~~~dl~~~~~~~~v~~----~~~t~d~~~-------al~  113 (358)
                      ||.|+||+|.+|.+++..|+..|.  ++++.+.+ .  ......++........+..    .....++++       .+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            589999999999999999998887  89999986 3  2222223322211111111    111111212       234


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|+||+.+|.....   ..+   -...+..|+.    ..+.+.+.+++.. .+.+++++......            +.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss~~~~~------------~~  145 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISSVAAFK------------AE  145 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecChhhcc------------CC
Confidence            689999999864321   111   2234556665    6777777777654 34566655433221            12


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                      +..-.++.+......+.+.+++.+.
T Consensus       146 ~~~~~Y~~sK~a~~~~~~~la~e~~  170 (251)
T PRK07069        146 PDYTAYNASKAAVASLTKSIALDCA  170 (251)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhc
Confidence            2223455544334456667777664

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=97.21  E-value=0.004  Score=58.96  Aligned_cols=167  Identities=17%  Similarity=0.151  Sum_probs=102.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH---HHHHhcCCCCCeEEEEeC-CCcHHhhhC--CCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRGFLG-QQQLEDALT--GMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~-t~d~~~al~--~aDiVIi  120 (358)
                      |++.|+|++||||+++...++.+..-.+|+.+|.-.-.|.   ..++.+.+....+++-.+ .....+.++  +.|.|++
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            5899999999999999998888765457888886552232   334444332223333111 123344555  6899999


Q ss_pred             cCCCCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHH
Q 018265          121 PAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (358)
Q Consensus       121 ~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~  197 (358)
                      .|.-.-  +.=..-..++..|+-....+.++++++...-.++-+ |.-|.---..--..+-..+.+.|+..+.-+.-.+.
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD  160 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD  160 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHH
Confidence            875211  000123568899999999999999999754334433 44332110000000123456777888877665566


Q ss_pred             HHHHHHHHHhCCCCCC
Q 018265          198 RANTFVAEVLGLDPRE  213 (358)
Q Consensus       198 R~~~~lA~~l~v~~~~  213 (358)
                      .|-+.+.+-+|++..-
T Consensus       161 ~lVray~~TYglp~~I  176 (340)
T COG1088         161 LLVRAYVRTYGLPATI  176 (340)
T ss_pred             HHHHHHHHHcCCceEE
Confidence            6788888888986533

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.20  E-value=0.0038  Score=56.86  Aligned_cols=156  Identities=19%  Similarity=0.251  Sum_probs=81.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe--CCCcHHhh-------hC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL--GQQQLEDA-------LT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~--~t~d~~~a-------l~  113 (358)
                      +..++.|+||+|.+|+.++..|+..+.  .+++.+.+.  ......++.   .........  ...+++++       +.
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG---ERVKIFPANLSDRDEVKALGQKAEADLE   79 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC---CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            456999999999999999999999886  778887654  111112221   111111110  01112221       34


Q ss_pred             CCCEEEEcCCCCCCC---C---CCHHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          114 GMDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g---~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      ..|+||+++|.....   .   .+-...+..|+.....+++.+.+.   .+.+.+++++......            +.|
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~  147 (245)
T PRK12936         80 GVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVT------------GNP  147 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCc------------CCC
Confidence            689999999864321   1   112234556666555555544322   2345677766543221            223


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ....++.+......+.+.+++.+.  +..+++..+
T Consensus       148 ~~~~Y~~sk~a~~~~~~~la~~~~--~~~i~v~~i  180 (245)
T PRK12936        148 GQANYCASKAGMIGFSKSLAQEIA--TRNVTVNCV  180 (245)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhh--HhCeEEEEE
Confidence            333455544333445566666653  234444443

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0059  Score=56.27  Aligned_cols=142  Identities=11%  Similarity=0.072  Sum_probs=80.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCcHHhhhC-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALT-------  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~-------  113 (358)
                      +.+++.|+||+|.+|++++..|+..|.  +|+++|++...    ....    ..+..+.    ...+.+++++       
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~   74 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVDG----RPAEFHAADVRDPDQVAALVDAIVERHG   74 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhcC----CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999887  89999986421    0110    1111110    1112333333       


Q ss_pred             CCCEEEEcCCCCCC-C--CCC---HHhHHHHHHHHHHHHHHHHHh----hCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|+||+.+|.... +  ..+   ....+..|+.....+.+.+..    ....+.+|+++.-....            +.
T Consensus        75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~  142 (252)
T PRK07856         75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR------------PS  142 (252)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC------------CC
Confidence            45999999986321 1  111   223455666655555555433    22335677766533221            23


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                      |..-.++.+......+.+.++..++
T Consensus       143 ~~~~~Y~~sK~a~~~l~~~la~e~~  167 (252)
T PRK07856        143 PGTAAYGAAKAGLLNLTRSLAVEWA  167 (252)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhc
Confidence            3334455554444556677777775

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.19  E-value=0.0011  Score=54.86  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=46.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC--CCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~--~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ||+|+||+|.+|..++..|...+.+..+.+++.....|....-...  .....+....  .+ .+.+.++|+||.+.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence            7999999999999999999997766566777765523332211111  1122333321  34 36689999999985

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK09135 pteridine reductase; Provisional

Probab=97.19  E-value=0.0084  Score=54.62  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=81.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  113 (358)
                      .+|.|+||+|++|++++..|+..|.  ++++++...   ......++.+... ..+..+.. -+|   ...+++      
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4899999999999999999999887  899998753   2222233332211 11111111 122   222333      


Q ss_pred             -CCCEEEEcCCCCCC--CC-C---CHHhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          114 -GMDIVIIPAGVPRK--PG-M---TRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       114 -~aDiVIi~ag~~~~--~g-~---~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                       +.|+||+++|....  .. .   .-.+.+..|+.....+.+.+..+-  ..+.++..+.    .        .....++
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~  151 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD----I--------HAERPLK  151 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC----h--------hhcCCCC
Confidence             57999999985321  11 1   123455677766666666654332  1234443322    1        0112344


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhC
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                      +...++.+......+-..+++.++
T Consensus       152 ~~~~Y~~sK~~~~~~~~~l~~~~~  175 (249)
T PRK09135        152 GYPVYCAAKAALEMLTRSLALELA  175 (249)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHC
Confidence            555667766555566667777664

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.18  E-value=0.003  Score=59.11  Aligned_cols=66  Identities=17%  Similarity=0.279  Sum_probs=46.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-eCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~--~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||++||. |.+|+.++..|+..++  ..+|+.+ |++...  ...+...    .+..   ..+..+++++||+||++.
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~----g~~~---~~~~~e~~~~aDvVil~v   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL----GVKT---AASNTEVVKSSDVIILAV   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc----CCEE---eCChHHHHhcCCEEEEEE
Confidence            79999998 9999999999998774  4578888 665422  2223221    1222   234567789999999985

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=97.14  E-value=0.004  Score=59.08  Aligned_cols=110  Identities=19%  Similarity=0.112  Sum_probs=67.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH-HHHHhcCCCCCeEEEEeC----CCcHHhhhC--CCCEEE
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTNAVVRGFLG----QQQLEDALT--GMDIVI  119 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~-~~dl~~~~~~~~v~~~~~----t~d~~~al~--~aDiVI  119 (358)
                      ||.|+||+|++|+.++..|...+.  +++++|.... ... ...+...   ..+..+..    ..+++++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999998887  7888875431 111 1111111   01222111    123344454  689999


Q ss_pred             EcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +++|.....  .....+.+..|+.....+++.+.++... .+++++
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~s  120 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSS  120 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEec
Confidence            999864321  1223445678899999999988876543 344433

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.14  E-value=0.014  Score=53.47  Aligned_cols=120  Identities=18%  Similarity=0.205  Sum_probs=67.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCC-Cc----------H
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQ-QQ----------L  108 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t-~d----------~  108 (358)
                      ..+.++|.|+|++|++|.+++..|+..|.  +|+++|++.  ......++.+... ...+.....+ .+          +
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI   86 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence            34567999999999999999999998887  999999876  2233344443221 1111111110 01          1


Q ss_pred             HhhhCCCCEEEEcCCCCCC--C--CCCH---HhHHHHHHHHHHHHHHHHHh---hCCCeEEEEecC
Q 018265          109 EDALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAK---CCPKAIVNLISN  164 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tN  164 (358)
                      .+.+...|+||+.+|....  +  ..+.   ...+..|+.....+.+.+..   ..+...+++++.
T Consensus        87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss  152 (247)
T PRK08945         87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS  152 (247)
T ss_pred             HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence            2333468999999886321  1  2222   23355666554444444432   224455666554

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.017  Score=54.97  Aligned_cols=157  Identities=13%  Similarity=0.136  Sum_probs=82.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCcHHhhh-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDAL-----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al-----  112 (358)
                      ++.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+..    ..+.++++     
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~  113 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEK  113 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999887  999999875  222222232211  11111111    11222333     


Q ss_pred             --CCCCEEEEcCCCCCCC--CC---CH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          113 --TGMDIVIIPAGVPRKP--GM---TR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~--g~---~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                        ...|+||+++|.....  .+   +.   ...+..|.-    +.+.+.+.+.+.. .+.+++++.-. ..        .
T Consensus       114 ~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~-~~--------~  183 (293)
T PRK05866        114 RIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERG-DGHIINVATWG-VL--------S  183 (293)
T ss_pred             HcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChh-hc--------C
Confidence              3789999999864211  11   11   123444543    3445555555443 35566655411 10        0


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                        ...|..-.++.+......+...++..+.  ...|++.+
T Consensus       184 --~~~p~~~~Y~asKaal~~l~~~la~e~~--~~gI~v~~  219 (293)
T PRK05866        184 --EASPLFSVYNASKAALSAVSRVIETEWG--DRGVHSTT  219 (293)
T ss_pred             --CCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCcEEEE
Confidence              0123233455544444455666666653  33454433

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0038  Score=57.21  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-----  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-----  112 (358)
                      +.++|.|+||+|++|.+++..|+..|.  ++++++++..   .....++....  ..+..+. .-+|   .+.++     
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   80 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE   80 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999998887  8888877541   11222333211  1122111 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 018265          113 --TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  164 (358)
                        .+.|+||+.+|............+..|......+++.+.++. ..+.++++|.
T Consensus        81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence              368999998875322111122334456666666666666553 2456666654

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0068  Score=56.49  Aligned_cols=147  Identities=16%  Similarity=0.125  Sum_probs=79.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCcHHhhh-------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLEDAL-------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al-------  112 (358)
                      ..+|.|+||+|.+|+.++..|+..|.  .|+++|++.  ......++....  ..+..+.    ...+.+.++       
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998887  899999865  222222333211  1111111    111222222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      ...|+||+.+|.....   ..+.   ...+..|......+.+....+  .+++.+++++......            +.|
T Consensus        85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~------------~~~  152 (264)
T PRK07576         85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV------------PMP  152 (264)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc------------CCC
Confidence            3569999988753211   1122   223445655555555444332  1346777776654221            122


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhC
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                      ..-.++.+.....++-..++..+.
T Consensus       153 ~~~~Y~asK~a~~~l~~~la~e~~  176 (264)
T PRK07576        153 MQAHVCAAKAGVDMLTRTLALEWG  176 (264)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhh
Confidence            233344444334456666666654

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.13  E-value=0.0034  Score=58.84  Aligned_cols=96  Identities=14%  Similarity=0.175  Sum_probs=60.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      +|||+|||+ |.+|..++..+...+. ..++.++|++...  ...+.+..   .+..   +.+..+.+.+||+||++.- 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence            479999998 9999999999988763 2378999986521  12222210   1121   2355677899999999841 


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                                     ...+.++++.+..+. +..|+..+|-+.
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           123445555554443 456666677653

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.026  Score=52.07  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=85.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al------  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++........+..+.. -+   +..+++      
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  899999876  2223333432111112222111 11   222333      


Q ss_pred             -CCCCEEEEcCCCCCCC--C-CCH---HhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKP--G-MTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~--g-~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.+|.....  . .+.   ...+..|+...    +...+.+.+. ..+.|++++......            
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------  150 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIASTHAFK------------  150 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECChhhcc------------
Confidence             3689999999864211  1 111   22344455444    4444444433 346677665432111            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.++.+...-..+.+.+++.+.  +..|++..+-
T Consensus       151 ~~~~~~~Y~~sKaa~~~~~~~la~el~--~~gIrvn~v~  187 (260)
T PRK07063        151 IIPGCFPYPVAKHGLLGLTRALGIEYA--ARNVRVNAIA  187 (260)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence            122223344444333456677777763  4456554443

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.12  E-value=0.0097  Score=59.52  Aligned_cols=131  Identities=19%  Similarity=0.206  Sum_probs=71.0

Q ss_pred             hcCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCC
Q 018265           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA   97 (358)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~   97 (358)
                      |++|.+-...|--.++.+..-++. ..+.++|.|+||+|.+|++++..|+..|.  +++++|.+... ....+.......
T Consensus       151 ~~~~~~~~~~~~~~~~d~~~~ta~-sl~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~~v  226 (406)
T PRK07424        151 HFDNQNAYYCGTFTLVDKLMGTAL-SLKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDLPV  226 (406)
T ss_pred             EeccccceeeeeEEEeehhcCccc-CCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCCCe
Confidence            344543344433334444332322 23456899999999999999999999887  88999876521 111121111111


Q ss_pred             e-EEE-EeCCCcHHhhhCCCCEEEEcCCCCCCCCCCH---HhHHHHHHHH----HHHHHHHHHh
Q 018265           98 V-VRG-FLGQQQLEDALTGMDIVIIPAGVPRKPGMTR---DDLFNINAGI----VKTLCEGIAK  152 (358)
Q Consensus        98 ~-v~~-~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r---~~~~~~N~~i----~~~i~~~i~~  152 (358)
                      . +.. .....+..+.+.+.|++|+.+|.......+.   .+.+..|...    ++.+.+.+++
T Consensus       227 ~~v~~Dvsd~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~  290 (406)
T PRK07424        227 KTLHWQVGQEAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT  290 (406)
T ss_pred             EEEEeeCCCHHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1 111 1111234455788999999988653322222   2344556554    4444444544

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.013  Score=53.45  Aligned_cols=117  Identities=15%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCcH---Hhhh-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDAL-----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-----  112 (358)
                      ++.++|.|+||+|.+|+.++..|+..|.  ++++++.+..  .....++....  ..+..+.. -+|.   ++++     
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   80 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAA   80 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999887  8899987652  22223343221  12222111 1221   1222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 018265          113 --TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  164 (358)
                        .+.|+||+++|.....   ..+.   ...+..|..-...+.+.+..+   ...+.+++++.
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         81 ALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence              4789999998864321   1121   222445665555555554432   22456776655

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.12  E-value=0.0097  Score=55.01  Aligned_cols=157  Identities=17%  Similarity=0.204  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCcHHhhh-------C
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDAL-------T  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al-------~  113 (358)
                      +..++.|+||+|.+|..++..|+..|.  +|++++.+........+....  .++..+.    ...+.++++       .
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   82 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG   82 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999988  889988754222222222211  1222111    111222222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|++|+.+|.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.||+++......            +.
T Consensus        83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~  150 (251)
T PRK12481         83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ------------GG  150 (251)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC------------CC
Confidence            579999999864321   1111   223445544    3455555554443346777765543221            12


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +..-.|+.+......+-+.+|..+.  +..|++..+
T Consensus       151 ~~~~~Y~asK~a~~~l~~~la~e~~--~~girvn~v  184 (251)
T PRK12481        151 IRVPSYTASKSAVMGLTRALATELS--QYNINVNAI  184 (251)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            2223466655445566777777663  345554444

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0058  Score=55.23  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEE--eCCCcHHhhh-------C
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF--LGQQQLEDAL-------T  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~--~~t~d~~~al-------~  113 (358)
                      +.++|.|+||+|.+|+.++..|++.|.  +++++|++...  ....++....  ..+...  ....++++++       .
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADA--LRIGGIDLVDPQAARRAVDEVNRQFG   81 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcC--ceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            345899999999999999999999887  89999987621  1222332211  111111  1111222223       3


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 018265          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  164 (358)
                      ..|+||+.+|.....   ..+.   .+.+..|......+++.+.++   .+...+++++.
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (239)
T PRK12828         82 RLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA  141 (239)
T ss_pred             CcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            689999998753211   1111   223445555555555544321   23445666554

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.029  Score=52.37  Aligned_cols=155  Identities=17%  Similarity=0.153  Sum_probs=81.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCcH----------HhhhC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQL----------EDALT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~----------~~al~  113 (358)
                      +++.|+||+|.+|..++..|+..|.  .+++++++.  ......++....... ..... .-+|.          .+.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~~~~   77 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRAL-DISDYDAVAAFAADIHAAHG   77 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEe-eCCCHHHHHHHHHHHHHhcC
Confidence            3799999999999999999998886  899999865  222223333221111 10111 01121          12234


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|+||+.+|.....   ..+.   ...+..|+.....+++.    +.+....+.+++++......            +.
T Consensus        78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~~  145 (272)
T PRK07832         78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV------------AL  145 (272)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC------------CC
Confidence            689999999864321   1121   23345565544444444    33323346677766544221            22


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                      |..-.++.+......+...++..+.  ..+|++.+
T Consensus       146 ~~~~~Y~~sK~a~~~~~~~l~~e~~--~~~i~v~~  178 (272)
T PRK07832        146 PWHAAYSASKFGLRGLSEVLRFDLA--RHGIGVSV  178 (272)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhh--hcCcEEEE
Confidence            3233455544333345566665543  34454443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.10  E-value=0.0057  Score=55.23  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~   81 (358)
                      +..||+|+|+ |.+|+.++..|+..|+ .+++|+|.+
T Consensus        20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            3458999998 9999999999999886 489999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06128 oxidoreductase; Provisional

Probab=97.10  E-value=0.015  Score=55.34  Aligned_cols=156  Identities=19%  Similarity=0.176  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHHHHhcCCCCCeEEEEe-CCCc---HHhh-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-----  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~----~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-----  111 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  ++++.+.+..    ......+....  ..+..+. .-+|   .+++     
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~  129 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAV  129 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence            346899999999999999999999887  7888765431    11222232221  1111111 1112   2222     


Q ss_pred             --hCCCCEEEEcCCCCC--CC--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          112 --LTGMDIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       112 --l~~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        +...|++|+.+|...  .+  ..+   -...+..|+.....+++.+..+- +.+.||+++.-....            
T Consensus       130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~------------  197 (300)
T PRK06128        130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQ------------  197 (300)
T ss_pred             HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccC------------
Confidence              346899999998642  11  112   23456777776777777766543 345666665433211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                      +.+..-.++.+......+.+.+++.+.  +..|++.+
T Consensus       198 ~~~~~~~Y~asK~a~~~~~~~la~el~--~~gI~v~~  232 (300)
T PRK06128        198 PSPTLLDYASTKAAIVAFTKALAKQVA--EKGIRVNA  232 (300)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhh--hcCcEEEE
Confidence            122222344544444456677777663  34454433

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.015  Score=53.38  Aligned_cols=118  Identities=15%  Similarity=0.112  Sum_probs=67.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhh-----
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-----  111 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-----  111 (358)
                      +++.++|.|+||+|.+|++++..|+.+|.  +|+++|++.  ......++....  ..+..+. .-+|   ++.+     
T Consensus         2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~   77 (258)
T PRK07890          2 LLKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALAL   77 (258)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHH
Confidence            34557999999999999999999999987  899999875  222223332211  1111111 1122   2222     


Q ss_pred             --hCCCCEEEEcCCCCCC--C--CCCH---HhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 018265          112 --LTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (358)
Q Consensus       112 --l~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  164 (358)
                        +...|+||+.+|....  +  ..+.   ...+..|+.-...+.+.+..+-  ....+|+++.
T Consensus        78 ~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         78 ERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             HHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence              2468999999986321  1  1222   2334556655555555554321  1246666654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.09  E-value=0.00068  Score=56.74  Aligned_cols=102  Identities=20%  Similarity=0.240  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      ..+||+|||+ |.||.+++..|...++  +|.-+-... ......+....  +....    .++++.+++||++|++.. 
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iavp-   77 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAVP-   77 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S--
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEec-
Confidence            4689999998 9999999999999987  666664332 22222233221  11111    235678999999999852 


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhh--C-CCeEEEEe--cCCCCccHHH
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC--C-PKAIVNLI--SNPVNSTVPI  172 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~-p~a~viv~--tNP~d~~t~~  172 (358)
                          +           ..+.+++++|..+  . |+.+|+=.  +-+++++.++
T Consensus        78 ----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   78 ----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             ----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred             ----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence                1           2466778888776  2 45444433  3667777653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0061  Score=56.04  Aligned_cols=114  Identities=21%  Similarity=0.296  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  112 (358)
                      +..+|.|+||+|.+|++++..|++.|.  ++++++++.. .....++...    .+..+. .-+|   .++++       
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~----~~~~~~~Dl~~~~~~~~~~~~~~~~~   87 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLGG----NAKGLVCDVSDSQSVEAAVAAVISAF   87 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhCC----ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            445899999999999999999999887  8999998652 1122222211    111110 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---CCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 018265          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  164 (358)
                      ...|+||+++|......   .+.   ...+..|+.-...+.+.+..+   ...+.++++|.
T Consensus        88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  148 (255)
T PRK06841         88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS  148 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            36799999998643111   111   224556666555555555433   22456666554

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.023  Score=52.18  Aligned_cols=157  Identities=17%  Similarity=0.166  Sum_probs=82.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~----  113 (358)
                      +.++|.|+||+|.+|++++..|+..|.  ++++.. .+.  ......++....  ..+..+. .-+|   ..++++    
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~   80 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKN   80 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHH
Confidence            346999999999999999999998886  776653 332  111222232111  1111111 1122   222222    


Q ss_pred             ---------CCCEEEEcCCCCCCCC---CCH---HhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHH
Q 018265          114 ---------GMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       114 ---------~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                               +.|+||+++|......   .+.   ...+..|+.....+.+.+.++. ..+.++++|.....         
T Consensus        81 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~---------  151 (254)
T PRK12746         81 ELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVR---------  151 (254)
T ss_pred             HhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhc---------
Confidence                     5899999998643211   111   2334567776666666665543 23455555443211         


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                         .+.+..-.++.+......+...+++.++  +..+++..+
T Consensus       152 ---~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~v  188 (254)
T PRK12746        152 ---LGFTGSIAYGLSKGALNTMTLPLAKHLG--ERGITVNTI  188 (254)
T ss_pred             ---CCCCCCcchHhhHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence               1233333456655444455666776654  334544333

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0079  Score=56.46  Aligned_cols=112  Identities=10%  Similarity=0.065  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhC--------CCCE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT--------GMDI  117 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~--------~aDi  117 (358)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.+++...  ..++..... ..+.. .+...+.+.+++        ..|+
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~--~~~l~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEED--VAALEAEGL-EAFQLDYAEPESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHCCc-eEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence            3799999999999999999999887  89999986521  112222110 01110 000111222222        4699


Q ss_pred             EEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 018265          118 VIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       118 VIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      ||+.+|.....   ..+   -...+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS  135 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS  135 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence            99998864321   111   12345566554    566666666543 345666654

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.015  Score=55.20  Aligned_cols=120  Identities=15%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeC-CC---cHHhhh--
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQ---QLEDAL--  112 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al--  112 (358)
                      ...+.++|.|+||+|.+|++++..|+..|.  ++++++.+..   ......+...  ...+..+.. -+   ++++++  
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~  117 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEE  117 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHH
Confidence            344557899999999999999999999887  8999988651   1222223211  112222111 11   222222  


Q ss_pred             -----CCCCEEEEcCCCCCC--C--CCC---HHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCC
Q 018265          113 -----TGMDIVIIPAGVPRK--P--GMT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNP  165 (358)
Q Consensus       113 -----~~aDiVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP  165 (358)
                           ...|+||+.+|....  +  ..+   -...+..|+.....+.+.+..+ .+.+.+|++|.-
T Consensus       118 i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~  183 (290)
T PRK06701        118 TVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI  183 (290)
T ss_pred             HHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence                 357999999886321  1  111   1334677777777777777654 345566666553

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.06  E-value=0.0035  Score=61.67  Aligned_cols=68  Identities=18%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .||+|||. |.+|.+++..|...++  ++.++|.+........-.....   ...  .++++++++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---IDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Ccc--cccCHHHHhcCCCEEEEeC
Confidence            37999998 9999999999999887  7788887762211111111110   111  1346778899999999985

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.06  E-value=0.0065  Score=55.98  Aligned_cols=117  Identities=14%  Similarity=0.174  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCcHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al------  112 (358)
                      +.++|.|+||+|.+|+.++..|+..|.  .|+++|++.  ......++....  ..+..+.    ...++..++      
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999998887  899999875  222233343221  1121111    111222223      


Q ss_pred             -CCCCEEEEcCCCCCC-C--CCCH---HhHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCCC
Q 018265          113 -TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP~  166 (358)
                       ...|+||+.+|.... +  ..+.   ...+..|+.-...+.    +.+.+. ..+.+++++...
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~ss~~  149 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ-GYGRIIAITSIA  149 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEeech
Confidence             245899999886421 1  1111   223556655445555    444333 345677766544

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.06  E-value=0.03  Score=51.42  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++|.|+||+|++|++++..|+..|.  +++++|.+.
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            3699999999999999999999887  899999754

>PLN02256 arogenate dehydrogenase

Probab=97.06  E-value=0.0059  Score=58.74  Aligned_cols=68  Identities=19%  Similarity=0.221  Sum_probs=47.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh-CCCCEEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVII  120 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi  120 (358)
                      +..+.+||+|||. |.+|..++..+...|.  +|..+|.+.....+.++   .    +..   .+|.++.+ .++|+||+
T Consensus        32 ~~~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~---~~~~~e~~~~~aDvVil   98 (304)
T PLN02256         32 EKSRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSF---FRDPDDFCEEHPDVVLL   98 (304)
T ss_pred             ccCCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Cee---eCCHHHHhhCCCCEEEE
Confidence            4446679999998 9999999999988775  89999987522112211   1    111   23555655 47999999


Q ss_pred             cC
Q 018265          121 PA  122 (358)
Q Consensus       121 ~a  122 (358)
                      +.
T Consensus        99 av  100 (304)
T PLN02256         99 CT  100 (304)
T ss_pred             ec
Confidence            85

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.016  Score=53.91  Aligned_cols=114  Identities=18%  Similarity=0.130  Sum_probs=64.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCcH---Hhhh-------C
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDAL-------T  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------~  113 (358)
                      ++|.|+||+|.+|+.++..|+..|.  .+++.|++..  .....++....  ..+..+. .-+|.   ++++       .
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999887  8999997652  22223333221  1121111 11222   2222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 018265          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      ..|+||+.+|.....   ..+.   ...+..|..    +.+.+.+.+++.. .+.++++|.-
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~  137 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASM  137 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            689999998864321   1111   123455543    4444555555543 3456665543

>PRK08589 short chain dehydrogenase; Validated

Probab=97.05  E-value=0.014  Score=54.67  Aligned_cols=155  Identities=14%  Similarity=0.163  Sum_probs=84.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCc---HHhh-------h
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l  112 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++++++. ......++.+..  ..+..+. .-+|   .+++       +
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF   80 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            445899999999999999999999887  899999874 222233343221  1111111 0112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC----CCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 TGMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g----~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      ...|++|+.+|.....+    .+.   ...+..|+.    +.+.+.+.+.+.  .+.|++++......            
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~------------  146 (272)
T PRK08589         81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFSGQA------------  146 (272)
T ss_pred             CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchhhcC------------
Confidence            35799999998743211    111   122334443    445555555443  36777776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.+..-.++.+...-..+.+.+|..++  +..|++.++
T Consensus       147 ~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v~~v  182 (272)
T PRK08589        147 ADLYRSGYNAAKGAVINFTKSIAIEYG--RDGIRANAI  182 (272)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            122222344444334456677777764  345554443

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.05  E-value=0.0076  Score=64.02  Aligned_cols=92  Identities=20%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh--CCCCEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVI  119 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--~~aDiVI  119 (358)
                      ...+.|||.|+||+|++|++++..|...+.  ++... .       .|+.+.            ..+...+  .+.|+||
T Consensus       376 ~~~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~------------~~v~~~i~~~~pd~Vi  433 (668)
T PLN02260        376 PGKPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDR------------SSLLADIRNVKPTHVF  433 (668)
T ss_pred             CCCCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccH------------HHHHHHHHhhCCCEEE
Confidence            344568999999999999999999988775  54211 0       011110            0011222  2789999


Q ss_pred             EcCCCCCCC--C---CCHHhHHHHHHHHHHHHHHHHHhhCC
Q 018265          120 IPAGVPRKP--G---MTRDDLFNINAGIVKTLCEGIAKCCP  155 (358)
Q Consensus       120 i~ag~~~~~--g---~~r~~~~~~N~~i~~~i~~~i~~~~p  155 (358)
                      ++|+....+  +   ....+....|+.....+++..++...
T Consensus       434 h~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~  474 (668)
T PLN02260        434 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL  474 (668)
T ss_pred             ECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence            999864321  1   23456678899999999999998754

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.05  E-value=0.0073  Score=57.15  Aligned_cols=71  Identities=15%  Similarity=0.210  Sum_probs=48.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      |..|||+|||+ |.+|.+++..|+..+.  ..+|..+|++.. ....++....   .++.   +.+..+++++||+||++
T Consensus         1 ~~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVila   72 (279)
T PRK07679          1 MSIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKG---THNKKELLTDANILFLA   72 (279)
T ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEE
Confidence            34589999998 9999999999988762  347888887531 1222332211   1222   23556778999999998


Q ss_pred             C
Q 018265          122 A  122 (358)
Q Consensus       122 a  122 (358)
                      .
T Consensus        73 v   73 (279)
T PRK07679         73 M   73 (279)
T ss_pred             e
Confidence            4

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.011  Score=53.99  Aligned_cols=143  Identities=15%  Similarity=0.133  Sum_probs=78.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCcH----------Hhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al  112 (358)
                      ..+|.|+||+|.+|++++..|+..|.  ++++++++..  .....++   .  ..+..+. .-+|.          .+.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAEL---G--ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999887  8999988651  1111111   1  1111111 11221          1223


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      ...|+||+.+|.....   ..+.   ...+..|+.....+.+.+..+- ..+.+++++......            +.|.
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~------------~~~~  146 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHI------------GMPN  146 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhcc------------CCCC
Confidence            4689999998864321   1111   2345677776777777666431 123445444322111            2333


Q ss_pred             CcEEEeeeccHHHHHHHHHHHh
Q 018265          186 KRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l  207 (358)
                      ...++.+......+-+.+++.+
T Consensus       147 ~~~Y~~sK~a~~~~~~~la~e~  168 (249)
T PRK06500        147 SSVYAASKAALLSLAKTLSGEL  168 (249)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh
Confidence            3445554433344555666655

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.04  E-value=0.0036  Score=59.59  Aligned_cols=64  Identities=19%  Similarity=0.274  Sum_probs=46.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||. |.+|+.++..+...+.  ++.++|++....  ..+....    +..   ..++++++++||+||++.
T Consensus         3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITML   66 (296)
T ss_pred             ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            68999998 9999999999998887  899999875221  1122111    111   245678889999999984

>PLN02996 fatty acyl-CoA reductase

Probab=97.04  E-value=0.01  Score=60.81  Aligned_cols=111  Identities=19%  Similarity=0.114  Sum_probs=69.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCc--hhH---HHHHhcCC------------C----CCeE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGV---TADISHMD------------T----NAVV   99 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~--~g~---~~dl~~~~------------~----~~~v   99 (358)
                      .+-+.+.|.|+||+||+|++++..|+.. .-...|.++.+...  ...   ..++.+..            .    ..++
T Consensus         7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv   86 (491)
T PLN02996          7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV   86 (491)
T ss_pred             HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence            4456678999999999999999988764 33456776665431  110   01111100            0    1233


Q ss_pred             EEEeCCC----------c-HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh
Q 018265          100 RGFLGQQ----------Q-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC  153 (358)
Q Consensus       100 ~~~~~t~----------d-~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~  153 (358)
                      ..+.+.-          + ++++++++|+||++|+... ...........|+....++.+...+.
T Consensus        87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~  150 (491)
T PLN02996         87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC  150 (491)
T ss_pred             EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            3332221          1 3456789999999987643 22344556788999999999988764

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=97.03  E-value=0.0097  Score=53.86  Aligned_cols=156  Identities=17%  Similarity=0.198  Sum_probs=83.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEE--eCCCcHHhhh-------CCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGF--LGQQQLEDAL-------TGMD  116 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~--~~t~d~~~al-------~~aD  116 (358)
                      |.|+|++|.+|+.++..|+++|.  ++++++.+.   ......++.+..........  +...++++++       ...|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID   78 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            47999999999999999999887  889998754   12222334322211111111  1111222333       3469


Q ss_pred             EEEEcCCCCCCC---C---CCHHhHHHHHHHHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          117 IVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       117 iVIi~ag~~~~~---g---~~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      +||+.+|.....   +   ......+..|......+.+.+..+.   ..+.+++++......            +.|..-
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~------------g~~~~~  146 (239)
T TIGR01830        79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLM------------GNAGQA  146 (239)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccC------------CCCCCc
Confidence            999998864211   1   1123456677777777777665542   234666665543222            233333


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .++.+......+...+++.++  ...+.+.++.
T Consensus       147 ~y~~~k~a~~~~~~~l~~~~~--~~g~~~~~i~  177 (239)
T TIGR01830       147 NYAASKAGVIGFTKSLAKELA--SRNITVNAVA  177 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHh--hcCeEEEEEE
Confidence            455544333345556666653  2344444443

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0087  Score=55.35  Aligned_cols=152  Identities=18%  Similarity=0.143  Sum_probs=80.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-------  113 (358)
                      ++|.|+||+|.+|..++..|++.|.  +|+++|++.  ......++...   .++..+.. -+|   ..++++       
T Consensus         3 ~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g   77 (257)
T PRK07024          3 LKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHG   77 (257)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999887  899999875  11111222111   12222211 122   222222       


Q ss_pred             CCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 GMDIVIIPAGVPRKPG----MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ..|++|+.+|......    .+   -...+..|+.-.    +.+.+.+.+.. .+.+++++.-...            .+
T Consensus        78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~-~~~iv~isS~~~~------------~~  144 (257)
T PRK07024         78 LPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR-RGTLVGIASVAGV------------RG  144 (257)
T ss_pred             CCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC-CCEEEEEechhhc------------CC
Confidence            3699999988643211    11   122344454433    34455665543 3556655542211            12


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                      .|..-.++.+......+...++..+.  ...+++.+
T Consensus       145 ~~~~~~Y~asK~a~~~~~~~l~~e~~--~~gi~v~~  178 (257)
T PRK07024        145 LPGAGAYSASKAAAIKYLESLRVELR--PAGVRVVT  178 (257)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhh--ccCcEEEE
Confidence            34334455554444456666665553  23454433

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.015  Score=54.00  Aligned_cols=111  Identities=16%  Similarity=0.137  Sum_probs=62.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhC-------CCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT-------GMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~-------~aDiV  118 (358)
                      .+|.|+||+|.+|++++..|+..|.  +|++.+++......  ..+.   ..+.. .....+++++++       ..|+|
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~---~~~~~D~~d~~~~~~~~~~~~~~~g~~d~l   77 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGV---ELLELDVTDDASVQAAVDEVIARAGRIDVL   77 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCC---eeEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence            4799999999999999999999887  89999986411100  0110   00111 111123334443       46999


Q ss_pred             EEcCCCCCCCC---CC---HHhHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCC
Q 018265          119 IIPAGVPRKPG---MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       119 Ii~ag~~~~~g---~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP  165 (358)
                      |+++|......   .+   -...+..|..-...+.    +.+++.. .+.|++++..
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  133 (270)
T PRK06179         78 VNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSV  133 (270)
T ss_pred             EECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCc
Confidence            99998753211   11   2334455554444444    4444443 3456666553

>PLN02712 arogenate dehydrogenase

Probab=97.01  E-value=0.0059  Score=64.82  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=48.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh-CCCCEEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVII  120 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi  120 (358)
                      ++.+++||+|||. |.+|..++..|...|.  +|..+|.+.....+.++   .    +..   .+|+++.+ ++||+||+
T Consensus        48 ~~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~---~~d~~e~~~~~aDvViL  114 (667)
T PLN02712         48 DNTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSF---FLDPHDLCERHPDVILL  114 (667)
T ss_pred             ccCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEE---eCCHHHHhhcCCCEEEE
Confidence            6777899999998 9999999999998886  89999986422111111   1    111   23555644 57999999


Q ss_pred             cC
Q 018265          121 PA  122 (358)
Q Consensus       121 ~a  122 (358)
                      +.
T Consensus       115 av  116 (667)
T PLN02712        115 CT  116 (667)
T ss_pred             cC
Confidence            84

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.011  Score=54.76  Aligned_cols=116  Identities=16%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCcH---Hhhh-------C
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDAL-------T  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------~  113 (358)
                      ++|.|+||+|.+|+.++..|+..+.  +++++|++..  .....++....  ..+..+.. -+|.   .+++       .
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998887  8999998752  22222333221  12222111 1222   2222       3


Q ss_pred             CCCEEEEcCCCCCCCC---C-CH---HhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCCC
Q 018265          114 GMDIVIIPAGVPRKPG---M-TR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPV  166 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~-~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~  166 (358)
                      +.|+||+++|......   . +.   ...+..|+.....+.+....+.  ..+.+++++...
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~  139 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA  139 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence            6799999988643211   1 11   2235566666555555554321  235566665543

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.01  E-value=0.006  Score=58.40  Aligned_cols=95  Identities=19%  Similarity=0.212  Sum_probs=59.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||+|||. |.+|++++..|...+.  +|.++|++...  +..+.....    .......++.++++++|+||++.-.  
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~vp~--   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMVPH--   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEcCc--
Confidence            68999998 9999999999999887  89999987522  222222111    0111112334456789999998311  


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  166 (358)
                                    ..++++++.+.... ++.+||..+|..
T Consensus        70 --------------~~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 --------------GIVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             --------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          13344444554443 566777776654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.01  E-value=0.0051  Score=56.90  Aligned_cols=108  Identities=17%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe--CC---CcHHhhh-CCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQ---QQLEDAL-TGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~t---~d~~~al-~~aDiVI  119 (358)
                      ++||+|+||+|++|+.++..|+..+.  +|+.+.++....... +..   ...+..+.  .+   .++.+++ .++|+||
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~---~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi   90 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ---DPSLQIVRADVTEGSDKLVEAIGDDSDAVI   90 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc---CCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence            57999999999999999999998887  777776543111111 111   11122111  11   2344566 6899999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  162 (358)
                      +++|.....+.  ...+..|......+++.+.+.... .++++
T Consensus        91 ~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~i  130 (251)
T PLN00141         91 CATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILV  130 (251)
T ss_pred             ECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence            98875422111  111233444566677777665433 44444

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.024  Score=51.82  Aligned_cols=155  Identities=16%  Similarity=0.174  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEE-eCCCcHH---h-------h
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQLE---D-------A  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~-~~t~d~~---~-------a  111 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +++++|++..  .....++.+..  ..+..+ ..-+|.+   +       .
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSA   80 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  8999998751  22222232211  111111 1112321   1       1


Q ss_pred             hCCCCEEEEcCCCCC----CC--CCCH---HhHHHHHHHHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHH
Q 018265          112 LTGMDIVIIPAGVPR----KP--GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       112 l~~aDiVIi~ag~~~----~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      +...|+||+++|...    ++  ..+.   .+.+..|+.....+.+.+..+.   ..+.+++++.-..            
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~------------  148 (250)
T PRK07774         81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAA------------  148 (250)
T ss_pred             hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccc------------
Confidence            236899999998632    11  1121   2234566665555555555432   2346666553211            


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                         +++...++.+......+...+++.+.  ...+.+.++.
T Consensus       149 ---~~~~~~Y~~sK~a~~~~~~~l~~~~~--~~~i~v~~v~  184 (250)
T PRK07774        149 ---WLYSNFYGLAKVGLNGLTQQLARELG--GMNIRVNAIA  184 (250)
T ss_pred             ---cCCccccHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence               12223455554444456666676664  3445554443

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.99  E-value=0.0036  Score=59.57  Aligned_cols=63  Identities=14%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ||+|||. |.+|+.++..|+..|.  +|.++|++...  ...+.....    .   ..++.++++++||+||++.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~---~~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----V---TAETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----c---ccCCHHHHHhcCCEEEEec
Confidence            6999998 9999999999998887  99999987521  122222211    1   1235678899999999984

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.99  E-value=0.00083  Score=63.88  Aligned_cols=98  Identities=23%  Similarity=0.268  Sum_probs=59.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||.|+||+|++|+++...+...++  +++.++...     .|+.+...   +      .++-+. .+.|+||++|+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~~---~------~~~~~~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPEA---V------AKLLEA-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHHH---H------HHHHHH-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHHH---H------HHHHHH-hCCCeEeccceeec
Confidence            7999999999999999999998776  788886542     22222110   0      011122 25899999987642


Q ss_pred             CC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          127 KP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       127 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ..  ..........|......+++...+.  ++.+|.+|
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S  100 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS  100 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence            11  1234556678999999999999875  45666553

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.98  E-value=0.011  Score=53.63  Aligned_cols=36  Identities=28%  Similarity=0.466  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.++|+|+||+|.+|..++..|+..|.  ++.+++++.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~   39 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE   39 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            346899999999999999999999887  799999875

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.97  E-value=0.0032  Score=59.95  Aligned_cols=75  Identities=23%  Similarity=0.319  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc-
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP-  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~-  121 (358)
                      +..||+|+|+ |.+|++++..|...+. .+|.++|++.  +++.+.++.+..  +..... ...+++++++++|+||.+ 
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~-~~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF--PAARAT-AGSDLAAALAAADGLVHAT  200 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC--CCeEEE-eccchHhhhCCCCEEEECC
Confidence            4468999998 9999999999998874 4899999986  344445554332  222222 123455678999999997 


Q ss_pred             -CCC
Q 018265          122 -AGV  124 (358)
Q Consensus       122 -ag~  124 (358)
                       +|+
T Consensus       201 p~Gm  204 (284)
T PRK12549        201 PTGM  204 (284)
T ss_pred             cCCC
Confidence             454

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.96  E-value=0.0065  Score=56.38  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..++.|+||+|.+|++++..|+..|.  +|+++|++.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999987  899999865

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0096  Score=55.70  Aligned_cols=111  Identities=14%  Similarity=-0.011  Sum_probs=61.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc---HHhh-------hCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LTGM  115 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l~~a  115 (358)
                      ++|.|+||+|.+|++++..|+..|.  +|++.+.+....  .++.+... ..+..+.. -+|   .+++       +...
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKYG-DRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhcc-CCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999998886  899999765211  11111100 11111100 112   1122       2467


Q ss_pred             CEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEec
Q 018265          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       116 DiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~t  163 (358)
                      |.||+++|.....   ..+   -...+..|+..    .+.+.+.+++... ..+++++
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vs  135 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRS-GHIIQIS  135 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEc
Confidence            9999999865321   111   22334556554    4555555555443 3455554

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.94  E-value=0.029  Score=51.29  Aligned_cols=115  Identities=15%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      ..++.|+||+|.+|++++..|+..+.  ++++.+...   ......++.+..  .++..+.. -+|   +.+++      
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998886  776655432   122223333221  22222211 122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC------CCHHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 018265          113 -TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  164 (358)
                       ...|+||+++|......      +.-.+.+..|......+.+.+..+   ...+.+++++.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence             34799999998643211      112334566766655555555433   23456666654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.94  E-value=0.037  Score=50.62  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++|.|+||+|++|+.++..|+..|.  ++++++++.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~   35 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE   35 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3799999999999999999998887  899999875

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.94  E-value=0.015  Score=53.56  Aligned_cols=115  Identities=20%  Similarity=0.268  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhh-------h
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------L  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l  112 (358)
                      ..++.|+||+|.+|.+++..|+..|.  ++++.|++.  ......++.+..  ..+..+.. -+|   .++.       +
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            34899999999999999999999887  999999875  222233343321  11111111 112   1122       2


Q ss_pred             CCCCEEEEcCCCCCC-C--CCC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 018265          113 TGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  164 (358)
                      ...|+||+++|.... +  ..+   -...+..|......+.+.+..+   ...+.++++|.
T Consensus        85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (254)
T PRK08085         85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS  145 (254)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            357999999986421 1  111   1224555655544444444432   23356666654

>TIGR01746 Thioester-redct thioester reductase domain

Probab=96.93  E-value=0.011  Score=56.88  Aligned_cols=114  Identities=13%  Similarity=0.073  Sum_probs=70.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHH-H----HhcC-----CCC-CeEEEEeCC----------C
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-D----ISHM-----DTN-AVVRGFLGQ----------Q  106 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~-d----l~~~-----~~~-~~v~~~~~t----------~  106 (358)
                      +|.|+||+|++|++++..|+..+...+|+++.++....... .    +...     ... ..+..+.+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58999999999999999999887434788887754211111 1    1110     000 233333221          1


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++.+..+++|+||++++.... .....++...|+.....+++...+..... ++++|
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~-~v~iS  135 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKP-LHYVS  135 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCce-EEEEc
Confidence            344556899999999875421 22334556788888888888887765443 44433

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.93  E-value=0.0058  Score=59.47  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ...++|+|||. |.+|+.+|..|...|.  +|+.+|++...  ..+.        +.   ...++++++++||+|++..-
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~--~~~~--------~~---~~~~l~ell~~aDiVil~lP  207 (330)
T PRK12480        144 VKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNK--DLDF--------LT---YKDSVKEAIKDADIISLHVP  207 (330)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhH--hhhh--------hh---ccCCHHHHHhcCCEEEEeCC
Confidence            34568999998 9999999999987776  99999986411  0110        11   12467899999999999752


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      ..           ..+..++.  .+.+....|++++|+++-=
T Consensus       208 ~t-----------~~t~~li~--~~~l~~mk~gavlIN~aRG  236 (330)
T PRK12480        208 AN-----------KESYHLFD--KAMFDHVKKGAILVNAARG  236 (330)
T ss_pred             Cc-----------HHHHHHHh--HHHHhcCCCCcEEEEcCCc
Confidence            21           11122221  1222223478899988643

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.024  Score=51.85  Aligned_cols=145  Identities=16%  Similarity=0.092  Sum_probs=76.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +..++.|+||+|.+|++++..|+..|.  ++++++.+..  .....++. .  ...+..+.. -+|   .++++      
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~   78 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAAR   78 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999886  8999987652  11222222 1  112222111 122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       .+.|+||+.+|.....   ..+.   ...+..|.....    .+.+.+++.. ...+++++.-....            
T Consensus        79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS~~~~~------------  145 (252)
T PRK06138         79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG-GGSIVNTASQLALA------------  145 (252)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-CeEEEEECChhhcc------------
Confidence             3789999999864211   1111   122455555443    3444444333 34556554432111            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHh
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l  207 (358)
                      +.+....++.+......+...+++.+
T Consensus       146 ~~~~~~~Y~~sK~a~~~~~~~l~~~~  171 (252)
T PRK06138        146 GGRGRAAYVASKGAIASLTRAMALDH  171 (252)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            22233344554433345556666665

>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases

Probab=96.92  E-value=0.0043  Score=57.22  Aligned_cols=70  Identities=10%  Similarity=0.065  Sum_probs=46.5

Q ss_pred             HHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018265          279 KFADACLRGLRGDAGVIECAY-VASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKG  352 (358)
Q Consensus       279 ~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  352 (358)
                      .++++|.+|.+   .++.+++ .+|.+   |+|.++++||+|+++|+.++.. ++|++..++++......-+-.++.+
T Consensus       141 ~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~~~e~L~veAa  214 (232)
T PF11975_consen  141 AAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVKAYERLTVEAA  214 (232)
T ss_dssp             HHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            44455577754   3555554 57775   8899999999999999999776 6999999998877665555444443

It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.92  E-value=0.015  Score=61.90  Aligned_cols=151  Identities=18%  Similarity=0.138  Sum_probs=81.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCC---cHHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQ---QLEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~----  113 (358)
                      .+.++|.|+||+|.+|++++..|++.|.  +|+++|++.  ......++........+..+. .-+   +.+++++    
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~  489 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL  489 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999887  999999875  222222332110001111111 112   2233333    


Q ss_pred             ---CCCEEEEcCCCCCC-C--CCCHH---hHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 ---GMDIVIIPAGVPRK-P--GMTRD---DLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~-~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                         +.|+||+++|.... +  ..+..   ..+..|+    .+.+...+.+++....+.+++++.-....           
T Consensus       490 ~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~-----------  558 (676)
T TIGR02632       490 AYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY-----------  558 (676)
T ss_pred             hcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC-----------
Confidence               68999999986432 1  11111   1122333    23445566665544445566554322111           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                       +.+..-.++.+......+.+.++..++
T Consensus       559 -~~~~~~aY~aSKaA~~~l~r~lA~el~  585 (676)
T TIGR02632       559 -AGKNASAYSAAKAAEAHLARCLAAEGG  585 (676)
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence             122223455555455566677777764

>PRK06398 aldose dehydrogenase; Validated

Probab=96.92  E-value=0.017  Score=53.50  Aligned_cols=151  Identities=17%  Similarity=0.148  Sum_probs=83.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhh-------hCCCCE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-------LTGMDI  117 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a-------l~~aDi  117 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++...........    .++.   ...+.+++       +...|+
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~----~D~~---~~~~i~~~~~~~~~~~~~id~   75 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFK----VDVS---NKEQVIKGIDYVISKYGRIDI   75 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEE----ccCC---CHHHHHHHHHHHHHHcCCCCE
Confidence            345899999999999999999999887  8899987652110000000    0010   01122222       246899


Q ss_pred             EEEcCCCCCCC---CCCH---HhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          118 VIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       118 VIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      +|+.+|.....   ..+.   ...+..|+..    .+.+.+.+.+. ..+.||+++.-...            ...+..-
T Consensus        76 li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~------------~~~~~~~  142 (258)
T PRK06398         76 LVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIASVQSF------------AVTRNAA  142 (258)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCcchhc------------cCCCCCc
Confidence            99999864321   1122   2234556554    44444444432 34666766542211            1233444


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .++.+......+-+.++..++  +. |++..+.
T Consensus       143 ~Y~~sKaal~~~~~~la~e~~--~~-i~vn~i~  172 (258)
T PRK06398        143 AYVTSKHAVLGLTRSIAVDYA--PT-IRCVAVC  172 (258)
T ss_pred             hhhhhHHHHHHHHHHHHHHhC--CC-CEEEEEe
Confidence            566655444556777777775  23 6555544

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.92  E-value=0.012  Score=53.72  Aligned_cols=115  Identities=20%  Similarity=0.266  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCcHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al------  112 (358)
                      +.++|.|+||+|++|.+++..|+..|.  +|++++++.  ......++....  ..+..+..    ..++++++      
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED   80 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999887  899999875  122222333221  22222211    11222323      


Q ss_pred             -CCCCEEEEcCCCCCC-C--CCCH---HhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 018265          113 -TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  164 (358)
                       ...|+||+++|.... +  ..+.   ...+..|+.....+.+.+    .+.. ...+++++.
T Consensus        81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss  142 (251)
T PRK12826         81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS  142 (251)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence             368999999876431 1  1222   223455655555555444    4433 345555543

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.016  Score=55.73  Aligned_cols=174  Identities=17%  Similarity=0.072  Sum_probs=89.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCcH---Hh------
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---ED------  110 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~---~~------  110 (358)
                      +++.+++.|+||+|.+|..++..|+..|.  .|++.+++..  .....++........+..+. .-.|+   ++      
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~   88 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR   88 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence            34556899999999999999999999887  8999998762  22223343211111222211 11222   11      


Q ss_pred             -hhCCCCEEEEcCCCCCCC--CCC---HHhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          111 -ALTGMDIVIIPAGVPRKP--GMT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       111 -al~~aDiVIi~ag~~~~~--g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       .....|++|+.||....+  ..+   -...+..|.    -+.+.+.+.+++.  .+.|++++.-......+-..-+...
T Consensus        89 ~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~  166 (313)
T PRK05854         89 AEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWE  166 (313)
T ss_pred             HhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCccccccc
Confidence             124589999999864321  111   122344443    3455556655543  3556665543221100000000000


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..++....++.+.+....+-..+++++......|.+..+.
T Consensus       167 ~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~  206 (313)
T PRK05854        167 RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAH  206 (313)
T ss_pred             ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEe
Confidence            1133334566666666666677777654444455554444

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.92  E-value=0.0057  Score=60.56  Aligned_cols=53  Identities=19%  Similarity=0.372  Sum_probs=43.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .+||+|||+.|.+|..++..|...|+  +|.++|.+..                      ++.++++++||+||++.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            36999999559999999999999887  8999997420                      13467789999999985

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.91  E-value=0.0074  Score=56.98  Aligned_cols=66  Identities=20%  Similarity=0.330  Sum_probs=44.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||. |.+|..++..|...++..+|..+|+++..  ...+.....   ...   ..++.++ .+||+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~~-~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEEL-KKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHHH-hcCCEEEEeC
Confidence            58999998 99999999999988865578889986521  111221111   111   1244554 4699999985

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.046  Score=50.29  Aligned_cols=149  Identities=12%  Similarity=0.065  Sum_probs=77.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCcH---Hhhh----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDAL----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~e-l~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al----  112 (358)
                      .+..+|.|+||+|.+|+.++..|...|.  + |+++|++..  .....++...  ...+..+. .-+|.   .+++    
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   79 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAAD   79 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            3456899999999999999999998886  5 999998651  2222223211  12222111 11222   2222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCCHH---hHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          113 ---TGMDIVIIPAGVPRKP---GMTRD---DLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       113 ---~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                         .+.|+||+++|.....   ..+..   ..+..|+.-...+    .+.+.+....+.+++++.-....          
T Consensus        80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~----------  149 (260)
T PRK06198         80 EAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHG----------  149 (260)
T ss_pred             HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCccccc----------
Confidence               3689999999865321   11222   2245555444444    44444433335566655433211          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                        +.+....++.+......+-..++..+.
T Consensus       150 --~~~~~~~Y~~sK~a~~~~~~~~a~e~~  176 (260)
T PRK06198        150 --GQPFLAAYCASKGALATLTRNAAYALL  176 (260)
T ss_pred             --CCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence              222233455544333345555666553

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.91  E-value=0.0075  Score=58.27  Aligned_cols=111  Identities=16%  Similarity=0.141  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEEeCCCc--h--------hH--HHH----Hh-cCC--------CCCeEEEEeCCCcHHhhh
Q 018265           58 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------GV--TAD----IS-HMD--------TNAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        58 vG~~~a~~l~~~~~~~el~L~D~~~~--~--------g~--~~d----l~-~~~--------~~~~v~~~~~t~d~~~al  112 (358)
                      +|+.+|..++..|+  +|+|+|++..  .        +.  ..+    +. ...        ...+++.. .+.|+++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVV-ARDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEee-cCcchHHHh
Confidence            46889999999998  9999999861  1        11  001    11 100        01234442 123467889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      ++||+||.+.              .+|..+.+++..++.+.+ |++++  .||-......-+    ...... ++|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~l----a~~~~~-p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDL----QRHVAH-PERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHH----HhhcCC-cccEEEE
Confidence            9999999984              557788888999999988 56644  777777654322    222232 4678777


Q ss_pred             e
Q 018265          192 T  192 (358)
Q Consensus       192 t  192 (358)
                      .
T Consensus       137 H  137 (314)
T PRK08269        137 H  137 (314)
T ss_pred             e
Confidence            4

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.027  Score=51.68  Aligned_cols=76  Identities=13%  Similarity=0.139  Sum_probs=47.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHH-HhcCCCCCeEEEE----eCCCcHHhhhC-CCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD-ISHMDTNAVVRGF----LGQQQLEDALT-GMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~d-l~~~~~~~~v~~~----~~t~d~~~al~-~aDiVI  119 (358)
                      ++|.|+||+|.+|+.++..|+..|.  .+++.+.+... ....+ .....  ..+...    ....++..++. +.|+||
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi   78 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLL   78 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence            3799999999999999999999886  88888876411 11111 11111  112211    11123334444 899999


Q ss_pred             EcCCCCC
Q 018265          120 IPAGVPR  126 (358)
Q Consensus       120 i~ag~~~  126 (358)
                      +.+|...
T Consensus        79 ~~ag~~~   85 (257)
T PRK09291         79 NNAGIGE   85 (257)
T ss_pred             ECCCcCC
Confidence            9998653

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.025  Score=52.64  Aligned_cols=116  Identities=18%  Similarity=0.163  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCC-CCeEEEEeCCCc-------HHhhhCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-NAVVRGFLGQQQ-------LEDALTG  114 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~t~d-------~~~al~~  114 (358)
                      +.++|.|+||+|.+|..++..|+..|.  .+++.+++..  .....++..... ..++.   ...+       ..+.+.+
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~~~   78 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGGPLDVT---DPASFAAFLDAVEADLGP   78 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEEEccCC---CHHHHHHHHHHHHHHcCC
Confidence            345899999999999999999999887  8899988652  111222221100 00110   0011       1122356


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       115 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      .|++|+.+|.....   ..+   -...+..|+.    +.+.+.+.+.+. ..+.|+++|.-.
T Consensus        79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~  139 (273)
T PRK07825         79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASLA  139 (273)
T ss_pred             CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCcc
Confidence            89999999864321   111   1223455654    444455555443 345677766543

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.89  E-value=0.038  Score=50.03  Aligned_cols=117  Identities=23%  Similarity=0.299  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  112 (358)
                      +.++|.|+|++|++|++++..|+..|.  ++++...+..   .....++....  ..+..+.. -.|   +.+++     
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            456999999999999999999998887  7766665442   11222232111  12221110 112   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHhhC---CCeEEEEecCC
Q 018265          113 --TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNP  165 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP  165 (358)
                        .+.|.||+++|.....   ..+.   ...+..|+.....+.+.+..+.   ....+++++..
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~  143 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSV  143 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence              3689999998864321   1111   1234456666666666665432   23456665543

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.02  Score=52.38  Aligned_cols=145  Identities=17%  Similarity=0.130  Sum_probs=80.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCe-EEE-EeCCCcHHhhhCC----CCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VRG-FLGQQQLEDALTG----MDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~-v~~-~~~t~d~~~al~~----aDiVIi  120 (358)
                      .+|.|+||+|.+|..++..|+..|.  +++++|++...  ..++.+...... +.. .+...+.+++++.    .|.+|+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSV--LDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            3799999999999999999999887  89999986521  111211110011 111 1111233334433    477888


Q ss_pred             cCCCCCCCC---CCH---HhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeee
Q 018265          121 PAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (358)
Q Consensus       121 ~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~  193 (358)
                      .+|......   .+.   ...+..|......+.+.+..+- +...+++++.-....            +.|....++.+.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~------------~~~~~~~Y~asK  145 (240)
T PRK06101         78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL------------ALPRAEAYGASK  145 (240)
T ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc------------CCCCCchhhHHH
Confidence            777432111   122   2346677777777777766542 344566655432211            234444566665


Q ss_pred             ccHHHHHHHHHHHh
Q 018265          194 LDVVRANTFVAEVL  207 (358)
Q Consensus       194 lds~R~~~~lA~~l  207 (358)
                      .....+.+.++..+
T Consensus       146 ~a~~~~~~~l~~e~  159 (240)
T PRK06101        146 AAVAYFARTLQLDL  159 (240)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55556666676555

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.003  Score=58.40  Aligned_cols=150  Identities=16%  Similarity=0.199  Sum_probs=81.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCc----------HHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d----------~~~al~  113 (358)
                      +.++|.|+||+|.+|+.++..|+..|.  +|++++++....    +..     .+..+. .-.|          ..+.+.
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~----~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDD----LPE-----GVEFVAADLTTAEGCAAVARAVLERLG   76 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhh----cCC-----ceeEEecCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999887  899999865211    000     011100 0011          122345


Q ss_pred             CCCEEEEcCCCCCCC-C----CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 GMDIVIIPAGVPRKP-G----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~-g----~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      ..|+||+.+|..... +    .+   -...+..|+.    +.+.+.+.+++.. .+.+|+++......            
T Consensus        77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~------------  143 (260)
T PRK06523         77 GVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG-SGVIIHVTSIQRRL------------  143 (260)
T ss_pred             CCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEecccccC------------
Confidence            789999999853211 1    11   1223444544    3445555555543 35666666543221            


Q ss_pred             CCC-CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYD-PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p-~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+ ....++.+......+.+.++..++  +..|++.++-
T Consensus       144 ~~~~~~~~Y~~sK~a~~~l~~~~a~~~~--~~gi~v~~i~  181 (260)
T PRK06523        144 PLPESTTAYAAAKAALSTYSKSLSKEVA--PKGVRVNTVS  181 (260)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            122 223455544444456666776653  3455554443

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.015  Score=53.39  Aligned_cols=37  Identities=22%  Similarity=0.202  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++.++|.|+||+|.+|++++..|+..|.  +|++++++.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4456999999999999999999998887  899998865

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.87  E-value=0.019  Score=52.26  Aligned_cols=115  Identities=22%  Similarity=0.279  Sum_probs=62.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-----
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (358)
                      +++|.|+||+|.+|+.++..++..|.  ++++. +.+..  .....++...  ...+..... -+|   +.++++     
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEK   80 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998886  77777 87651  1112222221  122222211 122   222232     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHhhC---CCeEEEEecC
Q 018265          114 --GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN  164 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  164 (358)
                        ..|+||+.+|.....   ..+.   ...+..|..-...+.+.+....   ....+++++.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS  142 (247)
T PRK05565         81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISS  142 (247)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence              789999998864211   1111   2334566665444544443321   1234555554

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.023  Score=51.68  Aligned_cols=148  Identities=16%  Similarity=0.102  Sum_probs=78.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhh---CCCCEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL---TGMDIVI  119 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al---~~aDiVI  119 (358)
                      ++.+++.|+||+|.+|++++..++..|.  ++++++++...  ..++........+.. .+...+..+++   ...|+||
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi   82 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLV   82 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEE
Confidence            3446899999999999999999999887  89999986521  112211100011111 11111223333   3479999


Q ss_pred             EcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 018265          120 IPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       120 i~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      +.+|.....   ..+   -...+..|+.-...+++.+.+.    +..+.+++++.....            .+.+....+
T Consensus        83 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~~~y  150 (245)
T PRK07060         83 NCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAAL------------VGLPDHLAY  150 (245)
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHc------------CCCCCCcHh
Confidence            998864321   111   1223456666665566555543    222566666542211            122222334


Q ss_pred             EeeeccHHHHHHHHHHHh
Q 018265          190 GVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l  207 (358)
                      +.+.....++-+.+++.+
T Consensus       151 ~~sK~a~~~~~~~~a~~~  168 (245)
T PRK07060        151 CASKAALDAITRVLCVEL  168 (245)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444433445566666665

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.87  E-value=0.0085  Score=56.76  Aligned_cols=100  Identities=17%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++||+|||+ |.+|.+++..|...+.  ..+|.++|.+... ....+...  ...+..   +.|..++++++|+||++..
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~~~---~~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTVEL---ADNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCeEE---eCCHHHHHhhCCEEEEecC
Confidence            368999998 9999999999988762  2488999876411 12222211  112222   2455677899999998852


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                                      ...+.++++.+..+- ++..||.+.|-++.
T Consensus        74 ----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~  103 (277)
T PRK06928         74 ----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL  103 (277)
T ss_pred             ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence                            123445555565443 45566666666544

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.86  E-value=0.0046  Score=52.14  Aligned_cols=77  Identities=22%  Similarity=0.322  Sum_probs=53.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      ++.+..||+|+|| |.+|..++..|...|. .+|.+++++..  ...+..+    ....+.... ..++.+.+.++|+||
T Consensus         8 ~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-~~~~~~~~~~~DivI   80 (135)
T PF01488_consen    8 GDLKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEF----GGVNIEAIP-LEDLEEALQEADIVI   80 (135)
T ss_dssp             STGTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHH----TGCSEEEEE-GGGHCHHHHTESEEE
T ss_pred             CCcCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHc----Cccccceee-HHHHHHHHhhCCeEE
Confidence            3456679999998 9999999999999875 47999998652  2222233    112344432 356777899999999


Q ss_pred             EcCCCC
Q 018265          120 IPAGVP  125 (358)
Q Consensus       120 i~ag~~  125 (358)
                      .+.+.+
T Consensus        81 ~aT~~~   86 (135)
T PF01488_consen   81 NATPSG   86 (135)
T ss_dssp             E-SSTT
T ss_pred             EecCCC
Confidence            986554

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.85  E-value=0.0077  Score=56.99  Aligned_cols=68  Identities=13%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++||+|||+ |.+|++++..|+..+.  ..+|..+|++..  ....+.+.. .  +..   .++..+.+++||+||++.
T Consensus         2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~--~~~~l~~~~-g--~~~---~~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVS--NLKNASDKY-G--ITI---TTNNNEVANSADILILSI   71 (272)
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHH--HHHHHHHhc-C--cEE---eCCcHHHHhhCCEEEEEe
Confidence            358999998 9999999999998874  357999987642  222232211 1  222   234567789999999985

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.85  E-value=0.021  Score=53.05  Aligned_cols=156  Identities=13%  Similarity=0.157  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcH---Hhh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL---EDA-------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------  111 (358)
                      +..++.|+||+|.+|.+++..|+..|.  ++++.|.+.  ......++....  .++..+. .-+|.   +++       
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            445899999999999999999998887  888998765  222223333221  1222211 11222   122       


Q ss_pred             hCCCCEEEEcCCCCCC-C-CC-C---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          112 LTGMDIVIIPAGVPRK-P-GM-T---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~-~-g~-~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      +...|++|+++|.... + .. +   -...+..|...    .+.+.+.+.+ ...+.|++++......            
T Consensus        85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~------------  151 (265)
T PRK07097         85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMMSEL------------  151 (265)
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCccccC------------
Confidence            2447999999986321 1 11 1   12223445443    3344444443 3356777776654221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.+....++.+...-..+.+.+++.++  +..|++..+
T Consensus       152 ~~~~~~~Y~~sKaal~~l~~~la~e~~--~~gi~v~~v  187 (265)
T PRK07097        152 GRETVSAYAAAKGGLKMLTKNIASEYG--EANIQCNGI  187 (265)
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhh--hcCceEEEE
Confidence            233334556654444456677777764  344554443

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.83  E-value=0.015  Score=52.79  Aligned_cols=115  Identities=20%  Similarity=0.237  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al----  112 (358)
                      +++++|.|+||+|.+|+.++..|+++|.  ++++......   .....++...  ...+..+.. -.|   ..+++    
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~   79 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAV   79 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHH
Confidence            3456999999999999999999999887  6666554331   1112222211  122222211 112   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHH----HhhCCCeEEEEec
Q 018265          113 ---TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLIS  163 (358)
Q Consensus       113 ---~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~t  163 (358)
                         .+.|+||+++|.....   +.+.   .+.+..|+.....+.+.+    ++.. ...+++++
T Consensus        80 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~S  142 (249)
T PRK12825         80 ERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNIS  142 (249)
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEC
Confidence               4679999999854221   1122   233555666555555555    4433 23455544

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.83  E-value=0.019  Score=53.02  Aligned_cols=156  Identities=17%  Similarity=0.131  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-GQQQ---LEDALT------  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  113 (358)
                      +..+|.|+||+|.+|..++..|+..|.  .+++++.+. .......+....  ..+..+. .-+|   .++.++      
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   89 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF   89 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999999887  888998764 122222222211  1222111 1122   222333      


Q ss_pred             -CCCEEEEcCCCCCC-C--CCC---HHhHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 -GMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 -~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       ..|++|+++|.... +  ..+   -...+..|+.....+.    +.+.+. ..+.+++++......            +
T Consensus        90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------~  156 (258)
T PRK06935         90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQ-GSGKIINIASMLSFQ------------G  156 (258)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhc-CCeEEEEECCHHhcc------------C
Confidence             67999999986431 1  111   2233455655544444    444332 245666665543211            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .+..-.++.+......+.+.+++.++  +..|++.++
T Consensus       157 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~i  191 (258)
T PRK06935        157 GKFVPAYTASKHGVAGLTKAFANELA--AYNIQVNAI  191 (258)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            12222344444444456677777764  345544333

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.83  E-value=0.034  Score=51.93  Aligned_cols=37  Identities=16%  Similarity=0.197  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .+..++.|+||+|.+|++++..|+..|.  .|+++|++.
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~   44 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ   44 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3456899999999999999999999887  899999865

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.82  E-value=0.0095  Score=55.90  Aligned_cols=102  Identities=25%  Similarity=0.295  Sum_probs=64.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC-CCCEEEEcCCCCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGVPRK  127 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~ag~~~~  127 (358)
                      |+|+|++|+||+++...|...|.  +|..+-++.......  .+    ..+...   +.+.+... ++|+||..||.|-.
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~~--~~----~~v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQN--LH----PNVTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhhh--cC----cccccc---chhhhcccCCCCEEEECCCCccc
Confidence            68999999999999999999887  888887665221111  11    111111   11223333 79999999997632


Q ss_pred             CC----CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 018265          128 PG----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (358)
Q Consensus       128 ~g----~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv  161 (358)
                      ..    +....+..--+...+.+.+.|.+......+++
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~i  107 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLI  107 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEE
Confidence            21    12233445557788888899987664443333

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.82  E-value=0.019  Score=52.53  Aligned_cols=153  Identities=12%  Similarity=0.051  Sum_probs=80.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCcHHhhhC-------C-
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALT-------G-  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~-------~-  114 (358)
                      ++|.|+||+|.+|++++..|+..|.  ++++.+.+.. ....++.+... ..+..+.    ...+++++++       . 
T Consensus         6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQSE-DAAEALADELG-DRAIALQADVTDREQVQAMFATATEHFGKP   81 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCCCH-HHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4899999999999999999998887  7777654331 11111111000 1111111    1112333332       2 


Q ss_pred             CCEEEEcCCCCC-------CC--CCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          115 MDIVIIPAGVPR-------KP--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       115 aDiVIi~ag~~~-------~~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      .|++|+.+|...       .+  ..+.   ...+..|+.....+.+.+..+   ...+.+++++......          
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~----------  151 (253)
T PRK08642         82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN----------  151 (253)
T ss_pred             CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----------
Confidence            899999987521       11  1111   223455655444444444321   2246677766543211          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~  217 (358)
                        ..++...++.+......+-+.+|+.++  +..+++.
T Consensus       152 --~~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~v~  185 (253)
T PRK08642        152 --PVVPYHDYTTAKAALLGLTRNLAAELG--PYGITVN  185 (253)
T ss_pred             --CCCCccchHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence              122234577766666677788888775  3445443

>PRK07574 formate dehydrogenase; Provisional

Probab=96.81  E-value=0.013  Score=58.09  Aligned_cols=113  Identities=17%  Similarity=0.228  Sum_probs=68.3

Q ss_pred             cccccccCC-CCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHh
Q 018265           32 GLGRMDCRA-KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLED  110 (358)
Q Consensus        32 ~~~~~~~~~-~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~  110 (358)
                      .|.+..|.. ......++|+|+|. |.||+.++..|..-|.  +|+.+|+........  ...    .+..   ..++++
T Consensus       177 ~W~~~~~~~~~~~L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~--~~~----g~~~---~~~l~e  244 (385)
T PRK07574        177 GWNIADCVSRSYDLEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE--QEL----GLTY---HVSFDS  244 (385)
T ss_pred             CCCcccccccceecCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH--hhc----Ccee---cCCHHH
Confidence            465544322 23455679999998 9999999999987776  999999764211111  000    1111   135789


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec--CCCCcc
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNST  169 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~~  169 (358)
                      .++.||+|++.....           ..+-.++.  .+.+....|.+++||++  ..+|.-
T Consensus       245 ll~~aDvV~l~lPlt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~  292 (385)
T PRK07574        245 LVSVCDVVTIHCPLH-----------PETEHLFD--ADVLSRMKRGSYLVNTARGKIVDRD  292 (385)
T ss_pred             HhhcCCEEEEcCCCC-----------HHHHHHhC--HHHHhcCCCCcEEEECCCCchhhHH
Confidence            999999999985321           11222221  13333334788999985  445443

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.81  E-value=0.037  Score=51.01  Aligned_cols=157  Identities=15%  Similarity=0.172  Sum_probs=84.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------CC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~  114 (358)
                      ...+.|+|++|.+|.+++..|+..|.  +|+++|.........++....  ..+..+. .-+|   .++++       ..
T Consensus        10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993         10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            45899999999999999999999887  888888754322223333211  1222111 1122   22222       36


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       115 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      .|++|+++|.....   ..+   -...+..|+....    .+.+.+.+..+.+.+++++.-....            +.+
T Consensus        86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~  153 (253)
T PRK08993         86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQ------------GGI  153 (253)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhcc------------CCC
Confidence            89999999874311   111   2233455655444    4444444434457777765432111            122


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..-.++.+......+.+.+|..+.  +..|++..+-
T Consensus       154 ~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v~  187 (253)
T PRK08993        154 RVPSYTASKSGVMGVTRLMANEWA--KHNINVNAIA  187 (253)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhh--hhCeEEEEEe
Confidence            223455554333445667777653  4455544443

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.034  Score=51.22  Aligned_cols=116  Identities=15%  Similarity=0.118  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (358)
                      ++..+|.|+||+|.+|..++..|+..|.  ++++.+.+.. .....++....  ..+..+.. -+|   ++.+++     
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAK   80 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            3446899999999999999999999887  7888887662 22223333211  12222111 122   223332     


Q ss_pred             --CCCEEEEcCCCCCCCCC-----CHHhHHHHHHHHHHHHHHHHHhhC--CCeEEEEec
Q 018265          114 --GMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLIS  163 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~t  163 (358)
                        ..|+||+++|.......     +-...+..|+.....+.+....+.  ..+.+++++
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s  139 (258)
T PRK08628         81 FGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS  139 (258)
T ss_pred             cCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence              57999999986432211     122345566655555555444321  234455544

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.80  E-value=0.054  Score=50.05  Aligned_cols=157  Identities=15%  Similarity=0.135  Sum_probs=96.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC-------CcHHhhhCCCCE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-------QQLEDALTGMDI  117 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-------~d~~~al~~aDi  117 (358)
                      +=+.|+||++.+|.++|..|...|.  .++|..++.  ++..+.++.+....+..-.+...       ....+.+...|+
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            3578999999999999999999998  999999876  55566666641111111011000       123345678999


Q ss_pred             EEEcCCCCCCCC------CCHHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          118 VIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       118 VIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      +|..||..+...      .+-..++..|++-+......+    .+. ..+.|||++.=....            .||...
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG~~------------~y~~~~  151 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAGRY------------PYPGGA  151 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEeccccccc------------cCCCCc
Confidence            999999764311      123446677877666555544    433 356888876554332            267778


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +||-|.-....|...|-..+  ..+.|++..|-
T Consensus       152 vY~ATK~aV~~fs~~LR~e~--~g~~IRVt~I~  182 (246)
T COG4221         152 VYGATKAAVRAFSLGLRQEL--AGTGIRVTVIS  182 (246)
T ss_pred             cchhhHHHHHHHHHHHHHHh--cCCCeeEEEec
Confidence            88887544433433333332  24666665553

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.06  Score=49.15  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=63.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcHH----------hhhC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQLE----------DALT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~al~  113 (358)
                      .++.|+||+|.+|.+++..|+..+.  .+++.+++.  ......++........+.... .-+|.+          +.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998886  899999875  222222332211111222211 112221          2234


Q ss_pred             CCCEEEEcCCCCCCCCC---C---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 018265          114 GMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~---~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  164 (358)
                      ..|+||+.+|.......   +   -...+..|......+.+.+    ++.. ...+++++.
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS  140 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG-SGHLVLISS  140 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEec
Confidence            68999999986432211   1   1223455655444444443    3333 334555543

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.033  Score=51.58  Aligned_cols=116  Identities=22%  Similarity=0.233  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcHH---hh------h
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQLE---DA------L  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~~---~a------l  112 (358)
                      +..+|.|+||+|.+|..++..|+..|.  +|++++++.  ......++...   ..+..+.. -+|.+   +.      +
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~   78 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPYP---GRHRWVVADLTSEAGREAVLARAREM   78 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHhc
Confidence            345899999999999999999999887  899999875  11122223111   12222111 12221   11      3


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 018265          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  165 (358)
                      ...|+||+++|......   .+   -...+..|+.....+.+.+..+   .+.+.+++++..
T Consensus        79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~  140 (263)
T PRK09072         79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST  140 (263)
T ss_pred             CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence            46799999998643211   11   1234456665555555555432   223556666553

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.79  E-value=0.013  Score=51.79  Aligned_cols=97  Identities=27%  Similarity=0.348  Sum_probs=60.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ......+|+|+|. |.||+.++..+..-|.  +|+.+|.......  ...+..    +.    ..++++.++.||+|++.
T Consensus        32 ~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~~----~~----~~~l~ell~~aDiv~~~   98 (178)
T PF02826_consen   32 RELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEFG----VE----YVSLDELLAQADIVSLH   98 (178)
T ss_dssp             S-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHTT----EE----ESSHHHHHHH-SEEEE-
T ss_pred             cccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccccc----ce----eeehhhhcchhhhhhhh
Confidence            3445569999998 9999999999997777  9999998763222  111111    11    13678999999999997


Q ss_pred             CC-CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          122 AG-VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       122 ag-~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      .- .+...++-       |.       +.+.+..|++++||++--
T Consensus        99 ~plt~~T~~li-------~~-------~~l~~mk~ga~lvN~aRG  129 (178)
T PF02826_consen   99 LPLTPETRGLI-------NA-------EFLAKMKPGAVLVNVARG  129 (178)
T ss_dssp             SSSSTTTTTSB-------SH-------HHHHTSTTTEEEEESSSG
T ss_pred             hccccccceee-------ee-------eeeeccccceEEEeccch
Confidence            53 22222221       11       122334478899998643

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.78  E-value=0.022  Score=55.04  Aligned_cols=158  Identities=15%  Similarity=0.147  Sum_probs=83.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE--eCCCc-------HHhhhC-
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--LGQQQ-------LEDALT-  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~--~~t~d-------~~~al~-  113 (358)
                      ...+.|+||+|.+|.+++..|+..|.  +|++++++.  .+....++........+..+  .-+.|       ..+.+. 
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            35899999999999999999999987  899999876  23333444322111122211  11112       122233 


Q ss_pred             -CCCEEEEcCCCCCC---C--CCCH---HhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 -GMDIVIIPAGVPRK---P--GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 -~aDiVIi~ag~~~~---~--g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       |.|++|+.||....   +  ..+.   ...+..|+.....+.+.    +.+. ..+.+++++.-....          .
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~iSS~a~~~----------~  199 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGAIINIGSGAAIV----------I  199 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCcEEEEEechhhcc----------C
Confidence             45589999986421   1  1121   23455565544444444    4433 345666665432211          0


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                      ++.|..-.++.+......+-..++..++  +..|++.+
T Consensus       200 ~~~p~~~~Y~aSKaal~~~~~~L~~El~--~~gI~V~~  235 (320)
T PLN02780        200 PSDPLYAVYAATKAYIDQFSRCLYVEYK--KSGIDVQC  235 (320)
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHh--ccCeEEEE
Confidence            1122223444444334456666666663  34454443

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.78  E-value=0.098  Score=48.33  Aligned_cols=158  Identities=14%  Similarity=0.127  Sum_probs=84.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe-CCCcHH---hh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQLE---DA------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~-~t~d~~---~a------  111 (358)
                      +..++.|+||+|.+|..++..|+..|.  .+++...+..   .....++....  ..+..+. .-+|.+   +.      
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence            445899999999999999999999886  7777766431   22222333221  1222111 112221   11      


Q ss_pred             -hCCCCEEEEcCCCCCCC---CCCHH---hHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 -LTGMDIVIIPAGVPRKP---GMTRD---DLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 -l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       +...|++|+.+|.....   ..+..   ..+..|+.    +.+.+.+.+.+....+.+++++.-...            
T Consensus        82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~------------  149 (261)
T PRK08936         82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ------------  149 (261)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc------------
Confidence             23579999999864321   11121   23455543    334555566655445666666542111            


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ...|..-.++.+......+...++..+.  +..|++.++.
T Consensus       150 ~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v~  187 (261)
T PRK08936        150 IPWPLFVHYAASKGGVKLMTETLAMEYA--PKGIRVNNIG  187 (261)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEEEEEE
Confidence            1234444566654333445666666663  3456555554

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.059  Score=49.68  Aligned_cols=157  Identities=15%  Similarity=0.147  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c----hhHHHHHhcCCCCCeEEEEe-CCCc---HHhh---
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T----PGVTADISHMDTNAVVRGFL-GQQQ---LEDA---  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~----~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a---  111 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  ++++++.+.  .    .....++....  ..+..+. .-+|   .+++   
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~   82 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDD   82 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHH
Confidence            345899999999999999999998887  666665432  1    11122232211  1222211 1122   2222   


Q ss_pred             ----hCCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCccHHHHHHHHHH
Q 018265          112 ----LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       112 ----l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~~~~~~~~  179 (358)
                          +...|++|+.+|.....   ..+   -...+..|+.....+++.+...- +.+.++++ +.-....          
T Consensus        83 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~----------  152 (257)
T PRK12744         83 AKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF----------  152 (257)
T ss_pred             HHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc----------
Confidence                23679999999864211   112   22334556555444555544332 33444443 3322111          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                         .|....++.+......+-+.+++.++  +..|++.++.
T Consensus       153 ---~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v~  188 (257)
T PRK12744        153 ---TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVTAVG  188 (257)
T ss_pred             ---CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEEEEe
Confidence               12234567766556678888888876  3445544443

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.78  E-value=0.0077  Score=61.35  Aligned_cols=100  Identities=17%  Similarity=0.193  Sum_probs=63.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC--CCeEEEEeCCCcHHhhhC---CCCEEEEc
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALT---GMDIVIIP  121 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~---~aDiVIi~  121 (358)
                      .+|+|||. |.+|+++|..|+..|.  +|.++|++...  +.++.....  ...+..   +.+++++++   ++|+||++
T Consensus         2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence            48999998 9999999999999998  99999987522  222222100  111222   346777765   58988887


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCcc
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST  169 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~  169 (358)
                      .-.               ...++++++.+..+ .|+.+||..+|-...-
T Consensus        74 v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~~~~d  107 (470)
T PTZ00142         74 IKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNEWYLN  107 (470)
T ss_pred             eCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCCCHHH
Confidence            321               23344444444443 3677888887654333

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.1  Score=48.59  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=84.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCcHHhhh------C
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLEDAL------T  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al------~  113 (358)
                      ...+.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+.    ...+.++++      .
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            34789999999999999999999987  899999875  222223333211 11222111    111222333      3


Q ss_pred             CCCEEEEcCCCCCCC---CCCHH---hHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|++|+.+|.+...   ..+..   ..+..|    ....+.+.+.+++.. .+.||++|......            +.
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~~~~~------------~~  151 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSVAIKE------------PI  151 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCccccC------------CC
Confidence            579999999865321   11221   223334    445667777776543 46677766543211            12


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~  217 (358)
                      |..-.++.+.-.-..+-+.+|..++  +..|++.
T Consensus       152 ~~~~~y~asKaal~~l~~~la~el~--~~gIrVn  183 (263)
T PRK08339        152 PNIALSNVVRISMAGLVRTLAKELG--PKGITVN  183 (263)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhc--ccCeEEE
Confidence            2222233333333456677777774  4455443

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.056  Score=49.62  Aligned_cols=157  Identities=18%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCcH----------Hh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQL----------ED  110 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~  110 (358)
                      +.+.+.|+||+|.+|++++..|+..|.  .+++.+.+.   ......++.....  .+..+. .-+|.          .+
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~   78 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNGG--SAFSIGANLESLHGVEALYSSLDN   78 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEecccCCHHHHHHHHHHHHH
Confidence            345899999999999999999999887  788775432   2222233332111  111100 00111          11


Q ss_pred             hh------CCCCEEEEcCCCCCC-C--CCCH---HhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHH
Q 018265          111 AL------TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       111 al------~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                      .+      ...|++|+.+|.... +  ..+.   ...+..|+.-...+++.+...- ..+.||++|.-....        
T Consensus        79 ~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------  150 (252)
T PRK12747         79 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI--------  150 (252)
T ss_pred             HhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc--------
Confidence            11      268999999986321 1  1111   2234556554444444433321 346677766543221        


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                          +.|..-.|+.+......+.+.+|..++  +..|++.++
T Consensus       151 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~girvn~v  186 (252)
T PRK12747        151 ----SLPDFIAYSMTKGAINTMTFTLAKQLG--ARGITVNAI  186 (252)
T ss_pred             ----CCCCchhHHHHHHHHHHHHHHHHHHHh--HcCCEEEEE
Confidence                223333456655555567777777764  344544444

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.044  Score=50.40  Aligned_cols=157  Identities=16%  Similarity=0.157  Sum_probs=87.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  112 (358)
                      ..++.|+||+|.+|..++..|+..|.  ++++.+++.  ......++.+..  ..+..+. .-+|   .++++       
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999887  899999865  222233343321  1222111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCC--CC--CCCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 TGMDIVIIPAGVPR--KP--GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 ~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      ...|++|+.+|...  .+  ..+.   ...+..|+.    ..+.+.+.+.+. ..+.+++++......           .
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~~-----------~  149 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGHT-----------A  149 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhhc-----------c
Confidence            36799999998632  12  1222   233556654    445555555543 345566655432110           1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.++.+......+-..+++.++  +..|++.++-
T Consensus       150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  186 (254)
T PRK07478        150 GFPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNALL  186 (254)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEEe
Confidence            233344566665555566777777764  3445554443

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.098  Score=48.36  Aligned_cols=161  Identities=13%  Similarity=0.098  Sum_probs=82.8

Q ss_pred             CCCCEEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh----
Q 018265           44 SPGFKVAVLGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G-~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al----  112 (358)
                      ++..++.|+||+| .+|+.++..|+..|.  .|++.|.+.  ......++........+..+.. -++   .++++    
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            3446899999977 599999999999887  789998765  2222223332111112222211 112   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          113 ---TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       113 ---~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                         ...|++|+.+|.....   ..+   -.+.+..|+...    +.+.+.+.+....+.+++++.-....          
T Consensus        93 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~----------  162 (262)
T PRK07831         93 ERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR----------  162 (262)
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC----------
Confidence               3679999999864211   111   122234444433    34444444333245566554322111          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                        ..+..-.++.+...-..+.+.+|..+.  +..|++..+-
T Consensus       163 --~~~~~~~Y~~sKaal~~~~~~la~e~~--~~gI~v~~i~  199 (262)
T PRK07831        163 --AQHGQAHYAAAKAGVMALTRCSALEAA--EYGVRINAVA  199 (262)
T ss_pred             --CCCCCcchHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence              122333456554444456677776653  4455554443

>PRK08264 short chain dehydrogenase; Validated

Probab=96.77  E-value=0.017  Score=52.53  Aligned_cols=143  Identities=13%  Similarity=0.040  Sum_probs=78.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEE----eCCCcHHhhhC---CCCE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALT---GMDI  117 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~----~~t~d~~~al~---~aDi  117 (358)
                      +..+|.|+||+|.+|++++..|+..|. ..|++++++.....  + .    ...+..+    ....+++++++   ..|+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~-~----~~~~~~~~~D~~~~~~~~~~~~~~~~id~   76 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D-L----GPRVVPLQLDVTDPASVAAAAEAASDVTI   76 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h-c----CCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            345899999999999999999998874 36888887652111  1 1    0111111    11122333333   5799


Q ss_pred             EEEcCCCCCCC----CCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          118 VIIPAGVPRKP----GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       118 VIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      ||+.+|.....    ..+.   ...+..|......+.+.+...   ...+.+++++......            +.+...
T Consensus        77 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~------------~~~~~~  144 (238)
T PRK08264         77 LVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV------------NFPNLG  144 (238)
T ss_pred             EEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc------------CCCCch
Confidence            99999873211    1111   223445655555555554322   2345666666544221            233334


Q ss_pred             EEEeeeccHHHHHHHHHHHh
Q 018265          188 LLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l  207 (358)
                      .+|.+......+...+++.+
T Consensus       145 ~y~~sK~a~~~~~~~l~~~~  164 (238)
T PRK08264        145 TYSASKAAAWSLTQALRAEL  164 (238)
T ss_pred             HhHHHHHHHHHHHHHHHHHh
Confidence            45565544455666666665

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.013  Score=52.54  Aligned_cols=75  Identities=19%  Similarity=0.217  Sum_probs=46.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCe-EEE-EeCCCcHHhhhC---CCCEEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VRG-FLGQQQLEDALT---GMDIVII  120 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~-v~~-~~~t~d~~~al~---~aDiVIi  120 (358)
                      +++|.|+||+|++|+.++..|++. .  ++++++++...  ..++.+...... +.. .....+++++++   +.|+||+
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            458999999999999999999887 4  89999976421  112211100011 111 111123444454   5999999


Q ss_pred             cCCCC
Q 018265          121 PAGVP  125 (358)
Q Consensus       121 ~ag~~  125 (358)
                      ++|..
T Consensus        78 ~ag~~   82 (227)
T PRK08219         78 NAGVA   82 (227)
T ss_pred             CCCcC
Confidence            98864

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.042  Score=53.35  Aligned_cols=115  Identities=13%  Similarity=0.093  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------  111 (358)
                      +..+|+|+||+|.+|..++..|+..|.  +|++++++.  ......++....  ..+..+. .-+|   .+++       
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~   82 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE   82 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  899999865  222233343221  1221111 1122   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCCH---HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +...|++|+.+|.....   ..+.   ...+..|    +...+.+.+.+.+. ..+.+|+++.
T Consensus        83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS  144 (334)
T PRK07109         83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGS  144 (334)
T ss_pred             CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence            23689999998864211   1111   1223333    44555666666543 2356666654

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.76  E-value=0.0096  Score=50.59  Aligned_cols=118  Identities=17%  Similarity=0.197  Sum_probs=70.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHH-----HhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-----ISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~d-----l~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |+|+|+ |.+|..+|..|.+.+.  ++.|++... ......     +.+......+.......+..+....+|+||++.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789998 9999999999999887  999999754 212111     1111101112221111222245799999999853


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-ee
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM  193 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~  193 (358)
                      ..                -..+.++.++.+. |++.|+..-|=++..-     .+.+.  +|+.++++- +.
T Consensus        77 a~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-----~l~~~--~~~~~v~~g~~~  125 (151)
T PF02558_consen   77 AY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEE-----VLAEY--FPRPRVLGGVTT  125 (151)
T ss_dssp             GG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHH-----HHHCH--STGSGEEEEEEE
T ss_pred             cc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHH-----HHHHH--cCCCcEEEEEEe
Confidence            11                1233555566665 6778888888887663     23333  566677654 54

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12742 oxidoreductase; Provisional

Probab=96.76  E-value=0.018  Score=52.13  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcH---Hhh---hCCCCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---EDA---LTGMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~a---l~~aDiV  118 (358)
                      +.++|.|+||+|.||+.++..|+..|.  ++++.+.+... ...++.... ....... ..+|.   .+.   +...|++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~id~l   79 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQT-DSADRDAVIDVVRKSGALDIL   79 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEec-CCCCHHHHHHHHHHhCCCcEE
Confidence            345899999999999999999999887  77777653311 111121100 0111111 11222   222   2457999


Q ss_pred             EEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          119 IIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       119 Ii~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      |+++|.....   ..+   -...+..|+.-...++..+..+ .+.+.+++++.-....           ...+....++.
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~~Y~~  148 (237)
T PRK12742         80 VVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------MPVAGMAAYAA  148 (237)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------CCCCCCcchHH
Confidence            9999864321   111   1223455554444443333322 2345666655432111           01334456777


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +......+...++..++  +..+++.++
T Consensus       149 sKaa~~~~~~~la~~~~--~~gi~v~~v  174 (237)
T PRK12742        149 SKSALQGMARGLARDFG--PRGITINVV  174 (237)
T ss_pred             hHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            65555567777777764  334544443

>PRK09242 tropinone reductase; Provisional

Probab=96.76  E-value=0.052  Score=50.02  Aligned_cols=158  Identities=16%  Similarity=0.140  Sum_probs=83.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---H-------Hhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---L-------EDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al  112 (358)
                      .+++.|+||+|.+|+.++..|+..|.  +|++++++.  ......++.......++..+.. -+|   .       .+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999887  899999865  2222333432211112222111 011   1       1224


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCH---HhHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ...|+||+++|.... +  ..+.   ...+..|+.-...+    .+.+++. +.+.+++++.-....            +
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS~~~~~------------~  153 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGSVSGLT------------H  153 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECccccCC------------C
Confidence            567999999986321 1  1111   22344555544444    4444433 345666665433221            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+..-.++.+......+...+|..+.  +..+++..+.
T Consensus       154 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~i~  189 (257)
T PRK09242        154 VRSGAPYGMTKAALLQMTRNLAVEWA--EDGIRVNAVA  189 (257)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHH--HhCeEEEEEE
Confidence            22233455554444456666666652  3445544443

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.75  E-value=0.029  Score=51.74  Aligned_cols=158  Identities=15%  Similarity=0.117  Sum_probs=83.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcH---Hhh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL---EDA-------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------  111 (358)
                      +.++|.|+||+|.+|++++..|...|.  +++++|.+.  ......++.+..  ..+..+. .-+|.   +++       
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~   85 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346999999999999999999999887  889998765  222223333221  1111111 11122   122       


Q ss_pred             hCCCCEEEEcCCCCCC--CCCCHHh---HHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          112 LTGMDIVIIPAGVPRK--PGMTRDD---LFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~--~g~~r~~---~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      +...|++|+++|....  ...+..+   .+..|+.-...+.+.+..+   ...+.+++++.-....            +.
T Consensus        86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------~~  153 (255)
T PRK06113         86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN------------KN  153 (255)
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC------------CC
Confidence            2457999999885321  1222222   2556666555555555422   2234556655433211            22


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +..-.++.+......+.+.++..+  .+..|++.++.
T Consensus       154 ~~~~~Y~~sK~a~~~~~~~la~~~--~~~~i~v~~v~  188 (255)
T PRK06113        154 INMTSYASSKAAASHLVRNMAFDL--GEKNIRVNGIA  188 (255)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHh--hhhCeEEEEEe
Confidence            222335554333334555666655  34556555444

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.75  E-value=0.0081  Score=57.51  Aligned_cols=64  Identities=16%  Similarity=0.297  Sum_probs=44.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC---CCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a  122 (358)
                      |||+|||. |.+|+.++..|...+.  +|+.+|++...  ...+.+..    ...   ..++++.+++   +|+||++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence            58999998 9999999999998887  89999987522  12222211    111   2356666665   68998874

>PRK05855 short chain dehydrogenase; Validated

Probab=96.74  E-value=0.028  Score=57.85  Aligned_cols=160  Identities=16%  Similarity=0.143  Sum_probs=87.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hhhh---
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDAL---  112 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al---  112 (358)
                      ...+.+++.|+||+|.+|.+++..|+..|.  +|++++++.  ......++....  ..+..+.. -+|.   ++.+   
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~  386 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWV  386 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHH
Confidence            445567999999999999999999999888  899999876  222223333211  11221111 1222   1222   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          113 ----TGMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       113 ----~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                          ...|++|+.||.....   ..+.   ...+..|+.    ..+.+.+.+.+....+.|+++|.-....         
T Consensus       387 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~---------  457 (582)
T PRK05855        387 RAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYA---------  457 (582)
T ss_pred             HHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc---------
Confidence                3479999999875321   1121   223445643    4445555565555556777766543221         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                         +.+..-.++.+......+...++..+.  ...|++.++
T Consensus       458 ---~~~~~~~Y~~sKaa~~~~~~~l~~e~~--~~gi~v~~v  493 (582)
T PRK05855        458 ---PSRSLPAYATSKAAVLMLSECLRAELA--AAGIGVTAI  493 (582)
T ss_pred             ---CCCCCcHHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence               223233444443333445566666553  345655444

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.022  Score=52.34  Aligned_cols=157  Identities=14%  Similarity=0.117  Sum_probs=81.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  112 (358)
                      +..+|.|+||+|.+|.+++..|...|.  .|+++|++.  ......++.+..  ..+..+. .-+|   .++++      
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRER   82 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  899999865  222233333221  1111110 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCC--CC--CCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPR--KP--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.+|...  .+  ..+.   ...+..|......+.+.+.++   ...+.+++++......            
T Consensus        83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------  150 (252)
T PRK07035         83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS------------  150 (252)
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC------------
Confidence             35799999987421  11  1221   223455655544444444322   2235666655432111            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ..+..-.++.+......+.+.+++.++  +..|++..+
T Consensus       151 ~~~~~~~Y~~sK~al~~~~~~l~~e~~--~~gi~v~~i  186 (252)
T PRK07035        151 PGDFQGIYSITKAAVISMTKAFAKECA--PFGIRVNAL  186 (252)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence            122333455543333445666666653  344544433

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.74  E-value=0.023  Score=52.00  Aligned_cols=37  Identities=30%  Similarity=0.252  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .+.+++.|+||+|.+|+.++..|+..|.  +++++|.+.
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            4456899999999999999999999887  899998764

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.025  Score=52.77  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+++.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998887  899998765

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.73  E-value=0.016  Score=52.74  Aligned_cols=96  Identities=19%  Similarity=0.318  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      |||+|||. |.+|..+.-.+..... +.-+.+||.+..  .+..+......+.      .+++.+.+.+.|+||.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~e--k~~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEE--KAKELEASVGRRC------VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHH--HHHHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence            68999998 9999999988876643 456778888652  2232332211111      1356677799999999985  


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                                    .+.+++++.++-+.+.|.+|+-++--+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          4778999999998888887776654443

>TIGR02415 23BDH acetoin reductases

Probab=96.73  E-value=0.046  Score=50.07  Aligned_cols=112  Identities=18%  Similarity=0.261  Sum_probs=63.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hhh-------hCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LTG  114 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l~~  114 (358)
                      ++.|+|++|.+|..++..|++.|.  ++++++.+.  ......++....  ..+..+.. -+|.   +++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999887  899998765  222223333221  12222211 1222   122       235


Q ss_pred             CCEEEEcCCCCCC-C--CCCHH---hHHHHHHH----HHHHHHHHHHhhCCCeEEEEec
Q 018265          115 MDIVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       115 aDiVIi~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      .|+||+++|.... +  +.+..   ..+..|+.    +++.+.+.+++....+.+++++
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            6999999886321 1  22222   23445543    3345555555544446666654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.046  Score=50.49  Aligned_cols=158  Identities=18%  Similarity=0.197  Sum_probs=82.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  112 (358)
                      +..++.|+||+|.+|+.++..|+..|.  ++++++++. ......++...  ...+..+.. -+|   .++++       
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   80 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEKE   80 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            446899999999999999999999887  899999865 22222223221  112222111 122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CC---CHHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          113 TGMDIVIIPAGVPRKP---GM---TRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~---~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ...|+||+.+|.....   ..   .....+..|+.....+.+.+..+   ...+.+++++.-....           ...
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~  149 (263)
T PRK08226         81 GRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM-----------VAD  149 (263)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc-----------cCC
Confidence            3569999999863211   11   12234556666555555544332   2234566554421100           112


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +..-.++.+......+-+.+|+.+.  +..+++..+
T Consensus       150 ~~~~~Y~~sK~a~~~~~~~la~~~~--~~~i~v~~i  183 (263)
T PRK08226        150 PGETAYALTKAAIVGLTKSLAVEYA--QSGIRVNAI  183 (263)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            2223344443333445666776664  334544433

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.73  E-value=0.0063  Score=58.62  Aligned_cols=120  Identities=20%  Similarity=0.250  Sum_probs=70.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHH---HHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA---DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~---dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|+|+ |.||+.++..|.+.+.  .+.++-+.+. ...-.   .+.+.......... ..++ .+.+..+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~-~~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVV-AATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccccc-cccC-hhhcCCCCEEEEEe
Confidence            79999998 9999999999999983  6666654431 11100   11111110111111 1223 46678999999985


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE-EEeeec
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL-LGVTML  194 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv-iG~t~l  194 (358)
                      -.                --..+..+.+..+. |+++|+..=|=++..-     .+++.  +|.+++ .|+|..
T Consensus        76 Ka----------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-----~l~~~--~~~~~il~G~~~~  126 (307)
T COG1893          76 KA----------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE-----ELRKI--LPKETVLGGVTTH  126 (307)
T ss_pred             cc----------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-----HHHHh--CCcceEEEEEeee
Confidence            32                12334555666655 6778888888887763     33443  555555 467643

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.73  E-value=0.012  Score=55.96  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=48.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +||++||- |.+|+..+..|+..|+  ++..+|++..+. +..+.....    ..   ..++.++.++||+||.+.
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga----~~---a~s~~eaa~~aDvVitmv   65 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA----TV---AASPAEAAAEADVVITML   65 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC----cc---cCCHHHHHHhCCEEEEec
Confidence            58999998 9999999999999998  999999986332 222322111    11   234578999999999984

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.72  E-value=0.0045  Score=61.23  Aligned_cols=75  Identities=23%  Similarity=0.250  Sum_probs=50.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCC-CeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +|||.|||| |+||+.++..|++.+. .+|.+.|+... ...+.+..+.... ..+... ....+.+++++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence            479999998 9999999999999875 59999998742 2222222211110 112111 12345788999999999864

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=96.72  E-value=0.011  Score=55.35  Aligned_cols=91  Identities=14%  Similarity=0.181  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..|||+|||+ |.+|++++..|...+..  .++..+|.+...     +       ....   ..+..++++++|+||++.
T Consensus         2 ~~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav   65 (260)
T PTZ00431          2 ENIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV   65 (260)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe
Confidence            3589999998 99999999999887642  358888875411     0       0111   234467789999999983


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                        +              -..+.++++.+..+-++..||...+-+.
T Consensus        66 --k--------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 --K--------------PDLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             --C--------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence              1              1334444445544322334555556555

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.70  E-value=0.015  Score=57.35  Aligned_cols=57  Identities=23%  Similarity=0.250  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .++||+|||.+|.+|..++..|.... ..+|..+|.+          |.          ..+++++++++||+||++.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence            35699999988999999999998752 3388889863          11          1235578899999999984

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.69  E-value=0.043  Score=50.56  Aligned_cols=155  Identities=16%  Similarity=0.119  Sum_probs=83.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh------
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  112 (358)
                      .+.+++.|+||+|.+|++++..|+..|.  +|+++|++. ......++....  ..+..+. .-+|   .++++      
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEA   81 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            4456899999999999999999999887  899999875 222222332211  1221110 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCC--CC--CCCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 -TGMDIVIIPAGVPR--KP--GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 -~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       .+.|++|+.+|...  .+  ..+.   ...+..|+    .+.+.+.+.+.+.. .+.|++++.....            
T Consensus        82 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~------------  148 (260)
T PRK12823         82 FGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSSIATR------------  148 (260)
T ss_pred             cCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcCcccc------------
Confidence             36799999987531  11  1121   12234444    34456666665443 3456666542210            


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       + +..-.++.+......+.+.++..+.  +..|++..+
T Consensus       149 -~-~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  183 (260)
T PRK12823        149 -G-INRVPYSAAKGGVNALTASLAFEYA--EHGIRVNAV  183 (260)
T ss_pred             -C-CCCCccHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence             1 1122466665445567777777763  344544444

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.033  Score=52.98  Aligned_cols=172  Identities=17%  Similarity=0.076  Sum_probs=88.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeC-CCc---HHhh------
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLG-QQQ---LEDA------  111 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a------  111 (358)
                      .+.++|.|+||+|.+|++++..|+..|.  ++++++++...  ....++........+..+.. -.|   .+++      
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   91 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA   91 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            3456899999999999999999999887  88999886522  11223331111112222111 112   2222      


Q ss_pred             -hCCCCEEEEcCCCCCCCC-C---CHHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCcc-HHHHHHHHHHhC
Q 018265          112 -LTGMDIVIIPAGVPRKPG-M---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNST-VPIAAEVFKKVG  181 (358)
Q Consensus       112 -l~~aDiVIi~ag~~~~~g-~---~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~-t~~~~~~~~~~~  181 (358)
                       +...|+||+.||....+. .   .-...+..|...    .+.+.+.+++.. .+.|+++|...... ...-..-.....
T Consensus        92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS~~~~~~~~~~~~~~~~~~  170 (306)
T PRK06197         92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSSGGHRIRAAIHFDDLQWER  170 (306)
T ss_pred             hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECCHHHhccCCCCccccCccc
Confidence             235899999998632111 1   112234455444    666677666543 45666665432110 000000000000


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+++...++.+.+....+.+.+++.+.  ...+++.++.
T Consensus       171 ~~~~~~~Y~~SK~a~~~~~~~la~~l~--~~~i~v~~v~  207 (306)
T PRK06197        171 RYNRVAAYGQSKLANLLFTYELQRRLA--AAGATTIAVA  207 (306)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhh--cCCCCeEEEE
Confidence            122233455555555667777787764  3344444443

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.038  Score=51.27  Aligned_cols=99  Identities=16%  Similarity=0.205  Sum_probs=58.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      .++.|+||+|.+|.+++..++..|.  ++++++.+....... ..+.. ...+.. .+...+..+.+...|++|+.||..
T Consensus        15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~-~~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSES-NDESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhh-hccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            5899999999999999999999887  889998865111111 11111 111111 111123445667899999999864


Q ss_pred             CCCCCCH---HhHHHHHHHHHHHHHHH
Q 018265          126 RKPGMTR---DDLFNINAGIVKTLCEG  149 (358)
Q Consensus       126 ~~~g~~r---~~~~~~N~~i~~~i~~~  149 (358)
                      .....+.   .+.+..|+.....+++.
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~  117 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLEL  117 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHH
Confidence            3222222   33455666544444443

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.053  Score=49.55  Aligned_cols=157  Identities=16%  Similarity=0.156  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCC---cHHhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQ---QLEDA------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~---d~~~a------  111 (358)
                      +..+|.|+||+|++|++++..|+..+.  ++++...+.   ......++....  ..+..+. .-+   +...+      
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   80 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAKKRAEEMNETLKMVKENG--GEGIGVLADVSTREGCETLAKATID   80 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHcC--CeeEEEEeccCCHHHHHHHHHHHHH
Confidence            345899999999999999999998887  666654332   111122222111  1111110 011   11122      


Q ss_pred             -hCCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          112 -LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       112 -l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                       +...|+||+++|.....   +.+.   ...+..|......+++.+.++- ..+.+++++.-..            +.+.
T Consensus        81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~------------~~~~  148 (252)
T PRK06077         81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG------------IRPA  148 (252)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc------------cCCC
Confidence             34679999999863221   1122   1233445444444444443332 2356666553221            1123


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +....++.+......+...+++.++  + .+++.++.
T Consensus       149 ~~~~~Y~~sK~~~~~~~~~l~~~~~--~-~i~v~~v~  182 (252)
T PRK06077        149 YGLSIYGAMKAAVINLTKYLALELA--P-KIRVNAIA  182 (252)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHh--c-CCEEEEEe
Confidence            3334455544444456666777764  2 45544443

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.65  E-value=0.017  Score=55.69  Aligned_cols=103  Identities=19%  Similarity=0.257  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      .+.+||+|+|+ |.+|..++..+...+. .+|.++|++..+  ..+..+.     ..+..   ..++++++.++|+||.+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~a  245 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISA  245 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEEC
Confidence            45679999998 9999999988887553 489999987522  2222221     11111   13567889999999998


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t  170 (358)
                      .+.+..            ..++.+..+..  .....+++-+++|-|+-.
T Consensus       246 t~~~~~------------~~~~~~~~~~~--~~~~~~viDlavPrdi~~  280 (311)
T cd05213         246 TGAPHY------------AKIVERAMKKR--SGKPRLIVDLAVPRDIEP  280 (311)
T ss_pred             CCCCch------------HHHHHHHHhhC--CCCCeEEEEeCCCCCCch
Confidence            775521            11112211111  123567888899999763

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.65  E-value=0.0096  Score=56.37  Aligned_cols=156  Identities=21%  Similarity=0.217  Sum_probs=93.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (358)
                      |||.|+|++|++|+.+...+. .+.  +++-.|...     +|+.+..            ...+.++  .-|+||++|.+
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            679999999999999998887 434  777776543     4444322            1234444  56999999987


Q ss_pred             CC--CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCC-CccHHHHHHHHHHhCC-CCCCcEEEeeeccHHHH
Q 018265          125 PR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPV-NSTVPIAAEVFKKVGT-YDPKRLLGVTMLDVVRA  199 (358)
Q Consensus       125 ~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~-d~~t~~~~~~~~~~~~-~p~~kviG~t~lds~R~  199 (358)
                      ..  +...++..-+.-|+.....+++..++++  +++|.+| -.| |--..   . -++... -.|.+++|-+.+-...+
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~---~-~Y~E~D~~~P~nvYG~sKl~GE~~  134 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKG---G-PYKETDTPNPLNVYGRSKLAGEEA  134 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCC---C-CCCCCCCCCChhhhhHHHHHHHHH
Confidence            54  2233466667889999999999999874  5555553 333 00000   0 011111 23567888886655433


Q ss_pred             HHHHHHHhCCCCCCC--ceEEEEecCCCccc-cccccc
Q 018265          200 NTFVAEVLGLDPREV--DVPVVGGHAGVTIL-PLLSQV  234 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v--~~~v~G~hg~~~~v-p~~s~~  234 (358)
                      -.    ..+ +..-|  ..||+|++|. +.+ +.+..+
T Consensus       135 v~----~~~-~~~~I~Rtswv~g~~g~-nFv~tml~la  166 (281)
T COG1091         135 VR----AAG-PRHLILRTSWVYGEYGN-NFVKTMLRLA  166 (281)
T ss_pred             HH----HhC-CCEEEEEeeeeecCCCC-CHHHHHHHHh
Confidence            22    222 22222  5799999986 443 334433

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.64  E-value=0.13  Score=47.69  Aligned_cols=156  Identities=12%  Similarity=0.174  Sum_probs=83.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCcH---H-------
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQL---E-------  109 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~-------  109 (358)
                      ++..+|.|+||++.+|.+++..|+..|.  .|++.+...   ......++.... ...+..+. .-+|.   +       
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~   82 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEPETYKELFKKID   82 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            4556899999999999999999999887  788775432   222233333211 11222211 11221   1       


Q ss_pred             hhhCCCCEEEEcCCCCCC-------C--CCCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHH
Q 018265          110 DALTGMDIVIIPAGVPRK-------P--GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA  173 (358)
Q Consensus       110 ~al~~aDiVIi~ag~~~~-------~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~  173 (358)
                      +.+...|++|..+|....       +  ..+.   ...+..|+    ...+.+.+.+++. +.+.|++++...+..    
T Consensus        83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~----  157 (260)
T PRK08416         83 EDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKV-GGGSIISLSSTGNLV----  157 (260)
T ss_pred             HhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhcc-CCEEEEEEecccccc----
Confidence            113468999999875311       1  0011   11223333    2344555555432 345677766543222    


Q ss_pred             HHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceE
Q 018265          174 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (358)
Q Consensus       174 ~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~  217 (358)
                              ..|..-.++.+......+...++..++  +..|++.
T Consensus       158 --------~~~~~~~Y~asK~a~~~~~~~la~el~--~~gi~v~  191 (260)
T PRK08416        158 --------YIENYAGHGTSKAAVETMVKYAATELG--EKNIRVN  191 (260)
T ss_pred             --------CCCCcccchhhHHHHHHHHHHHHHHhh--hhCeEEE
Confidence                    122223466666566667788888774  3445443

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.64  E-value=0.023  Score=54.62  Aligned_cols=115  Identities=12%  Similarity=0.059  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-----  113 (358)
                      +..+|.|+||+|.+|.+++..|+..|.  +|++++++..  .....++...  ...+..+. .-+|   .+++++     
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL   80 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999886  8999997652  2222333211  11222211 1112   222232     


Q ss_pred             --CCCEEEEcCCCCCC----CCCC---HHhHHHHHHH----HHHHHHHHHHhhCC-CeEEEEec
Q 018265          114 --GMDIVIIPAGVPRK----PGMT---RDDLFNINAG----IVKTLCEGIAKCCP-KAIVNLIS  163 (358)
Q Consensus       114 --~aDiVIi~ag~~~~----~g~~---r~~~~~~N~~----i~~~i~~~i~~~~p-~a~viv~t  163 (358)
                        ..|++|+.||....    ...+   -...+..|..    +.+.+.+.+.+... .+.|++++
T Consensus        81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence              48999999985321    1112   1233455654    44444555554432 34666665

>PRK09186 flagellin modification protein A; Provisional

Probab=96.63  E-value=0.025  Score=51.96  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  ++++.+++.
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            456899999999999999999999887  889998765

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=96.63  E-value=0.1  Score=47.27  Aligned_cols=144  Identities=15%  Similarity=0.157  Sum_probs=75.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCc------HHhhhCCCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ------LEDALTGMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d------~~~al~~aDiVI  119 (358)
                      |+|+|+||+|.+|+.++..|+..+....+++.+.+....    ..    ...+..+. .-+|      ..+.+...|+||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999998875433667666544211    11    11121111 0111      223356889999


Q ss_pred             EcCCCCCCC---------CCCHH---hHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          120 IPAGVPRKP---------GMTRD---DLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       120 i~ag~~~~~---------g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      +++|.....         ..+..   ..+..|+    .+.+.+.+.+++.. .+.++++|.......        . ..+
T Consensus        73 ~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~-~~~i~~iss~~~~~~--------~-~~~  142 (235)
T PRK09009         73 NCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSE-SAKFAVISAKVGSIS--------D-NRL  142 (235)
T ss_pred             ECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccC-CceEEEEeecccccc--------c-CCC
Confidence            999875321         11111   1233333    44455555554332 245666553222210        0 012


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                      +..-.++.+......|-..++..++
T Consensus       143 ~~~~~Y~asK~a~~~~~~~la~e~~  167 (235)
T PRK09009        143 GGWYSYRASKAALNMFLKTLSIEWQ  167 (235)
T ss_pred             CCcchhhhhHHHHHHHHHHHHHHhh
Confidence            3334566654444456677777664

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.63  E-value=0.011  Score=56.68  Aligned_cols=64  Identities=16%  Similarity=0.252  Sum_probs=44.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC---CCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a  122 (358)
                      |||+|||. |.+|+.++..|+..+.  +|.++|+++..  ..++.+..    +..   ..++++.++.   +|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            58999998 9999999999998887  89999987522  22232211    111   2345555554   69988874

>PLN03139 formate dehydrogenase; Provisional

Probab=96.62  E-value=0.023  Score=56.48  Aligned_cols=101  Identities=21%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|+|. |.||+.++..+..-|.  +|+.+|.........  .+.    .+..   ..++++.+++||+|++..
T Consensus       196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~l  263 (386)
T PLN03139        196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINT  263 (386)
T ss_pred             CCCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeC
Confidence            455679999998 9999999999987666  889999764211111  111    1111   236889999999999974


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec--CCCCc
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  168 (358)
                      -..           ..+-.++.  .+.+....|.+++||++  ..+|.
T Consensus       264 Plt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe  298 (386)
T PLN03139        264 PLT-----------EKTRGMFN--KERIAKMKKGVLIVNNARGAIMDT  298 (386)
T ss_pred             CCC-----------HHHHHHhC--HHHHhhCCCCeEEEECCCCchhhH
Confidence            221           11222221  23444445788999975  44443

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.0089  Score=54.67  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +|+|.|+||+|.+|.+++..|+..|.  ++++++++.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            46999999999999999999998887  889998765

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.60  E-value=0.064  Score=48.98  Aligned_cols=146  Identities=15%  Similarity=0.179  Sum_probs=74.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCc--hhHHHHHhcCCCCCeEEEEeC----CCcHHhhh------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFLG----QQQLEDAL------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~~--~g~~~dl~~~~~~~~v~~~~~----t~d~~~al------  112 (358)
                      .++|.|+||+|.+|+.++..|+..|.  ++++. +.+..  .....++....  ..+..+..    ..+...++      
T Consensus         4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (250)
T PRK08063          4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEE   79 (250)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999886  76654 44331  22222333221  12222111    11222223      


Q ss_pred             -CCCCEEEEcCCCCC-CC--CCCHH---hHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 -TGMDIVIIPAGVPR-KP--GMTRD---DLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 -~~aDiVIi~ag~~~-~~--g~~r~---~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       ...|+||+.+|... .+  ..+..   ..+..|......+++.+.++   .+.+.++++|.-...            .+
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~  147 (250)
T PRK08063         80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSI------------RY  147 (250)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhc------------cC
Confidence             35899999987532 11  11111   12345555444455444433   234566666542211            12


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHh
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l  207 (358)
                      .+..-.++.+......+-..++..+
T Consensus       148 ~~~~~~y~~sK~a~~~~~~~~~~~~  172 (250)
T PRK08063        148 LENYTTVGVSKAALEALTRYLAVEL  172 (250)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHH
Confidence            2333345555444445555556554

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.60  E-value=0.034  Score=50.35  Aligned_cols=151  Identities=16%  Similarity=0.100  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc-HH---hhhCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ-LE---DALTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d-~~---~al~~aDiVI  119 (358)
                      +.+++.|+||+|.+|++++..|++.|.  +++++|++....    .   .  ..+..+.. -+| .+   +.+...|+||
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~---~--~~~~~~~~D~~~~~~~~~~~~~~id~lv   72 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----L---S--GNFHFLQLDLSDDLEPLFDWVPSVDILC   72 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----c---C--CcEEEEECChHHHHHHHHHhhCCCCEEE
Confidence            345899999999999999999999887  899998864210    0   0  11111111 011 12   2345789999


Q ss_pred             EcCCCCCC--C--CCCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 018265          120 IPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       120 i~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      +.+|....  +  ..+.   ...+..|+.....+.+.+...   .+.+.+++++......            +.+..-.+
T Consensus        73 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~~~~~Y  140 (235)
T PRK06550         73 NTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFV------------AGGGGAAY  140 (235)
T ss_pred             ECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc------------CCCCCccc
Confidence            99986421  1  1111   223555655444444444321   2335566655332111            22223345


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+......+...+++.++  +..+++.++-
T Consensus       141 ~~sK~a~~~~~~~la~~~~--~~gi~v~~v~  169 (235)
T PRK06550        141 TASKHALAGFTKQLALDYA--KDGIQVFGIA  169 (235)
T ss_pred             HHHHHHHHHHHHHHHHHhh--hcCeEEEEEe
Confidence            5554333445677777763  3455544443

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.06  Score=52.25  Aligned_cols=115  Identities=17%  Similarity=0.103  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  112 (358)
                      +..+|+|+||+|.+|..++..|+..|.  +|++++++.  +.....++....  ..+..+. .-+|   .++++      
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999987  899999876  222233343221  1221110 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  164 (358)
                       ...|++|+.+|.....   ..+   -...+..|+-.    .+...+.+.+.. .+.+|+++.
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS  143 (330)
T PRK06139         82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS  143 (330)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence             4679999999864321   111   12234455443    344444454432 456666554

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.16  Score=46.25  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++.++|.|+||+|.+|.+++..|+..|.  .|++++++.
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            3446899999999999999999999887  899999876

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.59  E-value=0.0042  Score=57.14  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=31.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |+|+|+|+ |.+|+++|..|...|.  +++++|.++
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDE   33 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCH
Confidence            69999998 9999999999999988  999999986

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.057  Score=49.76  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ...+.|+||+|.+|++++..|+..|.  ++++.|.+.
T Consensus         8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~   42 (254)
T PRK06114          8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT   42 (254)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            34899999999999999999999887  899999764

>PRK08324 short chain dehydrogenase; Validated

Probab=96.58  E-value=0.041  Score=58.76  Aligned_cols=115  Identities=22%  Similarity=0.275  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|+.++..|+..|.  +|+++|++.  ......++...   ..+..+. .-+|   .++++      
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~  495 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA  495 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999998887  899999876  22222223221   1111111 1122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  164 (358)
                       .+.|+||.++|.....   ..+.   ...+..|...    ++...+.+++....+.+++++.
T Consensus       496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             3689999999864321   1111   1223444444    4444555554333356666654

>PLN00016 RNA-binding protein; Provisional

Probab=96.56  E-value=0.026  Score=55.66  Aligned_cols=100  Identities=20%  Similarity=0.189  Sum_probs=59.0

Q ss_pred             CCEEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHH------HHhcCCCCCeEEEEeC-CCcHHhhh--
Q 018265           46 GFKVAVL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA------DISHMDTNAVVRGFLG-QQQLEDAL--  112 (358)
Q Consensus        46 ~~KI~Ii----Ga~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~------dl~~~~~~~~v~~~~~-t~d~~~al--  112 (358)
                      ++||.|+    ||+|++|++++..|+..|.  +|++++++......+      ++.+.. ...++.+.+ -.|+++.+  
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~~~~~  128 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKTVWGDPADVKSKVAG  128 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCCcchhhhccCchhhhhHhh-hcCceEEEecHHHHHhhhcc
Confidence            4689999    9999999999999999887  999998865211100      011100 011222211 12334444  


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      .++|+||.+++..              ....+.+++.+++.+.+ .+|++|
T Consensus       129 ~~~d~Vi~~~~~~--------------~~~~~~ll~aa~~~gvk-r~V~~S  164 (378)
T PLN00016        129 AGFDVVYDNNGKD--------------LDEVEPVADWAKSPGLK-QFLFCS  164 (378)
T ss_pred             CCccEEEeCCCCC--------------HHHHHHHHHHHHHcCCC-EEEEEc
Confidence            5799999886421              23345566666665443 445444

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.56  E-value=0.016  Score=56.51  Aligned_cols=100  Identities=20%  Similarity=0.251  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.||+.+|..+...|.  +|..+|.......  +....     +.    ..++++.+++||+|++..
T Consensus       147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~~-----~~----~~~l~ell~~aDiV~l~l  212 (333)
T PRK13243        147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKELG-----AE----YRPLEELLRESDFVSLHV  212 (333)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHcC-----CE----ecCHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999987776  8999997642211  11111     11    125788899999999985


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec--CCCCcc
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNST  169 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~~  169 (358)
                      -..           ..+-.++.+  +.+....|++++||++  ..+|.-
T Consensus       213 P~t-----------~~T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~~  248 (333)
T PRK13243        213 PLT-----------KETYHMINE--ERLKLMKPTAILVNTARGKVVDTK  248 (333)
T ss_pred             CCC-----------hHHhhccCH--HHHhcCCCCeEEEECcCchhcCHH
Confidence            321           111222211  2333334789999985  555543

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.56  E-value=0.0076  Score=57.64  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=47.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +||+|||. |.+|..++..|+..+.  +|.++|++...  ..++....    ..   ...++.+++++||+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~---~~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----AT---PAASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Cc---ccCCHHHHHhcCCEEEEec
Confidence            48999998 9999999999999887  89999987522  22232211    11   1245678899999999984

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.55  E-value=0.075  Score=48.94  Aligned_cols=157  Identities=13%  Similarity=0.168  Sum_probs=82.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhh-------hCCCCE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGMDI  117 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a-------l~~aDi  117 (358)
                      .+++.|+||+|.+|.+++..|+..|.  ++++.+.+.. ....++.+... ..+.. .+...+.+++       +...|+
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999887  7887765431 11222322110 00110 1011122222       236799


Q ss_pred             EEEcCCCCCC-C--CCCH---HhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          118 VIIPAGVPRK-P--GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       118 VIi~ag~~~~-~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      ||+++|.... +  ..+.   ...+..|+.-    .+.+.+.+++. ..+.||+++......           ...+..-
T Consensus        83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS~~~~~-----------~~~~~~~  150 (255)
T PRK06463         83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIASNAGIG-----------TAAEGTT  150 (255)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHHhCC-----------CCCCCcc
Confidence            9999987432 1  1122   1234445444    56666666543 345666665422110           0112223


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .++.+......+-+.++..++  +..|++.++.
T Consensus       151 ~Y~asKaa~~~~~~~la~e~~--~~~i~v~~i~  181 (255)
T PRK06463        151 FYAITKAGIIILTRRLAFELG--KYGIRVNAVA  181 (255)
T ss_pred             HhHHHHHHHHHHHHHHHHHhh--hcCeEEEEEe
Confidence            355554444456666776653  4456555554

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.54  E-value=0.022  Score=50.51  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=61.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      |||+||||+|.+|+.++.....+|.  |++-+=++..+-.+  ++.... ..++  + .-+.+.+++.|-|+||-.-|..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~--~~~~~i~q~Di--f-d~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAA--RQGVTILQKDI--F-DLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccc--cccceeecccc--c-ChhhhHhhhcCCceEEEeccCC
Confidence            7999999999999999999999998  88888766521111  010000 0111  1 1123457899999999986644


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      . ++.  .   ..-.+-...+...++... ...++++.
T Consensus        74 ~-~~~--~---~~~~k~~~~li~~l~~ag-v~RllVVG  104 (211)
T COG2910          74 A-SDN--D---ELHSKSIEALIEALKGAG-VPRLLVVG  104 (211)
T ss_pred             C-CCh--h---HHHHHHHHHHHHHHhhcC-CeeEEEEc
Confidence            2 121  1   112233555555665433 45677764

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.54  E-value=0.045  Score=49.47  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=31.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++|.|+||+|.+|+.++..|+..|.  +|+++|++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999999887  899999876

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.53  E-value=0.034  Score=53.73  Aligned_cols=93  Identities=18%  Similarity=0.242  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ....+|+|+|. |.||+.++..|..-|.  ++..+|.......           .+..+....++++++++||+|+++..
T Consensus       134 l~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~-----------~~~~~~~~~~l~e~l~~aDvvv~~lP  199 (312)
T PRK15469        134 REDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP-----------GVQSFAGREELSAFLSQTRVLINLLP  199 (312)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC-----------CceeecccccHHHHHhcCCEEEECCC
Confidence            34469999998 9999999999987777  8999997431100           00111112467899999999999843


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ..           ..|-.++.  .+.+.+..|++++||++
T Consensus       200 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        200 NT-----------PETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             CC-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence            21           12233332  23444445789999986

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.53  E-value=0.041  Score=52.86  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=68.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC-------CCCC-eEEEEeCCCcHHhhhCCCCE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-------DTNA-VVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~-------~~~~-~v~~~~~t~d~~~al~~aDi  117 (358)
                      .|||+|+|+ |.||..++..|...|.  ++.++++...  ....+...       .... .+...  ..+ .+.....|+
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~--~~~~i~~~~Gl~i~~~g~~~~~~~~--~~~-~~~~~~~D~   73 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQ--RLAAYQQAGGLTLVEQGQASLYAIP--AET-ADAAEPIHR   73 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechH--HHHHHhhcCCeEEeeCCcceeeccC--CCC-cccccccCE
Confidence            479999998 9999999999998886  8999987531  11111110       0000 11111  111 123568899


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      ||++.-.            ..    ..+.++.+..+ .+++.|+.+-|=++....+     +++  ++.+++++-
T Consensus        74 viv~vK~------------~~----~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l-----~~~--~~~~~v~~g  125 (305)
T PRK05708         74 LLLACKA------------YD----AEPAVASLAHRLAPGAELLLLQNGLGSQDAV-----AAR--VPHARCIFA  125 (305)
T ss_pred             EEEECCH------------Hh----HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH-----HHh--CCCCcEEEE
Confidence            9998521            11    22333444443 3788888888988876432     333  566677655

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=96.53  E-value=0.007  Score=57.19  Aligned_cols=150  Identities=13%  Similarity=0.089  Sum_probs=84.5

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEEEcCCCCCC
Q 018265           50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGVPRK  127 (358)
Q Consensus        50 ~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~~~~  127 (358)
                      .|+||+|+||++++..|+..+.  +++++....    ..|+.+            ..++++.++  ++|+||++|+....
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~   62 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTR------------QADVEAFFAKEKPTYVILAAAKVGG   62 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCC------------HHHHHHHHhccCCCEEEEeeeeecc
Confidence            3899999999999999988776  444443211    112211            123444444  57999999875321


Q ss_pred             ---CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-------CCccHHHHHHHHH-HhCCCCCCcEEEeeeccH
Q 018265          128 ---PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-------VNSTVPIAAEVFK-KVGTYDPKRLLGVTMLDV  196 (358)
Q Consensus       128 ---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-------~d~~t~~~~~~~~-~~~~~p~~kviG~t~lds  196 (358)
                         ......+....|......+++.+++.... .+|+.|.-       .....    |-.. ..+.-|....+|.+....
T Consensus        63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~----E~~~~~~~~~p~~~~Y~~sK~~~  137 (306)
T PLN02725         63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAPQPIP----ETALLTGPPEPTNEWYAIAKIAG  137 (306)
T ss_pred             cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCCCCCC----HHHhccCCCCCCcchHHHHHHHH
Confidence               12234567788999999999999987543 34444321       11111    1000 001111122366665555


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          197 VRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       197 ~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      .++...+.+..+++...++ ..++|.+
T Consensus       138 e~~~~~~~~~~~~~~~~~R~~~vyG~~  164 (306)
T PLN02725        138 IKMCQAYRIQYGWDAISGMPTNLYGPH  164 (306)
T ss_pred             HHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            5555555666677655554 4578864

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.50  E-value=0.021  Score=51.50  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..||+|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            4458999998 9999999999999886 4999999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.12  Score=47.87  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcHH---h-------h
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQLE---D-------A  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~-------a  111 (358)
                      +...+.|+||+|.+|.+++..|+..|.  .|++++++.  ......++........+..+. .-+|.+   +       .
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999887  899999876  222223333221111222211 112221   1       2


Q ss_pred             hCCCCEEEEcCCCCCCC---CCCH---HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      +...|++|+.+|.....   ..+.   ...+..|    ....+.+.+.+++. ..+.|++++.-
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  147 (265)
T PRK07062         85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNSL  147 (265)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEeccc
Confidence            34579999999864311   1111   1122333    34456666666543 34566666543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.49  E-value=0.011  Score=49.49  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            459999998 9999999999999886 5999999875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.49  E-value=0.11  Score=47.54  Aligned_cols=155  Identities=15%  Similarity=0.134  Sum_probs=78.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-C---CCcHHhh-------h
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-G---QQQLEDA-------L  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~---t~d~~~a-------l  112 (358)
                      ++|.|+||+|.+|+.++..|+..+.  ++++.+.+.   ......++....  .++..+. .   ..+.+++       +
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW--SVGINYARDAAAAEETADAVRAAG--GRACVVAGDVANEADVIAMFDAVQSAF   78 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            4899999999999999999999886  777765433   222223333221  1222111 1   1122222       2


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCHH---hHHHHHHHHH----HHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHH
Q 018265          113 TGMDIVIIPAGVPRK--P--GMTRD---DLFNINAGIV----KTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~--~--g~~r~---~~~~~N~~i~----~~i~~~i~~~~--p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      ...|++|+.+|....  +  ..+..   ..+..|....    +.+.+.+....  +.+.+|+++......          
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~----------  148 (248)
T PRK06947         79 GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRL----------  148 (248)
T ss_pred             CCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcC----------
Confidence            368999999985321  1  12222   2244554433    34444443221  245677666543221          


Q ss_pred             hCCCCCC-cEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          180 VGTYDPK-RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       180 ~~~~p~~-kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                        +.+.. ..++.+......+-..+++.+.  +..+++.++
T Consensus       149 --~~~~~~~~Y~~sK~~~~~~~~~la~~~~--~~~i~v~~i  185 (248)
T PRK06947        149 --GSPNEYVDYAGSKGAVDTLTLGLAKELG--PHGVRVNAV  185 (248)
T ss_pred             --CCCCCCcccHhhHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence              11111 2355554444456666777663  344544433

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.49  E-value=0.013  Score=49.91  Aligned_cols=74  Identities=20%  Similarity=0.295  Sum_probs=49.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      .+.+||+|+|+ |.+|..++..+...+ ..++.++|.+..  ...+.++...  .....    ..|.++.++++|+||++
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~Dvvi~~   88 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--GIAIA----YLDLEELLAEADLIINT   88 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--cccee----ecchhhccccCCEEEeC
Confidence            34569999998 999999999998876 348999998752  2222222211  00111    13456668999999998


Q ss_pred             CCCC
Q 018265          122 AGVP  125 (358)
Q Consensus       122 ag~~  125 (358)
                      ....
T Consensus        89 ~~~~   92 (155)
T cd01065          89 TPVG   92 (155)
T ss_pred             cCCC
Confidence            6543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.49  E-value=0.0073  Score=55.04  Aligned_cols=104  Identities=19%  Similarity=0.277  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------chhHHH---HHhcCC-CC------CeEEEEeCCCcHHh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTA---DISHMD-TN------AVVRGFLGQQQLED  110 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~------~~g~~~---dl~~~~-~~------~~v~~~~~t~d~~~  110 (358)
                      -||+|+|. |.+|+..|..++..|+  ++.|||+.+      +.....   +|+... ..      ..+..++++++++|
T Consensus         4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            48999997 9999999999999999  999999976      122222   333221 11      11222456788999


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCcc
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~  169 (358)
                      +.++|=.|-.++              .+-+.+-+++.+++.+.. |+.  |..|.....+
T Consensus        81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~m  124 (313)
T KOG2305|consen   81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT--ILASSTSTFM  124 (313)
T ss_pred             HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce--EEeccccccC
Confidence            999885443342              334566677788888765 544  4445444444

>PRK12743 oxidoreductase; Provisional

Probab=96.48  E-value=0.13  Score=47.49  Aligned_cols=146  Identities=14%  Similarity=0.086  Sum_probs=75.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCcH---Hhhh-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQL---EDAL-------  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------  112 (358)
                      .+|.|+||+|.+|++++..|+..|.  ++++++...   ......++....  ..+..+. .-+|.   +.++       
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3799999999999999999999987  887775433   112222333221  1222211 11222   1222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHH----hhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ...|+||+.+|.....   ..+   -...+..|+.....+.+.+.    +....+.+++++.-....            +
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~  146 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT------------P  146 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC------------C
Confidence            3579999998864321   111   12334555554444444433    333346677766532211            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                      .+..-.++.+......+.+.++..+.
T Consensus       147 ~~~~~~Y~~sK~a~~~l~~~la~~~~  172 (256)
T PRK12743        147 LPGASAYTAAKHALGGLTKAMALELV  172 (256)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            22223444443333445566666653

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.48  E-value=0.012  Score=52.48  Aligned_cols=76  Identities=20%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe--CCCcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL--GQQQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi  120 (358)
                      +.+||.|+||+|.+|..++..|...+.  ++.+++++..  .....++.+.. ...+....  ...+..++++++|+||.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            345999999889999999999988775  8999987652  22222232111 12222211  11234578899999888


Q ss_pred             cCC
Q 018265          121 PAG  123 (358)
Q Consensus       121 ~ag  123 (358)
                      +..
T Consensus       104 at~  106 (194)
T cd01078         104 AGA  106 (194)
T ss_pred             CCC
Confidence            754

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.039  Score=50.78  Aligned_cols=143  Identities=19%  Similarity=0.160  Sum_probs=76.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-------  113 (358)
                      .++.|+||+|.+|..++..|+..|.  +++++|++..  .....++..    ..+..+. .-.|   +..++.       
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGD----ARFVPVACDLTDAASLAAALANAAAERG   76 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999998886  8999998652  112222321    1111110 1122   222332       


Q ss_pred             CCCEEEEcCCCCCCCC---CCH---HhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      +.|+||+++|......   .+.   ...+..|......+.+.+...   ...+.+++++......          ..+. 
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------~~~~-  145 (257)
T PRK07074         77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMA----------ALGH-  145 (257)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcC----------CCCC-
Confidence            5799999988643211   111   122345555444444444321   2345566655422110          0111 


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhC
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                        -.++.+.....++...+++.++
T Consensus       146 --~~y~~sK~a~~~~~~~~a~~~~  167 (257)
T PRK07074        146 --PAYSAAKAGLIHYTKLLAVEYG  167 (257)
T ss_pred             --cccHHHHHHHHHHHHHHHHHHh
Confidence              2355554444566677777764

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.47  E-value=0.016  Score=54.18  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||+ |.+|++++..|...++ ...+.++|.+...  ..++.+..  ..+..   ..|..+++++||+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~---~~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRI---AKDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceE---eCCHHHHHHhCCEEEEEe
Confidence            58999998 9999999999988774 3456778765422  22222211  11222   235667789999999985

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.46  E-value=0.014  Score=48.54  Aligned_cols=72  Identities=22%  Similarity=0.328  Sum_probs=44.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhH-HHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV-TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~-~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|+|++|.+|+.++..+...+-..=+..+|.+.  ..|. .-++.... ...+..   +.|+++.++.+|+||-..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v---~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPV---TDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBE---BS-HHHHTTH-SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Cccccc---chhHHHhcccCCEEEEcC
Confidence            699999999999999999998854332345566654  1221 12222221 122222   368889999999888763

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.46  E-value=0.0091  Score=55.71  Aligned_cols=107  Identities=21%  Similarity=0.318  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--chh------HHHHHhcCCCCCeEEEEeCCCc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPG------VTADISHMDTNAVVRGFLGQQQ  107 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~----~~~-----~el~L~D~~~--~~g------~~~dl~~~~~~~~v~~~~~t~d  107 (358)
                      +..||++.|| |..|-.++.+|...    |+-     ..++|+|.+.  ..+      ....+.+... + ...   ..+
T Consensus        24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~-~-~~~---~~~   97 (255)
T PF03949_consen   24 SDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTN-P-EKD---WGS   97 (255)
T ss_dssp             GG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSS-T-TT-----SS
T ss_pred             HHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCc-c-ccc---ccC
Confidence            3458999999 99999999877654    763     7899999875  111      1222222211 1 111   147


Q ss_pred             HHhhhCCC--CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC--ccHH
Q 018265          108 LEDALTGM--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVP  171 (358)
Q Consensus       108 ~~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~  171 (358)
                      +.|+++++  |++|=+.+.+   |           -+-+++++.|.+++++.+|+=.|||..  -.++
T Consensus        98 L~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p  151 (255)
T PF03949_consen   98 LLEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP  151 (255)
T ss_dssp             HHHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred             HHHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence            89999999  9988887643   2           245788889999999999988999997  6653

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.056  Score=49.74  Aligned_cols=157  Identities=18%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhh-------h
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------L  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l  112 (358)
                      ..++.|+||+|.+|.+++..|+..|.  +|++.+++.  .+....++....  ..+..+.. -+|   .+++       +
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999887  899999875  222223333221  12222111 112   2222       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ...|++|+.+|.....   ..+.   ...+..|+....    .+.+.+.+....+.+++++.-....           ..
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------~~  153 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHI-----------IN  153 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcC-----------CC
Confidence            4789999999864321   1121   223345554433    4444444433335566554321110           11


Q ss_pred             CCCC-cEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPK-RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~-kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .|.. -.++.+...-..+-+.+|+.+.  +..|++..+
T Consensus       154 ~~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~vn~i  189 (253)
T PRK05867        154 VPQQVSHYCASKAAVIHLTKAMAVELA--PHKIRVNSV  189 (253)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHHh--HhCeEEEEe
Confidence            1211 2355554444456677777663  344544443

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.46  E-value=0.0096  Score=55.22  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  ++++.|.+.
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            345899999999999999999999887  899999865

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.44  E-value=0.058  Score=53.16  Aligned_cols=123  Identities=19%  Similarity=0.235  Sum_probs=72.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc------hhHH------HH--HhcCCCCCeEEEEeCCCcHHhhh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVT------AD--ISHMDTNAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~------~g~~------~d--l~~~~~~~~v~~~~~t~d~~~al  112 (358)
                      ++|+|||- |+||..+|..++..|.  .++-+|+|+.      .|..      .|  +.......+++.   |+|+ +.+
T Consensus        10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~l   82 (436)
T COG0677          10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EEL   82 (436)
T ss_pred             eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hhc
Confidence            79999998 9999999999999998  9999999871      1110      01  111111123443   5787 457


Q ss_pred             CCCCEEEEcCCCCCCC-CCCHHhHHHHHHHHHHHHHHHHHhhCCCeE--EEEecCCCCccHHHHHHHHHHhCCC
Q 018265          113 TGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAI--VNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~--viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      +.||++|++.-.|.+. .+..+       ..+.+-++.|.++-.++-  |+=.|-|....-.++--.+...+|+
T Consensus        83 ~~~dv~iI~VPTPl~~~~~pDl-------s~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL  149 (436)
T COG0677          83 KECDVFIICVPTPLKKYREPDL-------SYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL  149 (436)
T ss_pred             ccCCEEEEEecCCcCCCCCCCh-------HHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC
Confidence            8999999997766543 22233       333344444444443332  3333677766544432223333444

>PRK06196 oxidoreductase; Provisional

Probab=96.43  E-value=0.041  Score=52.69  Aligned_cols=115  Identities=19%  Similarity=0.135  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCC-CCeEEEEeCCCcHHhh-------hC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDT-NAVVRGFLGQQQLEDA-------LT  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~-~~~v~~~~~t~d~~~a-------l~  113 (358)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|++++++...  ....++..... ..++.   ...+.+++       +.
T Consensus        24 l~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~---d~~~v~~~~~~~~~~~~   98 (315)
T PRK06196         24 LSGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLA---DLESVRAFAERFLDSGR   98 (315)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCC---CHHHHHHHHHHHHhcCC
Confidence            3446899999999999999999999887  89999987521  11222221110 01111   01111121       24


Q ss_pred             CCCEEEEcCCCCCCCC----CCHHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecC
Q 018265          114 GMDIVIIPAGVPRKPG----MTRDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g----~~r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +.|++|+.+|....+.    ..-...+..|..    +.+.+.+.+++.. .+.|+++|.
T Consensus        99 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  156 (315)
T PRK06196         99 RIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS  156 (315)
T ss_pred             CCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            6899999998643221    112223444544    4566666665543 456776654

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.42  E-value=0.02  Score=54.22  Aligned_cols=101  Identities=23%  Similarity=0.332  Sum_probs=70.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--ch------hHHHHHhcCCCCCeEEEEeCCCcH
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TP------GVTADISHMDTNAVVRGFLGQQQL  108 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~----~~~-----~el~L~D~~~--~~------g~~~dl~~~~~~~~v~~~~~t~d~  108 (358)
                      ..||+|.|| |..|..++.+|...    |+-     ..++++|.+.  ..      .....+.+.. ..  .   ...++
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~~--~---~~~~L   97 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-EE--K---EGKSL   97 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-Cc--c---cCCCH
Confidence            469999999 99999999877654    652     5899999875  11      1111122111 11  1   13578


Q ss_pred             HhhhC--CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          109 EDALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       109 ~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      .++++  ++|++|=+.+.+   |           -+-+++.+.|.+++++.+|+-.|||..
T Consensus        98 ~e~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312          98 LEVVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             HHHHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            99999  999988775533   2           234678888889999999998999986

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.41  E-value=0.024  Score=55.06  Aligned_cols=67  Identities=18%  Similarity=0.180  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .+.+||+|||. |.+|.+++..|...|.  +++..+.+.....  +......   +..    .+..+++++||+|+++.
T Consensus        15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~--~~A~~~G---~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSW--KKAEADG---FEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhH--HHHHHCC---Cee----CCHHHHHhcCCEEEEcC
Confidence            45579999998 9999999999999887  8887776532111  1111111   111    25678999999999984

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.018  Score=52.31  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=30.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ||+.|+||+|.+|++++..|+..|.  ++++++++.
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999998887  899998865

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.022  Score=52.52  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..+|.|+||+|.+|.+++..++..|.  +++++|++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            446899999999999999999999887  899999875

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.39  E-value=0.095  Score=48.70  Aligned_cols=32  Identities=25%  Similarity=0.227  Sum_probs=27.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~   81 (358)
                      .+.|+||+|.+|++++..|+..|.  +|++.+.+
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            689999999999999999999887  88887543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.38  E-value=0.029  Score=51.93  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..++.|+||+|.+|++++..|+..|.  +|+++|++.
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999887  899999875

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.38  E-value=0.019  Score=54.54  Aligned_cols=68  Identities=24%  Similarity=0.308  Sum_probs=42.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-HHHHhcCCCCCeEEEEeCCCc-HHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLGQQQ-LEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d-~~~al~~aDiVIi~a  122 (358)
                      .+||+|+|. |.+|..++..|...++  .+..++.+...+. .....-.....      .+.+ ..++.++||+||++.
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~------~~~~~~~~~~~~aD~Vivav   72 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDE------LTVAGLAEAAAEADLVIVAV   72 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCcccc------cccchhhhhcccCCEEEEec
Confidence            579999998 9999999999999998  5555555441111 11111000000      0112 257789999999984

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.38  E-value=0.05  Score=51.99  Aligned_cols=79  Identities=29%  Similarity=0.385  Sum_probs=49.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhh-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-----  111 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-----  111 (358)
                      .+.+++.|+||+|.+|..++..|+..|.  .+++.|...   ....+.++....  ..+..+.. -+|   .++.     
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~   85 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAV   85 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHH
Confidence            3446899999999999999999999887  899998754   222223333211  22222111 112   2222     


Q ss_pred             -hCCCCEEEEcCCCCC
Q 018265          112 -LTGMDIVIIPAGVPR  126 (358)
Q Consensus       112 -l~~aDiVIi~ag~~~  126 (358)
                       +...|++|+.+|...
T Consensus        86 ~~g~iD~li~nAG~~~  101 (306)
T PRK07792         86 GLGGLDIVVNNAGITR  101 (306)
T ss_pred             HhCCCCEEEECCCCCC
Confidence             235899999999754

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.37  E-value=0.029  Score=52.80  Aligned_cols=69  Identities=14%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +|||+|||. |.+|..++..+...+ ...-+.++|.+..  .+.++.+. ..  ...   .+|+++.+.++|+|++++.
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~--~a~~~a~~-~~--~~~---~~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLE--KAENLASK-TG--AKA---CLSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHH--HHHHHHHh-cC--Cee---ECCHHHHhcCCCEEEEcCC
Confidence            479999998 999999998887754 2223567887642  12222221 11  122   2467777799999999863

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.16  Score=46.18  Aligned_cols=156  Identities=15%  Similarity=0.125  Sum_probs=80.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCe-EEE-EeCCCcHHhhh-------CCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAV-VRG-FLGQQQLEDAL-------TGM  115 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~-v~~-~~~t~d~~~al-------~~a  115 (358)
                      .+.|+||+|.+|++++..|+..|.  .+++.+.+.   ......++........ +.. .+...++++++       ...
T Consensus         4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            689999999999999999998886  777777543   1111222322111111 111 11112223333       267


Q ss_pred             CEEEEcCCCCCCC----CCCH---HhHHHHHHHHHHHHH----HHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          116 DIVIIPAGVPRKP----GMTR---DDLFNINAGIVKTLC----EGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       116 DiVIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~----~~i~~~~--p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      |+||+++|.....    ..+.   ...+..|+.....+.    +.+.+..  .++.+++++......            +
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------~  149 (248)
T PRK06123         82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARL------------G  149 (248)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcC------------C
Confidence            9999999864321    1121   233556666544444    3333221  235667666654222            1


Q ss_pred             CCCC-cEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPK-RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~-kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .|.. -.++.+......+...+++.++  +..+++.++
T Consensus       150 ~~~~~~~Y~~sKaa~~~~~~~la~~~~--~~~i~v~~i  185 (248)
T PRK06123        150 SPGEYIDYAASKGAIDTMTIGLAKEVA--AEGIRVNAV  185 (248)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            1211 1255554444456677777763  344554443

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.32  E-value=0.13  Score=48.94  Aligned_cols=120  Identities=18%  Similarity=0.238  Sum_probs=78.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE----eCCCcHH-------hhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLE-------DAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~----~~t~d~~-------~al  112 (358)
                      .+-|+|+||+.-+|.++|+.++..|.  .++|+-...  ++-...++.......++...    +...+.+       .-+
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            44799999999999999999999997  778887655  22222444443221112211    1112222       235


Q ss_pred             CCCCEEEEcCCCCCCCCC-C------HHhHHHH----HHHHHHHHHHHHHhhCCCeEEEEecCCCCcc
Q 018265          113 TGMDIVIIPAGVPRKPGM-T------RDDLFNI----NAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~-~------r~~~~~~----N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  169 (358)
                      .+.|+.|..||+.+ .+. +      ....+..    .+-..+...+.+++.. ++.|+++++....+
T Consensus        90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~  155 (282)
T KOG1205|consen   90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKM  155 (282)
T ss_pred             CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccccc
Confidence            78999999999887 331 1      1223333    4678888999998877 79988888777665

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.32  E-value=0.017  Score=55.26  Aligned_cols=63  Identities=17%  Similarity=0.318  Sum_probs=45.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||. |.+|+.++..|+..|+  ++.++|++..   ..++....    ...   ..+..++.++||+||++.
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999999987  8889998642   12232211    111   134567789999999984

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.26  E-value=0.033  Score=52.44  Aligned_cols=96  Identities=16%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++||++||+ |++|.+++..|...+.  ..+|...|.+...  ..++.... ...  .   ++|..++...+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~--~~~l~~~~-g~~--~---~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEK--RAALAAEY-GVV--T---TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHH--HHHHHHHc-CCc--c---cCcHHHHHhhCCEEEEEe-
Confidence            479999998 9999999999998883  3588888876422  11333221 111  1   345578899999999985 


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                         ||            ..+.++++.++...++..||-+.-.+
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv   98 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGV   98 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCC
Confidence               33            45667777777644565666555444

>PRK05599 hypothetical protein; Provisional

Probab=96.25  E-value=0.25  Score=45.36  Aligned_cols=153  Identities=12%  Similarity=0.148  Sum_probs=83.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---H-------HhhhC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---L-------EDALT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al~  113 (358)
                      |.+.|+||++.+|..++..|++ +.  .+++.+++.  ++....++..... ..+..+.. -+|   .       .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-GE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-CC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            4589999999999999999984 64  899999865  3333344443211 11111110 011   1       12234


Q ss_pred             CCCEEEEcCCCCCCCC---CCH---HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      .-|++|+.+|......   .+.   .+....|    ..+.+.+.+.+.+...++.|+++|.-....            +.
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~  144 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR------------AR  144 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc------------CC
Confidence            6899999988643211   111   1222223    333445556665544457777776654332            12


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~  217 (358)
                      |..-.++.+.-....+...++..++  ...|++.
T Consensus       145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~  176 (246)
T PRK05599        145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLI  176 (246)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEE
Confidence            2233566655444566777777764  3445443

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.075  Score=56.10  Aligned_cols=118  Identities=16%  Similarity=0.160  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCcHHhhhC--
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLEDALT--  113 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~--  113 (358)
                      ...+.+++.|+||+|.+|.+++..|+..|.  +|++++++.  ......++....  ..+..+.    ...+.+++++  
T Consensus       367 ~~~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~  442 (657)
T PRK07201        367 GPLVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDI  442 (657)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            344556899999999999999999999887  899999875  222222332211  1222211    1112233333  


Q ss_pred             -----CCCEEEEcCCCCCCCC--------CCHHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 018265          114 -----GMDIVIIPAGVPRKPG--------MTRDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       114 -----~aDiVIi~ag~~~~~g--------~~r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  164 (358)
                           ..|++|+.+|......        ++-...+..|+...    +.+.+.+++. ..+.++++|.
T Consensus       443 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  509 (657)
T PRK07201        443 LAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS  509 (657)
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence                 6899999998642111        01123345565544    4444444443 3456666654

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=96.25  E-value=0.047  Score=52.40  Aligned_cols=104  Identities=19%  Similarity=0.131  Sum_probs=67.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---ch--hHHHHHhcCCCCCeEEEEeCC-CcHHhhh------C
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TP--GVTADISHMDTNAVVRGFLGQ-QQLEDAL------T  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~--g~~~dl~~~~~~~~v~~~~~t-~d~~~al------~  113 (358)
                      ..+|.|+||+|+||++.+..|+..|.  +++.+|...   ..  ..+..+.+.  ...+....+. .| .+++      .
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D-~~~L~kvF~~~   76 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLND-AEALEKLFSEV   76 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCC-HHHHHHHHhhc
Confidence            35899999999999999999999998  999999754   11  112222221  1223322111 12 2222      3


Q ss_pred             CCCEEEEcCCCCC-CCC-CCHHhHHHHHHHHHHHHHHHHHhhC
Q 018265          114 GMDIVIIPAGVPR-KPG-MTRDDLFNINAGIVKTLCEGIAKCC  154 (358)
Q Consensus       114 ~aDiVIi~ag~~~-~~g-~~r~~~~~~N~~i~~~i~~~i~~~~  154 (358)
                      .-|-|++.|+... .+. +....+...|+--...+.+.+++++
T Consensus        77 ~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~  119 (343)
T KOG1371|consen   77 KFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN  119 (343)
T ss_pred             CCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence            4688999876432 111 2346667788888999999999887

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.24  E-value=0.056  Score=47.61  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=29.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ||+|+|+ |.+|+.++..|+..|+ .+++|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899998 9999999999999886 4899999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=96.23  E-value=0.05  Score=49.39  Aligned_cols=114  Identities=15%  Similarity=0.136  Sum_probs=62.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhh-------hCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LTG  114 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l~~  114 (358)
                      |.|+||+|.+|.+++..|++.|.  ++++++...   ......++.+..  .++..+.. -+|   .+++       +..
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999887  788887543   122222333221  12222111 112   2222       234


Q ss_pred             CCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCC
Q 018265          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPV  166 (358)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~  166 (358)
                      -|.+|..+|......   .+   -...+..|+.....+.+.+    .+..+.+.++++|...
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            588999888643221   12   2334556665544444432    2223456677766654

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.23  E-value=0.13  Score=46.86  Aligned_cols=114  Identities=17%  Similarity=0.149  Sum_probs=60.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCCc--hhHHHHHhcCCCCCeEEEEe-CCCc---HHhh-------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------  111 (358)
                      .+.+.|+|++|.+|..++..|+..|.  .+++.. .+..  .....++....  ..+..+. .-+|   .+++       
T Consensus         3 ~k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (246)
T PRK12938          3 QRIAYVTGGMGGIGTSICQRLHKDGF--KVVAGCGPNSPRRVKWLEDQKALG--FDFIASEGNVGDWDSTKAAFDKVKAE   78 (246)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999886  777753 3221  11122222211  1111111 1122   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 018265          112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +...|+||+++|.....   ..+   -...+..|....    +.+.+.+.+. +.+.+++++.
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS  140 (246)
T PRK12938         79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISS  140 (246)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEEec
Confidence            24689999999875321   111   223355565553    3444444332 3356666654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.22  E-value=0.023  Score=54.26  Aligned_cols=97  Identities=23%  Similarity=0.250  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      ...||+|+|+ |.+|..++..|...|.  +|.++|++...  .........    ..+ ...++.+.++++|+||.+...
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~--~~~~~~~g~----~~~-~~~~l~~~l~~aDiVint~P~  219 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSAD--LARITEMGL----IPF-PLNKLEEKVAEIDIVINTIPA  219 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCCC----eee-cHHHHHHHhccCCEEEECCCh
Confidence            3458999998 9999999999988886  89999986521  111111111    111 123567888999999998521


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCCCcc
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNST  169 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~~  169 (358)
                      .         ++  +    .+   .+....|+++++.+ ++|-.+-
T Consensus       220 ~---------ii--~----~~---~l~~~k~~aliIDlas~Pg~td  247 (287)
T TIGR02853       220 L---------VL--T----AD---VLSKLPKHAVIIDLASKPGGTD  247 (287)
T ss_pred             H---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCCC
Confidence            1         11  1    12   22333467888877 5887654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.056  Score=48.86  Aligned_cols=35  Identities=23%  Similarity=0.137  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .++|.|+||+|.+|+.++..|+..|.  ++++++++.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            45899999999999999999999887  899998865

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.22  E-value=0.037  Score=59.54  Aligned_cols=67  Identities=22%  Similarity=0.424  Sum_probs=47.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .||+|||+ |.+|..++..+...++..+|..+|.+... ..+.+   ...  ...   ..+++.++++++|+||++.
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~---~g~--~~~---~~~~~~~~~~~aDvVilav   71 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS---LGV--IDR---GEEDLAEAVSGADVIVLAV   71 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH---CCC--CCc---ccCCHHHHhcCCCEEEECC
Confidence            58999998 99999999999988754479999987522 11221   111  000   1346678899999999985

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.062  Score=48.91  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++++.|+|++|.+|..++..|+.+|.  .|+++|++.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   40 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQ   40 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999887  899999875

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.21  E-value=0.049  Score=54.75  Aligned_cols=132  Identities=19%  Similarity=0.131  Sum_probs=79.4

Q ss_pred             cchhhHHHHHHHhh--cCCCcccc--ccccccccccccC----------C-CCCCCCCEEEEEcCCCchHHHHHHHHHhC
Q 018265            5 TSGANQRIARIAAH--LHPPTLQI--EGESSGLGRMDCR----------A-KGGSPGFKVAVLGAAGGIGQPLAMLMKIN   69 (358)
Q Consensus         5 ~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~----------~-~~~~~~~KI~IiGa~G~vG~~~a~~l~~~   69 (358)
                      |.+--+|+.+++..  |.=|.+-+  +-..++|-..-+.          . .......+|+|+|. |.+|..++..+...
T Consensus       156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~  234 (425)
T PRK05476        156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGL  234 (425)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhC
Confidence            56667888888664  66676654  2333343322111          1 11235569999998 99999999999888


Q ss_pred             CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHH
Q 018265           70 PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG  149 (358)
Q Consensus        70 ~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~  149 (358)
                      |.  +|+.+|++..+.... ..+.   ..  .    .+++++++++|+||.+.|.+               .++..  +.
T Consensus       235 Ga--~ViV~d~dp~ra~~A-~~~G---~~--v----~~l~eal~~aDVVI~aTG~~---------------~vI~~--~~  285 (425)
T PRK05476        235 GA--RVIVTEVDPICALQA-AMDG---FR--V----MTMEEAAELGDIFVTATGNK---------------DVITA--EH  285 (425)
T ss_pred             CC--EEEEEcCCchhhHHH-HhcC---CE--e----cCHHHHHhCCCEEEECCCCH---------------HHHHH--HH
Confidence            87  899999886322111 0111   11  1    13578899999999875421               22221  12


Q ss_pred             HHhhCCCeEEEEecCCC
Q 018265          150 IAKCCPKAIVNLISNPV  166 (358)
Q Consensus       150 i~~~~p~a~viv~tNP~  166 (358)
                      +....+.+++++++-+-
T Consensus       286 ~~~mK~GailiNvG~~d  302 (425)
T PRK05476        286 MEAMKDGAILANIGHFD  302 (425)
T ss_pred             HhcCCCCCEEEEcCCCC
Confidence            22233678999987543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.21  E-value=0.046  Score=49.79  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..||+|+|+ |.+|+.++..|+..|+ .++.|+|.+.
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            3458999998 9999999999999887 4899999883

>PLN02712 arogenate dehydrogenase

Probab=96.19  E-value=0.039  Score=58.65  Aligned_cols=68  Identities=18%  Similarity=0.252  Sum_probs=47.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC-CCCEEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVII  120 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi  120 (358)
                      .+.++|||+|||. |.+|..++..|...|.  +|+.+|.+.....+.++   .    +..   .+++++.+. ++|+||+
T Consensus       365 ~~~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~---~~~~~el~~~~aDvVIL  431 (667)
T PLN02712        365 NDGSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSY---FSDADDLCEEHPEVILL  431 (667)
T ss_pred             CCCCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeE---eCCHHHHHhcCCCEEEE
Confidence            4456789999998 9999999999988776  89999987421111111   1    112   245666665 5999999


Q ss_pred             cC
Q 018265          121 PA  122 (358)
Q Consensus       121 ~a  122 (358)
                      +.
T Consensus       432 av  433 (667)
T PLN02712        432 CT  433 (667)
T ss_pred             CC
Confidence            84

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.18  E-value=0.11  Score=48.49  Aligned_cols=160  Identities=14%  Similarity=0.180  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCe-EEE-EeCCCcHHhh-------h
Q 018265           45 PGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAV-VRG-FLGQQQLEDA-------L  112 (358)
Q Consensus        45 ~~~KI~IiGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~-v~~-~~~t~d~~~a-------l  112 (358)
                      +.+.+.|+||++  .+|..++..|++.|.  .|++.|.+. ......++........ +.. .+...+.+.+       +
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   82 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW   82 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc
Confidence            345789999953  699999999999887  888888764 2223333332111011 100 0001112211       2


Q ss_pred             CCCCEEEEcCCCCCCC--------CCCHH---hHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 TGMDIVIIPAGVPRKP--------GMTRD---DLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~--------g~~r~---~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      -..|++|+.+|.....        ..+..   ..+..|+.....+.+.+... .+.+.|+++|.-....           
T Consensus        83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~-----------  151 (262)
T PRK07984         83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-----------  151 (262)
T ss_pred             CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC-----------
Confidence            3479999999864211        11222   22344544333333333221 2356777766432211           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.|..-.|+.+...-..+-+.+|..++  +..|++..+-
T Consensus       152 -~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~i~  188 (262)
T PRK07984        152 -AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  188 (262)
T ss_pred             -CCCCcchhHHHHHHHHHHHHHHHHHhc--ccCcEEeeee
Confidence             123333566665555667788888774  4556555444

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.17  E-value=0.022  Score=58.01  Aligned_cols=102  Identities=14%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC-CCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~-~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      +|+|||. |.+|.+++..|+..|.  +|.++|++..+  +.++... .....+.......++.++++++|+||++.-   
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~---   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK---   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence            4899998 9999999999999998  99999987522  2223321 001112222111233334568999888742   


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC--CCCcc
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN--PVNST  169 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN--P~d~~  169 (358)
                       +|           +.+.++.+.+..+- ++.+||..+|  |.+..
T Consensus        73 -~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~  106 (467)
T TIGR00873        73 -AG-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTE  106 (467)
T ss_pred             -Cc-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHH
Confidence             11           22333444454443 6677888876  44433

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.17  E-value=0.11  Score=48.23  Aligned_cols=116  Identities=14%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe----CCCcHHhhh----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL----GQQQLEDAL----  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~----~t~d~~~al----  112 (358)
                      +.++|.|+||+|.+|.+++..++..+ .  .|++++++..   .....++.... ...+..+.    ...+.++.+    
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence            34589999999999999999998874 5  8899988752   22233443321 11222211    111211112    


Q ss_pred             --CCCCEEEEcCCCCCCCCC---CH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecC
Q 018265          113 --TGMDIVIIPAGVPRKPGM---TR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~g~---~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                        .+.|++|+.+|.......   +.   .+.+..|+.    +.+.+.+.+.+.. .+.++++|.
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~-~~~iv~isS  146 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIAMSS  146 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC-CceEEEEec
Confidence              379999998876532111   11   123556654    3345666666554 355666554

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.15  E-value=0.024  Score=53.25  Aligned_cols=33  Identities=12%  Similarity=0.245  Sum_probs=29.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ||.|+||+|++|++++..|+..+.  ++..+.++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~   33 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS   33 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            589999999999999999998887  888888765

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.15  E-value=0.054  Score=49.83  Aligned_cols=100  Identities=23%  Similarity=0.321  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC----chh-----HHHHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN----TPG-----VTADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~----~~g-----~~~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      +..||+|+|| |..|..++..|...|. .++|.++|++.    ...     ...++.+......   .  ..++.+++++
T Consensus        24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~~   97 (226)
T cd05311          24 EEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALKG   97 (226)
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHhc
Confidence            3469999999 9999999999988775 23799999983    111     1122221110011   1  1256788999


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                      +|+||.+.+    +|+-       +    .+..+.+   +++.+++..+||...
T Consensus        98 ~dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~e  133 (226)
T cd05311          98 ADVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVPE  133 (226)
T ss_pred             CCEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence            999999764    2431       1    2333333   366777777899753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN02494 adenosylhomocysteinase

Probab=96.15  E-value=0.06  Score=54.56  Aligned_cols=133  Identities=19%  Similarity=0.175  Sum_probs=82.8

Q ss_pred             CcchhhHHHHHHHhh--cCCCcccccc--cccccccccc-----------CCCCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 018265            4 PTSGANQRIARIAAH--LHPPTLQIEG--ESSGLGRMDC-----------RAKGGSPGFKVAVLGAAGGIGQPLAMLMKI   68 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~   68 (358)
                      -|.+--+|+.+++..  |.-|.+-+.-  ....|-.+-.           .---.....+|+|+|. |.+|..++..+..
T Consensus       197 eTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka  275 (477)
T PLN02494        197 ETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMKA  275 (477)
T ss_pred             cccHHHHHHHHHHHCCCCCCCEEEEcChhhhhhhhccccccccHHHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHHH
Confidence            467778999998765  8888776622  2222322111           1011134569999998 9999999999987


Q ss_pred             CCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHH
Q 018265           69 NPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC  147 (358)
Q Consensus        69 ~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~  147 (358)
                      .|.  .|+.+|++... ..+.  .+. +  .  .    .+++++++++|+||.+.|..               .++.  .
T Consensus       276 ~Ga--~VIV~e~dp~r~~eA~--~~G-~--~--v----v~leEal~~ADVVI~tTGt~---------------~vI~--~  325 (477)
T PLN02494        276 AGA--RVIVTEIDPICALQAL--MEG-Y--Q--V----LTLEDVVSEADIFVTTTGNK---------------DIIM--V  325 (477)
T ss_pred             CCC--EEEEEeCCchhhHHHH--hcC-C--e--e----ccHHHHHhhCCEEEECCCCc---------------cchH--H
Confidence            776  89999987622 2222  111 1  1  1    13568899999999875532               1110  1


Q ss_pred             HHHHhhCCCeEEEEecCCCC
Q 018265          148 EGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       148 ~~i~~~~p~a~viv~tNP~d  167 (358)
                      +.+....|.++++|++-+-+
T Consensus       326 e~L~~MK~GAiLiNvGr~~~  345 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDN  345 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCC
Confidence            23333447899999987643

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.15  E-value=0.021  Score=52.05  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=57.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCCCCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVPRK  127 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~  127 (358)
                      |+|+||+|.+|+.++..|+..+.  +|..+=++........|.+... ..+.. +....++.++|+|+|.||++.+... 
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSH-   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence            78999999999999999999765  6777665542223334444321 11211 0111456778999999999865332 


Q ss_pred             CCCCHHhHHHHHHHHHHHHHHHHHhhC
Q 018265          128 PGMTRDDLFNINAGIVKTLCEGIAKCC  154 (358)
Q Consensus       128 ~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (358)
                        ..       -.+....++++..+.+
T Consensus        77 --~~-------~~~~~~~li~Aa~~ag   94 (233)
T PF05368_consen   77 --PS-------ELEQQKNLIDAAKAAG   94 (233)
T ss_dssp             --CC-------HHHHHHHHHHHHHHHT
T ss_pred             --hh-------hhhhhhhHHHhhhccc
Confidence              11       1344556666776665

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.072  Score=49.15  Aligned_cols=113  Identities=14%  Similarity=0.153  Sum_probs=62.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  112 (358)
                      +++.|+||+|.+|++++..|...+.  .+++.+...   ......++....  ..+..+. .-+|   ..+++       
T Consensus        10 k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~~   85 (258)
T PRK09134         10 RAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAAL   85 (258)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999998886  777776543   111222222211  2222211 1122   22233       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhC---CCeEEEEec
Q 018265          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLIS  163 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~t  163 (358)
                      ...|+||+++|.....   ..+   -...+..|+.-...+++.+..+.   ..+.+++++
T Consensus        86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~  145 (258)
T PRK09134         86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMI  145 (258)
T ss_pred             CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEEC
Confidence            3469999999864321   112   22345667665555555554432   234555543

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.09  E-value=0.0045  Score=57.67  Aligned_cols=121  Identities=19%  Similarity=0.228  Sum_probs=78.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC----C-----CcEEEEEeCCCc--hh------HHHHHhcCCCCCeEEEEeCCCcH
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINP----L-----VSVLHLYDVVNT--PG------VTADISHMDTNAVVRGFLGQQQL  108 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~----~-----~~el~L~D~~~~--~g------~~~dl~~~~~~~~v~~~~~t~d~  108 (358)
                      ..||+|.|| |..|-.++.+|...+    +     ...++++|...+  .+      ....+.+.. .. -.   ...|+
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~-~~-~~---~~~~L   98 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA-NP-ER---ESGDL   98 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc-Cc-cc---ccCCH
Confidence            469999999 999999998886543    2     148999998751  11      011111010 11 11   12578


Q ss_pred             HhhhC--CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC--ccHHHHHHHHHHhCCCC
Q 018265          109 EDALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYD  184 (358)
Q Consensus       109 ~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~~~~~p  184 (358)
                      .++++  ++|++|=+.+.+   |           -+.+++.+.|.+++++.+|+=.|||..  -.++   +-.++.+  +
T Consensus        99 ~eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~  159 (254)
T cd00762          99 EDAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--E  159 (254)
T ss_pred             HHHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--C
Confidence            99999  999988776544   2           244678888888999999988899996  4443   2234433  1


Q ss_pred             CCcEEEe
Q 018265          185 PKRLLGV  191 (358)
Q Consensus       185 ~~kviG~  191 (358)
                      -+.+++.
T Consensus       160 G~ai~At  166 (254)
T cd00762         160 GRAIFAS  166 (254)
T ss_pred             CCEEEEE
Confidence            2467777

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.07  E-value=0.062  Score=45.37  Aligned_cols=33  Identities=24%  Similarity=0.498  Sum_probs=29.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899998 9999999999999887 4899999874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.07  E-value=0.089  Score=52.71  Aligned_cols=131  Identities=18%  Similarity=0.148  Sum_probs=80.1

Q ss_pred             CcchhhHHHHHHHhh--cCCCcccccc--ccccccccccC-----------CCCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 018265            4 PTSGANQRIARIAAH--LHPPTLQIEG--ESSGLGRMDCR-----------AKGGSPGFKVAVLGAAGGIGQPLAMLMKI   68 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~-----------~~~~~~~~KI~IiGa~G~vG~~~a~~l~~   68 (358)
                      -|.+--+|+.+++.+  |.=|.+-+.-  -..+|-.+-++           -.......+|+|+|+ |.+|..++..+..
T Consensus       145 eTttGv~rl~~~~~~~~l~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~  223 (413)
T cd00401         145 ETTTGVHRLYKMEKEGKLKFPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRG  223 (413)
T ss_pred             cchHHHHHHHHHHHCCCCCCCEEEecchhhcccccccchhchhhHHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHH
Confidence            366677899888765  7667665522  22233322110           011234569999998 9999999999988


Q ss_pred             CCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHH
Q 018265           69 NPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC  147 (358)
Q Consensus        69 ~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~  147 (358)
                      .|.  .++.+|+++.+ ..+.++  .   .  ..    .+.+++++++|+||.+.|.+               .++..  
T Consensus       224 ~Ga--~ViV~d~d~~R~~~A~~~--G---~--~~----~~~~e~v~~aDVVI~atG~~---------------~~i~~--  273 (413)
T cd00401         224 QGA--RVIVTEVDPICALQAAME--G---Y--EV----MTMEEAVKEGDIFVTTTGNK---------------DIITG--  273 (413)
T ss_pred             CCC--EEEEEECChhhHHHHHhc--C---C--EE----ccHHHHHcCCCEEEECCCCH---------------HHHHH--
Confidence            887  78889987622 222221  1   1  11    12467889999999986532               22221  


Q ss_pred             HHHHhhCCCeEEEEecCC
Q 018265          148 EGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       148 ~~i~~~~p~a~viv~tNP  165 (358)
                      ..+....|.+++++++.+
T Consensus       274 ~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         274 EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             HHHhcCCCCcEEEEeCCC
Confidence            113333478899999865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.06  E-value=0.034  Score=54.16  Aligned_cols=65  Identities=29%  Similarity=0.392  Sum_probs=45.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ...++|+|||. |.+|+.++..|+. +..-+|..+|......    ...     .+.   ...++++++++||+|++..
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~----~~~-----~~~---~~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        144 IKDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAK----AAT-----YVD---YKDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHh----HHh-----hcc---ccCCHHHHHHhCCEEEEeC
Confidence            34568999998 9999999999853 3323899999754211    111     011   1246889999999999985

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.06  E-value=0.076  Score=53.06  Aligned_cols=132  Identities=22%  Similarity=0.176  Sum_probs=79.3

Q ss_pred             CcchhhHHHHHHHhh--cCCCccccccc--cccccccccC----------CCC-CCCCCEEEEEcCCCchHHHHHHHHHh
Q 018265            4 PTSGANQRIARIAAH--LHPPTLQIEGE--SSGLGRMDCR----------AKG-GSPGFKVAVLGAAGGIGQPLAMLMKI   68 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~----------~~~-~~~~~KI~IiGa~G~vG~~~a~~l~~   68 (358)
                      -|.+--+|+.+++..  |.=|.+-+.-+  ..+|-.+-+.          ..+ .....+|+|+|. |.+|..++..+..
T Consensus       138 eTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~  216 (406)
T TIGR00936       138 ETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRARG  216 (406)
T ss_pred             cchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhcccccchhHHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhh
Confidence            367778899988754  77777655222  2222211111          111 245569999998 9999999999987


Q ss_pred             CCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHH
Q 018265           69 NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE  148 (358)
Q Consensus        69 ~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~  148 (358)
                      .|.  +++.+|+++.+.... ..+.   .  ..    .+.+++++++|+||.+.|.               ..++..  +
T Consensus       217 ~Ga--~ViV~d~dp~r~~~A-~~~G---~--~v----~~leeal~~aDVVItaTG~---------------~~vI~~--~  267 (406)
T TIGR00936       217 MGA--RVIVTEVDPIRALEA-AMDG---F--RV----MTMEEAAKIGDIFITATGN---------------KDVIRG--E  267 (406)
T ss_pred             CcC--EEEEEeCChhhHHHH-HhcC---C--Ee----CCHHHHHhcCCEEEECCCC---------------HHHHHH--H
Confidence            776  899999876321111 1111   1  11    1346789999999887542               222222  1


Q ss_pred             HHHhhCCCeEEEEecCC
Q 018265          149 GIAKCCPKAIVNLISNP  165 (358)
Q Consensus       149 ~i~~~~p~a~viv~tNP  165 (358)
                      .+....+.+++++++-+
T Consensus       268 ~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       268 HFENMKDGAIVANIGHF  284 (406)
T ss_pred             HHhcCCCCcEEEEECCC
Confidence            22223367888887654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.05  E-value=0.16  Score=45.96  Aligned_cols=114  Identities=22%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC--CCCCeEEEEeC-CCc---HHhhh-------CC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLG-QQQ---LEDAL-------TG  114 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~--~~~~~v~~~~~-t~d---~~~al-------~~  114 (358)
                      +|.|+|++|.+|++++..|...|.  .+++.|++.. ....++...  .....+..+.. -+|   .++++       ..
T Consensus         4 ~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   80 (245)
T PRK12824          4 IALVTGAKRGIGSAIARELLNDGY--RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP   80 (245)
T ss_pred             EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            789999999999999999998886  8899988742 111111110  01112222211 122   22222       35


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCC
Q 018265          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       115 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP  165 (358)
                      .|++|+.+|.....   ..+   -...+..|+.....+    .+.+++. +.+.+++++..
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~  140 (245)
T PRK12824         81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV  140 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh
Confidence            89999998864211   111   122345555554444    4444443 34577776653

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.22  Score=45.76  Aligned_cols=146  Identities=11%  Similarity=0.049  Sum_probs=78.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhh-------hC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l~  113 (358)
                      +++.|+||+|.+|.+++..|+..|.  .|+++|.+.  ......++....  ..+..+.. -+|   .+++       +.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999887  899999875  222222333211  12222111 122   2221       24


Q ss_pred             CCCEEEEcCCCCCC-C--CCCH---HhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|+||+.+|.... +  ..+.   ...+..|+.....+.+.+    .+....+.++++|.-....            ..
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~  145 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD------------AG  145 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc------------CC
Confidence            67999999875321 1  2222   223455554444444444    3333456777766332111            11


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                      +..-.++.+......+.+.+|..+.
T Consensus       146 ~~~~~Y~~sKaa~~~~~~~la~e~~  170 (252)
T PRK07677        146 PGVIHSAAAKAGVLAMTRTLAVEWG  170 (252)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhC
Confidence            1112344444444456677777764

>PLN02928 oxidoreductase family protein

Probab=96.04  E-value=0.036  Score=54.35  Aligned_cols=104  Identities=23%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHH--hcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl--~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ....+|+|+|. |.||+.++..+..-|.  +|..+|..........+  ................++++.++.||+|++.
T Consensus       157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            44569999998 9999999999987676  99999975311111111  0000000000000124688999999999997


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ....  +         .|-.++.  .+.+.+..|.+++||++
T Consensus       234 lPlt--~---------~T~~li~--~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        234 CTLT--K---------ETAGIVN--DEFLSSMKKGALLVNIA  262 (347)
T ss_pred             CCCC--h---------HhhcccC--HHHHhcCCCCeEEEECC
Confidence            5321  1         1112221  23344445789999986

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.04  E-value=0.03  Score=54.73  Aligned_cols=76  Identities=16%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------------------hhHH--HHHhcCCCCCeEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------------------PGVT--ADISHMDTNAVVRG  101 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---------------------~g~~--~dl~~~~~~~~v~~  101 (358)
                      +..||+|+|+ |.+|+.++..|+..|+ .+|.|+|.+..                     +..+  ..+........+..
T Consensus        23 ~~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         23 REKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            3458999998 9999999999999886 49999998740                     0111  12222222233333


Q ss_pred             EeC---CCcHHhhhCCCCEEEEcC
Q 018265          102 FLG---QQQLEDALTGMDIVIIPA  122 (358)
Q Consensus       102 ~~~---t~d~~~al~~aDiVIi~a  122 (358)
                      +..   ..+.++.++++|+||.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475        101 VVTDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             EeccCCHHHHHHHhcCCCEEEEcC
Confidence            321   134567789999999985

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.03  E-value=0.069  Score=48.65  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..++.|+|++|.+|..++..++..|.  .++++|.+.
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999998887  899999875

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.02  E-value=0.023  Score=53.79  Aligned_cols=71  Identities=25%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      |+++||+|||. |.+|..++..|... +-. +++ ++|.+...  +.++.....  ....   .+|+++.+.++|+|+++
T Consensus         4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~-el~aV~dr~~~~--a~~~a~~~g--~~~~---~~~~eell~~~D~Vvi~   74 (271)
T PRK13302          4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL-TLSAVAVRDPQR--HADFIWGLR--RPPP---VVPLDQLATHADIVVEA   74 (271)
T ss_pred             CCeeEEEEECc-cHHHHHHHHHHHhcCCCe-EEEEEECCCHHH--HHHHHHhcC--CCcc---cCCHHHHhcCCCEEEEC
Confidence            56689999998 99999999888763 222 654 77876422  222221110  0011   24677888999999999


Q ss_pred             CC
Q 018265          122 AG  123 (358)
Q Consensus       122 ag  123 (358)
                      +.
T Consensus        75 tp   76 (271)
T PRK13302         75 AP   76 (271)
T ss_pred             CC
Confidence            64

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.02  E-value=0.042  Score=52.60  Aligned_cols=57  Identities=21%  Similarity=0.335  Sum_probs=46.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+..+|+|||.+|.||..++..|...+.  .+.+++...                       .++++..+.||+||.+.|
T Consensus       157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg  211 (301)
T PRK14194        157 LTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVG  211 (301)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecC
Confidence            3457999999967999999999998887  888886431                       246788999999999987


Q ss_pred             CC
Q 018265          124 VP  125 (358)
Q Consensus       124 ~~  125 (358)
                      .+
T Consensus       212 ~~  213 (301)
T PRK14194        212 RP  213 (301)
T ss_pred             Ch
Confidence            65

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.02  E-value=0.027  Score=53.69  Aligned_cols=77  Identities=21%  Similarity=0.371  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--------------hHHHHHhcCCCCCeEEEEeCCCcHHhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--------------GVTADISHMDTNAVVRGFLGQQQLEDA  111 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--------------g~~~dl~~~~~~~~v~~~~~t~d~~~a  111 (358)
                      ++||+-||| |+||-....-++.+=.-.++.++|++..+              |...=..++. ..++- +  ++|.+.+
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~cr-gknlf-f--stdieka   75 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCR-GKNLF-F--STDIEKA   75 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhc-CCcee-e--ecchHHH
Confidence            369999999 99987766555443222399999987511              1111011221 12222 2  5789999


Q ss_pred             hCCCCEEEEcCCCCCC
Q 018265          112 LTGMDIVIIPAGVPRK  127 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~  127 (358)
                      ++.||+|++....|.|
T Consensus        76 i~eadlvfisvntptk   91 (481)
T KOG2666|consen   76 IKEADLVFISVNTPTK   91 (481)
T ss_pred             hhhcceEEEEecCCcc
Confidence            9999999998877755

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.18  Score=47.07  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=30.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.+.|+||+|.+|++++..|+.+|.  +|++++.+.
T Consensus        11 ~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~   44 (274)
T PRK07775         11 RPALVAGASSGIGAATAIELAAAGF--PVALGARRV   44 (274)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4899999999999999999999887  888888754

>PLN02503 fatty acyl-CoA reductase 2

Probab=96.01  E-value=0.095  Score=55.06  Aligned_cols=112  Identities=15%  Similarity=0.084  Sum_probs=69.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCC--chh--HH-HHHhcC-----------C-----CCCeE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN--TPG--VT-ADISHM-----------D-----TNAVV   99 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~--~~g--~~-~dl~~~-----------~-----~~~~v   99 (358)
                      .+-+.++|.|+||+||+|..++..|+... -..+|.++.+..  ..+  .. .++.+.           .     ...++
T Consensus       115 ~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki  194 (605)
T PLN02503        115 EFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKL  194 (605)
T ss_pred             hhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccE
Confidence            34467899999999999999999888754 345777776643  111  11 111110           0     01233


Q ss_pred             EEEeCC----------CcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC
Q 018265          100 RGFLGQ----------QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (358)
Q Consensus       100 ~~~~~t----------~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (358)
                      ..+.+.          .+++...++.|+||++|+... ...........|+....++++...+..
T Consensus       195 ~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~  258 (605)
T PLN02503        195 VPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK  258 (605)
T ss_pred             EEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            332221          123344478999999987643 234455667889999999999887653

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.28  Score=46.49  Aligned_cols=115  Identities=23%  Similarity=0.263  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE-eCCCcH---Hhh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF-LGQQQL---EDA-------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~-~~t~d~---~~a-------  111 (358)
                      +..+|.|+||+|.+|..++..|+..|.  +|++++++.  ......++...   ..+..+ ..-+|.   +++       
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVER   82 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999987  899999875  22222333211   112111 011222   111       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 018265          112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  164 (358)
                      +...|+||+.+|.....   ..+   -...+..|+.....+++.+..+-  ..+.|++++.
T Consensus        83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            24679999999864311   111   12334556555555444443221  2456666654

>PRK06483 dihydromonapterin reductase; Provisional

Probab=95.99  E-value=0.14  Score=46.53  Aligned_cols=146  Identities=14%  Similarity=0.105  Sum_probs=76.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHH-------hhhCCCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLE-------DALTGMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~-------~al~~aDiV  118 (358)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|.+... ...++.+... ..+.. .....+.+       +.+...|++
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~-~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTHYP-AIDGLRQAGA-QCIQADFSTNAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchh-HHHHHHHcCC-EEEEcCCCCHHHHHHHHHHHHhhCCCccEE
Confidence            4799999999999999999999887  89999986521 1122222110 00100 00001111       112458999


Q ss_pred             EEcCCCCCC--CC-CCH---HhHHHHHHHHH----HHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          119 IIPAGVPRK--PG-MTR---DDLFNINAGIV----KTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       119 Ii~ag~~~~--~g-~~r---~~~~~~N~~i~----~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      |+.+|....  .. .+.   ...+..|+...    +.+.+.+++.. ..+.+++++.-...            .+.+..-
T Consensus        79 v~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~------------~~~~~~~  146 (236)
T PRK06483         79 IHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVE------------KGSDKHI  146 (236)
T ss_pred             EECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhc------------cCCCCCc
Confidence            999986321  11 111   22334444433    34445554432 13455555432110            1233334


Q ss_pred             EEEeeeccHHHHHHHHHHHhC
Q 018265          188 LLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~  208 (358)
                      .++.+...-..+-+.+|+.++
T Consensus       147 ~Y~asKaal~~l~~~~a~e~~  167 (236)
T PRK06483        147 AYAASKAALDNMTLSFAAKLA  167 (236)
T ss_pred             cHHHHHHHHHHHHHHHHHHHC
Confidence            455554444557777888775

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.97  E-value=0.057  Score=52.77  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..||+|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        23 ~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            3458999998 9999999999999886 4999999874

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.93  E-value=0.008  Score=59.48  Aligned_cols=73  Identities=23%  Similarity=0.262  Sum_probs=44.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeC--CCcHHhhhCCCCEEEEcCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLG--QQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~--t~d~~~al~~aDiVIi~ag~  124 (358)
                      |+|+|+ |.+|+.++..|++.....++++.|++..+  ....++. . ..........  ..++.+.++++|+||.++|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~-~-~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLL-G-DRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--T-T-TTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcc-c-cceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789999 99999999999988765599999997622  2222221 1 1111111111  12356788999999999864

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.93  E-value=0.075  Score=49.08  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=29.9

Q ss_pred             CCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ...+.|+||+  +.+|..++..|+..|.  .|++.+++.
T Consensus         7 ~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~   43 (252)
T PRK06079          7 GKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND   43 (252)
T ss_pred             CCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence            3479999997  5899999999999987  889988764

>PRK07578 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.059  Score=47.71  Aligned_cols=101  Identities=21%  Similarity=0.186  Sum_probs=57.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhh---hCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA---LTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a---l~~aDiVIi~ag  123 (358)
                      |++.|+||+|.+|..++..|... .  ++++++++.. ....|+.+.            .+.++.   +...|++|..+|
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~id~lv~~ag   64 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDP------------ASIRALFEKVGKVDAVVSAAG   64 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCCh------------HHHHHHHHhcCCCCEEEECCC
Confidence            58999999999999999999877 3  8899887541 111222211            111222   346899999998


Q ss_pred             CCCC-C--CCCHHh---HHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 018265          124 VPRK-P--GMTRDD---LFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (358)
Q Consensus       124 ~~~~-~--g~~r~~---~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  163 (358)
                      .... +  +.+..+   .+..|+.....+.+....+- +.+.+++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  111 (199)
T PRK07578         65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS  111 (199)
T ss_pred             CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            6421 1  122222   23445544444444433321 345555555

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=95.89  E-value=0.22  Score=45.08  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=27.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~   80 (358)
                      .+.|+||+|.+|+.++..|+..|.  ++++...
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r   32 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG   32 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            578999999999999999998887  7888776

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.89  E-value=0.035  Score=56.84  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC---CCCCeEEEEeCCCcHHhhhCC---CCE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---DTNAVVRGFLGQQQLEDALTG---MDI  117 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~---~~~~~v~~~~~t~d~~~al~~---aDi  117 (358)
                      ...++|++||- |.+|+.++..|+..|+  +|+.+|++..+  +.++.+.   .....+.   ...+++++.+.   +|+
T Consensus         4 ~~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~~~~---~a~s~~e~v~~l~~~dv   75 (493)
T PLN02350          4 AALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNLPLY---GFKDPEDFVLSIQKPRS   75 (493)
T ss_pred             CCCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCcccc---cCCCHHHHHhcCCCCCE
Confidence            34568999998 9999999999999998  99999987522  2222221   0001111   12355666654   999


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCC
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV  166 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~  166 (358)
                      ||++...               -+.+.++...+... .|..++|..||-.
T Consensus        76 Ii~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         76 VIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             EEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence            9997421               12333333333333 3666777776543

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.65  Score=42.31  Aligned_cols=180  Identities=14%  Similarity=0.097  Sum_probs=91.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE-eC---CCcHHh-------h
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF-LG---QQQLED-------A  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~-~~---t~d~~~-------a  111 (358)
                      +...+.|+||++.+|..++..|++.|.  .|++++++.  ......++....  ..+..+ ..   ..+.++       .
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQ   79 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899998876  222222332211  111111 01   112221       1


Q ss_pred             hC-CCCEEEEcCCCCCCC----CCCHHh---HHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          112 LT-GMDIVIIPAGVPRKP----GMTRDD---LFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       112 l~-~aDiVIi~ag~~~~~----g~~r~~---~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      +. .-|++|..+|....+    ..+..+   .+..|.    .+.+...+.+.+....+.|+++|.-..            
T Consensus        80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~------------  147 (227)
T PRK08862         80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDD------------  147 (227)
T ss_pred             hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCC------------
Confidence            23 689999998743211    112211   222332    344455666655444567777764221            


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcC
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNG  255 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~  255 (358)
                         ++..-.++.+.-.-..|.+.++..+.  +..+++-.+        .|-|-.+..  ....+.|+++.+.+...
T Consensus       148 ---~~~~~~Y~asKaal~~~~~~la~el~--~~~Irvn~v--------~PG~i~t~~--~~~~~~~~~~~~~~~~~  208 (227)
T PRK08862        148 ---HQDLTGVESSNALVSGFTHSWAKELT--PFNIRVGGV--------VPSIFSANG--ELDAVHWAEIQDELIRN  208 (227)
T ss_pred             ---CCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE--------ecCcCcCCC--ccCHHHHHHHHHHHHhh
Confidence               11112244443333456677777663  334443222        232222211  23345677776655544

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=95.88  E-value=0.061  Score=51.98  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +.+||+|||+ |.+|.+++..|...+.  +++..+....... ..+....    +..    .+..+++++||+|+++.
T Consensus         2 ~~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~----~s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         2 KGKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV----GTVEEAIPQADLIMNLL   67 (314)
T ss_pred             CcCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE----CCHHHHHhcCCEEEEeC
Confidence            3468999998 9999999999999887  6666554321111 1111111    111    13568889999999985

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.88  E-value=0.1  Score=52.57  Aligned_cols=118  Identities=20%  Similarity=0.228  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhh-------hCCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGMD  116 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a-------l~~aD  116 (358)
                      +..++.|+||+|.+|..++..|+..|.  +++++|.........++........+.. .+...+.+..       +...|
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            456899999999999999999998887  8999987542222222221110011111 1001111111       22589


Q ss_pred             EEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 018265          117 IVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (358)
Q Consensus       117 iVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  164 (358)
                      +||+++|.....   .++   -...+..|+.-...+.+.+...   .+.+.+++++.
T Consensus       287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            999999865321   112   2234566777777777766542   24467777664

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.85  E-value=0.062  Score=52.65  Aligned_cols=74  Identities=23%  Similarity=0.284  Sum_probs=44.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHH-H-HhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTA-D-ISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~-d-l~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||+|+||+|.+|..++..|...+.. +++ +++.+...+... + ..+......+.. . ..|.++.++++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence            59999999999999999999876543 666 667654223212 1 111111011111 1 1244454569999999853

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.84  E-value=0.12  Score=46.64  Aligned_cols=114  Identities=16%  Similarity=0.176  Sum_probs=63.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhh---hC--CCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA---LT--GMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a---l~--~aDiVIi  120 (358)
                      .++.|+||+|.+|++++..|+..|.  +++++|.+...  ..++..... ..+.. .+...+++++   +.  ..|+||+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~--~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAA--LAALQALGA-EALALDVADPASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhccc-eEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence            3799999999999999999988886  89999986521  112222111 01111 1111122221   22  4799999


Q ss_pred             cCCCCC--C-C--CCCH---HhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCC
Q 018265          121 PAGVPR--K-P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNP  165 (358)
Q Consensus       121 ~ag~~~--~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP  165 (358)
                      ++|...  . +  ..+.   ...+..|+.-...+.+.+..+-  ..+.+++++.-
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~  131 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR  131 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence            988642  1 1  1122   2345667666666666655432  13455555443

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.84  E-value=0.084  Score=47.79  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=31.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .+|.|+||+|.+|+.++..++..|.  +|++++++.
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4899999999999999999999887  899999865

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=95.83  E-value=0.041  Score=54.08  Aligned_cols=71  Identities=18%  Similarity=0.248  Sum_probs=46.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHH-hCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~-~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +||+|+||+|.||+.+...|. ...+ ..+++++......|....+...  ...+..   .++ .+++++.|+|++++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Ccc-cccccCCCEEEEcCC
Confidence            489999999999999999888 5554 3788898775433332222111  112222   122 246899999999876

>PRK08017 oxidoreductase; Provisional

Probab=95.81  E-value=0.19  Score=45.97  Aligned_cols=33  Identities=21%  Similarity=0.184  Sum_probs=29.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +|.|+||+|.+|.+++..|+..|.  ++++++++.
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~   36 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRRGY--RVLAACRKP   36 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            799999999999999999998887  888888764

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.81  E-value=0.45  Score=45.30  Aligned_cols=126  Identities=15%  Similarity=0.240  Sum_probs=77.9

Q ss_pred             CCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC-C---CCeEEEE----eCCCcHH
Q 018265           40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-T---NAVVRGF----LGQQQLE  109 (358)
Q Consensus        40 ~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~-~---~~~v~~~----~~t~d~~  109 (358)
                      +..+...-.|.|+||++-+|..+|+.++..+-  .++|.|++.  ....+..+.+.. .   -+++...    ......+
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk  109 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK  109 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHH
Confidence            44455666899999988999999999999886  899999997  333334344321 0   0111100    0001234


Q ss_pred             hhhCCCCEEEEcCCCCC-CCC--CCHHhH---HHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          110 DALTGMDIVIIPAGVPR-KPG--MTRDDL---FNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       110 ~al~~aDiVIi~ag~~~-~~g--~~r~~~---~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                      +...+.|++|..||+.. ++.  .++.++   +.-|    .-.++.+.+.+.+. +++.|+.++.-...
T Consensus       110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~IaS~aG~  177 (300)
T KOG1201|consen  110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIASVAGL  177 (300)
T ss_pred             HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEehhhhcc
Confidence            55689999999999643 322  222221   2223    46788889999865 47777776544433

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.80  E-value=0.053  Score=51.91  Aligned_cols=68  Identities=21%  Similarity=0.220  Sum_probs=48.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....||+|+|+ |.+|..++..|...|.  ++..+|++. ....+.++   .  ..  .. ...++.+.++++|+||.+.
T Consensus       150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~--~~-~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        150 IHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LS--PF-HLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ce--ee-cHHHHHHHhCCCCEEEECC
Confidence            34579999998 9999999999988775  999999875 22222211   1  11  11 1235678889999999985

>PRK08223 hypothetical protein; Validated

Probab=95.77  E-value=0.05  Score=51.77  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |-+|+.++..|+..|+. +|.|+|-|.
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA~aGVG-~i~lvD~D~   61 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLARLGIG-KFTIADFDV   61 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            458999998 99999999999999874 999999875

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.76  E-value=0.13  Score=49.87  Aligned_cols=94  Identities=28%  Similarity=0.306  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +...++++|+|. |.||+.+|..+.  ++.-+|+-+|+... .+..+...      .+.    .++++.++.||+|++.+
T Consensus       143 ~l~gktvGIiG~-GrIG~avA~r~~--~Fgm~v~y~~~~~~-~~~~~~~~------~~y----~~l~ell~~sDii~l~~  208 (324)
T COG1052         143 DLRGKTLGIIGL-GRIGQAVARRLK--GFGMKVLYYDRSPN-PEAEKELG------ARY----VDLDELLAESDIISLHC  208 (324)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHh--cCCCEEEEECCCCC-hHHHhhcC------cee----ccHHHHHHhCCEEEEeC
Confidence            456789999998 999999999998  55459999998653 11111111      111    23689999999999975


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ...   .++|-   .-|.       +.+++..|.+++||++
T Consensus       209 Plt---~~T~h---Lin~-------~~l~~mk~ga~lVNta  236 (324)
T COG1052         209 PLT---PETRH---LINA-------EELAKMKPGAILVNTA  236 (324)
T ss_pred             CCC---hHHhh---hcCH-------HHHHhCCCCeEEEECC
Confidence            321   11111   1121       2334445788998875

>PRK06484 short chain dehydrogenase; Validated

Probab=95.76  E-value=0.091  Score=53.84  Aligned_cols=35  Identities=29%  Similarity=0.211  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ...+.|+||++.+|..++..|+..|.  .|+++|++.
T Consensus         5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~   39 (520)
T PRK06484          5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNV   39 (520)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34789999999999999999999887  899999865

>PRK06484 short chain dehydrogenase; Validated

Probab=95.75  E-value=0.069  Score=54.71  Aligned_cols=156  Identities=17%  Similarity=0.221  Sum_probs=86.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEE-EeCCCcHHhhh-------CCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG-FLGQQQLEDAL-------TGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~a  115 (358)
                      ..++.|+||+|.+|.+++..|+..|.  .|+++|++..  .....++.. .. ..+.. ++...+.++++       ..-
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGD-EH-LSVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-ce-eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            36899999999999999999999987  8999998752  111111211 00 01111 11111222222       357


Q ss_pred             CEEEEcCCCCC--CC--CCC---HHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          116 DIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       116 DiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      |++|+.+|...  .+  ..+   -...+..|+.....+.+.+..+ ...+.|++++.-....            +.|..-
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~  412 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------ALPPRN  412 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------CCCCCc
Confidence            99999998742  11  122   2234556665555555554433 2346777776654322            233344


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .|+.+...-..+-+.++..++  +..|++..+
T Consensus       413 ~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  442 (520)
T PRK06484        413 AYCASKAAVTMLSRSLACEWA--PAGIRVNTV  442 (520)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            566655444556777777764  344554444

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.72  E-value=0.045  Score=55.01  Aligned_cols=107  Identities=19%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..+..+|+|+|+ |.+|..++..|...|. .++.++|++....  .++..... ..  .+ ...++.+++.++|+||.+.
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra--~~la~~~g-~~--~i-~~~~l~~~l~~aDvVi~aT  248 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERA--EDLAKELG-GE--AV-KFEDLEEYLAEADIVISST  248 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHH--HHHHHHcC-Ce--Ee-eHHHHHHHHhhCCEEEECC
Confidence            345579999998 9999999999988763 3899999865221  12221111 11  11 1235678899999999987


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccH
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTV  170 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t  170 (358)
                      +.+..- .        +.+    ..+...... ...+++-+++|-|+-.
T Consensus       249 ~s~~~i-i--------~~e----~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       249 GAPHPI-V--------SKE----DVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             CCCCce-E--------cHH----HHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            654311 0        111    111111111 2357888899998873

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.71  E-value=0.094  Score=48.83  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            458999998 9999999999999886 4999999875

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.69  E-value=0.086  Score=48.96  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            458999998 9999999999999886 4999999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.67  E-value=0.075  Score=53.94  Aligned_cols=91  Identities=22%  Similarity=0.205  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....+|+|+|. |.||..++..+...|.  +|..+|++.... .+..  +.     .+.    .+++++++.||+||.+.
T Consensus       252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~G-----~~~----~~leell~~ADIVI~at  317 (476)
T PTZ00075        252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--EG-----YQV----VTLEDVVETADIFVTAT  317 (476)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--cC-----cee----ccHHHHHhcCCEEEECC
Confidence            45569999998 9999999999987776  889998876322 1111  11     111    24678899999999986


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      |.+               .++.  .+.+....|.++++|++-.
T Consensus       318 Gt~---------------~iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        318 GNK---------------DIIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             Ccc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence            522               1111  1233344588999998754

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=95.67  E-value=0.056  Score=52.49  Aligned_cols=71  Identities=15%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..+++|||+ |.+|...+..+.....+.+|.++|++.  ....+.++.+.  ...+..   ..|.++++++||+|+.+.
T Consensus       128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence            458999998 999998766665544467999999986  23333444321  222333   257789999999999864

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.64  E-value=0.04  Score=55.59  Aligned_cols=124  Identities=24%  Similarity=0.312  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH---HHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +.++|.|+|+ |.+|..+|..|+..|.  +|+++|.+.....   ..++...    .++.+... ...+...++|+||.+
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~   75 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVS   75 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEEC
Confidence            4569999998 8899999999999998  9999998752111   2223221    12222111 112446789999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec--CCCCccHHHHHHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNSTVPIAAEVFKK  179 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~~t~~~~~~~~~  179 (358)
                      +|.+.... .....-..+++++.......... + ..+|-+|  |==.+.+.+++.++..
T Consensus        76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence            88743211 11111234666666555544322 2 3455554  3333444555555543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.62  E-value=0.059  Score=54.25  Aligned_cols=71  Identities=20%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhh-hCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA-LTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a-l~~aDiVIi~a  122 (358)
                      |||.|+|+ |.+|.+++..|...+.  +++++|.+...  ...+........+.+ ......++++ ++++|.||++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~--~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEER--LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            68999998 9999999999988887  89999987522  122221000011111 0011234445 78999999985

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.61  E-value=0.039  Score=53.78  Aligned_cols=71  Identities=24%  Similarity=0.444  Sum_probs=46.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++||+|+||+|.+|..++..|...++ ..+|..+-.+...+...++..    ..+...  ..+ ..+++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~--d~~-~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVE--DLT-TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEe--eCC-HHHHcCCCEEEECCC
Confidence            46999999999999999999988653 347777755443333332221    223322  112 245689999999865

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.65  Score=42.71  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcH---Hh---hhCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL---ED---ALTGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~---al~~a  115 (358)
                      +.++|.|+|++|.+|..++..|+..|.  +|+++|++.  ......++.... ...+..+. .-+|.   ++   .+...
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i   82 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI   82 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence            345899999999999999999999887  899999875  222222233211 11122111 11222   11   24579


Q ss_pred             CEEEEcCCCCCC-C--CCCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecC
Q 018265          116 DIVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       116 DiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      |++|+.+|.... +  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.+++++.
T Consensus        83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss  140 (259)
T PRK06125         83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG  140 (259)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence            999999886421 1  1111   223444554    4444555555432 356666554

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.59  E-value=0.58  Score=43.80  Aligned_cols=154  Identities=14%  Similarity=0.127  Sum_probs=82.2

Q ss_pred             CCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCcH----------Hhhh
Q 018265           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQL----------EDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~----------~~al  112 (358)
                      ...+.|+||++  .+|..++..|+..|.  .|++++++.. .....++.+... ..+-....-+|.          .+.+
T Consensus         7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (271)
T PRK06505          7 GKRGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEKKW   83 (271)
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            34789999964  799999999999987  8999987642 111222321100 001000011121          1223


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCCHH---hHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          113 TGMDIVIIPAGVPRK-----P--GMTRD---DLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~-----~--g~~r~---~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                      ..-|++|+.||....     +  ..+..   ..+..|+..    .+.+.+.+.   ..+.||+++.-....         
T Consensus        84 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~---~~G~Iv~isS~~~~~---------  151 (271)
T PRK06505         84 GKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMP---DGGSMLTLTYGGSTR---------  151 (271)
T ss_pred             CCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhc---cCceEEEEcCCCccc---------
Confidence            568999999986431     1  12221   223445443    344444443   246677766533211         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                         +.|..-.++.+.-.-..|-+.+|..++  +..|++..+
T Consensus       152 ---~~~~~~~Y~asKaAl~~l~r~la~el~--~~gIrVn~v  187 (271)
T PRK06505        152 ---VMPNYNVMGVAKAALEASVRYLAADYG--PQGIRVNAI  187 (271)
T ss_pred             ---cCCccchhhhhHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence               233333566665555567788888874  455554443

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.56  E-value=0.062  Score=49.34  Aligned_cols=36  Identities=33%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..||+|+|+ |.+|+.++..|+..|+ .++.|+|.+.
T Consensus        20 ~~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            3458999998 9999999999999886 4999999764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.56  E-value=0.077  Score=52.32  Aligned_cols=72  Identities=21%  Similarity=0.195  Sum_probs=44.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC-CC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~-~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++||+|+||+|.+|..+...++.. .+ ..+++++......+....+..    ....... ..|. +.++++|+|+++++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g----~~~~v~~-~~~~-~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGG----KEGTLQD-AFDI-DALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCC----CcceEEe-cCCh-hHhcCCCEEEECCC
Confidence            369999999999999999755554 44 456888765432222222221    1112221 1232 55799999999875

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.55  E-value=0.12  Score=46.41  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            458999998 8899999999999987 4899999774

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.55  E-value=0.079  Score=51.51  Aligned_cols=73  Identities=16%  Similarity=0.238  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ..+|+|+|+ |..|...+..+.....+.++.++|++.  .+..+.++.+.. ...+..   ..|+++++.+||+||.+..
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT~  206 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTTP  206 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEeeC
Confidence            459999998 999998877776533356999999876  233334443221 122322   3578899999999988743

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=95.54  E-value=0.14  Score=49.44  Aligned_cols=66  Identities=17%  Similarity=0.184  Sum_probs=44.9

Q ss_pred             CEEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe
Q 018265           47 FKVAVLGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL  103 (358)
Q Consensus        47 ~KI~IiGa~G~--------------------vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~  103 (358)
                      |||+|-|| |+                    -|+.+|..|+..|+  +|+++|++..   ......+.+...    ..  
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~--   71 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV--   71 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee--
Confidence            68888887 64                    26777888888888  9999998752   122233443221    11  


Q ss_pred             CCCcHHhhhCCCCEEEEcC
Q 018265          104 GQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus       104 ~t~d~~~al~~aDiVIi~a  122 (358)
                       .++..++.++||+||++-
T Consensus        72 -AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        72 -VSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             -cCCHHHHHhCCCEEEEec
Confidence             235679999999999984

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.53  E-value=0.072  Score=56.06  Aligned_cols=138  Identities=14%  Similarity=0.193  Sum_probs=82.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcH----HhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL----EDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~al~~aDiVIi~  121 (358)
                      ..+|.|+|. |.+|+.++..|...+.  +++.+|.|+.  .+..+.+.. .+-+.+  ..++.    +.-+++||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~--~v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDIS--AVNLMRKYG-YKVYYG--DATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHH--HHHHHHhCC-CeEEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence            468999998 9999999999998887  8999998862  122233221 122222  11232    1235789999998


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~  200 (358)
                      .+.+           ..|.    .++..++++.|+..++.- .||.+.-      .+++. |  .+.++-=+...+.++-
T Consensus       472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~~~------~L~~~-G--a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVEAH------ELLQA-G--VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHHHH------HHHhC-C--CCEEEccHHHHHHHHH
Confidence            4321           3343    355667788898776654 4665332      23443 3  2444433433344555


Q ss_pred             HHHHHHhCCCCCCCc
Q 018265          201 TFVAEVLGLDPREVD  215 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~  215 (358)
                      ...=..+|++++++.
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            555567788776663

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.53  E-value=0.055  Score=53.49  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             cCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCC
Q 018265           38 CRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMD  116 (358)
Q Consensus        38 ~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aD  116 (358)
                      ....++.++.||+|+|+ |.+|...+..+...|.  ++..+|++....  ..+.... ...+.. .....++.+.++++|
T Consensus       159 ~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aD  232 (370)
T TIGR00518       159 LGGVPGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRAD  232 (370)
T ss_pred             ecCCCCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCC
Confidence            44555667779999998 9999999999988886  799999875221  1121110 111111 111235677889999


Q ss_pred             EEEEcCCCC
Q 018265          117 IVIIPAGVP  125 (358)
Q Consensus       117 iVIi~ag~~  125 (358)
                      +||.+.+.+
T Consensus       233 vVI~a~~~~  241 (370)
T TIGR00518       233 LLIGAVLIP  241 (370)
T ss_pred             EEEEccccC
Confidence            999987654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.50  E-value=0.06  Score=52.08  Aligned_cols=73  Identities=27%  Similarity=0.350  Sum_probs=47.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHH-HHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++||+|+||+|.||+.+...|.... .+.++.++=..+..|.. .++..-..  .+..  ...|. .+++++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~~-~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAADE-FVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--ccccc-cccccCCEEEEeCc
Confidence            3699999999999999999999854 46667777665433332 33332110  0110  01232 45779999999886

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.48  E-value=0.85  Score=42.26  Aligned_cols=159  Identities=13%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             CCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcC-CCCCeEEE-EeCCCcHH-------hhh
Q 018265           45 PGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTNAVVRG-FLGQQQLE-------DAL  112 (358)
Q Consensus        45 ~~~KI~IiGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~-~~~~~v~~-~~~t~d~~-------~al  112 (358)
                      +...+.|+||++  .+|..++..|+..|.  .|++.+.+. ......++... .....+.. ++...+.+       +.+
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW   84 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence            344789999965  599999999998887  788888754 12223333221 11000110 11111111       223


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCCH---HhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 TGMDIVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      ...|++|..+|....     +  ..+.   ...+..|+.....+++.+...- ..+.|++++......            
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------  152 (260)
T PRK06603         85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------  152 (260)
T ss_pred             CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------
Confidence            568999998886421     1  1121   2234455544444444332221 346777777543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.|..-.|+.+.-.-..|.+.+|..++  +..|++..+
T Consensus       153 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v  188 (260)
T PRK06603        153 VIPNYNVMGVAKAALEASVKYLANDMG--ENNIRVNAI  188 (260)
T ss_pred             CCCcccchhhHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            233334566665555667788888774  445554443

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.48  E-value=0.07  Score=51.75  Aligned_cols=73  Identities=12%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ..+|+|||+ |.+|...+..+....-+.+|.++|++.  ....+.++.+. ....+..+   .|+++++++||+||++..
T Consensus       127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT~  201 (325)
T PRK08618        127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVTN  201 (325)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEccC
Confidence            348999998 999988776665443457999999876  22333334321 11233332   567899999999998743

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.47  E-value=0.047  Score=53.99  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~   75 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT   75 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            458999998 9999999999999886 4999999874

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.46  E-value=0.039  Score=53.84  Aligned_cols=72  Identities=21%  Similarity=0.382  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +++||+|+||+|.+|.-+...|...+. ..+|.++-..+..|..+.+..    ..+...  ..+. ++++++|+|+++.+
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~--~~~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR--EVDS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe--eCCh-HHhcCCCEEEEcCC
Confidence            347999999999999999999986542 447777755443333332221    122221  1222 34789999999753

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.45  E-value=0.66  Score=43.58  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=80.2

Q ss_pred             CCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCcHH----------hhh
Q 018265           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLE----------DAL  112 (358)
Q Consensus        46 ~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~----------~al  112 (358)
                      ...+.|+||+  +.+|..++..|+..|.  .|++.|++.. .....++.+.......-.. .-+|.+          +.+
T Consensus         5 ~k~~lItGas~~~GIG~aiA~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~-Dv~d~~~v~~~~~~i~~~~   81 (274)
T PRK08415          5 GKKGLIVGVANNKSIAYGIAKACFEQGA--ELAFTYLNEALKKRVEPIAQELGSDYVYEL-DVSKPEHFKSLAESLKKDL   81 (274)
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCceEEEe-cCCCHHHHHHHHHHHHHHc
Confidence            3588999985  5799999999999987  8899988741 1112222111000111001 112221          123


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCCH---HhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          113 TGMDIVIIPAGVPRK-----P--GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                      ...|++|..||....     +  ..+.   ...+.-|+..    .+.+.+.+.+   ++.|+++|.-....         
T Consensus        82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~---~g~Iv~isS~~~~~---------  149 (274)
T PRK08415         82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND---GASVLTLSYLGGVK---------  149 (274)
T ss_pred             CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc---CCcEEEEecCCCcc---------
Confidence            467999999996421     1  1222   2234556444    4444444432   46667665322111         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                         ..|..-.|+.+.-.-..|-+.+|..++  +..|++..+
T Consensus       150 ---~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v  185 (274)
T PRK08415        150 ---YVPHYNVMGVAKAALESSVRYLAVDLG--KKGIRVNAI  185 (274)
T ss_pred             ---CCCcchhhhhHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence               122223455554444556777777763  445544433

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.42  E-value=0.054  Score=52.31  Aligned_cols=70  Identities=17%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .+++|+|+ |..+..-+..+...-.+.+|.++|++.  .+..+.++.+ . ...+...   .|.++|+++||+|+.+.
T Consensus       129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred             ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence            38999998 999888877665532378999999986  4455566666 2 3445443   57899999999988753

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=95.41  E-value=0.25  Score=45.53  Aligned_cols=156  Identities=16%  Similarity=0.056  Sum_probs=79.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHh----CCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcH---HhhhC----
Q 018265           48 KVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL---EDALT----  113 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~----~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al~----  113 (358)
                      .+.|+||++.+|..++..|+.    .|.  .|++.+++.  ......++........+..+. .-+|.   ++.++    
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~   79 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGS--VLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRE   79 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCc--EEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHh
Confidence            478999999999999999986    455  889998875  233333444311111222211 11222   12221    


Q ss_pred             -------CCCEEEEcCCCCCCC----C-CC----HHhHHHHHHHH----HHHHHHHHHhh-CCCeEEEEecCCCCccHHH
Q 018265          114 -------GMDIVIIPAGVPRKP----G-MT----RDDLFNINAGI----VKTLCEGIAKC-CPKAIVNLISNPVNSTVPI  172 (358)
Q Consensus       114 -------~aDiVIi~ag~~~~~----g-~~----r~~~~~~N~~i----~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~  172 (358)
                             +-|++|+.+|.....    . ..    -...+..|+.-    .+.+.+.+.+. ...+.|++++......   
T Consensus        80 ~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~---  156 (256)
T TIGR01500        80 LPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ---  156 (256)
T ss_pred             ccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC---
Confidence                   125788888863211    1 11    12344555443    45555555543 2235667665533211   


Q ss_pred             HHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          173 AAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       173 ~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                               ++|..-.++.+......+.+.++..+.  +..|++..+
T Consensus       157 ---------~~~~~~~Y~asKaal~~l~~~la~e~~--~~~i~v~~v  192 (256)
T TIGR01500       157 ---------PFKGWALYCAGKAARDMLFQVLALEEK--NPNVRVLNY  192 (256)
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhc--CCCeEEEEe
Confidence                     222222344444334456667776664  455655544

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.38  E-value=0.24  Score=44.70  Aligned_cols=72  Identities=11%  Similarity=0.070  Sum_probs=46.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+..||.|||+ |.+|...+..|...|.  +|++++.+... ...++.+..   .+......-+ ++.+.++|+||.+.+
T Consensus         8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~   79 (202)
T PRK06718          8 LSNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN   79 (202)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence            34569999999 9999999999988885  89999754322 223333221   1222111112 356899999888754

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.18  Score=47.32  Aligned_cols=112  Identities=18%  Similarity=0.189  Sum_probs=60.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh------CCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------TGM  115 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------~~a  115 (358)
                      .+.|+|| |.+|.+++..|. .|.  +|++.|++..  .....++....  ..+..+. .-+|   .+.++      ...
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4566776 899999999986 565  8999998752  22222333211  1222111 1112   22222      358


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCC
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV  166 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~  166 (358)
                      |++|+.+|.... ..+-...+..|+.....+++.+... .+++.+++++...
T Consensus        78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence            999999987521 2233445666766655555555443 1234445554433

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.37  E-value=0.066  Score=47.00  Aligned_cols=57  Identities=30%  Similarity=0.494  Sum_probs=44.6

Q ss_pred             CCCCCEEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           43 GSPGFKVAVLGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~-vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +.+..||+|+|+ |. +|..++..|...+.  ++.+++.+.                       .++.+.+++||+||.+
T Consensus        41 ~l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsa   94 (168)
T cd01080          41 DLAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVA   94 (168)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEc
Confidence            345669999999 86 58889999988876  788887531                       2456789999999998


Q ss_pred             CCCC
Q 018265          122 AGVP  125 (358)
Q Consensus       122 ag~~  125 (358)
                      .+.|
T Consensus        95 t~~~   98 (168)
T cd01080          95 VGKP   98 (168)
T ss_pred             CCCC
Confidence            7765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.33  E-value=0.36  Score=44.71  Aligned_cols=160  Identities=13%  Similarity=0.110  Sum_probs=80.2

Q ss_pred             CCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcC-CCCCeEEE-EeCCCcHH-------hhh
Q 018265           45 PGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVRG-FLGQQQLE-------DAL  112 (358)
Q Consensus        45 ~~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~-~~~~~v~~-~~~t~d~~-------~al  112 (358)
                      +...+.|+||+  +.+|..++..|+..|.  .|++.|++.. .....++... .....+.. .+...+.+       +.+
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~--~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   86 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEW   86 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHc
Confidence            34578999986  3799999999999887  8999998752 1111222111 10000110 00011111       123


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      ..-|++|..+|....     +  ..+   -.+.+..|+.-...+++.+..+- ..+.+++++......            
T Consensus        87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~------------  154 (258)
T PRK07533         87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK------------  154 (258)
T ss_pred             CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc------------
Confidence            457999999986431     0  112   12334555544444444333221 235666655332111            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..|..-.++.+.-.-..+-+.++..++  +..|++..+-
T Consensus       155 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~Vn~v~  191 (258)
T PRK07533        155 VVENYNLMGPVKAALESSVRYLAAELG--PKGIRVHAIS  191 (258)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence            122223455554444556677777764  4455554443

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.30  E-value=0.08  Score=50.89  Aligned_cols=72  Identities=11%  Similarity=0.111  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ...+|+|+|+ |.+|...+..+.......++.++|++.  +...+.++...  ...+.    ..+.++++.+||+||.+.
T Consensus       124 ~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVitaT  196 (304)
T PRK07340        124 PPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTAT  196 (304)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEcc
Confidence            3459999998 999999998886533346899999976  33334444321  12222    246788999999999875


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      .
T Consensus       197 ~  197 (304)
T PRK07340        197 T  197 (304)
T ss_pred             C
Confidence            4

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.30  E-value=1.4  Score=40.77  Aligned_cols=158  Identities=15%  Similarity=0.171  Sum_probs=81.2

Q ss_pred             CCCEEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCe-EEE-EeCCCcHHh-------hh
Q 018265           45 PGFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAV-VRG-FLGQQQLED-------AL  112 (358)
Q Consensus        45 ~~~KI~IiGa--~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~-v~~-~~~t~d~~~-------al  112 (358)
                      +.+.+.|+||  ++.+|..++..|+..|.  .|++.+++. ......++........ +.. .+...+.++       .+
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA--ELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW   82 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh
Confidence            4457999996  46899999999999887  888876543 1222223321100000 110 001112221       23


Q ss_pred             CCCCEEEEcCCCCCC-----C---CCCHHh---HHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHH
Q 018265          113 TGMDIVIIPAGVPRK-----P---GMTRDD---LFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~-----~---g~~r~~---~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                      ...|++|+.+|....     +   ..+..+   .+..|+...    +.+.+.+++.  .+.|+++|......        
T Consensus        83 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~--~g~Iv~iss~~~~~--------  152 (261)
T PRK08690         83 DGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR--NSAIVALSYLGAVR--------  152 (261)
T ss_pred             CCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc--CcEEEEEccccccc--------
Confidence            468999999987432     1   112221   123454333    3334444322  35677776543221        


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                          +.|..-.++.+.-.-..+.+.+|..++  +..|++..+-
T Consensus       153 ----~~~~~~~Y~asKaal~~l~~~la~e~~--~~gIrVn~i~  189 (261)
T PRK08690        153 ----AIPNYNVMGMAKASLEAGIRFTAACLG--KEGIRCNGIS  189 (261)
T ss_pred             ----CCCCcccchhHHHHHHHHHHHHHHHhh--hcCeEEEEEe
Confidence                233334566655444456677777663  4556555443

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.29  E-value=0.044  Score=51.34  Aligned_cols=68  Identities=26%  Similarity=0.257  Sum_probs=43.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +|||+|+|++|.+|+.++..+...+-..-+.++|.+.......    ..  ..+.   .++|+++.++++|+||...
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----~~--~~i~---~~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----GA--LGVA---ITDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----CC--CCcc---ccCCHHHhccCCCEEEECC
Confidence            4799999987999999998877654332344577765211111    11  1121   2367888888999999664

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.29  E-value=0.089  Score=45.76  Aligned_cols=66  Identities=15%  Similarity=0.171  Sum_probs=42.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +..+|+|||- |.-|.+.+..|...|+  +++.-..........--.+. +    +    ..+.+||.+.||+|+++.
T Consensus         3 ~~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~G-f----~----v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    3 KGKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADG-F----E----VMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             CTSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT------E----CCEHHHHHHC-SEEEE-S
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCC-C----e----eccHHHHHhhCCEEEEeC
Confidence            4569999998 9999999999999998  77666654432222212222 1    1    135689999999999983

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.28  E-value=0.045  Score=53.55  Aligned_cols=71  Identities=24%  Similarity=0.408  Sum_probs=45.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++||+|+||+|.+|..+...|...++ ..+|.++......|...+..    ...+...  ..+ .+++.++|+||++.+
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~----~~~~~v~--~~~-~~~~~~~D~vf~a~p   78 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFE----GRDYTVE--ELT-EDSFDGVDIALFSAG   78 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeec----CceeEEE--eCC-HHHHcCCCEEEECCC
Confidence            36999999999999999988887543 45777775544223322221    1122221  123 356799999999865

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.27  E-value=0.087  Score=53.02  Aligned_cols=107  Identities=20%  Similarity=0.272  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+..+|+|+|+ |.+|..++..+...|. .+++++|++....  .++..... ..+..   ..++.+++.++|+||.+.+
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra--~~la~~~g-~~~~~---~~~~~~~l~~aDvVI~aT~  251 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERA--EELAEEFG-GEAIP---LDELPEALAEADIVISSTG  251 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHH--HHHHHHcC-CcEee---HHHHHHHhccCCEEEECCC
Confidence            45579999998 9999999998887664 4789999865221  12221110 11111   1456778899999999876


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHH-hhCCCeEEEEecCCCCccH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIA-KCCPKAIVNLISNPVNSTV  170 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~-~~~p~a~viv~tNP~d~~t  170 (358)
                      .+... .        +...++..   +. +.....+++-.++|-|+-.
T Consensus       252 s~~~~-i--------~~~~l~~~---~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        252 APHPI-I--------GKGMVERA---LKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             CCCcE-E--------cHHHHHHH---HhhccCCCeEEEEeCCCCCCcc
Confidence            54211 0        11111111   11 1124567888899998873

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.25  E-value=0.45  Score=44.56  Aligned_cols=160  Identities=13%  Similarity=0.125  Sum_probs=83.6

Q ss_pred             CCCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcC-CCCCeEEE-EeCCCcHH-------hh
Q 018265           44 SPGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTNAVVRG-FLGQQQLE-------DA  111 (358)
Q Consensus        44 ~~~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~-~~~~~v~~-~~~t~d~~-------~a  111 (358)
                      ++...+.|+||+  +.+|..++..|+..|.  .|++.+++. ......++... .....+.. .+...+.+       +.
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~--~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGA--ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence            344589999985  5799999999999987  888887643 11222222211 10000110 00011111       22


Q ss_pred             hCCCCEEEEcCCCCCC-----C--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 LTGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      +..-|++|+.||....     +  ..+   -...+..|+.-...+++.+..+- ..+.+++++.....            
T Consensus        86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~------------  153 (272)
T PRK08159         86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE------------  153 (272)
T ss_pred             cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc------------
Confidence            3457999999986431     1  122   22334556544444444433321 24667766643211            


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .+.|....++.+.-....+-+.++..+.  +..|++..+
T Consensus       154 ~~~p~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v  190 (272)
T PRK08159        154 KVMPHYNVMGVAKAALEASVKYLAVDLG--PKNIRVNAI  190 (272)
T ss_pred             cCCCcchhhhhHHHHHHHHHHHHHHHhc--ccCeEEEEe
Confidence            1233334566665555567777777764  455655444

>PRK08303 short chain dehydrogenase; Provisional

Probab=95.24  E-value=0.51  Score=45.16  Aligned_cols=160  Identities=14%  Similarity=0.130  Sum_probs=84.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------------chhHHHHHhcCCCCCeEEEE----eCCCcH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------------TPGVTADISHMDTNAVVRGF----LGQQQL  108 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~------------~~g~~~dl~~~~~~~~v~~~----~~t~d~  108 (358)
                      +.+.+.|+||++.+|..++..|+..|.  .|++++++.            .......+....  ..+..+    +...+.
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v   82 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA--TVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQV   82 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHH
Confidence            445899999999999999999999887  899998763            111122232211  111111    011122


Q ss_pred             Hh-------hhCCCCEEEEcC-CCCC-----CC--CCCH---HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          109 ED-------ALTGMDIVIIPA-GVPR-----KP--GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       109 ~~-------al~~aDiVIi~a-g~~~-----~~--g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      +.       .+...|++|+.+ |...     .+  ..+.   .+.+..|    +-..+.+.+.+.+. ..+.||++|...
T Consensus        83 ~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~-~~g~IV~isS~~  161 (305)
T PRK08303         83 RALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRR-PGGLVVEITDGT  161 (305)
T ss_pred             HHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhC-CCcEEEEECCcc
Confidence            21       224679999988 7421     11  1111   1223333    34455566666443 346777776533


Q ss_pred             CccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       167 d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ...         ...+.+..-.|+.+......|.+.+|..++  +..|++..+-
T Consensus       162 ~~~---------~~~~~~~~~~Y~asKaal~~lt~~La~el~--~~gIrVn~v~  204 (305)
T PRK08303        162 AEY---------NATHYRLSVFYDLAKTSVNRLAFSLAHELA--PHGATAVALT  204 (305)
T ss_pred             ccc---------cCcCCCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEec
Confidence            211         000111122455655555567777888774  4556554443

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.24  E-value=0.087  Score=50.59  Aligned_cols=72  Identities=14%  Similarity=0.063  Sum_probs=51.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..+++|||+ |..|..-+..+..-..+.+|.++|++.  ....+.++.+. ....+...   .+.++++++||+|+.+.
T Consensus       117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-~~~~v~~~---~~~~eav~~aDIV~taT  190 (301)
T PRK06407        117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-FGVDIRPV---DNAEAALRDADTITSIT  190 (301)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEec
Confidence            348999998 999888877776654578999999986  33444455432 12234443   46789999999999754

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.24  E-value=0.075  Score=55.00  Aligned_cols=66  Identities=23%  Similarity=0.317  Sum_probs=47.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....+|+|+|. |.+|+.+|..+..-|.  ++..||.........++   .    +..   ..++++.+++||+|++..
T Consensus       136 l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV~l~l  201 (525)
T TIGR01327       136 LYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL---G----VEL---VDDLDELLARADFITVHT  201 (525)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE---cCCHHHHHhhCCEEEEcc
Confidence            34468999998 9999999999987776  99999974322122211   1    111   135789999999999974

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.24  E-value=0.072  Score=50.62  Aligned_cols=60  Identities=18%  Similarity=0.308  Sum_probs=43.6

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        51 IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||. |.+|..++..|+..+.  +|.++|++...  ..++....    ...   +.++.+++++||+||++.
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML   60 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            5798 9999999999999887  89999987521  22233211    111   245678899999999985

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.23  E-value=1.2  Score=41.34  Aligned_cols=158  Identities=13%  Similarity=0.106  Sum_probs=80.7

Q ss_pred             CCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEE----eCCCcHH-------hh
Q 018265           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGF----LGQQQLE-------DA  111 (358)
Q Consensus        46 ~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~----~~t~d~~-------~a  111 (358)
                      ...++|+||+  +.+|..++..|++.|.  .+++.+++. ......++.+......+..+    +...+.+       +.
T Consensus         7 ~k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          7 GKTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            3478999985  6899999999999987  888887643 11111122111000111111    0011111       22


Q ss_pred             hCCCCEEEEcCCCCCC-----C--CCCHHh---HHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 LTGMDIVIIPAGVPRK-----P--GMTRDD---LFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~-----~--g~~r~~---~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      +...|++|+.+|....     +  ..+..+   .+..|......+.+.+..+ .+.+.|++++.-....           
T Consensus        85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~-----------  153 (257)
T PRK08594         85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER-----------  153 (257)
T ss_pred             CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc-----------
Confidence            3457999999886421     1  122222   2334444333333333222 1347777776543221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.|..-.|+.+...-..|-+.+|..+.  +..|++..+
T Consensus       154 -~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrvn~v  189 (257)
T PRK08594        154 -VVQNYNVMGVAKASLEASVKYLANDLG--KDGIRVNAI  189 (257)
T ss_pred             -CCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCEEeee
Confidence             122223456665555567777887774  345554444

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.18  E-value=0.11  Score=50.16  Aligned_cols=71  Identities=15%  Similarity=0.214  Sum_probs=47.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..+|+|||+ |.+|...+..+.......+|.++|++.  ....+.++.+.  ...+...   .+.++++++||+|+.+.
T Consensus       125 ~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        125 ASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCAT  197 (314)
T ss_pred             CceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEee
Confidence            459999998 999999987665532245999999876  33334444332  1123332   46778999999996654

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.13  E-value=0.22  Score=44.76  Aligned_cols=36  Identities=17%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..||+|+|+ |.+|+.++..|+..|+ ..|+++|.+.
T Consensus        20 ~~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            3458999998 8899999999999986 5899999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.09  E-value=0.25  Score=44.68  Aligned_cols=71  Identities=18%  Similarity=0.122  Sum_probs=47.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      ..||+|+|+ |.+|..-+..|+..|-  .|++++.+.. ....++....   .+.......+ .+.+.++|+||.+.+.
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~d   79 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATDD   79 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence            459999999 9999999999998886  8999987542 2222333221   2333222223 3568999999988543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.08  E-value=0.075  Score=52.77  Aligned_cols=76  Identities=14%  Similarity=0.186  Sum_probs=45.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-CCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .++||+|+||+|.+|..+...|...+.. +|.++..+...|....-.+.. .......+. ..+ .+.++++|+||++.+
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Alp  113 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCLP  113 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcCC
Confidence            4569999999999999999998887533 888887654223221111100 001111110 112 234799999999753

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.05  E-value=0.14  Score=49.16  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=61.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ....+|+|+|- |.||+.++..+..-|.  ++..+|.....       +.     ....  ..++++.++.||+|++...
T Consensus       120 L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~~-----~~~~--~~~l~ell~~aDiv~~~lp  182 (303)
T PRK06436        120 LYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------DG-----ISSI--YMEPEDIMKKSDFVLISLP  182 (303)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------cC-----cccc--cCCHHHHHhhCCEEEECCC
Confidence            34569999998 9999999987766576  99999975311       00     0000  1357899999999999753


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec--CCCCccH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNSTV  170 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~~t  170 (358)
                      ..  + +++        .++.  .+.+....|.+++||++  .++|.-+
T Consensus       183 ~t--~-~T~--------~li~--~~~l~~mk~ga~lIN~sRG~~vd~~a  218 (303)
T PRK06436        183 LT--D-ETR--------GMIN--SKMLSLFRKGLAIINVARADVVDKND  218 (303)
T ss_pred             CC--c-hhh--------cCcC--HHHHhcCCCCeEEEECCCccccCHHH
Confidence            21  1 111        1111  22333334789999986  6666543

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.03  E-value=0.05  Score=52.43  Aligned_cols=70  Identities=14%  Similarity=0.215  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCC-CchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~-~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..++|+| ||+|.||..+...|.++++ .+++.|++.. ...|....+.    ...+....-  + ++++++.|++++ +
T Consensus         2 ~~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~----g~~~~V~~l--~-~~~f~~vDia~f-a   72 (322)
T PRK06901          2 ATLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFN----NKAVEQIAP--E-EVEWADFNYVFF-A   72 (322)
T ss_pred             CcceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEEC----CEEEEEEEC--C-ccCcccCCEEEE-c
Confidence            4579999 9999999999999988875 6789999876 3333222121    123333221  2 356899999999 6


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      |
T Consensus        73 g   73 (322)
T PRK06901         73 G   73 (322)
T ss_pred             C
Confidence            5

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.02  E-value=0.095  Score=54.27  Aligned_cols=66  Identities=23%  Similarity=0.302  Sum_probs=47.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ...++|+|+|. |.+|+.++..+..-|.  +|+.||.........++       .+..    .++++.++.||+|++...
T Consensus       138 l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~ell~~aDiV~l~lP  203 (526)
T PRK13581        138 LYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVEL----VSLDELLARADFITLHTP  203 (526)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE----EcHHHHHhhCCEEEEccC
Confidence            34568999998 9999999999987776  99999975322111111       1121    147889999999999753

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.02  E-value=0.053  Score=53.03  Aligned_cols=71  Identities=25%  Similarity=0.503  Sum_probs=47.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~-~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+||+|+||+|.+|..+...|...+ + ..+|.++......|....+..    ..+...  ..|. +.++++|+|+++++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~--~~~~-~~~~~~Divf~a~~   77 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQ--EAKI-NSFEGVDIAFFSAG   77 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEE--eCCH-HHhcCCCEEEECCC
Confidence            4699999999999999999998544 3 346888876553343332221    123332  1243 55789999999764

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.02  E-value=0.71  Score=43.53  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~   81 (358)
                      ...+.|+||++.+|..++..|+..|.  .++++|.+
T Consensus         6 ~k~~lITGas~GIG~aia~~la~~G~--~vii~~~~   39 (286)
T PRK07791          6 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG   39 (286)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEeeCC
Confidence            45899999999999999999999887  88888865

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.00  E-value=0.12  Score=50.27  Aligned_cols=80  Identities=23%  Similarity=0.294  Sum_probs=52.8

Q ss_pred             ccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcH
Q 018265           29 ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL  108 (358)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~  108 (358)
                      ..+.|.+..-+. .....++|+|||. |.||+.++..+..-|.  +|..||.........  .+.     +.   .-.++
T Consensus       126 ~~g~W~~~~~~g-~el~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~~-----~~---~~~~L  191 (324)
T COG0111         126 RRGEWDRKAFRG-TELAGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VDG-----VV---GVDSL  191 (324)
T ss_pred             HcCCcccccccc-ccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--ccc-----ce---ecccH
Confidence            445677622211 1233569999998 9999999999988887  999999843111111  111     11   12457


Q ss_pred             HhhhCCCCEEEEcC
Q 018265          109 EDALTGMDIVIIPA  122 (358)
Q Consensus       109 ~~al~~aDiVIi~a  122 (358)
                      ++-++.||||++..
T Consensus       192 d~lL~~sDiv~lh~  205 (324)
T COG0111         192 DELLAEADILTLHL  205 (324)
T ss_pred             HHHHhhCCEEEEcC
Confidence            89999999999964

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.93  E-value=0.61  Score=45.46  Aligned_cols=126  Identities=19%  Similarity=0.246  Sum_probs=73.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC-CCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTG-MDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~-aDiVIi~ag  123 (358)
                      ..+|+|+|+ |-+|.......+..+.  +++.+|+++ ....+.+|.   ...-+.. . ..|.-+++++ +|+||.+++
T Consensus       167 G~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lG---Ad~~i~~-~-~~~~~~~~~~~~d~ii~tv~  238 (339)
T COG1064         167 GKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLG---ADHVINS-S-DSDALEAVKEIADAIIDTVG  238 (339)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhC---CcEEEEc-C-CchhhHHhHhhCcEEEECCC
Confidence            469999999 8888887777776674  999999986 333445442   1111211 1 2233344444 999999975


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC-Cc-cH-HHHHHHHHHhCCCCCCcEEEee---eccHH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-NS-TV-PIAAEVFKKVGTYDPKRLLGVT---MLDVV  197 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-d~-~t-~~~~~~~~~~~~~p~~kviG~t---~lds~  197 (358)
                       +               .-+.+..+.+   .+.+.++.+.+|- .. .. .+.    .-  -+...+|.|..   .-|+.
T Consensus       239 -~---------------~~~~~~l~~l---~~~G~~v~vG~~~~~~~~~~~~~----~l--i~~~~~i~GS~~g~~~d~~  293 (339)
T COG1064         239 -P---------------ATLEPSLKAL---RRGGTLVLVGLPGGGPIPLLPAF----LL--ILKEISIVGSLVGTRADLE  293 (339)
T ss_pred             -h---------------hhHHHHHHHH---hcCCEEEEECCCCCcccCCCCHH----Hh--hhcCeEEEEEecCCHHHHH
Confidence             3               1223333334   4788999999994 33 21 111    11  13456888883   34554


Q ss_pred             HHHHHHH
Q 018265          198 RANTFVA  204 (358)
Q Consensus       198 R~~~~lA  204 (358)
                      .+..+.+
T Consensus       294 e~l~f~~  300 (339)
T COG1064         294 EALDFAA  300 (339)
T ss_pred             HHHHHHH
Confidence            4444443

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=94.90  E-value=0.39  Score=46.47  Aligned_cols=100  Identities=20%  Similarity=0.353  Sum_probs=58.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhC----CC-CcEEEEEeCCC-chh---HHHHHhcCC-----C------CCeEEEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKIN----PL-VSVLHLYDVVN-TPG---VTADISHMD-----T------NAVVRGF  102 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~----~~-~~el~L~D~~~-~~g---~~~dl~~~~-----~------~~~v~~~  102 (358)
                      .+.+.||+|||+ |+=|++++..+...    +. ..+|...-..+ ..+   ...|.-...     +      ++.+.  
T Consensus        18 ~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~Nvv--   94 (372)
T KOG2711|consen   18 ERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVV--   94 (372)
T ss_pred             hcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeE--
Confidence            344579999998 99999999877653    11 12333332222 222   222221111     1      12333  


Q ss_pred             eCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 018265          103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI  162 (358)
Q Consensus       103 ~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~  162 (358)
                       ..+|+.+|++|||++|+..  |              -..+.+++++|..+- |++..|-.
T Consensus        95 -Av~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL  138 (372)
T KOG2711|consen   95 -AVPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISL  138 (372)
T ss_pred             -ecchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEe
Confidence             3579999999999999973  3              244566777777665 55554443

>PRK07877 hypothetical protein; Provisional

Probab=94.89  E-value=0.13  Score=55.00  Aligned_cols=75  Identities=23%  Similarity=0.406  Sum_probs=50.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----c-------------hhH--HHHHhcCCCCCeEEEEeC-
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T-------------PGV--TADISHMDTNAVVRGFLG-  104 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----~-------------~g~--~~dl~~~~~~~~v~~~~~-  104 (358)
                      ..||+|+|+ | +|++++..|+..|++.+|.|+|-|.     +             +..  +..+.....+..+..+.. 
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~  184 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG  184 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            469999999 9 9999999999999877999999875     1             011  112222222334444321 


Q ss_pred             --CCcHHhhhCCCCEEEEcC
Q 018265          105 --QQQLEDALTGMDIVIIPA  122 (358)
Q Consensus       105 --t~d~~~al~~aDiVIi~a  122 (358)
                        ..+..+-++++|+||-+.
T Consensus       185 i~~~n~~~~l~~~DlVvD~~  204 (722)
T PRK07877        185 LTEDNVDAFLDGLDVVVEEC  204 (722)
T ss_pred             CCHHHHHHHhcCCCEEEECC
Confidence              235666678999999874

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=94.88  E-value=0.15  Score=49.40  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ..+++|||+ |..|...+..+.....+.+|.+++++.  ....+.++.+.. ...+..   ..++++++.+||+||.+..
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT~  203 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTTP  203 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEecC
Confidence            358999998 999988888886433356899999876  333344443211 122322   3578899999999998743

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=94.87  E-value=0.16  Score=46.99  Aligned_cols=112  Identities=15%  Similarity=0.129  Sum_probs=58.7

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhH--H-HHHhcCC--------CCCeEEEEeCC----------Cc
Q 018265           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV--T-ADISHMD--------TNAVVRGFLGQ----------QQ  107 (358)
Q Consensus        51 IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~--~-~dl~~~~--------~~~~v~~~~~t----------~d  107 (358)
                      |+||+||+|+++...|+..+...+|+++-+...  .+.  . ..+.+..        ...+++.+.+.          .+
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            689999999999998887764227777765441  111  1 0111110        02345544321          23


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +.+..+.+|+||++|+.-. ......++...|+...+++++...+.... .++.+|.
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iST  135 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYIST  135 (249)
T ss_dssp             HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEEE
T ss_pred             hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCc-ceEEecc
Confidence            4444489999999987432 12234446788999999999999854433 5555544

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.85  E-value=0.07  Score=51.71  Aligned_cols=73  Identities=25%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC--CCCCeEEEEeCCCcHHh-hhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLED-ALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~--~~~~~v~~~~~t~d~~~-al~~aDiVIi~  121 (358)
                      ++||+|+||+|..|..+...|...+.. |+.++...+..|....-.+.  .....++..  ..|.++ ...+||+||++
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence            579999999999999999999888644 78888776534433322211  111122221  123333 24569999997

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.81  E-value=0.064  Score=52.31  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +.+||+|+||+|.+|..+...|.... ...+|.++-.+...|.-..+..    ..+....  .+ +.++.++|+||++.+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~----~~~~v~~--~~-~~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGG----KSVTVQD--AA-EFDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECC----cceEEEe--Cc-hhhccCCCEEEECCC
Confidence            45799999999999999999998853 2458888866543333222221    1233211  12 244589999999764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.80  E-value=0.35  Score=41.88  Aligned_cols=67  Identities=10%  Similarity=0.089  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +..||.|+|| |.||...+..|...|.  ++++++.+... ...++.    ...+..  ..-. ++.+.++|+||.+.
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~----~i~~~~--~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELP----YITWKQ--KTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhcc----CcEEEe--cccC-hhcCCCceEEEECC
Confidence            4459999999 9999999999998887  88999743222 222221    111111  1112 35589999999874

>PRK07041 short chain dehydrogenase; Provisional

Probab=94.79  E-value=0.21  Score=45.00  Aligned_cols=108  Identities=15%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCcHHhhhC---CCCEEEE
Q 018265           50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLEDALT---GMDIVII  120 (358)
Q Consensus        50 ~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~---~aDiVIi  120 (358)
                      .|+||+|.+|+.++..|++.|.  +|++++++.  ......++...   ..+..+.    ...++.++++   ..|++|+
T Consensus         1 lItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~   75 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGGG---APVRTAALDITDEAAVDAFFAEAGPFDHVVI   75 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHhcCCCCEEEE
Confidence            3899999999999999999887  899999865  12222223211   1122111    1123333343   3699999


Q ss_pred             cCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          121 PAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       121 ~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      .+|.....   ..+   -...+..|+.....+.+.. .....+.+++++
T Consensus        76 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-~~~~~g~iv~~s  123 (230)
T PRK07041         76 TAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAA-RIAPGGSLTFVS  123 (230)
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhh-hhcCCeEEEEEC
Confidence            98864221   111   2233455666555565522 223345555543

>PRK07589 ornithine cyclodeaminase; Validated

Probab=94.77  E-value=0.15  Score=50.03  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=49.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..+++|||+ |..+...+..+..--.+.+|.++|++.  ....+.++.+.  ...+..   ..+.++++++||+|+.+.
T Consensus       129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence            358999998 998887776665443467999999986  33444555431  123433   257899999999999864

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.76  E-value=0.079  Score=48.90  Aligned_cols=74  Identities=16%  Similarity=0.181  Sum_probs=48.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      |+|.|+||+|++|+++...|+..+.  +++..-++......+  . ...............+..+++|.|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~--~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAAL--A-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhh--c-CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence            5899999999999999999998876  777665554222222  2 111011111222356778899999999987644

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.75  E-value=0.22  Score=39.82  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +..+|.|||+ |.+|..-+..|+..|-  ++.++....   ...  ...   ..+..    ..+++.+.++|+|+.+.+
T Consensus         6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA--~v~vis~~~---~~~--~~~---i~~~~----~~~~~~l~~~~lV~~at~   69 (103)
T PF13241_consen    6 KGKRVLVVGG-GPVAARKARLLLEAGA--KVTVISPEI---EFS--EGL---IQLIR----REFEEDLDGADLVFAATD   69 (103)
T ss_dssp             TT-EEEEEEE-SHHHHHHHHHHCCCTB--EEEEEESSE---HHH--HTS---CEEEE----SS-GGGCTTESEEEE-SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCch---hhh--hhH---HHHHh----hhHHHHHhhheEEEecCC
Confidence            4559999999 9999999999999885  999998753   111  111   12221    235677999999998753

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=94.74  E-value=0.15  Score=50.44  Aligned_cols=62  Identities=16%  Similarity=0.217  Sum_probs=45.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ...++|+|||. |.||+.++..+..-|.  ++..+|..... .    ..     ...    ..++++.++.||+|++..
T Consensus       114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~-~----~~-----~~~----~~~L~ell~~sDiI~lh~  175 (378)
T PRK15438        114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD-R----GD-----EGD----FRSLDELVQEADILTFHT  175 (378)
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc-c----cc-----ccc----cCCHHHHHhhCCEEEEeC
Confidence            34569999998 9999999999987777  99999963211 0    00     001    135788899999999854

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.70  E-value=0.17  Score=51.97  Aligned_cols=151  Identities=18%  Similarity=0.209  Sum_probs=81.8

Q ss_pred             cCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEE-----------eCC
Q 018265           38 CRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGF-----------LGQ  105 (358)
Q Consensus        38 ~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~-----------~~t  105 (358)
                      -++.+..++.||+|+|+ |.+|...+..+...|-  +|+.+|.+. ....+..+.-  .+..+...           ..+
T Consensus       157 ~taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA--~~v~i~~~e~~~~~~gya~~~s  231 (509)
T PRK09424        157 ITAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGA--EFLELDFEEEGGSGDGYAKVMS  231 (509)
T ss_pred             eeccCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCC--eEEEeccccccccccchhhhcc
Confidence            34556677889999998 9999999988888886  799999976 3333333211  00001000           001


Q ss_pred             CcH--------HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHH-HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHH
Q 018265          106 QQL--------EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       106 ~d~--------~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i-~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~  176 (358)
                      .++        .+.++++|+||.++|.|.++.          -.. .++..+.++   |.+.|+.++.+-+-.+.+ +.-
T Consensus       232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~a----------P~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~-t~~  297 (509)
T PRK09424        232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPA----------PKLITAEMVASMK---PGSVIVDLAAENGGNCEL-TVP  297 (509)
T ss_pred             hhHHHHHHHHHHhccCCCCEEEECCCCCcccC----------cchHHHHHHHhcC---CCCEEEEEccCCCCCccc-ccC
Confidence            121        222468999999999874321          122 244444444   788888777643221110 000


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                      .........-.++|.+++++ ++....++.+.
T Consensus       298 ~~~v~~~~gVti~Gv~n~P~-~~p~~As~lla  328 (509)
T PRK09424        298 GEVVVTDNGVTIIGYTDLPS-RLPTQSSQLYG  328 (509)
T ss_pred             ccceEeECCEEEEEeCCCch-hHHHHHHHHHH
Confidence            00110002236678776764 55544444443

>PLN02306 hydroxypyruvate reductase

Probab=94.67  E-value=0.25  Score=49.15  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=58.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCchhHH---HHHhcC---CCCCeEEEEeCCCcHHhhhCCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISHM---DTNAVVRGFLGQQQLEDALTGMD  116 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~~~g~~---~dl~~~---~~~~~v~~~~~t~d~~~al~~aD  116 (358)
                      ....+|+|+|. |.||+.+|..+. .-|.  +|..||........   ..+...   ......... ...++++.++.||
T Consensus       163 L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~sD  238 (386)
T PLN02306        163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREAD  238 (386)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccccc-ccCCHHHHHhhCC
Confidence            34569999998 999999999875 3355  89999975421111   011100   000011111 1247899999999


Q ss_pred             EEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       117 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +|++..-..  + +        |-.++..  +.+....|++++||++
T Consensus       239 iV~lh~Plt--~-~--------T~~lin~--~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        239 VISLHPVLD--K-T--------TYHLINK--ERLALMKKEAVLVNAS  272 (386)
T ss_pred             EEEEeCCCC--h-h--------hhhhcCH--HHHHhCCCCeEEEECC
Confidence            999964221  1 1        1111111  2333344789999986

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.67  E-value=0.16  Score=53.73  Aligned_cols=137  Identities=16%  Similarity=0.217  Sum_probs=80.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcH----HhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL----EDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~al~~aDiVIi~  121 (358)
                      ..+|.|+|. |.+|+.++..|...+.  +++++|.|+..  +..+.+.. ..-+.+  ..+|.    +.-+++||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFG-MKVFYG--DATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcC-CeEEEE--eCCCHHHHHhcCCCcCCEEEEE
Confidence            468999998 9999999999998887  89999988622  22222221 122222  11232    1234689999988


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~  200 (358)
                      ...+           ..|.    .++..+++..|+..++.-+ |+.+.      +.+++. |.  +.++--+.-.+.++-
T Consensus       472 ~~d~-----------~~n~----~i~~~ar~~~p~~~iiaRa~d~~~~------~~L~~~-Ga--d~v~~e~~e~sl~l~  527 (621)
T PRK03562        472 IDDP-----------QTSL----QLVELVKEHFPHLQIIARARDVDHY------IRLRQA-GV--EKPERETFEGALKSG  527 (621)
T ss_pred             eCCH-----------HHHH----HHHHHHHHhCCCCeEEEEECCHHHH------HHHHHC-CC--CEEehhhHhHHHHHH
Confidence            4321           3343    3555666667887766544 44321      123333 32  344433554555666


Q ss_pred             HHHHHHhCCCCCCC
Q 018265          201 TFVAEVLGLDPREV  214 (358)
Q Consensus       201 ~~lA~~l~v~~~~v  214 (358)
                      +.+-+.+|++++++
T Consensus       528 ~~~L~~lg~~~~~~  541 (621)
T PRK03562        528 RLVLESLGLGPYEA  541 (621)
T ss_pred             HHHHHHcCCCHHHH
Confidence            66667778776444

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.61  E-value=0.19  Score=43.72  Aligned_cols=57  Identities=30%  Similarity=0.465  Sum_probs=41.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+..||+|||.+..||..++.+|..++.  .+.+.+..                       |.|+++-++.||+||..+|
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G   88 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG   88 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence            3455999999988899999999998865  55555432                       3466788999999999988


Q ss_pred             CC
Q 018265          124 VP  125 (358)
Q Consensus       124 ~~  125 (358)
                      .|
T Consensus        89 ~~   90 (160)
T PF02882_consen   89 KP   90 (160)
T ss_dssp             ST
T ss_pred             cc
Confidence            65

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.60  E-value=0.17  Score=50.05  Aligned_cols=34  Identities=29%  Similarity=0.548  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~   81 (358)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|.|+|.+
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            458999998 9999999999999886 489999987

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=94.59  E-value=0.15  Score=50.61  Aligned_cols=61  Identities=20%  Similarity=0.189  Sum_probs=45.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ...+|+|||. |.||+.++..+..-|.  ++..+|.....   .  ..     ...    ..++++.+++||+|++..
T Consensus       115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~--~~-----~~~----~~~l~ell~~aDiV~lh~  175 (381)
T PRK00257        115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A--EG-----DGD----FVSLERILEECDVISLHT  175 (381)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----Ccc----ccCHHHHHhhCCEEEEeC
Confidence            4568999998 9999999999987777  99999974311   0  00     011    135788899999999974

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.55  E-value=0.18  Score=49.61  Aligned_cols=35  Identities=31%  Similarity=0.506  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        28 ~~~VlivG~-GGlGs~~a~~La~~Gv-g~i~lvD~D~   62 (355)
T PRK05597         28 DAKVAVIGA-GGLGSPALLYLAGAGV-GHITIIDDDT   62 (355)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            358999998 9999999999999887 4899999875

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=94.54  E-value=0.24  Score=48.05  Aligned_cols=94  Identities=18%  Similarity=0.106  Sum_probs=57.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      .....+|+|||. |.||..++..+. .-|.  +|+.+|.........++       .+..    .++++.++.||+|++.
T Consensus       142 ~L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~~----~~l~ell~~sDvv~lh  207 (323)
T PRK15409        142 DVHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NARY----CDLDTLLQESDFVCII  207 (323)
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcEe----cCHHHHHHhCCEEEEe
Confidence            345679999998 999999998876 3444  88888864311111101       1111    2578999999999997


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ....  +         .|-.++.  .+.+.+..|++++||++
T Consensus       208 ~plt--~---------~T~~li~--~~~l~~mk~ga~lIN~a  236 (323)
T PRK15409        208 LPLT--D---------ETHHLFG--AEQFAKMKSSAIFINAG  236 (323)
T ss_pred             CCCC--h---------HHhhccC--HHHHhcCCCCeEEEECC
Confidence            4321  1         1111111  11233334899999986

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.53  E-value=0.45  Score=44.94  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |.||+.++..|+..|+ .+|.|+|.+.
T Consensus        30 ~s~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD   64 (268)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            448999998 9999999999999986 4899999874

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.51  E-value=0.32  Score=46.40  Aligned_cols=75  Identities=19%  Similarity=0.276  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-------------------hhH--HHHHhcCCCCCeEEEEe
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------------------PGV--TADISHMDTNAVVRGFL  103 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-------------------~g~--~~dl~~~~~~~~v~~~~  103 (358)
                      ...||.|+|+ |.+|+.++..|+..|+ ..|.|+|.+..                   +++  ...|........+....
T Consensus        18 ~~s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~   95 (286)
T cd01491          18 QKSNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST   95 (286)
T ss_pred             hcCcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            3458999998 9999999999999987 48999998740                   011  11222222233444443


Q ss_pred             CCCcHHhhhCCCCEEEEcC
Q 018265          104 GQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus       104 ~t~d~~~al~~aDiVIi~a  122 (358)
                      ...+ ++-+.+.|+||.+.
T Consensus        96 ~~~~-~~~l~~fdvVV~~~  113 (286)
T cd01491          96 GPLT-TDELLKFQVVVLTD  113 (286)
T ss_pred             ccCC-HHHHhcCCEEEEec
Confidence            3323 46789999998884

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.50  E-value=0.27  Score=49.03  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |.+|+.++..|+..|+. +|.|+|.+.
T Consensus        42 ~~~VlviG~-GGlGs~va~~La~~Gvg-~i~lvD~D~   76 (392)
T PRK07878         42 NARVLVIGA-GGLGSPTLLYLAAAGVG-TLGIVEFDV   76 (392)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCCE
Confidence            458999998 99999999999998864 899999874

>PRK06823 ornithine cyclodeaminase; Validated

Probab=94.50  E-value=0.24  Score=47.95  Aligned_cols=71  Identities=10%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..+++|+|+ |..+..-+..+..-..+.+|.++|++..  ...+..+.+.  ...+...   .+.++++++||+|+.+.
T Consensus       128 ~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT  200 (315)
T PRK06823        128 VSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence            459999998 9998888877766545689999999872  2233333322  2234332   46789999999999864

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.49  E-value=0.13  Score=48.94  Aligned_cols=57  Identities=23%  Similarity=0.410  Sum_probs=44.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+..+|+|+|++|.+|..++..|+..+.  ++.+++..                       +.++.+.+++||+||.+.|
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG  211 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVG  211 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccC
Confidence            3456999999944599999999988876  88888631                       1345677899999999986


Q ss_pred             CC
Q 018265          124 VP  125 (358)
Q Consensus       124 ~~  125 (358)
                      .|
T Consensus       212 ~~  213 (283)
T PRK14192        212 KP  213 (283)
T ss_pred             CC
Confidence            44

>PLN00203 glutamyl-tRNA reductase

Probab=94.44  E-value=0.38  Score=49.74  Aligned_cols=122  Identities=16%  Similarity=0.146  Sum_probs=70.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ....||+|||+ |.+|..++..|...|. .+|++++++.....  .+........+... ...++.+++.+||+||.+.+
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~--~La~~~~g~~i~~~-~~~dl~~al~~aDVVIsAT~  338 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVA--ALREEFPDVEIIYK-PLDEMLACAAEADVVFTSTS  338 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHH--HHHHHhCCCceEee-cHhhHHHHHhcCCEEEEccC
Confidence            34569999998 9999999998887774 47999998752222  22211001112221 12456788999999998755


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      .+..             -+..+..+.+.+.    ...-++|-++.|=|+-..        ...+|.-.+|-+
T Consensus       339 s~~p-------------vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~--------v~~l~~v~lydi  389 (519)
T PLN00203        339 SETP-------------LFLKEHVEALPPASDTVGGKRLFVDISVPRNVGAC--------VSELESARVYNV  389 (519)
T ss_pred             CCCC-------------eeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccc--------cccCCCCeEEEe
Confidence            4321             1122333333211    112367778999887632        224554455555

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.44  E-value=0.12  Score=49.12  Aligned_cols=74  Identities=12%  Similarity=0.177  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +..+++|+|+ |.+|.+++..|...|. .+|.+++++..  +..+.++...   ..+.......++.+.+.++|+||.+.
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~---~~~~~~~~~~~~~~~~~~~DiVInaT  198 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQV---GVITRLEGDSGGLAIEKAAEVLVSTV  198 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhc---CcceeccchhhhhhcccCCCEEEECC
Confidence            4568999998 9999999999998775 48999998752  2222233211   11222111123345678999999975


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      .
T Consensus       199 p  199 (282)
T TIGR01809       199 P  199 (282)
T ss_pred             C
Confidence            4

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=94.41  E-value=0.64  Score=43.05  Aligned_cols=156  Identities=15%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             CCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHHHHhcCCCCCe-EEE-EeCCCcHH-------h
Q 018265           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAV-VRG-FLGQQQLE-------D  110 (358)
Q Consensus        46 ~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~~----~g~~~dl~~~~~~~~-v~~-~~~t~d~~-------~  110 (358)
                      ...+.|+||+  +.+|..++..|+..|.  ++++.+.+..    .....++........ +.. .+...+.+       +
T Consensus         6 ~k~~lItGas~~~GIG~aia~~la~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   83 (258)
T PRK07370          6 GKKALVTGIANNRSIAWGIAQQLHAAGA--ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ   83 (258)
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence            3478999985  5899999999999887  7877764321    112222322111000 100 00011111       2


Q ss_pred             hhCCCCEEEEcCCCCCC-----C--CCCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHH
Q 018265          111 ALTGMDIVIIPAGVPRK-----P--GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~  176 (358)
                      .+...|++|+.+|....     +  ..+.   ...+..|+    .+.+.+.+.+++   .+.|++++......       
T Consensus        84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~---~g~Iv~isS~~~~~-------  153 (258)
T PRK07370         84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE---GGSIVTLTYLGGVR-------  153 (258)
T ss_pred             HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh---CCeEEEEecccccc-------
Confidence            23468999999986431     1  1112   12233343    344555555543   46777766533211       


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                           +.|..-.++.+.-.-..+-+.++..++  +..|++..+-
T Consensus       154 -----~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~Vn~i~  190 (258)
T PRK07370        154 -----AIPNYNVMGVAKAALEASVRYLAAELG--PKNIRVNAIS  190 (258)
T ss_pred             -----CCcccchhhHHHHHHHHHHHHHHHHhC--cCCeEEEEEe
Confidence                 233333456655444567777887775  4556554443

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.39  E-value=0.13  Score=50.28  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=26.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEe
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYD   79 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el-~L~D   79 (358)
                      ++||+|+||+|.+|..++..|...+.. ++ .+.|
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~-elv~v~~   35 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEV-EIVAVTS   35 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEC
Confidence            479999999999999999988876544 55 5566

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=94.36  E-value=0.53  Score=44.28  Aligned_cols=95  Identities=16%  Similarity=0.146  Sum_probs=61.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEE-EeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhh-hCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHL-YDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-LTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L-~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a-l~~aDiVIi~a  122 (358)
                      .+||+|||. |.+|..++..|..... ..+++. +|.+.  ....++...     ...   .+|+++. ..+.|+||.+|
T Consensus         2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~~-----~~~---~~~l~~ll~~~~DlVVE~A   70 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAGR-----VAL---LDGLPGLLAWRPDLVVEAA   70 (267)
T ss_pred             ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhcc-----Ccc---cCCHHHHhhcCCCEEEECC
Confidence            369999998 9999999998876532 125444 44432  222333321     112   2456563 48899999998


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      +                ...++++++.+-+.+.|-.++-++-=.|
T Consensus        71 ~----------------~~av~e~~~~iL~~g~dlvv~SvGALaD   99 (267)
T PRK13301         71 G----------------QQAIAEHAEGCLTAGLDMIICSAGALAD   99 (267)
T ss_pred             C----------------HHHHHHHHHHHHhcCCCEEEEChhHhcC
Confidence            6                4788899999988777765554443344

>PRK13529 malate dehydrogenase; Provisional

Probab=94.33  E-value=0.3  Score=50.52  Aligned_cols=105  Identities=19%  Similarity=0.318  Sum_probs=70.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCC--ch------hHHHHHhcCCCCCeEEEE---eCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--TP------GVTADISHMDTNAVVRGF---LGQ  105 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~----~~~~-----~el~L~D~~~--~~------g~~~dl~~~~~~~~v~~~---~~t  105 (358)
                      ..||++.|| |..|-.++..|..    .|+-     ..++++|.+.  ..      .....+.+..  ......   ...
T Consensus       295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~~~~~~  371 (563)
T PRK13529        295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWDTEGDV  371 (563)
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccccccCC
Confidence            369999999 9999999988875    4653     5899999875  11      1111122110  111100   112


Q ss_pred             CcHHhhhCCC--CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          106 QQLEDALTGM--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       106 ~d~~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      .++.++++++  |+.|=+.+.+   |           -+-+++.+.|.+++++.+|+-.|||..
T Consensus       372 ~~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~  421 (563)
T PRK13529        372 ISLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTS  421 (563)
T ss_pred             CCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            5789999999  9888765543   2           234677888888998999888899996

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.33  E-value=0.16  Score=50.91  Aligned_cols=75  Identities=20%  Similarity=0.186  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+..||+|+|+ |.+|..++..|...|. .+|.+++++..+  +..|........+..   ..++.+.+.+||+||.+.+
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~-~~I~V~nRt~~r--a~~La~~~~~~~~~~---~~~l~~~l~~aDiVI~aT~  251 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAP-KQIMLANRTIEK--AQKITSAFRNASAHY---LSELPQLIKKADIIIAAVN  251 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEECCCHHH--HHHHHHHhcCCeEec---HHHHHHHhccCCEEEECcC
Confidence            44568999998 9999999999988775 389999886422  222322110011111   2456788999999999877


Q ss_pred             CC
Q 018265          124 VP  125 (358)
Q Consensus       124 ~~  125 (358)
                      .|
T Consensus       252 a~  253 (414)
T PRK13940        252 VL  253 (414)
T ss_pred             CC
Confidence            65

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.31  E-value=0.39  Score=39.24  Aligned_cols=72  Identities=25%  Similarity=0.321  Sum_probs=39.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCchhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ||+|+|++|.+|..++..+...+.+ ++.-+ +.+...+......+... ......+ ...+++  ..++|+||++.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~DvV~~~~~   74 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLEL-EPEDFE--ELAVDIVFLALP   74 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCccccccccccc-ccCChh--hcCCCEEEEcCC
Confidence            6899998799999999988886433 44444 65432222211121110 0001111 113332  359999999853

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		0.0
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-170
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		1e-101
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		1e-101
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		1e-89
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		1e-89
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		2e-88
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		3e-86
1guz_A	310	Structural Basis For Thermophilic Protein Stability		2e-24
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		3e-24
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		1e-21
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		2e-21
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		2e-21
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		4e-20
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		1e-19
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		1e-19
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		2e-19
1guy_A	309	Structural Basis For Thermophilic Protein Stability		3e-19
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		3e-19
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		5e-18
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		5e-18
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		6e-18
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-17
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-17
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		2e-17
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-17
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		7e-17
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		8e-17
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		8e-17
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		4e-16
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		4e-16
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		2e-15
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		3e-15
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		3e-15
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		5e-15
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		8e-15
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		1e-14
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		6e-14
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		2e-13
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		2e-13
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		2e-12
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		2e-12
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		3e-12
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		7e-12
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		1e-11
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		1e-11
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		3e-11
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		4e-11
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		2e-10
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		2e-10
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		5e-10
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		6e-10
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		1e-09
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		1e-09
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		2e-09
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		2e-09
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		2e-09
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-09
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		4e-09
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		6e-09
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		6e-09
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		8e-09
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		8e-09
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		9e-09
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		1e-08
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		1e-08
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		1e-08
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		2e-08
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		4e-08
1ldb_A	317	Structure Determination And Refinement Of Bacillus		5e-08
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		6e-08
1bmd_A	327	Determinants Of Protein Thermostability Observed In		2e-07
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-07
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		2e-07
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		6e-07
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		9e-07
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		9e-07
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		9e-07
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		2e-05
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		2e-05
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-05
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-05
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		6e-05

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/355 (88%), Positives = 329/355 (92%), Gaps = 1/355 (0%)
Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240
Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300
Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
            VTELPFFASKVRLGR GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  593 bits (1529), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/319 (90%), Positives = 303/319 (94%)
Query: 39  RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
           RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 278
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA 
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 279 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 338
           KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300
Query: 339 EKAKKELAGSIQKGVSFVR 357
           EKAKKELAGSI+KGVSF+R
Sbjct: 301 EKAKKELAGSIEKGVSFIR 319

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/310 (57%), Positives = 231/310 (74%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
           +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 269
Query: 288 LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG 347
           + G  GV+EC++V S  TE  +F++ + LG+ GIE+   +G ++ +E   +  A  EL  
Sbjct: 270 MNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKA 329
Query: 348 SIQKGVSFVR 357
           SI+KG  FV+
Sbjct: 330 SIKKGEDFVK 339

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/310 (57%), Positives = 230/310 (74%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
           +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 288 LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG 347
           + G  GV+EC++V S  T+ P+F++ + LG+ GIE+   +G ++ +E   + +A  EL  
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
Query: 348 SIQKGVSFVR 357
           SI+KG  FV+
Sbjct: 302 SIKKGEEFVK 311

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  326 bits (835), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/314 (56%), Positives = 216/314 (68%), Gaps = 4/314 (1%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61  EDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
           VTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
           +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 345 LAGSIQKGVSFVRK 358
           L   I  G  FV K
Sbjct: 299 LKKDIALGEEFVNK 312

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  326 bits (835), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/314 (56%), Positives = 216/314 (68%), Gaps = 4/314 (1%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61  EDA-TPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
           VTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
           +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 345 LAGSIQKGVSFVRK 358
           L   I  G  FV K
Sbjct: 299 LKKDIALGQEFVNK 312

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  322 bits (825), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 175/314 (55%), Positives = 215/314 (68%), Gaps = 4/314 (1%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61  EDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVN+TV IAAEV KK G YD  +L GVT LD++ +NTFVAE+ G  P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
           VTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
           +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 345 LAGSIQKGVSFVRK 358
           L   I  G  FV K
Sbjct: 299 LKKDIALGQEFVNK 312

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  315 bits (807), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 175/316 (55%), Positives = 218/316 (68%), Gaps = 5/316 (1%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRG 101
           S   KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T+  ++G
Sbjct: 1   SNAXKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKG 60
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
           + G+     AL G D+V+I AGV RKPG  R DLFN+NAGIVK+L E IA  CP A + +
Sbjct: 61  YAGEDPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGI 119
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           I+NPVN+TVPIAAEV KK G YD ++L GVT LDV+R+ TFVAE+ G DP EV VPV+GG
Sbjct: 120 ITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGG 179
Query: 222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFA 281
           H+GVTILPLLSQV+     +  EI  LT RIQN GTEVVEAK G GSATLS   AA +F 
Sbjct: 180 HSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFG 238
Query: 282 DACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA 341
            A ++ L+G+  VIE AYV        FFA  V+LG+ G+EEI   G L+++E+A L+  
Sbjct: 239 LALVKALQGEE-VIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAALDGX 297
Query: 342 KKELAGSIQKGVSFVR 357
            + L   IQ GV FV+
Sbjct: 298 LETLNSDIQIGVDFVK 313

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 155/322 (48%), Gaps = 51/322 (15%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH------MDTNAV 98
            K+ V+GA G +G   A  +    L   L L DVV     G   D+         DT   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
                G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I
Sbjct: 60  -----GSNDYADTANS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
           + ++SNP++    +A   + + G   PK R++G+  +LD  R  +F+A  LG+  ++++ 
Sbjct: 114 IIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATL 271
            V+GGH G  ++P++        P   L P E ID L +R +NGG E+VE     GSA  
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFY 226
Query: 272 SMAYAAAKFADA----------CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGI 321
           + A +  +  ++          C  GL G  G+           +  F    V+LGR G+
Sbjct: 227 APASSVVEMVESIVLDRKRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGV 275
Query: 322 EEIYSLGPLNEYERAGLEKAKK 343
           E+IY +  L++ +   L+K+ K
Sbjct: 276 EQIYEIN-LDQADLDLLQKSAK 296

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 36/245 (14%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ ++SNP++    +A  
Sbjct: 71  DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA-- 128
Query: 176 VFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
            + + G   PK R++G+  +LD  R  +F+A  LG+  ++++  V+GGH G  ++P++  
Sbjct: 129 -WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKY 184
Query: 234 VK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA----- 283
                 P   L P E ID L +R +NGG E+VE     GSA  + A +  +  ++     
Sbjct: 185 TTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDR 243
Query: 284 -----CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 338
                C  GL G  G+           +  F    V+LGR G+E+IY +  L++ +   L
Sbjct: 244 KRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQIYEIN-LDQADLDLL 291
Query: 339 EKAKK 343
           +K+ K
Sbjct: 292 QKSAK 296

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 161/309 (52%), Gaps = 30/309 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDTNAVVRGF--- 102
           KV+V+GA G  G   A L+    L  V+ L D+  +  P     +  ++ + V +GF   
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPV-QGFDAN 66
Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
            +G     D     D+V+I AG+ RKPGM+RDDL   N+ I+K++   IAK  P AI+ +
Sbjct: 67  IIGTSDYADTADS-DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV++   +   VFK+ G +  +R++G + +LD  R  TF+A+ L L  +++   V+G
Sbjct: 126 LTNPVDA---MTYSVFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLG 181
Query: 221 GHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G  ++PL+        P  +L P E ++ + +R + GG E+V    G GSA  + A 
Sbjct: 182 GH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAA 239
Query: 276 AAAKFADACLRGLRG---DAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNE 332
           +  +  +A L+  R        +E  Y  S +    +    V LG  GIE+I  L  L +
Sbjct: 240 SLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIELELLAD 295
Query: 333 YERAGLEKA 341
            E+  L+++
Sbjct: 296 -EKEALDRS 303

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 150/316 (47%), Gaps = 45/316 (14%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV------VRG 101
           K+ ++GA G IG  LA L  I  L  V+ L+D+         +  + T  +      VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + LE++    D+VI+ AGVPRKPG +RDDL  IN  + +T+ EGI   CP A V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    I     +K       +++G   +LD  R  TF+A+ L +  ++V   V G
Sbjct: 121 ITNPLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXG 176
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G T +PL          L Q+     L    +D +  R ++GG E+V A    GSA 
Sbjct: 177 GH-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAY 234
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 330
            + A A  + A++ L+  +    ++ C             A+KV+ G  G++E   +G  
Sbjct: 235 YAPAAAGIQXAESFLKDKK---XILPC-------------AAKVKAGXYGLDEDLFVGVP 278
Query: 331 NEYERAGLEKAKKELA 346
            E    G+   + E++
Sbjct: 279 TEISANGVRPIEVEIS 294

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 157/321 (48%), Gaps = 33/321 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K++++GA G IG  +A+L+    L  V +++D++     G   D++H M          G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +   E  L   D+VII AGVPRKP MTR DL  +NA IV ++ E + K CP A V  I+N
Sbjct: 74  ENNYE-YLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P+++ V      FK+       ++ G++ +LD  R    ++  LG+ P +V   VVGGH 
Sbjct: 133 PLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH- 187
Query: 224 GVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLS 272
           G  ++PL S V               +T ++I+ +  +   GG E+VE  KTG+     +
Sbjct: 188 GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGS-----A 242
Query: 273 MAYAAAKFADACLRGLRGDAGVIECAYVAS---TVTELPFFASKVRLGRAGIEEIYSLGP 329
               AA         L+    V+ C+   +    V  L F    V +G+ GIE++  +  
Sbjct: 243 FYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL-FVGVPVVIGKNGIEDVVIVN- 300
Query: 330 LNEYERAGLEKAKKELAGSIQ 350
           L++ E++   K+ + +   +Q
Sbjct: 301 LSDDEKSLFSKSVESIQNLVQ 321

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 156/323 (48%), Gaps = 43/323 (13%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMD-TNAVVRGFLG 104
           K+A++G+ G IG  LA L  +  L  V+ L+D+   TP G   DI+     +     F G
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                 A+ G D+VI+ AGVPRKPGM+RDDL  IN  +++ +  GI K  P+A V  I+N
Sbjct: 67  ANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           P+++ V  A + F  +  +    + GV  LD  R   F++E   +   +V V V+GGH  
Sbjct: 126 PLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD 182
Query: 225 VTI----------LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
             +          +PL   VK   + +  ++D +  R ++GG E+V      GSA  + A
Sbjct: 183 SMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV-GLLKTGSAFYAPA 240
Query: 275 YAAAKFADACLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEI 324
            +A + A++ L+           L G  GV +      TV           +G  G+E I
Sbjct: 241 ASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDMYVGVPTV-----------IGANGVERI 289
Query: 325 YSLGPLNEYERAGLEKAKKELAG 347
             +  L++ E+A  +K+   +AG
Sbjct: 290 IEI-DLDKDEKAQFDKSVASVAG 311

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 131/244 (53%), Gaps = 20/244 (8%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+  ++V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 288
            +S +  S  + P  +  + +R + GG E+V   KT  GSA  + A A A+  +A L+  
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 289 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
           +    V   AY+     + ++ +F   V LG  G+E+I  L PLNE E A L  + K + 
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 347 GSIQ 350
            ++ 
Sbjct: 301 ATLD 304

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 150/322 (46%), Gaps = 51/322 (15%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH------MDTNAV 98
            K+ V+GA G +G   A  +    L   L L DVV     G   D+         DT   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
                G     D     DIV+I AG+PRKPGMTR+DL ++NAGIV+ +   I +     I
Sbjct: 60  -----GSNDYADTANS-DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
           + ++SNP++    +A   ++K G   PK R++G+  +LD  R  +F+A  LG+  ++V  
Sbjct: 114 IVVVSNPLDIMTHVA---WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATL 271
            V+GGH G  ++P++        P   L   E I  L +R + GG E+V      GSA  
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFY 226
Query: 272 SMAYAAAKFADA----------CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGI 321
           S A +  +  ++          C   L G  G+           +  F    V+LG+ G+
Sbjct: 227 SPATSVVEMVESIVLDRKRVLTCAVSLDGQYGI-----------DGTFVGVPVKLGKNGV 275
Query: 322 EEIYSLGPLNEYERAGLEKAKK 343
           E IY +  L++ +   L+K+ K
Sbjct: 276 EHIYEI-KLDQSDLDLLQKSAK 296

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 20/243 (8%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+  ++V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 288
            +S +  S  + P  +  + +R + GG E+V   KT  GSA  + A A A+  +A L+  
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 289 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
           +    V   AY+     + ++ +F   V LG  G+E+I  L PLNE E A L  + K + 
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 347 GSI 349
            ++
Sbjct: 301 ATL 303

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 20/244 (8%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+   +V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 288
            +S +  S  + P  +  + +R + GG E+V   KT  GSA  + A A A+  +A L+  
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 289 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
           +    V   AY+     + ++ +F   V LG  G+E+I  L PLNE E A L  + K + 
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 347 GSIQ 350
            ++ 
Sbjct: 301 ATLD 304

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 20/244 (8%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+   +V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 288
            +S +  S  + P  +  + +R + GG E+V   KT  GSA  + A A A+  +A L+  
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 289 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
           +    V   AY+     + ++ +F   V LG  G+E+I  L PLNE E A L  + K + 
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 347 GSIQ 350
            ++ 
Sbjct: 301 ATLD 304

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 67  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 124 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 178
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 179 QATVIGTH-GDCMVPLVRYI 197

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMXE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 36/322 (11%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 59  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 231
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
             S  ++ A A  + A++ L+ L+     + ++E  Y  S +    F  + V LG  G+E
Sbjct: 232 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 286
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
           ++  L  LN  E+A  ++A  E
Sbjct: 287 QVIEL-QLNSEEKAKFDEAIAE 307

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 36/322 (11%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
             S  ++ A A  + A++ L+ L+     + ++E  Y  S +    F  + V LG  G+E
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 287
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
           ++  L  LN  E+A  ++A  E
Sbjct: 288 QVIEL-QLNSEEKAKFDEAIAE 308

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 36/322 (11%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
             S  ++ A A  + A++ L+ L+     + ++E  Y  S +    F  + V LG  G+E
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 287
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
           ++  L  LN  E+A  ++A  E
Sbjct: 288 QVIEL-QLNSEEKAKFDEAIAE 308

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 36/322 (11%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 59  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 231
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
             S  ++ A A  + A++ L+ L+     + ++E  Y  S +    F  + V LG  G+E
Sbjct: 232 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 286
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
           ++  L  LN  E+A  ++A  E
Sbjct: 287 QVIEL-QLNSEEKAKFDEAIAE 307

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 31/308 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
               + + G D+VII AG+ + PG      +R+DL   NA I++ + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           +++NP++  V    + F +        + G+  +LD  R   F+A+ L + PR++   V+
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 220 GGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269
           G H G  +LPL          L +      +T  ++  + +R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 270 TLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSL 327
             + A +A   A A    L+ +  V+ C+        L   F      +G  GIE++  L
Sbjct: 242 YYAPALSAITMAQAF---LKDEKRVLPCSVYCQGEYGLHDMFIGLPAVIGGGGIEQVIEL 298
Query: 328 GPLNEYER 335
              +E + 
Sbjct: 299 ELTHEEQE 306

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 31/308 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
               + + G D+VII AG+ + PG      +R+DL   NA I++ + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           +++NP++  V    + F +        + G+  +LD  R   F+A+ L + PR++   V+
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 220 GGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269
           G H G  +LPL          L +      +T  ++  + +R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 270 TLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSL 327
             + A +A   A A    L+ +  V+ C+        L   F      +G  GIE++  L
Sbjct: 242 YYAPALSAITMAQAF---LKDEKRVLPCSVYCQGEYGLHDMFIGLPAVIGGGGIEQVIEL 298
Query: 328 GPLNEYER 335
              +E + 
Sbjct: 299 ELTHEEQE 306

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 16/176 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-------- 222
           +    F K    DP+++ G  T+LD  R  T +A+  G  PR V V V+G H        
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 223 AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
           +G  I  +PL +  +         ++   ++ +    E++E K GA    +++A A
Sbjct: 181 SGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK-GATHYAIALAVA 235

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 30/319 (9%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHAA 234
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
              A  +     A+     L+ +   + ++E  Y  S +    F  + V LG  G+E++ 
Sbjct: 235 PYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVI 290
Query: 326 SLGPLNEYERAGLEKAKKE 344
            L  LN  E+A  ++A  E
Sbjct: 291 EL-QLNSEEKAKFDEAIAE 308

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 36/322 (11%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       R DL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
             S  ++ A A  + A++ L+ L+     + ++E  Y  S +    F  + V LG  G+E
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 287
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
           ++  L  LN  E+A  ++A  E
Sbjct: 288 QVIEL-QLNSEEKAKFDEAIAE 308

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 38/323 (11%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ ++DVV N P G   D SH +  A    
Sbjct: 1   TPKPKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I   CP 
Sbjct: 59  KVTGSNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREV 214
           A + +++NPV+  V +   +F+  G   PK +++G+  +LD  R   ++++ L + PR+V
Sbjct: 119 AFIIVVTNPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 173
Query: 215 DVPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKT 264
           +  +VG H    +L          PL   +  +  +T  E++ + DR  N   E+V    
Sbjct: 174 NALIVGAHGNKMVLLKRYITVGGIPLQEFIN-NKKITDEEVEGIFDRTVNTALEIVNL-- 230
Query: 265 GAGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGI 321
              S  ++ A A  + A++ L+ ++     + ++E  Y  S +    F  + + +G  G+
Sbjct: 231 -LASPYVAPAAAIIEMAESYLKDIKKVLVCSTLLEGQYGHSNI----FGGTPLVIGGTGV 285
Query: 322 EEIYSLGPLNEYERAGLEKAKKE 344
           E++  L  LN  E+   ++A  E
Sbjct: 286 EQVIEL-QLNAEEKTKFDEAVAE 307

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 149/322 (46%), Gaps = 36/322 (11%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ ++D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L   D+VI+ AG  + PG       RDDL  +N  I+  +   I   CP 
Sbjct: 60  KVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +  +  +T  E+D + DR  N   E+V     
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFIN-NKKITDQELDAIFDRTINTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
             S  ++ A A  + A++ +R LR     + ++E  Y    +    F  + + +G  G+E
Sbjct: 233 -ASPYVAPAAAIIEMAESYIRDLRKVLICSTLLEGQYGHKDI----FAGTPLVIGGNGVE 287
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
           ++  L  LN  E+   ++A  E
Sbjct: 288 QVIEL-QLNADEKKKFDEAVAE 308

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTNAVVRGFLG 104
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                D ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  I+N
Sbjct: 64  TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+GGH 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
           G  ++P  S V
Sbjct: 178 GDGMVPATSSV 188

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTNAVVRGFLG 104
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                D ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  I+N
Sbjct: 64  TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+GGH 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
           G  ++P  S V
Sbjct: 178 GDGMVPATSSV 188

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 28/238 (11%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADI------SHMDTN 96
            KV ++GA+G +G   A+L+   P +  L L    + +    G+  DI      +  D N
Sbjct: 1   MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN 60
Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
             V      + ++++    D+VII +GVPRK GM+R DL   NA IV    + IA+ C  
Sbjct: 61  IYVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDT 116
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
            I  +I+NPV+  +   A V  K   ++  ++ G+ T LD +R    +A+  G+   EV 
Sbjct: 117 KIF-VITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 216 VPVVGGHAGVTILPLLSQ-------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
             ++G H G +++PLLS        ++         ID + + ++  G +++  K G+
Sbjct: 172 TRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 143/310 (46%), Gaps = 37/310 (11%)
Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM--DTNAVVRGFLGQ 105
           + +LGA G +G   A+++ +     +L +      P G   D++H   +    +R   G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIR-ISGS 59
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              ED + G DIV++ AG+ RKPGMTR+ L   NA  +  L E I      AIV + +NP
Sbjct: 60  NSYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNP 118
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V++   +   ++KK G +  +R++G + +LD  R   ++++ LG+  + V+  V+G H  
Sbjct: 119 VDAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQ 174
Query: 225 VTI-LPLLSQ---VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF 280
               +P LS    V     ++  EI+ +     N G ++ E +        S  Y  A  
Sbjct: 175 KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR------GYSSNYGPAAG 228
Query: 281 ADACLRGLRGDAGVI---------ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLN 331
               +  ++ D+  I         E  Y    V E+P       +G++GIE I  L PL 
Sbjct: 229 LVLTVEAIKRDSKRIYPYSLYLQGEYGY-NDIVAEVPAV-----IGKSGIERIIEL-PLT 281
Query: 332 EYERAGLEKA 341
           E E+   ++A
Sbjct: 282 EDEKRKFDEA 291

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 25/252 (9%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+ II AG+PR PGM+RDDL   N  IV  + E   +  P + + +++NP++    +A E
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
                  +   R++G+  +LD  R  +F+AE L +  R+V   ++GGH G T++PL    
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 235 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG------L 288
                  P  ID    RI+    E+VE   GAG   + +   +A +A            L
Sbjct: 186 TVGGIPVPQLIDDA--RIE----EIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMTEAIL 239
Query: 289 RGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
           + +  ++ CA        L   F    V+LG  G+EE+  +  L+  E+A L    K  A
Sbjct: 240 KDNKRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQL----KTSA 294
Query: 347 GSIQKGVSFVRK 358
           G +   +  +++
Sbjct: 295 GHVHSNLDDLQR 306

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 134/317 (42%), Gaps = 33/317 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTNAVVRGFLGQ 105
           K+ ++GAAG IG  +A    +  L   L LYD   V   GV  +I H     +   F   
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF--T 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
             +++ALT    ++   G PRK GMTR+DL   NA I   L + I   CP    V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH- 222
           P +    I   V        P ++  +  LD  R  + +A+  G+    V +    GGH 
Sbjct: 128 PAD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHG 183
Query: 223 ---------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
                    A V   PL   +     LT  +   L  R+  GG  +++ +    S+  S 
Sbjct: 184 EQMAVFASTAKVNGTPLTDLIGTD-KLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSP 240
Query: 274 AYAAAKFADACLRG--LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIE--EIYSLGP 329
           +Y + +   A + G   R  AG     YV     E    A +  + + G++  +I  LG 
Sbjct: 241 SYVSIEMIRAAMGGEAFRWPAG----CYVNVPGFEHIMMAMETTITKDGVKHSDINQLG- 295
Query: 330 LNEYERAGLEKAKKELA 346
            NE ERA L+++   LA
Sbjct: 296 -NEAERAALKESYSHLA 311

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 50/326 (15%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG--FL 103
           KVA++GA G +G   A  M +    + L L DV      G   DI+H        G  F+
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH--------GLPFM 59
Query: 104 GQQQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
           GQ  L       +   D++++ AG  RKPG TR DL   N  I K + + I K     ++
Sbjct: 60  GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            ++SNPV+    I   + +K       +++G  T+LD +R    ++E LG+D + V   +
Sbjct: 120 LVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYI 175
Query: 219 VGGHAGVTILPLLSQVK------------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
           +G H G + LPL S               P C+ T  +   + + ++  G  +++ K   
Sbjct: 176 IGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK--- 231
Query: 267 GSATLSMAYAAAKFADACLRG---LRGDAGVIECAY-VASTVTELPFFASKVRLGRAGIE 322
           G+    +A +     +  L+    +R    VI   Y +      LP       +   G++
Sbjct: 232 GATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAISLPSI-----VNSEGVQ 286
Query: 323 EI--YSLGPLNEYE-RAGLEKAKKEL 345
           E+  ++L P  E   R   E+ KK L
Sbjct: 287 EVLQFNLTPEEEEALRFSAEQVKKVL 312

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 28/280 (10%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+   +    +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
              +V+E K   G+     A   A   +A L     D G +  A V        E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
             VRLG  G+EEI     L++YE+  +  A ++L+    K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 28/280 (10%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+   +    +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
              +V+E K   G+     A   A   +A L     D G +  A V        E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGRVLPASVKLEGEFGHEDTAFG 262
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
             VRLG  G+EEI     L++YE+  +  A ++L+    K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 28/280 (10%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+   +    +  E + L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
              +V+E K   G+     A   A   +A L     D G +  A V        E   F 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
             VRLG  G+EEI     L++YE+  +  A ++L+    K
Sbjct: 264 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P+KPG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K+  +   R++G  T LD  R    +AE++ +D R V   ++G H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
                     VK    +   ++  + + +++   E+++ K   G+    +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 249
Query: 284 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 333
            L            + G  G+ +            +  +   + R GI+ I  + PL ++
Sbjct: 250 ILNDENAVLPLSVYMDGQYGLNDI-----------YIGTPAVINRNGIQNILEI-PLTDH 297
Query: 334 ERAGLEKAKKEL 345
           E   ++K+  +L
Sbjct: 298 EEESMQKSASQL 309

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P+KPG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K+  +   R++G  T LD  R    +A+++ +D R V   ++G H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
                     VK    +   ++  + + ++N   E+++ K   G+    +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GATFYGIATALARISKA 249
Query: 284 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 333
            L            + G  G+ +            +  +   + R GI+ I  + PL ++
Sbjct: 250 ILNDENAVLPLSVYMDGQYGLNDI-----------YIGTPAVINRNGIQNILEI-PLTDH 297
Query: 334 ERAGLEKAKKEL 345
           E   ++K+  +L
Sbjct: 298 EEESMQKSASQL 309

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P++PG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K+  +   R++G  T LD  R    +AE++ +D R V   ++G H G T  P+ S  
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 191
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
                     VK    +   ++  + + +++   E+++ K   G+    +A A A+ + A
Sbjct: 192 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 248
Query: 284 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 333
            L            + G  G+ +            +  +   + R GI+ I  + PL ++
Sbjct: 249 ILNDENAVLPLSVYMDGQYGINDL-----------YIGTPAVINRNGIQNILEI-PLTDH 296
Query: 334 ERAGLEKAKKEL 345
           E   ++K+  +L
Sbjct: 297 EEESMQKSASQL 308

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 122/280 (43%), Gaps = 28/280 (10%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V    +    +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
              +V+E K   G+     A   A   +A L     D G +  A V        E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
             V LG  G+EEI     L++YE+  +  A ++L+    K
Sbjct: 263 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 122/280 (43%), Gaps = 28/280 (10%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V    +    +  E + L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
              +V+E K   G+     A   A   +A L     D G +  A V        E   F 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
             V LG  G+EEI     L++YE+  +  A ++L+    K
Sbjct: 264 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 29/328 (8%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
           +P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  
Sbjct: 17  TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           +V G     +  +      +VII AG  ++ G +R +L   N  I K +   + K  P  
Sbjct: 76  IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
            + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P     
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAG 267
            V+G H G + +P+ S +  +  SL     D  TD+ +    EV         E     G
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKG 245
Query: 268 SATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSL 327
             + ++  + A  A++ ++ LR    V         + +  F +    LG+ GI ++  +
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV 305
Query: 328 GPLNEYERAGLEKAKKELAGSIQKGVSF 355
             L   E A L+K+   L G IQK + F
Sbjct: 306 -TLTSEEEARLKKSADTLWG-IQKELQF 331

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 29/328 (8%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
           +P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  
Sbjct: 17  TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           +V G     +  +      +VII AG  ++ G +R +L   N  I K +   + K  P  
Sbjct: 76  IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
            + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P     
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAG 267
            V+G H G + +P+ S +  +  SL     D  TD+ +    EV         E     G
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKG 245
Query: 268 SATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSL 327
             + ++  + A  A++ ++ LR    V         + +  F +    LG+ GI ++  +
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV 305
Query: 328 GPLNEYERAGLEKAKKELAGSIQKGVSF 355
             L   E A L+K+   L G IQK + F
Sbjct: 306 -TLTSEEEARLKKSADTLWG-IQKELQF 331

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 45/323 (13%)
Query: 46  GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVR 100
           G KV ++G  G +G   A  +    +V  L + D+ +T  V  D+  +      +   VR
Sbjct: 6   GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVR 63
Query: 101 GFLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
              G+     DA    D+V+I AG  +KPG TR DL + N  I K++   +       I 
Sbjct: 64  VKAGEYSDCHDA----DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIF 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            + +NPV+    I A    K      +R++G  T+LD  R    ++E   + PR VD  +
Sbjct: 120 LVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQI 175
Query: 219 VGGHAGVTILPLLSQV----KPSCSLTP------TEIDYLTDRIQNGGTEVVEAKTGAGS 268
           +G H G T LP+ S      +P  +L         +I+ +  + ++   ++++AK   G+
Sbjct: 176 IGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GA 231
Query: 269 ATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIE 322
               +A   A+  +A  R         +     S + E  +    V +G      R GI 
Sbjct: 232 TYYGVAMGLARITEAIFRNE-------DAVLTVSALLEGEYEEEDVYIGVPAVINRNGIR 284
Query: 323 EIYSLGPLNEYERAGLEKAKKEL 345
            +  + PLN+ E++    + K L
Sbjct: 285 NVVEI-PLNDEEQSKFAHSAKTL 306

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 45/323 (13%)
Query: 46  GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVR 100
           G KV ++G  G +G   A  +    +V  L + D+ +T  V  D+  +      +   VR
Sbjct: 6   GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVR 63
Query: 101 GFLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
              G+     DA    D+V+I AG  +KPG TR DL + N  I K++   +       I 
Sbjct: 64  VKAGEYSDCHDA----DLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIF 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            + +NPV+    I A    K      +R++G  T+LD  R    ++E   + PR VD  +
Sbjct: 120 LVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQI 175
Query: 219 VGGHAGVTILPLLSQV----KPSCSLTP------TEIDYLTDRIQNGGTEVVEAKTGAGS 268
           +G H G T LP+ S      +P  +L         +I+ +  + ++   ++++AK   G+
Sbjct: 176 IGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GA 231
Query: 269 ATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIE 322
               +A   A+  +A  R         +     S + E  +    V +G      R GI 
Sbjct: 232 TYYGVAMGLARITEAIFRNE-------DAVLTVSALLEGEYEEEDVYIGVPAVINRNGIR 284
Query: 323 EIYSLGPLNEYERAGLEKAKKEL 345
            +  + PLN+ E++    + K L
Sbjct: 285 NVVEI-PLNDEEQSKFAHSAKTL 306

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
                   PLL   +    +L+P +   + + ++     ++E K       GAG A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
           A
Sbjct: 241 A 241

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
                   PLL   +    +L+P +   + + ++     ++E K       GAG A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
           A
Sbjct: 241 A 241

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 142/330 (43%), Gaps = 35/330 (10%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 19  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 77
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V       +         +VII AG  ++ G +R +L   N  I K +   + K  P+  
Sbjct: 78  VSS-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 133 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQVKPS----CSLTP---TEIDY-----LTDRIQNGGTEVVEAKTG 265
           V+G H G + +P+ S V  +     SL P   T+ D      +  ++ +   EV++ K  
Sbjct: 189 VLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK-- 245
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
            G  + ++  + A  A++ ++ LR    +         + E  F +    LG+ GI ++ 
Sbjct: 246 -GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVV 304
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
            +  L   E A L+K+   L G IQK + F
Sbjct: 305 KV-TLTPDEEARLKKSADTLWG-IQKELQF 332

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
                   PLL   +    +L+P +   + + ++     ++E K       GAG A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
           A
Sbjct: 241 A 241

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 142/330 (43%), Gaps = 35/330 (10%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 18  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 76
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V       +         +VII AG  ++ G +R +L   N  I K +   + K  P+  
Sbjct: 77  VSS-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 132 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 187
Query: 218 VVGGHAGVTILPLLSQVKPS----CSLTP---TEIDY-----LTDRIQNGGTEVVEAKTG 265
           V+G H G + +P+ S V  +     SL P   T+ D      +  ++ +   EV++ K  
Sbjct: 188 VLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK-- 244
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
            G  + ++  + A  A++ ++ LR    +         + E  F +    LG+ GI ++ 
Sbjct: 245 -GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVV 303
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
            +  L   E A L+K+   L G IQK + F
Sbjct: 304 KV-TLTPDEEARLKKSADTLWG-IQKELQF 331

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 126/311 (40%), Gaps = 44/311 (14%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A   V   +
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              +  +DA    DIV I AG  +KPG TR +L   N  I K +   +       I  + 
Sbjct: 66  GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G 
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           H G T LP+ S            V+ + +    E+D + D ++N    ++E K   G+  
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATY 233
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEI 324
             +A + A+   A L                ST  +  + A  V +G      R GI  I
Sbjct: 234 YGVAMSLARITKAILHNEN-------SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGI 286
Query: 325 YSLGPLNEYER 335
             L  LNE E+
Sbjct: 287 TELN-LNEKEK 296

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 140/330 (42%), Gaps = 35/330 (10%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +
Sbjct: 19  PHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKI 77
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V G     +  +      +V+I AG  ++ G +R +L   N  I K +   I K  P   
Sbjct: 78  VSG-----KDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 133 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTG 265
           ++G H G + +P+ S V  +  SL     +  TD            + +   EV++ K  
Sbjct: 189 ILGEH-GDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLK-- 245
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
            G  + ++  + A  A++ ++ LR    +         + E  F +    LG+ GI ++ 
Sbjct: 246 -GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVV 304
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
            +  L   E A L+K+   L G IQK + F
Sbjct: 305 KV-TLTPEEEAHLKKSADTLWG-IQKELQF 332

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 127/311 (40%), Gaps = 44/311 (14%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A   V   +
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              +  +DA    DIV I AG  +KPG TR +L   N  I K +   +       I  + 
Sbjct: 66  GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G 
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           H G T LP+ S            V+ + +    E+D + D ++N    ++E K   G+  
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATY 233
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEI 324
             +A + A+   A L        V       ST  +  + A  V +G      R GI  I
Sbjct: 234 YGVAMSLARITKAILHNENSILTV-------STYLDGQYGADDVYIGVPAVVNRGGIAGI 286
Query: 325 YSLGPLNEYER 335
             L  LNE E+
Sbjct: 287 TELN-LNEKEK 296

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V   +    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
                   PLL   +    +L+P +   + + ++     ++E K       GAG A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
           A
Sbjct: 241 A 241

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 23/252 (9%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +VII AG     G TR DL   N  I+K +  G+ +  P   + +++NPV+    I   V
Sbjct: 90  LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
             K+  +   R++G    LD  R    + E LG++P      V+G H G + +P+ S V 
Sbjct: 146 VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGVN 204
Query: 236 PS----CSLTPT--------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
            +     SL P             +  ++  GG EV++ K   G  + ++  +    A +
Sbjct: 205 VAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYTSWAIGLSVTDLARS 261
Query: 284 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 343
            L+ L+    V         + E  F +    LG +GI +   +    E E  GL K   
Sbjct: 262 ILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEE--GLLKKSA 319
Query: 344 ELAGSIQKGVSF 355
           +   ++QK +  
Sbjct: 320 DTLWNMQKNLEL 331

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 39/223 (17%)
Query: 26  IEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 85
           +E ++ G G M           KVAV GAAG IG  L  L+    L+           P 
Sbjct: 12  LEAQTQGPGSMSA--------VKVAVTGAAGQIGYALVPLIARGALLG----------PT 53
Query: 86  VTADISHMDTNAVVRGFLG-QQQLED-----------------ALTGMDIVIIPAGVPRK 127
              ++  +D    ++   G + +LED                 A  G+ I I+    PRK
Sbjct: 54  TPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRK 113
Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPK 186
            GM R DL  +NA I K   E IA        V ++ NP N+   I  +  +  G  +P+
Sbjct: 114 AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQ--GKLNPR 171
Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 229
            +  +T LD  RA + +A   G+   +V   ++ G+   T +P
Sbjct: 172 HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVP 214

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 35/330 (10%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 18  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKI 76
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V G     +         +VII AG  ++ G +R +L   N  I K +   + K  P   
Sbjct: 77  VSG-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+        
Sbjct: 132 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGW 187
Query: 218 VVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTG 265
           ++G H G + +P+ S +  +  SL     +  TD           ++ +   EV++ K  
Sbjct: 188 ILGEH-GDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLK-- 244
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
            G  T ++  + A  A++ ++ LR    +         + E  F +    LG+ GI ++ 
Sbjct: 245 -GYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVV 303
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
            +  L   E A L+K+   L G IQK + F
Sbjct: 304 KV-TLTSEEEAHLKKSADTLWG-IQKELQF 331

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 21/251 (8%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +V++ AG  ++ G +R +L   N  I K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVTI 227
             K+      R++G  T LD  R    + E LG+ P      V+G H        +GV +
Sbjct: 147 AWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNV 206
Query: 228 LPLLSQ-VKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
             +  Q + P       + D+  +   + +   EV++ K   G  + ++  +AA    + 
Sbjct: 207 AGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK---GYTSWAIGMSAADLCQSI 263
Query: 285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
           L+ LR    V         V E  F +    LG +G+ ++  +  L   E   L K+ + 
Sbjct: 264 LKNLRKCHPVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHM-TLKSDEEKQLVKSAET 322
Query: 345 LAGSIQKGVSF 355
           L G +QK ++ 
Sbjct: 323 LWG-VQKDLTL 332

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 28/260 (10%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRG 101
           P  +  VL   G +G   A  M    +     + DVV   T G   D+       A  + 
Sbjct: 3   PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI 62
Query: 102 FLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
           + G+    +DA    D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  
Sbjct: 63  YSGEYSDCKDA----DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           + +NPV+    I      K   +  +R++G  T LD  R    + +   +DPR VD  ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174
Query: 220 GGH----------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TG 265
           G H          A +   P +  V     ++  ++  L D ++N   +++  K     G
Sbjct: 175 GEHGDSEFAAYSTATIGTRP-VRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYG 233
Query: 266 AGSATLSMAYAAAKFADACL 285
            G+A + ++ A  +  +A L
Sbjct: 234 IGTALMRISKAILRDENAVL 253

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 23/252 (9%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +V++ AG  ++ G +R +L   N  I K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 90  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
             K+  +   R++G  T LD  R    + E L L P      +VG H G + +P+ S V 
Sbjct: 146 AWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGVN 204
Query: 236 PS----CSLTP---TEID-----YLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
            +      L P   TE D      +   + +G  EV++ K   G  + ++  + A   ++
Sbjct: 205 VAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK---GYTSWAIGMSVADLVES 261
Query: 284 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 343
            ++ +     V         V +  F +    LG +G+ ++  +  L   E   L+K+ +
Sbjct: 262 IIKNMHKVHPVSTLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHM-TLKAEEEKQLQKSAE 320
Query: 344 ELAGSIQKGVSF 355
            L G +QK ++ 
Sbjct: 321 TLWG-VQKELTL 331

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +++NP++    
Sbjct: 67  LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTY 126
Query: 172 IAA--------EVFKKVGTYDPKRL 188
           I          EVF      D +RL
Sbjct: 127 IMWKESGKPRNEVFGMGNQLDSQRL 151

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG +R +L      I+K +   + K  P AI  LI+NPV+    IA  
Sbjct: 77  DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATH 132
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
           V +K+      ++ G  T LD  R    +A+  G++ + V   + G H G + +PL    
Sbjct: 133 VAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESA 191
Query: 235 K----PSCSLTP 242
                P    TP
Sbjct: 192 TIGGVPMSDWTP 203

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NPV+    I   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K      +R++G  T+LD  R    + E   + P+ V   ++G H G T LP+ SQ 
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 234 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
              V P   L  +       +++ +   +++   +++E K   G+    +A   A+   A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 284 CLRGLRGDAGVIECAYVASTVTELP-FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 342
            L     +A +   AY+     E   +      + R GI E+  +  LN+ E+     + 
Sbjct: 248 ILHN--ENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSA 304
Query: 343 KELAGSIQKGVS 354
             L   + +  +
Sbjct: 305 ATLKSVLARAFT 316

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NPV+    I   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K      +R++G  T+LD  R    + E   + P+ V   ++G H G T LP+ SQ 
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 234 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
              V P   L  +       +++ +   +++   +++E K   G+    +A   A+   A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 284 CLRGLRGDAGVIECAYVASTVTELP-FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 342
            L     +A +   AY+     E   +      + R GI E+  +  LN+ E+     + 
Sbjct: 248 ILHN--ENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSA 304
Query: 343 KELAGSIQKGVS 354
             L   + +  +
Sbjct: 305 ATLKSVLARAFT 316

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 22/213 (10%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+   K
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
            + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
              V G+   T+ P L       +P+  L   E
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
           +VAV GAAG IG  L        ML K  P+  +L L ++         +     +    
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
              G +  +D   A    D  ++    PRK GM R DL  +N  I       +A+   K 
Sbjct: 64  LLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
           + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +  
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
             V G+   T+ P L       +P+  L   E
Sbjct: 181 MTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 31/201 (15%)
Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
           G  +L DA     +VI+ AG  +KPG +R DL   NA I + L   I +  P A++ + S
Sbjct: 61  GHSELADA----QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116
Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 222
           NPV+    +A ++         + ++G  T+LD  R    +A+  G+D       V+G H
Sbjct: 117 NPVDLLTDLATQLAPG------QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH 170
Query: 223 AGVTILPLLS--------------QVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
               +L   S              Q  P       +ID  T   +N    ++E K    +
Sbjct: 171 GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGT---RNAAASIIEGKR---A 224
Query: 269 ATLSMAYAAAKFADACLRGLR 289
               +  A A+  +A LR  R
Sbjct: 225 TYYGIGAALARITEAVLRDRR 245

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 18/211 (8%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA--V 98
           +VAV GAAG IG  L        ML K  P++  L L    +   +   +  ++  A  +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           + G       + A    D  ++    PRK GM R DL  +N  I       +A+   K +
Sbjct: 65  LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 159 -VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
            V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +   
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 218 VVGGHAGVTILPLLSQV----KPSCSLTPTE 244
            V G+   T+ P L       +P+  L   E
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 22/213 (10%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+   K
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
            + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
              V G+    + P L       +P+  L   E
Sbjct: 180 RMTVWGNHSSIMFPDLFHAEVDGRPALELVDME 212

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 53/331 (16%)
Query: 53  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
           G+  G  QP+ + L+ I P++ VL         GV  ++       +++  +   + E A
Sbjct: 27  GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 77
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
              +D+ I+   +PR+ GM R DL   N  I K  C+G A  K   K++ V ++ NP N+
Sbjct: 78  FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 135
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
               A+   K   +   +    +T LD  RA   +A  LG+   +V   ++ G+   T  
Sbjct: 136 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 192
Query: 229 PLLSQVKPSCSLTPTEI--------------DYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
           P ++  K    L   E+              +++T  +Q  G  V++A+       LS A
Sbjct: 193 PDVNHAK--VKLQAKEVGVYEAVKDDSWLKGEFIT-TVQQRGAAVIKAR------KLSSA 243
Query: 275 YAAAKFADACLRGLRGDAGVIECAYVASTVTE------LP---FFASKVRLGRAGIEEIY 325
            +AAK     +R +    G  E  +V+  +        +P    ++  V +     + + 
Sbjct: 244 MSAAKAICDHVRDIW--FGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVE 301
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSFV 356
            L P+N++ R  ++   KELA   +    F+
Sbjct: 302 GL-PINDFSREKMDLTAKELAEEKETAFEFL 331

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 53/331 (16%)
Query: 53  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
           G+  G  QP+ + L+ I P++ VL         GV  ++       +++  +   + E A
Sbjct: 26  GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 76
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
              +D+ I+   +PR+ GM R DL   N  I K  C+G A  K   K++ V ++ NP N+
Sbjct: 77  FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 134
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
               A+   K   +   +    +T LD  RA   +A  LG+   +V   ++ G+   T  
Sbjct: 135 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 191
Query: 229 PLLSQVKPSCSLTPTEI--------------DYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
           P ++  K    L   E+              +++T  +Q  G  V++A+       LS A
Sbjct: 192 PDVNHAK--VKLQAKEVGVYEAVKDDSWLKGEFIT-TVQQRGAAVIKAR------KLSSA 242
Query: 275 YAAAKFADACLRGLRGDAGVIECAYVASTVTE------LP---FFASKVRLGRAGIEEIY 325
            +AAK     +R +    G  E  +V+  +        +P    ++  V +     + + 
Sbjct: 243 MSAAKAICDHVRDIW--FGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVE 300
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSFV 356
            L P+N++ R  ++   KELA   +    F+
Sbjct: 301 GL-PINDFSREKMDLTAKELAEEKETAFEFL 330

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    +AE LG+ P      ++G H   ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    +AE LG+ P      ++G H   ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 130/325 (40%), Gaps = 34/325 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
           K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 23  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 81
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +      G  +V+I AG  ++ G +R +L   N  I K +   I K  P  I+ +
Sbjct: 82  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 136
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    +A     K+      R++G    LD  R    + E LG+        V+G
Sbjct: 137 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 192
Query: 221 GH--------AGVTILPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSAT 270
            H        +G+ +  +  ++ P       + D+  L   + +   EV++ K   G  +
Sbjct: 193 EHGDSVPSVWSGMNVASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTS 247
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 330
            ++  + A  A+  ++ L     V         + +  F +    L   GI  I  +  L
Sbjct: 248 WAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KL 306
Query: 331 NEYERAGLEKAKKELAGSIQKGVSF 355
              E   L+K+   L   IQK + F
Sbjct: 307 KPNEEQQLQKSATTL-WDIQKDLKF 330

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 130/325 (40%), Gaps = 34/325 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
           K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 80
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +      G  +V+I AG  ++ G +R +L   N  I K +   I K  P  I+ +
Sbjct: 81  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 135
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    +A     K+      R++G    LD  R    + E LG+        V+G
Sbjct: 136 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 191
Query: 221 GH--------AGVTILPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSAT 270
            H        +G+ +  +  ++ P       + D+  L   + +   EV++ K   G  +
Sbjct: 192 EHGDSVPSVWSGMNVASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTS 246
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 330
            ++  + A  A+  ++ L     V         + +  F +    L   GI  I  +  L
Sbjct: 247 WAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KL 305
Query: 331 NEYERAGLEKAKKELAGSIQKGVSF 355
              E   L+K+   L   IQK + F
Sbjct: 306 KPNEEQQLQKSATTL-WDIQKDLKF 329

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 92  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD----ILTYV 147
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    + E LG+ P      ++G H   ++
Sbjct: 148 AWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSV 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	0.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-176
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-170
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	8e-51
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	3e-44
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	3e-43
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	1e-42
3tl2_A	315	Malate dehydrogenase; center for structural genomi	1e-42
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-42
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	5e-42
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	8e-42
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	1e-41
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	2e-41
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	1e-40
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	2e-40
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	1e-39
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	6e-39
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	8e-39
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	1e-38
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	2e-38
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	3e-38
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	3e-38
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	2e-37
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	3e-37
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	3e-37
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	6e-37
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	1e-36
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	3e-36
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	1e-35
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	2e-35
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	4e-35
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	1e-34
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	1e-34
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	1e-33
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	2e-32
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	3e-32
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	6e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	1e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	3e-06
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  509 bits (1312), Expect = 0.0
 Identities = 290/320 (90%), Positives = 303/320 (94%)

Query: 39  RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
           RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 278
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA 
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240

Query: 279 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 338
           KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300

Query: 339 EKAKKELAGSIQKGVSFVRK 358
           EKAKKELAGSI+KGVSF+R 
Sbjct: 301 EKAKKELAGSIEKGVSFIRS 320

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  490 bits (1265), Expect = e-176
 Identities = 177/310 (57%), Positives = 230/310 (74%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
           +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241

Query: 288 LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG 347
           + G  GV+EC++V S  T+ P+F++ + LG+ GIE+   +G ++ +E   + +A  EL  
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301

Query: 348 SIQKGVSFVR 357
           SI+KG  FV+
Sbjct: 302 SIKKGEEFVK 311

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  475 bits (1225), Expect = e-170
 Identities = 176/313 (56%), Positives = 216/313 (69%), Gaps = 4/313 (1%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 285
           TILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 286 RGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL 345
           R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299

Query: 346 AGSIQKGVSFVRK 358
              I  G  FV K
Sbjct: 300 KKDIALGEEFVNK 312

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  172 bits (437), Expect = 8e-51
 Identities = 78/317 (24%), Positives = 125/317 (39%), Gaps = 25/317 (7%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGFLGQ 105
           K+ ++GAAG IG  +A    +  L   L LYD       GV  +I H     +       
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGL--NLTFT 67

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
             +++ALT    ++   G PRK GMTR+DL   NA I   L + I   CP    V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223
           P + T  +            P ++  +  LD  R  + +A+  G+    V      GGH 
Sbjct: 128 PADITGLVTL----IYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 224 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           G  +             L+ +  +  LT  +   L  R+  GG  +++ +    S+  S 
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG--RSSFQSP 240

Query: 274 AYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 333
           +Y + +   A + G           YV     E    A +  + + G++        NE 
Sbjct: 241 SYVSIEMIRAAMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNEA 298

Query: 334 ERAGLEKAKKELAGSIQ 350
           ERA L+++   LA    
Sbjct: 299 ERAALKESYSHLAKLRD 315

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  153 bits (389), Expect = 3e-44
 Identities = 80/332 (24%), Positives = 141/332 (42%), Gaps = 52/332 (15%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHM------DTNA 97
           KV ++GA+G +G   A+L+   P +  L L    +      G+  DI         D N 
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
            V      + ++++    D+VII +GVPRK GM+R DL   NA IV    + IA+ C   
Sbjct: 62  YVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK 117

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
           I  +I+NPV+    +          ++  ++ G+ T LD +R    +A+  G+   EV  
Sbjct: 118 IF-VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT 172

Query: 217 PVVGGHAGVTILPLLSQVKPS-------CSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269
            ++G H G +++PLLS                   ID + + ++  G +++  K   G +
Sbjct: 173 RIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGS 228

Query: 270 TLSMAYAAAKFADACLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRA 319
               A A        +            + G+   I    +      +P     V++GR 
Sbjct: 229 EFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIG-----VP-----VKIGRD 278

Query: 320 GIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
           GIEE+ S+  L++ E     K+ + +    ++
Sbjct: 279 GIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 309

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  151 bits (383), Expect = 3e-43
 Identities = 80/321 (24%), Positives = 134/321 (41%), Gaps = 38/321 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHM---DTNAVVR 100
           KV+V+GAAG +G      + +  +   +   D+ +    T    AD +H    D+N  V 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV- 60

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
               Q   ED   G D+V+I AG+PR+PG TR DL   NA I++ +   + +     I  
Sbjct: 61  ---RQGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
             SNPV+    +      + G    ++++G    LD  R    ++E      + V+  ++
Sbjct: 117 TTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL 172

Query: 220 GGHAGVTILPLLSQVKPSC---SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
           G H G   +P+ S+V         +  E + L   +Q    +V+E K   G+     A  
Sbjct: 173 GEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARG 228

Query: 277 AAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPL 330
            A   +A L        V+  +      +          F   V LG  G+EEI     L
Sbjct: 229 VAHMVEAILHDTGE---VLPASVKLEGEFGHEDT----AFGVPVSLGSNGVEEIVEW-DL 280

Query: 331 NEYERAGLEKAKKELAGSIQK 351
           ++YE+  +  A ++L+    K
Sbjct: 281 DDYEQDLMADAAEKLSDQYDK 301

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  149 bits (379), Expect = 1e-42
 Identities = 83/322 (25%), Positives = 147/322 (45%), Gaps = 38/322 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KV V+GA G +G  +A  +    +   + + D+ +    G   D+         +  V G
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                  ED+    D+ II AG+PR PGM+RDDL   N  IV  + E   +  P + + +
Sbjct: 61  TNDYGPTEDS----DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++    +   V  +   +   R++G+  +LD  R  +F+AE L +  R+V   ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G T++PL         P   L     I+ + +R +  G E+V+      SA  +   
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGA 229

Query: 276 AAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGP 329
           AAA+  +A L+  +    ++ CA      Y    +    F    V+LG  G+EE+  +  
Sbjct: 230 AAAEMTEAILKDNK---RILPCAAYCDGEYGLDDL----FIGVPVKLGAGGVEEVIEV-D 281

Query: 330 LNEYERAGLEKAKKELAGSIQK 351
           L+  E+A L+ +   +  ++  
Sbjct: 282 LDADEKAQLKTSAGHVHSNLDD 303

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  149 bits (379), Expect = 1e-42
 Identities = 91/324 (28%), Positives = 151/324 (46%), Gaps = 40/324 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHM----DTNAVV 99
           KV+V+GA G  G   A L+    L  V+ L D+      T     D+         +A +
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPVQGFDANI 67

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
            G        D+    D+V+I AG+ RKPGM+RDDL   N+ I+K++   IAK  P AI+
Sbjct: 68  IGTSDYADTADS----DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAII 123

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            +++NPV+           K   +  +R++G   +LD  R  TF+A+ L L  +++   V
Sbjct: 124 VVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFV 179

Query: 219 VGGHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           +GGH G  ++PL+        P  +L     ++ + +R + GG E+V    G GSA  + 
Sbjct: 180 LGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAP 237

Query: 274 AYAAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSL 327
           A +  +  +A L+  R    V+         Y  S +    +    V LG  GIE+I  L
Sbjct: 238 AASLVEMTEAILKDQR---RVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIEL 290

Query: 328 GPLNEYERAGLEKAKKELAGSIQK 351
             L   E+  L+++ + +   ++ 
Sbjct: 291 -ELLADEKEALDRSVESVRNVMKV 313

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  149 bits (378), Expect = 2e-42
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 37/322 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
           K+ V+GA G +G   A  +    L   L L DVV     G   D+        V  F   
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES---GPVGLFDTK 57

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ +
Sbjct: 58  VTGSNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNP++    I   V         +R++G+  +LD  R  +F+A  LG+  ++++  V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G  ++P++        P   L P E ID L +R +NGG E+VE     GSA  + A 
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQGSAFYAPAS 230

Query: 276 AAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGP 329
           +  +  ++ +   +    V+ CA      Y         F    V+LGR G+E+IY +  
Sbjct: 231 SVVEMVESIVLDRKR---VLPCAVGLEGQYGIDKT----FVGVPVKLGRNGVEQIYEI-N 282

Query: 330 LNEYERAGLEKAKKELAGSIQK 351
           L++ +   L+K+ K +  + + 
Sbjct: 283 LDQADLDLLQKSAKIVDENCKM 304

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  148 bits (375), Expect = 5e-42
 Identities = 84/322 (26%), Positives = 147/322 (45%), Gaps = 38/322 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K++++GA G +G   A  +    L  ++ L D+V     G   D+         +  V G
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEGFDVRVTG 61

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                   ++    D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +
Sbjct: 62  TNNYADTANS----DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 117

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++        +  +V  +  +R++G   +LD  R  TF+A   G+   +V   ++G
Sbjct: 118 VNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMG 173

Query: 221 GHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G  ++PL         P      P  +  + +R + GG E+V      GSA  + A 
Sbjct: 174 GH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAA 231

Query: 276 AAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGP 329
           A A+  +A L+  +    V+  A      Y  + +    +F   V LG  G+E+I  L P
Sbjct: 232 ATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDI----YFGVPVILGAGGVEKILEL-P 283

Query: 330 LNEYERAGLEKAKKELAGSIQK 351
           LNE E A L  + K +  ++  
Sbjct: 284 LNEEEMALLNASAKAVRATLDT 305

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  147 bits (374), Expect = 8e-42
 Identities = 86/327 (26%), Positives = 149/327 (45%), Gaps = 43/327 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H      + + V G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 +  +    D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  
Sbjct: 64  TDDYADISGS----DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+G
Sbjct: 120 ITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIG 175

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G  ++P           LS       +T  +ID +    +    EV +     G+A 
Sbjct: 176 GH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAY 233

Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEI 324
            + A AA K A+A L+  +    V+ C+      Y    +    +      +G+ G+E+I
Sbjct: 234 FAPAAAAVKMAEAYLKDKK---AVVPCSAFCSNHYGVKGI----YMGVPTIIGKNGVEDI 286

Query: 325 YSLGPLNEYERAGLEKAKKELAGSIQK 351
             L  L   E+  L ++  E+    + 
Sbjct: 287 LEL-DLTPLEQKLLGESINEVNTISKV 312

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  147 bits (373), Expect = 1e-41
 Identities = 94/327 (28%), Positives = 160/327 (48%), Gaps = 43/327 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K++++GA G IG  +A+L+    L  V  ++D++     G   D++H      + A + G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + L+++    D+VII AGVPRKP MTR DL  +NA IV ++ E + K CP A V  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++         FK+       ++ G+  +LD  R    ++  LG+ P +V   VVG
Sbjct: 130 ITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG 185

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G  ++PL          LS       +T ++I+ +  +   GG E+VE     GSA 
Sbjct: 186 GH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAF 243

Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEI 324
            + A +A   A A L+  +    V+ C+      Y  + +    F    V +G+ GIE++
Sbjct: 244 YAPAASAVAMAQAYLKDSK---SVLVCSTYLTGQYNVNNL----FVGVPVVIGKNGIEDV 296

Query: 325 YSLGPLNEYERAGLEKAKKELAGSIQK 351
             +  L++ E++   K+ + +   +Q 
Sbjct: 297 VIV-NLSDDEKSLFSKSVESIQNLVQD 322

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  146 bits (370), Expect = 2e-41
 Identities = 73/328 (22%), Positives = 135/328 (41%), Gaps = 53/328 (16%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRGF 102
           + +LGA G +G   A+++ +     +L L         G   D++H       +  + G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAHAAAELGVDIRISGS 59

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              + +  +    DIV++ AG+ RKPGMTR+ L   NA  +  L E I      AIV + 
Sbjct: 60  NSYEDMRGS----DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+        V  K   +  +R++G   +LD  R   ++++ LG+  + V+  V+G 
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171

Query: 222 HAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGA-----GSATL 271
           H G  + P+              ++  EI+ +     N G ++ E +  +      +  +
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLV 230

Query: 272 SMAYAAAKFAD--------ACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEE 323
               A  +  D          L+G  G   +            +P       +G++GIE 
Sbjct: 231 LTVEAIKR--DSKRIYPYSLYLQGEYGYNDI----VAE-----VP-----AVIGKSGIER 274

Query: 324 IYSLGPLNEYERAGLEKAKKELAGSIQK 351
           I  L PL E E+   ++A + +   ++ 
Sbjct: 275 IIEL-PLTEDEKRKFDEAVQAVKKLVET 301

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  144 bits (366), Expect = 1e-40
 Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 43/327 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+A++G+ G IG  LA L  +  L  V+ L+D+      G   DI+        +A   G
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 +E A    D+VI+ AGVPRKPGM+RDDL  IN  +++ +  GI K  P+A V  
Sbjct: 67  ANDYAAIEGA----DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVIC 122

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++          +K       +++G+  +LD  R   F++E   +   +V V V+G
Sbjct: 123 ITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLG 178

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G +++PL          L  +      +  ++D +  R ++GG E+V      GSA 
Sbjct: 179 GH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAF 236

Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEI 324
            + A +A + A++ L+  +    V+  A      Y    +    +      +G  G+E I
Sbjct: 237 YAPAASAIQMAESYLKDKK---RVLPVAAQLSGQYGVKDM----YVGVPTVIGANGVERI 289

Query: 325 YSLGPLNEYERAGLEKAKKELAGSIQK 351
             +  L++ E+A  +K+   +AG  + 
Sbjct: 290 IEI-DLDKDEKAQFDKSVASVAGLCEA 315

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  144 bits (365), Expect = 2e-40
 Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 52/332 (15%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+ ++GA G IG  LA L  I  L  V+ L+D+      G   D+         +  VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQTCPIEGVDFKVRG 64

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + LE++    D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CP A V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVIC 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    I   + +K       +++G+  +LD  R  TF+A+ L +  ++V   V+G
Sbjct: 121 ITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMG 176

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G T++PL          L Q+     L    +D +  R ++GG E+V      GSA 
Sbjct: 177 GH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAY 234

Query: 271 LSMAYAAAKFADACLRGLR-----------GDAGVIECAYVASTVTELPFFASKVRLGRA 319
            + A A  + A++ L+  +           G  G+ E  +V      +P       +   
Sbjct: 235 YAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVG-----VP-----TEISAN 284

Query: 320 GIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
           G+  I     +++ ER  L+ +   +    + 
Sbjct: 285 GVRPIEV--EISDKEREQLQVSINAIKDLNKA 314

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  142 bits (360), Expect = 1e-39
 Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 47/332 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+     V      
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHV---TSVVDTNVS 65

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
             + +++NP++       +V  +        + G+  MLD  R   +VA+ L + PR+V 
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 216 VPVVGGHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             V+G H G  ++PL+  +               +T  +++ + +  +  G E+V    G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239

Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRA 319
            GSA  + A +A   A + L   +    VI C+      Y    +    F      +G A
Sbjct: 240 QGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDM----FIGLPAVIGGA 292

Query: 320 GIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
           GIE +  L  LNE E+   +K+  ++    + 
Sbjct: 293 GIERVIEL-ELNEEEKKQFQKSVDDVMALNKA 323

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  139 bits (354), Expect = 6e-39
 Identities = 85/332 (25%), Positives = 151/332 (45%), Gaps = 50/332 (15%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+ ++G+ G IG  +A L+    L  V+ L+D+V     G   D SH      +N  V G
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
                 L  A    D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP 
Sbjct: 64  SNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119

Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175

Query: 216 VPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H G  ++ L          L +   +  ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH-- 232

Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRA 319
             S  ++ A A  + A++ L+ L+    V+ C+      Y  S +    F  + V LG  
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDI----FGGTPVVLGAN 284

Query: 320 GIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
           G+E++  L  LN  E+A  ++A  E       
Sbjct: 285 GVEQVIEL-QLNSEEKAKFDEAIAETKRMKAL 315

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  139 bits (353), Expect = 8e-39
 Identities = 64/331 (19%), Positives = 125/331 (37%), Gaps = 46/331 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           +V V+GA G +G      +    +   + L D       G   D +H    A     +  
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              +D     D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NP
Sbjct: 67  GDYDD-CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP 125

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
           V+    I      K      +R++G  T+LD  R    + E   + P+ V   ++G H  
Sbjct: 126 VD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD 181

Query: 223 ------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
                 +   I  +P+   V+        +++ +   +++   +++E K   G+    +A
Sbjct: 182 TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIA 238

Query: 275 YAAAKFADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEE 323
              A+   A L        ++      S   +           +P       + R GI E
Sbjct: 239 MGLARVTRAILHNEN---AILTV----SAYLDGLYGERDVYIGVP-----AVINRNGIRE 286

Query: 324 IYSLGPLNEYERAGLEKAKKELAGSIQKGVS 354
           +  +  LN+ E+     +   L   + +  +
Sbjct: 287 VIEI-ELNDDEKNRFHHSAATLKSVLARAFT 316

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  138 bits (351), Expect = 1e-38
 Identities = 70/335 (20%), Positives = 126/335 (37%), Gaps = 56/335 (16%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  M    +     + DVV   T G   D+           +  G
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  +
Sbjct: 66  -----EYSD-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I      K   +  +R++G  T LD  R    + +   +DPR VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
            H G +     S                 ++  ++  L D ++N   +++  K   G+  
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATF 231

Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRA 319
             +  A  + + A LR       V+          +            P       +G  
Sbjct: 232 YGIGTALMRISKAILRDEN---AVLPV----GAYMDGQYGLNDIYIGTP-----AIIGGT 279

Query: 320 GIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVS 354
           G+++I    PL+  E   ++ +   L   +  G++
Sbjct: 280 GLKQIIES-PLSADELKKMQDSAATLKKVLNDGLA 313

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  138 bits (351), Expect = 2e-38
 Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 55/335 (16%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  M +  +   + + D+    T G   D+S+         +   
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA 69

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG P+KPG TR DL N N  I+K++ + I       I  +
Sbjct: 70  -----EYSD-AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I      K+  +   R++G  T LD  R    +AE++ +D R V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
            H        +   I  + +   VK    +   ++  + + +++   E+++ K   G+  
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATF 236

Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRA 319
             +A A A+ + A L        V+      S   +            P       + R 
Sbjct: 237 YGIATALARISKAILNDEN---AVLPL----SVYMDGQYGLNDIYIGTP-----AVINRN 284

Query: 320 GIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVS 354
           GI+ I  + PL ++E   ++K+  +L   +    +
Sbjct: 285 GIQNILEI-PLTDHEEESMQKSASQLKKVLTDAFA 318

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  138 bits (349), Expect = 3e-38
 Identities = 76/331 (22%), Positives = 126/331 (38%), Gaps = 46/331 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A        
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              ED     DIV I AG  +KPG TR +L   N  I K +   +       I  + +NP
Sbjct: 66  GTYED-CKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
           V+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G H  
Sbjct: 125 VD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGD 180

Query: 223 ------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
                 +   +  +P+   V+ + +    E+D + D ++N    ++E K   G+    +A
Sbjct: 181 TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYGVA 237

Query: 275 YAAAKFADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEE 323
            + A+   A L        ++      ST  +           +P       + R GI  
Sbjct: 238 MSLARITKAILHNEN---SILTV----STYLDGQYGADDVYIGVP-----AVVNRGGIAG 285

Query: 324 IYSLGPLNEYERAGLEKAKKELAGSIQKGVS 354
           I  L  LNE E+     +   L   ++   +
Sbjct: 286 ITEL-NLNEKEKEQFLHSAGVLKNILKPHFA 315

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  138 bits (349), Expect = 3e-38
 Identities = 76/332 (22%), Positives = 132/332 (39%), Gaps = 55/332 (16%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  +    +V  L + D+      G   D+ H      T   V+ 
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG  +KPG TR DL + N  I K++   +       I  +
Sbjct: 67  ----GEYSD-CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV 121

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I A    K      +R++G  T+LD  R    ++E   + PR VD  ++G
Sbjct: 122 ATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIG 177

Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
            H G T LP+ S                     +I+ +  + ++   ++++AK   G+  
Sbjct: 178 EH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATY 233

Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRA 319
             +A   A+  +A  R       V+      S + E           +P       + R 
Sbjct: 234 YGVAMGLARITEAIFRNED---AVLTV----SALLEGEYEEEDVYIGVP-----AVINRN 281

Query: 320 GIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
           GI  +  + PLN+ E++    + K L   + +
Sbjct: 282 GIRNVVEI-PLNDEEQSKFAHSAKTLKDIMAE 312

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  136 bits (344), Expect = 2e-37
 Identities = 85/332 (25%), Positives = 140/332 (42%), Gaps = 55/332 (16%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G   A  + +      + L DV      G   D+ H         F  +
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP------FTRR 54

Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             +       L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV+    +    F K    DP+++ G  T+LD  R  T +A+  G  PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
            H        +G  I  +PL +  +         ++   ++ +    E++E K   G+  
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATH 227

Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRA 319
            ++A A A   ++     +    V+      S   E           +P     V LG+ 
Sbjct: 228 YAIALAVADIVESIFFDEK---RVLTL----SVYLEDYLGVKDLCISVP-----VTLGKH 275

Query: 320 GIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
           G+E I  L  LNE E     K+   L  +I +
Sbjct: 276 GVERILEL-NLNEEELEAFRKSASILKNAINE 306

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  135 bits (343), Expect = 3e-37
 Identities = 75/333 (22%), Positives = 137/333 (41%), Gaps = 47/333 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H          +  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS 79

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +          +VII AG  ++ G +R +L   N  I K +   + K  P+  + ++SNP
Sbjct: 80  KDYSV-TANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    I   V  K+  +   R++G    LD  R    + E LG+ P      V+G H G
Sbjct: 139 VD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-G 193

Query: 225 VTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 272
            + +P+ S V            +        +   +  ++ +   EV++ K   G  + +
Sbjct: 194 DSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GYTSWA 250

Query: 273 MAYAAAKFADACLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIE 322
           +  + A  A++ ++           ++G  G+ E  +++     +P       LG+ GI 
Sbjct: 251 IGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLS-----VP-----CILGQNGIS 300

Query: 323 EIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
           ++  +  L   E A L+K+   L G IQK + F
Sbjct: 301 DVVKV-TLTPDEEARLKKSADTLWG-IQKELQF 331

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  135 bits (342), Expect = 3e-37
 Identities = 69/335 (20%), Positives = 130/335 (38%), Gaps = 58/335 (17%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           K+AV+GA G +G  LA       +   + L D+          D+ H      T ++   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 67

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                  E      D+V+I AG  +KPG +R +L      I+K +   + K  P AI  L
Sbjct: 68  ----DDPEI-CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML 122

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NPV+    IA  V +K+      ++ G  T LD  R    +A+  G++ + V   + G
Sbjct: 123 ITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAG 178

Query: 221 GHAGVTILPLLSQV-------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267
            H G + +PL                      L   + + +   ++N   +++  K   G
Sbjct: 179 EH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK---G 234

Query: 268 SATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRL 316
           +   ++  +     +A L        ++      S++ +           +P       L
Sbjct: 235 ATNYAIGMSGVDIIEAVLHDTN---RILPV----SSMLKDFHGISDICMSVP-----TLL 282

Query: 317 GRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
            R G+    +  P+++ E A L+++ + L  +  +
Sbjct: 283 NRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 316

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  134 bits (340), Expect = 6e-37
 Identities = 71/327 (21%), Positives = 124/327 (37%), Gaps = 41/327 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
           +V V GAAG I   L        +  K  P++  L L D+        GV  ++   D  
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60

Query: 97  AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              ++  +   + E A   +D+ I+   +PR+ GM R DL   N  I K     + K   
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K++ V ++ NP N+    A+   K   +   +    +T LD  RA   +A  LG+   +V
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 215 DVPVVGGHAGVTILPLLSQV----KPSCSLTPTEI-------DYLTDRIQNGGTEVVEAK 263
              ++ G+   T  P ++      +         +             +Q  G  V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237

Query: 264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST-----VTELPFFASKVRLGR 318
               SA +S A A          G     G      + S      V +   ++  V +  
Sbjct: 238 -KLSSA-MSAAKAICDHVRDIWFG--TPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKD 293

Query: 319 AGIEEIYSLGPLNEYERAGLEKAKKEL 345
              + +  L P+N++ R  ++   KEL
Sbjct: 294 KTWKIVEGL-PINDFSREKMDLTAKEL 319

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  133 bits (338), Expect = 1e-36
 Identities = 71/334 (21%), Positives = 128/334 (38%), Gaps = 58/334 (17%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KV ++G+ G +G   A  + +  +   + L D+          DI H         F   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54

Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             +       L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    +  +V   +    P R++G  T+LD  R    +AE L + P+ V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 221 GHAGVTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
            H G + + + S                  +L+P +   + + ++     ++E K   G+
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GA 226

Query: 269 ATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLG 317
               +    A+   A L   +   GV       S  T            LP       LG
Sbjct: 227 TYYGIGAGLARLVRAILTDEK---GVYTV----SAFTPEVAGVLEVSLSLP-----RILG 274

Query: 318 RAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
             G+        L+  ERA L ++ + L  +   
Sbjct: 275 AGGVAGTVYP-SLSPEERAALRRSAEILKEAAFA 307

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  133 bits (336), Expect = 3e-36
 Identities = 72/335 (21%), Positives = 132/335 (39%), Gaps = 60/335 (17%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KVA++GA G +G   A  M +    + L L DV      G   DI+H    M   ++  G
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 67

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                   D +   D++++ AG  RKPG TR DL   N  I K + + I K     ++ +
Sbjct: 68  -----DYSD-VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    I   + +K       +++G  T+LD +R    ++E LG+D + V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 221 GH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267
            H             AG  I   +   K + +    +   + + ++  G  +++ K   G
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCNFT--EEDKKKIAEDVKTAGATIIKNK---G 232

Query: 268 SATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRL 316
           +    +A +     +  L+       +        TV             LP       +
Sbjct: 233 ATYYGIAVSINTIVETLLKNQN---TIRTV----GTVINGMYGIEDVAISLP-----SIV 280

Query: 317 GRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
              G++E+     L   E   L  + +++   + +
Sbjct: 281 NSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 314

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  131 bits (331), Expect = 1e-35
 Identities = 78/320 (24%), Positives = 122/320 (38%), Gaps = 33/320 (10%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----N 96
           +VAV GAAG IG  L        ML K  P++  L L ++        +   M+      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKA-LEGVVMELEDCAF 62

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+   K
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
            + V ++ NP N+   IA    K     +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSA 269
              V G+   T+ P L       +P+  L   E         +   G  +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238

Query: 270 TLSMAYAAAKFADACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEIY 325
             S A AA +       G     G      V S     + E   ++  V   + G   + 
Sbjct: 239 -ASAANAAIEHIRDWALG--TPEGDWVSMAVPSQGEYGIPEGIVYSFPVT-AKDGAYRVV 294

Query: 326 SLGPLNEYERAGLEKAKKEL 345
               +NE+ R  +E   +EL
Sbjct: 295 EGLEINEFARKRMEITAQEL 314

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  130 bits (328), Expect = 2e-35
 Identities = 56/317 (17%), Positives = 105/317 (33%), Gaps = 45/317 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQ 106
           K+ V+G  G +G    + +    +   L L D+   T G T D+   +   V       +
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVE----ISK 70

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
            L        +VI           +  D+   N  + + L   +      +++ + S P 
Sbjct: 71  DLSA-SAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
              V I   V  K+ T+   R++G+   LD  R    +  VL       +V V+G   G 
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 285
             +   S                  ++ N   E++  K   G  + S+  + A   D+ +
Sbjct: 184 DKVLTWSGQ------EEVVSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVADMVDSIV 234

Query: 286 RG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE- 334
                        +G   +    +++     LP       LG  G+ E+     L E   
Sbjct: 235 NNKKKVHSVSALAKGYYDINSEVFLS-----LP-----CILGTNGVSEVIKT-TLKEDTV 283

Query: 335 RAGLEKAKKELAGSIQK 351
              L+ +   +    Q+
Sbjct: 284 TEKLQSSASSIHSLQQQ 300

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  130 bits (328), Expect = 4e-35
 Identities = 72/324 (22%), Positives = 113/324 (34%), Gaps = 39/324 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 94
           +VAV GAAG I   L        ML K  P++  L L ++ N        GV  +I   D
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62

Query: 95  TNA-VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
               ++ G         A    D+ ++    PR PGM R DL   NA I     + I   
Sbjct: 63  CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122

Query: 154 CPK-AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR 212
             +   V ++ NP N+   IA    K   +   K    +  LD  RA + +A   G    
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179

Query: 213 EVDVPVVGGHAGVTILPLLSQV----KPSCSLTPTE---IDYLTDRIQNGGTEVVEAKTG 265
            ++   V G+   T+                +   +    D     +   G  +++A+ G
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-G 238

Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRAGI 321
             SA    A AA    D     + G AG      + S     + E   F   V       
Sbjct: 239 VSSA----ASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEY 294

Query: 322 EEIYSLGPLNEYERAGLEKAKKEL 345
           + +  L  ++ + +  +     EL
Sbjct: 295 KIVQGL-SIDAFSQERINVTLNEL 317

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  127 bits (323), Expect = 1e-34
 Identities = 66/323 (20%), Positives = 129/323 (39%), Gaps = 52/323 (16%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           K+  +GA G +G   A    +N  V  + L D+      G   D++H    +D    + G
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L+ +    +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +
Sbjct: 61  GADYSLLKGS----EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++    +   +  K        + G+   LD  R    +      +       ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
            H G ++    S      +        + + + + ++    EV++ K   G+     A A
Sbjct: 171 EH-GDSMFVAKSLADFDGEV-------DWEAVENDVRFVAAEVIKRK---GATIFGPAVA 219

Query: 277 AAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIE--EIYSLG 328
             +   A +        +I  +      Y    V          +LG+ G E  +I    
Sbjct: 220 IYRMVKAVVEDTG---EIIPTSMILQGEYGIENV----AVGVPAKLGKNGAEVADI---- 268

Query: 329 PLNEYERAGLEKAKKELAGSIQK 351
            L++ E   L  + K L   +++
Sbjct: 269 KLSDEEIEKLRNSAKILRERLEE 291

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  129 bits (326), Expect = 1e-34
 Identities = 67/323 (20%), Positives = 114/323 (35%), Gaps = 36/323 (11%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
            +AV GAAG I   L        +  +  P+   L L     +     GV  ++   D+ 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89

Query: 97  AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              +R         +    +D  ++    PR PGM R  L +IN  I     + +     
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K + V ++ NP N+   I     K       K    +T LD  RA   +A   G+   +V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 215 DVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGAG 267
               + G+   T +P     K         I       +  T  +Q  G  +++   G  
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265

Query: 268 SATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST-----VTELPFFASKVRLGRAGIE 322
           SA  S A + A    + +       G      V +T     + E   F+   R    G  
Sbjct: 266 SA-ASTAVSIADAIKSLVTP--TPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDY 322

Query: 323 EIYSLGPLNEYERAGLEKAKKEL 345
           E+ +    +++    ++K++ EL
Sbjct: 323 ELATDVSNDDFLWERIKKSEAEL 345

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  125 bits (317), Expect = 1e-33
 Identities = 74/327 (22%), Positives = 121/327 (37%), Gaps = 50/327 (15%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHM-----DTNAVVR 100
           KV V+G  G +G   A  + +    S L L D           DI+H       T     
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
           G          L    +VI+ AG  +KPG +R DL   NA I + L   I +  P A++ 
Sbjct: 61  GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
           + SNPV+    +  ++  ++    P   ++G  T+LD  R    +A+  G+D       V
Sbjct: 114 VTSNPVD----LLTDLATQL---APGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYV 166

Query: 219 VGGH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
           +G H             AG+ +   +                + +  +N    ++E K  
Sbjct: 167 LGEHGDSEVLAWSSAMVAGMPVADFMQAQNL--PWNEQVRAKIDEGTRNAAASIIEGK-- 222

Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASK-VRLGRAGIEEI 324
             +    +  A A+  +A LR  R          V++   E     S    +GR G+   
Sbjct: 223 -RATYYGIGAALARITEAVLRDRR------AVLTVSAPTPEYGVSLSLPRVVGRQGVLST 275

Query: 325 YSLGPLNEYERAGLEKAKKELAGSIQK 351
                L   E+  LE++   L G  Q+
Sbjct: 276 LHP-KLTGDEQQKLEQSAGVLRGFKQQ 301

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  122 bits (308), Expect = 2e-32
 Identities = 64/327 (19%), Positives = 120/327 (36%), Gaps = 48/327 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G  +A  +    +       D           D      N    G +  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 106 QQLEDALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L   D+VI   G  +     P   R       + +V+++   + +     ++ +
Sbjct: 62  NDWAA-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ISNPV+    +   +F+ V  +   +++G  T+LD  R    V E   LDPR V    +G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLG 176

Query: 221 GHAGVTILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            H G +     S V    +P  +L      ++  + +  + GG  V+  K   G  +  +
Sbjct: 177 EH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYTSYGV 232

Query: 274 AYAAAKFADACLR---------GLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEI 324
           A +A + A A +            R D G+    Y++      P       +GR G+   
Sbjct: 233 ATSAIRIAKAVMADAHAELVVSNRRDDMGM----YLS-----YP-----AIIGRDGVLAE 278

Query: 325 YSLGPLNEYERAGLEKAKKELAGSIQK 351
            +L  L   E+  L +++  +     +
Sbjct: 279 TTL-DLTTDEQEKLLQSRDYIQQRFDE 304

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  122 bits (308), Expect = 3e-32
 Identities = 63/327 (19%), Positives = 110/327 (33%), Gaps = 38/327 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+G    +G   A+ + +  L   + L DV+     G   D+ H          +  
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSG 81

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +       G  +V+I AG  ++ G +R +L   N  I K +   I K  P  +  L    
Sbjct: 82  KDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
                    +   K+      R++G    LD  R    + E LG+    V   V+G H G
Sbjct: 141 GT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQH-G 195

Query: 225 VTILPLLSQVKPSCSLTPT-----EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 279
            ++  + S +  +           E+  L          VV       +       + A 
Sbjct: 196 DSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVAD 255

Query: 280 FADACLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLG- 328
            A   ++           ++   G+ +  +++     LP       L   GI     +  
Sbjct: 256 LAQTIMKDLCRVHPVSTMVKDFYGIKDNVFLS-----LP-----CVLNN-GISHCNIVKM 304

Query: 329 PLNEYERAGLEKAKKELAGSIQKGVSF 355
            L   E   L+K+   L   IQK + F
Sbjct: 305 KLKPDEEQQLQKSATTLW-DIQKDLKF 330

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 53.0 bits (126), Expect = 6e-08
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)

Query: 45  PGFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTN 96
           P  K+ ++GA G        ++ L K   L  S + L D+    ++     A     +  
Sbjct: 2   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-------------- 142
           A ++ F     L+D +   D VI  A V     + +        G               
Sbjct: 61  ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119

Query: 143 ------------VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                          +   I K  PKA     +NP+             V    P + +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPI-FEGTTL------VTRTVPIKAVG 172

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVG 220
                       + E LGL+  +VD  V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 28/202 (13%)

Query: 47  FKVAVLGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF 102
            K+A +G  G  G     ++ L     +   + LYD+          I +   N   R +
Sbjct: 6   IKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR-Y 63

Query: 103 LGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNINAG--------- 141
                L+ AL+  DIVII                P + G+ +     +  G         
Sbjct: 64  EAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAV 123

Query: 142 -IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN 200
            I   +   I    P++ V   +NP++    +  +VF  +        +  T   +    
Sbjct: 124 PIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMV 183

Query: 201 TFVAEVLGLDPREVDVPVVGGH 222
           T    +      ++ V V+G +
Sbjct: 184 TERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 40/218 (18%)

Query: 46  GFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTNA 97
            F + + G  G    P   L +L  +    +  L LYD      +      D+   +   
Sbjct: 28  SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP 86

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI--------------- 142
            +  F      E+A T +D V+    V +      D+   +  G+               
Sbjct: 87  DIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGM 145

Query: 143 -----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV 197
                V  + + + K  P A +   SNP          +          ++L +  +  V
Sbjct: 146 RSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS------KILNICDM-PV 198

Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
                +A++LGL  R+    +   + G+      + ++
Sbjct: 199 GIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQ 233

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 40/242 (16%)

Query: 46  GFKVAVLGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTN 96
             K+A +G        + + L       P V  L L D+         +  +     +  
Sbjct: 7   RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNI------ 138
            V            AL G D V     V            P K G+   +          
Sbjct: 66  GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125

Query: 139 --NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV 196
                ++  +   + + CP A +   +NP            K+       +++G+  +  
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQE------KVVGLCNV-P 178

Query: 197 VRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGG 256
           +     VA++LG+D   V +   G +  V  L +         +T   ID +    ++G 
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV---EVTEKVIDLVAHPDRSGV 235

Query: 257 TE 258
           T 
Sbjct: 236 TM 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 48/342 (14%), Positives = 97/342 (28%), Gaps = 95/342 (27%)

Query: 28  GESSGLGRMDCRAKG--GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 85
           G++  +    C +        FK+  L        P  +L  +  L+  +        P 
Sbjct: 162 GKTW-VALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQI-------DPN 212

Query: 86  VTADISHM--------DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFN 137
            T+   H            A +R  L  +  E+ L    +V+              ++  
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVL-------------LNVQ- 254

Query: 138 INAGIVKTLCEGIAKCCPKAIV----NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM 193
            NA         +  C  K ++      +++ +++       +     T  P  +  +  
Sbjct: 255 -NAKAWNAF--NL-SC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-- 306

Query: 194 LDVVRANTFVAEVLGLD----PREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLT 249
                    + + L       PREV          +T  P         S+    I    
Sbjct: 307 ---------LLKYLDCRPQDLPREV----------LTTNPRR------LSIIAESIRDGL 341

Query: 250 DRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI-ECAYVASTVTELP 308
               N      +  T      +  +    + A+   R +     V    A++ + +  L 
Sbjct: 342 ATWDNWKHVNCDKLT----TIIESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 309 FFASKVRLGRAGIEEIYSLGPLNEYERAGL-EKAKKELAGSI 349
           +F          +  +     +N+  +  L EK  KE   SI
Sbjct: 396 WFDVIKSD----VMVV-----VNKLHKYSLVEKQPKESTISI 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	100.0
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.97
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.97
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.75
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.6
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.49
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.46
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.46
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.42
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.41
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.39
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.33
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.31
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.3
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.3
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.27
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.26
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.26
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.26
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.25
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.25
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.24
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.24
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.23
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.22
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.22
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.22
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.22
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.21
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.19
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.19
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.19
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.19
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.19
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.17
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.17
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.16
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.16
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.16
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.16
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.15
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.14
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.14
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.14
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.13
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.1
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.1
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.09
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.09
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.08
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.08
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.07
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.07
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.06
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.06
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.05
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.04
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.04
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.03
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.02
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.02
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.01
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.0
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.0
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.0
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.98
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.97
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	97.97
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.97
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.94
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	97.94
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	97.93
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.93
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	97.93
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	97.92
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.92
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	97.92
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.92
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.91
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.91
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.91
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.91
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.91
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.91
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	97.9
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	97.89
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.86
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	97.86
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	97.85
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	97.85
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.84
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.84
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.83
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.83
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.82
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.82
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.82
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.81
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.81
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.81
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.81
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.81
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	97.8
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.79
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.79
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.79
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.78
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.78
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	97.78
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.77
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.77
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.76
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.76
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.76
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.75
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.74
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.74
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.74
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.73
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.73
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.72
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.72
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	97.71
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	97.7
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.7
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.69
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.68
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.68
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	97.68
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.68
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.67
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.67
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.67
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.67
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.66
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.66
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.65
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.65
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.65
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.64
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.64
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.64
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.64
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.63
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.63
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.63
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.63
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.62
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.62
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.62
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.62
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.62
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.62
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.62
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.61
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.61
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.61
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.61
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.61
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.6
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.6
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.6
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.6
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.59
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.59
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.59
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.59
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.58
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.58
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.57
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.57
1spx_A	278	Short-chain reductase family member (5L265); paral	97.57
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.57
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.57
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.56
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.56
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.56
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.56
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.56
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.56
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.56
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.55
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.55
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.55
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	97.54
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.54
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.53
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.53
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.53
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.53
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.52
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.52
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.52
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.52
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.52
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.52
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.52
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.51
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.51
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.51
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.51
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.51
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.51
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.51
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.5
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.5
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.5
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.5
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.5
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.5
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.5
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.5
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.5
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.49
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.49
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.49
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.49
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.49
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.49
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.49
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.48
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.48
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.48
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.47
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.47
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.47
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.47
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.46
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.46
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.46
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.45
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.45
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.45
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.45
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.45
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.44
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.43
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.42
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.42
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.42
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.42
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.42
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.42
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.41
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.41
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.41
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.4
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.4
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.39
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.39
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.39
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.39
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.39
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.38
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.38
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.37
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.37
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.37
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.37
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.37
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.37
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.37
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.36
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.36
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.36
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.36
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.36
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.36
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.35
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.35
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.35
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.35
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.35
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.35
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.34
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.34
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.33
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.32
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.32
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.31
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.31
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.31
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.31
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.3
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.3
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.3
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.3
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.3
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.29
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.29
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.29
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.29
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.28
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.28
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.27
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.27
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.26
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.26
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.26
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.26
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.26
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.26
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.25
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.25
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.25
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.25
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.25
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.24
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.24
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.24
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.24
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.23
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.22
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.22
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.21
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.2
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.2
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.2
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.2
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.19
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.19
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.19
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.17
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.17
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.17
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.17
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.16
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.16
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.16
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.16
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.16
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.15
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.15
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.15
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.15
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.14
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.14
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.14
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.14
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.13
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.12
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.12
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.11
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.11
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.11
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.11
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.1
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.1
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.09
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.09
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.09
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.09
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.09
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.07
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.07
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.07
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.05
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.05
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.04
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.03
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.01
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.94
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.92
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.92
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.89
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.89
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.89
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.89
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.88
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.87
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.87
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.84
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.82
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.81
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.81
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.81
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.76
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.75
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.75
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.72
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.72
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.71
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.7
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.62
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.57
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.57
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.51
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.51
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.5
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.49
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.48
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.45
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.43
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.41
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.4
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.4
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.39
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.37
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.38
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.33
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.3
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.28
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.23
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.22
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.22
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.19
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.14
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.08
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.08
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.07
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.06
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	96.06
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.05
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.05
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.05
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.04
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.03
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.01
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	95.98
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.98
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.98
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.96
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.95
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.95
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	95.94
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.94
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.87
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	95.87
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.86
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.85
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.85
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.84
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.84
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.79
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.79
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.78
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.76
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.74
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.71
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	95.7
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	95.7
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	95.68
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	95.65
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.64
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.63
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	95.6
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	95.6
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.57
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.54
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.52
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.51
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	95.51
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.5
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.5
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.48
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.45
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.45
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	95.44

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=4.5e-66  Score=493.91  Aligned_cols=308  Identities=56%  Similarity=0.860  Sum_probs=274.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      |||+||||+|+||+++++.|.++ ++..||+|+|+++ ..|+++||+|......+..+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            79999997799999999999887 7788999999987 7799999999864344554432 2346899999999999999


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC-CCCcEEEeeeccHHHHHHHH
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY-DPKRLLGVTMLDVVRANTFV  203 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~-p~~kviG~t~lds~R~~~~l  203 (358)
                      ||++||+|.|++.+|++++++++++|.++||+++++++|||+|++|++++++ ++.+|+ |++||+|+|.||++|+++++
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~-~k~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEV-LKKAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHH-HHHTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHH-HHHcCCCCcceEEEEechhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986554 456677 99999999999999999999


Q ss_pred             HHHhCCCCCCCceEEEEec-CCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHH
Q 018265          204 AEVLGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD  282 (358)
Q Consensus       204 A~~l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~  282 (358)
                      |+++|+++++|+++||||| |+ +++|+||++ .+.++++++|++|.++|+++|++|++.|.|+|+++||+|.|++++++
T Consensus       159 a~~lgv~~~~v~~~V~G~Hsg~-t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~  236 (312)
T 3hhp_A          159 AELKGKQPGEVEVPVIGGHSGV-TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGL  236 (312)
T ss_dssp             HHHHTCCGGGCCCCEEECSSGG-GEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHhCcChhHcceeEEeccCCC-ceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHH
Confidence            9999999999999999999 65 899999998 33457888999999999999999999776679999999999999999


Q ss_pred             HHHccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 018265          283 ACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK  358 (358)
Q Consensus       283 ai~~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  358 (358)
                      +|+...++++.++||++++|+...++|||+||++|++|+++++++++|+++|+++|++|++.|+++++++++|+++
T Consensus       237 ai~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~i~~g~~~~~~  312 (312)
T 3hhp_A          237 SLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_dssp             HHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCCCceEEEEEecCCCCcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9954333344688999888765568999999999999999999966999999999999999999999999999864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=1.9e-64  Score=484.11  Aligned_cols=310  Identities=56%  Similarity=0.947  Sum_probs=286.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||+||||+|+||++++..|+..++..+|+|+|+++.++.++||.|.....+++.+.+++|+++|++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999998899999999999998888899999998878899999998654456654345688889999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHH
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~  206 (358)
                      ++|++|.|++.+|++++++++++|++++|++|+|++|||+|++|+++++++++.++||++||||+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             hCCCCCCCceEEEEec-CCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHHHHH
Q 018265          207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL  285 (358)
Q Consensus       207 l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~ai~  285 (358)
                      +|+++++|+++||||| |+ +++|+||++++...+++++++++.+++++++++|++.|.|+|+++||+|.++++++++|+
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~  239 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV  239 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 67 899999999864458888899999999999999999877789999999999999999999


Q ss_pred             ccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018265          286 RGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR  357 (358)
Q Consensus       286 ~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  357 (358)
                      +|+++++.++++++++|+|++++|||+||++|++|+++++++++|+++|+++|++|++.|+++++++++|++
T Consensus       240 ~~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l~~~~~~~~~~~~  311 (314)
T 1mld_A          240 DAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVK  311 (314)
T ss_dssp             HHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcCCCcceEEEEEeCCccCCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            997655458888888999988999999999999999999885599999999999999999999999999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=2.3e-64  Score=485.19  Aligned_cols=297  Identities=25%  Similarity=0.396  Sum_probs=265.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCcHHhhhCCCCEEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      ..+.+||+|||| |.||+++++.++.+++.++|+|+|+++  ++|+++||+|+..++ ..... .++|+ ++++|||+||
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d~-~~~~~aDiVv   92 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIV-SSKDY-SVTANSKLVI   92 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEE-ECSSG-GGGTTEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEE-EcCCH-HHhCCCCEEE
Confidence            456789999998 999999999999999989999999987  789999999985322 21222 34676 5799999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHH
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R  198 (358)
                      +++|.||++||+|.|++.+|++++++++++|+++||++|++++|||+|++|+++    ++.+++|++||||+ |.||++|
T Consensus        93 i~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~----~k~sg~p~~rviG~gt~LD~~R  168 (331)
T 4aj2_A           93 ITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA----WKISGFPKNRVIGSGCNLDSAR  168 (331)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHH
T ss_pred             EccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHHhCCCHHHEEeeccccHHHH
Confidence            999999999999999999999999999999999999999999999999998654    67789999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC------------CCChhHHHHHHHHHhcCcceeeecccCC
Q 018265          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGA  266 (358)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gk  266 (358)
                      +++++|+++|+++++|+++||||||+ ++||+||++++.+            .+++++|++|.++|+++|++|++.|   
T Consensus       169 ~~~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---  244 (331)
T 4aj2_A          169 FRYLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---  244 (331)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcC---
Confidence            99999999999999999999999998 9999999998632            2356779999999999999999964   


Q ss_pred             CcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHH
Q 018265          267 GSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK  343 (358)
Q Consensus       267 g~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~  343 (358)
                      |+++||+|.++++++++|++|.+   .++|++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|++|++
T Consensus       245 g~t~~a~a~a~a~~~~ail~d~~---~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~  320 (331)
T 4aj2_A          245 GYTSWAIGLSVADLAESIMKNLR---RVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSAD  320 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECC-CCCHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhCCC---CeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccC-CCCHHHHHHHHHHHH
Confidence            78999999999999999999864   588886 779998  57999999999999999999995 999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 018265          344 ELAGSIQKGVSF  355 (358)
Q Consensus       344 ~l~~~~~~~~~~  355 (358)
                      .|++ +.++++|
T Consensus       321 ~l~~-~~~~~~~  331 (331)
T 4aj2_A          321 TLWG-IQKELQF  331 (331)
T ss_dssp             HHHH-HHTTCCC
T ss_pred             HHHH-HHhhcCC
Confidence            9997 5566553

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=1.1e-63  Score=472.92  Aligned_cols=282  Identities=23%  Similarity=0.357  Sum_probs=254.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  ++|+++||+|+..    .+.+..   ++|+ ++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~---~~d~-~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GADY-SLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec---CCCH-HHhCCCCEEEE
Confidence            79999998 999999999999999999999999987  7899999999642    233332   4575 78999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      +||.||+|||+|.|++..|++|+++++++|.++||+++++++|||+|++||++    ++.+|+|++|+||+ |.||++||
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~----~k~sg~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSSCCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh----HHHcCCChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999998765    78899999999999 89999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHH
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK  279 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~  279 (358)
                      ++++++.+++++.  +++|||+||+ +++|+||++++..   ..+++++.++++.+|++|++.   ||+++||+|.++++
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g---~~~~~~i~~~~~~~g~eIi~~---kGst~~a~a~a~~~  222 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEES---CCCHHHHHHHHHTHHHHHHHH---HSSCCHHHHHHHHH
T ss_pred             HHHHhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCC---chhHHHHHHHHhhhheEEEec---CcccchhHHHHHHH
Confidence            9999999887643  7899999999 9999999998743   235678889999999999985   58999999999999


Q ss_pred             HHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018265          280 FADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK  351 (358)
Q Consensus       280 ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~  351 (358)
                      ++++|++|++   .++|++ +++|+| .+++|||+||++|++|+ +++++ +|+++|+++|++|++.||+.+++
T Consensus       223 ~~~ail~d~~---~v~~~s~~l~g~yG~~~v~~s~P~~lg~~Gv-ei~~l-~L~~~E~~~l~~s~~~lk~~i~~  291 (294)
T 2x0j_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGA-EVADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEE-EECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCC---cEEEEEEEEecCCCCccEEEEEEEEEeCCEE-EEeCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999865   599997 679999 67999999999999998 58885 99999999999999999998875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=3e-62  Score=469.56  Aligned_cols=298  Identities=31%  Similarity=0.507  Sum_probs=268.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCcHHhhhCCCCE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~aDi  117 (358)
                      |+.+||+|||+ |.+|+++++.|+..++. +|+|+|+++  ++|.++||+|+..    ...+..   ++|+ ++++|||+
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d~-~a~~~aDv   76 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TNDY-KDLENSDV   76 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCCH-HHHCCCCE
Confidence            56789999998 99999999999999887 999999988  5789999999742    234443   3565 89999999


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-eccH
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDV  196 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t-~lds  196 (358)
                      ||+++|.|+++|++|.|++.+|++++++++++|+++||+++++++|||+|++|+++    ++++++|++||+|+| .||+
T Consensus        77 VIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~LD~  152 (321)
T 3p7m_A           77 VIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML----QKFSGVPDNKIVGMAGVLDS  152 (321)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEECHHHHH
T ss_pred             EEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHhcCCCHHHEEeeccchHH
Confidence            99999999999999999999999999999999999999999999999999998654    778899999999996 9999


Q ss_pred             HHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeecccCC
Q 018265          197 VRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGA  266 (358)
Q Consensus       197 ~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gk  266 (358)
                      +|+++++|+++|+++++|+++||||||+ +++|+||++++..          .+++++++++.++++++|++|++++ |+
T Consensus       153 ~R~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~  230 (321)
T 3p7m_A          153 ARFRTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KT  230 (321)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CC
Confidence            9999999999999999999999999998 9999999998742          1366778999999999999999987 78


Q ss_pred             CcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEe-CCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 018265          267 GSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVA-STV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK  342 (358)
Q Consensus       267 g~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~-g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~  342 (358)
                      |+++||+|.++++++++|++|++   .++|++ +++ |+|  ++++|||+||++|++|++++ ++ +|+++|+++|++|+
T Consensus       231 gsa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l-~L~~~E~~~l~~s~  305 (321)
T 3p7m_A          231 GSAYYAPAAAGIQMAESFLKDKK---MILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EV-EISDKEREQLQVSI  305 (321)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CC-CCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCC---cEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CC-CCCHHHHHHHHHHH
Confidence            99999999999999999999864   599997 678 888  56999999999999999999 85 99999999999999


Q ss_pred             HHHHHHHHHhhhhhhC
Q 018265          343 KELAGSIQKGVSFVRK  358 (358)
Q Consensus       343 ~~l~~~~~~~~~~~~~  358 (358)
                      +.|++.++...+++++
T Consensus       306 ~~l~~~~~~~~~~l~~  321 (321)
T 3p7m_A          306 NAIKDLNKAAAEILAK  321 (321)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999988777653

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=2.1e-63  Score=475.87  Aligned_cols=297  Identities=27%  Similarity=0.466  Sum_probs=260.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||| |.||+++++.|++.+++++|+|+|+++  ++|+++||+|+..  ....+.. ++.+ +++++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~-~~~~-~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVT-GTND-YGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEE-EESS-SGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEE-ECCC-HHHhCCCCEEEECC
Confidence            79999998 999999999999999888999999988  7899999999742  1122222 1234 58899999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-eccHHHHHH
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANT  201 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t-~lds~R~~~  201 (358)
                      |.|+++||+|.|++.+|++++++++++|+++||++|++++|||+|++|+++    +++++||++||+|+| .||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~~g~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA----YEASGFPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH----HHHHTCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH----HHhcCCChHHEEeecCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999998775    567899999999995 999999999


Q ss_pred             HHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-----CCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHH
Q 018265          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA  276 (358)
Q Consensus       202 ~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a  276 (358)
                      ++|+++|+++++|+++||||||+ ++||+||++++..     .++++++++|.++++++|++|+++| |+ +++||+|.+
T Consensus       154 ~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a  230 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAA  230 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHH
T ss_pred             HHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHH
Confidence            99999999999999999999998 9999999998753     2466678999999999999999977 44 899999999


Q ss_pred             HHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 018265          277 AAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVS  354 (358)
Q Consensus       277 i~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~  354 (358)
                      +++++++|++|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++++++..+
T Consensus       231 ~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~~~  306 (314)
T 3nep_X          231 AAEMTEAILKDNK---RILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDDLQR  306 (314)
T ss_dssp             HHHHHHHHHHTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC---eEEEEEEEeccccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999853   589987 789998 57999999999999999999996 99999999999999999999998876


Q ss_pred             hhh
Q 018265          355 FVR  357 (358)
Q Consensus       355 ~~~  357 (358)
                      +++
T Consensus       307 ~l~  309 (314)
T 3nep_X          307 LRD  309 (314)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2e-63  Score=477.86  Aligned_cols=294  Identities=23%  Similarity=0.389  Sum_probs=245.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCcHHhhhCCCCEEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      ..+++||+|||| |+||+++++.|+..+++++|+|+|+++  ++|+++||+|+... ..++..  +.+ +++++|||+||
T Consensus         6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~--~~~-~~a~~~aDiVv   81 (326)
T 3vku_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY--SAE-YSDAKDADLVV   81 (326)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE--ECC-GGGGTTCSEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEE--ECc-HHHhcCCCEEE
Confidence            345679999998 999999999999999989999999987  68999999998531 234443  234 58899999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHH
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R  198 (358)
                      +++|.|+++||+|.|++.+|++++++++++|+++||++|++++|||+|++|+++    ++++++|++||||+ |.||++|
T Consensus        82 i~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~----~k~~g~p~~rviG~gt~LD~~R  157 (326)
T 3vku_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTAR  157 (326)
T ss_dssp             ECCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHH
T ss_pred             ECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH----HHhcCCCHHHeeeecccCcHHH
Confidence            999999999999999999999999999999999999999999999999998654    67889999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C----------CChhHHHHHHHHHhcCcceeeecccCCC
Q 018265          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----------LTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (358)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~ii~~~~gkg  267 (358)
                      +++++|+++|+++++|+++||||||+ ++||+||++++.+ +          ++++++++|.++|+++|++|++.   ||
T Consensus       158 ~~~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG  233 (326)
T 3vku_A          158 FRQSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKL---KG  233 (326)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH---HS
T ss_pred             HHHHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc---CC
Confidence            99999999999999999999999998 9999999998753 1          14566889999999999999994   58


Q ss_pred             cccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHH
Q 018265          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL  345 (358)
Q Consensus       268 ~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l  345 (358)
                      +++||+|.++++++++|++|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus       234 ~t~~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~sa~~L  309 (326)
T 3vku_A          234 ATFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQL  309 (326)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhcCCC---ceEEEEeeccCccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999843   589986 789998 56999999999999999999995 99999999999999999


Q ss_pred             HHHHHHh
Q 018265          346 AGSIQKG  352 (358)
Q Consensus       346 ~~~~~~~  352 (358)
                      ++.+++.
T Consensus       310 ~~~~~~~  316 (326)
T 3vku_A          310 KKVLTDA  316 (326)
T ss_dssp             HCC----
T ss_pred             HHHHHHH
Confidence            9888765

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.2e-61  Score=467.01  Aligned_cols=310  Identities=89%  Similarity=1.347  Sum_probs=282.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .++|||+||||+|+||++++..|+..++..+|+|+|+++..+.++||.+......+..+.+++|++++++|||+||+++|
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            45689999997799999999999988877899999988767788999986543356554445688899999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~l  203 (358)
                      .|+++|++|.+++.+|+++++++++++++++|++||+++|||+|++|++++++++++++||++||||+|.||+.|+++++
T Consensus        86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~l  165 (326)
T 1smk_A           86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFV  165 (326)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCceEEEEec-CCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHH
Q 018265          204 AEVLGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD  282 (358)
Q Consensus       204 A~~l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~  282 (358)
                      |+++|+++++|+++||||| |+ +++|+||.+++...+++++++++.+++++++++|++.|.|+|+++||+|.+++++++
T Consensus       166 a~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~  244 (326)
T 1smk_A          166 AEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  244 (326)
T ss_dssp             HHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999 76 899999999886668888899999999999999999876778999999999999999


Q ss_pred             HH---HccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018265          283 AC---LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR  357 (358)
Q Consensus       283 ai---~~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  357 (358)
                      +|   ++|++   .++++++++|+|++++|+|+||++|++|+++++++++|+++|+++|++|++.|+++++++.+|++
T Consensus       245 ai~~~~~~~~---~v~~~~~~~g~~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s~~~l~~~~~~~~~~~~  319 (326)
T 1smk_A          245 ACLRGLRGDA---GVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR  319 (326)
T ss_dssp             HHHHHHHTCS---CEEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCC---eEEEEEeeccccCCceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99   88764   58899988898888999999999999999999994499999999999999999999999998875

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=2.2e-62  Score=470.70  Aligned_cols=298  Identities=30%  Similarity=0.496  Sum_probs=262.3

Q ss_pred             CCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCcHHhhhCC
Q 018265           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        41 ~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~  114 (358)
                      |+.|+++||+|||| |.+|+++++.|+..++. +|+|+|+++  ++|.++||.|...    ...+..   ++|+ ++++|
T Consensus         2 ~~~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~   75 (324)
T 3gvi_A            2 PGSMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEG   75 (324)
T ss_dssp             ----CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTT
T ss_pred             CCCCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCC
Confidence            45677889999998 99999999999999886 999999988  6788999998742    234443   3576 89999


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-e
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-M  193 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t-~  193 (358)
                      ||+||+++|.|+++|++|.|++.+|++++++++++|+++||++|++++|||+|++|+++    ++++++|++||+|+| .
T Consensus        76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~  151 (324)
T 3gvi_A           76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL----QKFSGLPAHKVVGMAGV  151 (324)
T ss_dssp             CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHH
T ss_pred             CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH----HHhcCCCHHHEEeecCc
Confidence            99999999999999999999999999999999999999999999999999999998764    678899999999996 8


Q ss_pred             ccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeecc
Q 018265          194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAK  263 (358)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~  263 (358)
                      ||+.|+++++|+++|+++++|+++||||||+ +++|+||++++..          .+++++++++.++++++|++|++++
T Consensus       152 LD~~R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~  230 (324)
T 3gvi_A          152 LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL  230 (324)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc
Confidence            9999999999999999999999999999998 9999999998742          1366778999999999999999987


Q ss_pred             cCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 018265          264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA  341 (358)
Q Consensus       264 ~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s  341 (358)
                       |+|+++||+|.++++++++|++|++   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|
T Consensus       231 -gkgsa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s  305 (324)
T 3gvi_A          231 -KTGSAFYAPAASAIQMAESYLKDKK---RVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI-DLDKDEKAQFDKS  305 (324)
T ss_dssp             -SSCCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHH
Confidence             7899999999999999999999864   599997 789999 56999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 018265          342 KKELAGSIQKGVS  354 (358)
Q Consensus       342 ~~~l~~~~~~~~~  354 (358)
                      ++.|++.++....
T Consensus       306 ~~~l~~~~~~~~~  318 (324)
T 3gvi_A          306 VASVAGLCEACIG  318 (324)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=8.1e-62  Score=461.11  Aligned_cols=282  Identities=23%  Similarity=0.353  Sum_probs=256.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC--C--CCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--T--NAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~--~--~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      |||+|||| |.+|+++++.|+..+++++|+|+|+++  ++|+++|+.|..  .  ...+..   ++| +++++|||+||+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eCC-HHHhCCCCEEEE
Confidence            79999999 999999999999999888999999987  678899998864  2  223443   457 689999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      ++|.|+++|++|.|++.+|++++++++++|.++||+++++++|||+|++|+++    +++++||++||||+ |.||++|+
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  151 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEECSHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH----HHhcCCCHHHEeecccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998664    78899999999999 89999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHH
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK  279 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~  279 (358)
                      ++++| ++|+++++ +++||||||+ ++||+||++++.. .+  ++++|.++++++|++|++.|   |+++||+|.++++
T Consensus       152 ~~~la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~k---G~t~~~~a~a~~~  222 (294)
T 1oju_A          152 KERLY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHHH---SSCCHHHHHHHHH
T ss_pred             HHHHH-HhCCCccC-ceEEEecCCC-ceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHhc---CCcchHHHHHHHH
Confidence            99999 99999999 9999999998 9999999999843 22  68899999999999999964   7999999999999


Q ss_pred             HHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018265          280 FADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK  351 (358)
Q Consensus       280 ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~  351 (358)
                      ++++|++|.+   .++|++ +++|+| .+++|||+||++|++|++ ++++ +|+++|+++|++|++.|++.+++
T Consensus       223 ~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~l-~L~~~E~~~l~~s~~~l~~~~~~  291 (294)
T 1oju_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCC---eEEEEEecccccCCCCceEEEEEEEEeCCEEE-EecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999854   599997 789998 559999999999999999 9995 99999999999999999998875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=6e-62  Score=466.20  Aligned_cols=291  Identities=30%  Similarity=0.475  Sum_probs=263.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC--C--chhHHHHHhcCC----CCCeEEEEeCCCcHHhhhCCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--N--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMD  116 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~--~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aD  116 (358)
                      +.+||+|||+ |.+|+++++.++..++ ++|+|+|++  +  ++|.++|+.|..    ....+..   ++|+ ++++|||
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD   80 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSDY-ADTADSD   80 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCCH-HHhCCCC
Confidence            4569999998 9999999999999998 899999998  4  678899999864    2234543   3564 8899999


Q ss_pred             EEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eecc
Q 018265          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLD  195 (358)
Q Consensus       117 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~ld  195 (358)
                      +||+++|.|+++|++|.|++.+|+++++++++++.++||++|++++|||+|++|+++    ++++|+|++||+|+ |.||
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~----~k~sg~p~~rviG~gt~LD  156 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV----FKEAGFPKERVIGQSGVLD  156 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH----HHhcCCChHHEEeeccCcH
Confidence            999999999999999999999999999999999999999999999999999998775    56789999999999 9999


Q ss_pred             HHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-----CCChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          196 VVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       196 s~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      +.|+++++|+++|+++++|+++||||||+ ++||+||++++..     .++++++++|.++|+++|++|++++ |||+++
T Consensus       157 ~~R~~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~  234 (315)
T 3tl2_A          157 TARFRTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAY  234 (315)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCC
T ss_pred             HHHHHHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcch
Confidence            99999999999999999999999999998 9999999998753     2567778999999999999999974 689999


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS  348 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~  348 (358)
                      ||+|.++++++++|++|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.
T Consensus       235 ~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~  310 (315)
T 3tl2_A          235 YAPAASLVEMTEAILKDQR---RVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNV  310 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999853   599997 789999 57999999999999999999996 99999999999999999988


Q ss_pred             HHH
Q 018265          349 IQK  351 (358)
Q Consensus       349 ~~~  351 (358)
                      ++.
T Consensus       311 ~~~  313 (315)
T 3tl2_A          311 MKV  313 (315)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=2e-62  Score=471.31  Aligned_cols=292  Identities=25%  Similarity=0.345  Sum_probs=263.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      +++||+|||+ |.||+++++.|+..+++++|+|+|+++  ++|+++||+|+...  ..++.+  +.| +++++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~--~~~-~~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS--YGT-YEDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEE--EEC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEE--eCc-HHHhCCCCEEEE
Confidence            4579999998 999999999999999888999999987  68999999998321  234443  245 478999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      ++|.|+++|++|.|++..|++++++++++|.++||++|++++|||+|++|+++    +++++||++||||+ |.||+.|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT----WKFSGLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH----HHhcCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998664    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C----------CChhHHHHHHHHHhcCcceeeecccCCCc
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  268 (358)
                      ++++|+++|+++++|+++||||||+ ++||+||++++.+ +          ++++++++|.++|+++|++|++.   ||+
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGA  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH---HSC
T ss_pred             HHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeC---CCC
Confidence            9999999999999999999999998 9999999998742 1          25567899999999999999995   489


Q ss_pred             ccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 018265          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA  346 (358)
Q Consensus       269 t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  346 (358)
                      ++||+|.++++++++|++|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       232 t~~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~~l~  307 (326)
T 3pqe_A          232 TYYGVAMSLARITKAILHNEN---SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAGVLK  307 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEECCEEEEESGGGCEEEEEECCEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCC---cEEEEEEeeccccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999853   589986 789998 56999999999999999999995 999999999999999999


Q ss_pred             HHHHHh
Q 018265          347 GSIQKG  352 (358)
Q Consensus       347 ~~~~~~  352 (358)
                      +.+++.
T Consensus       308 ~~~~~~  313 (326)
T 3pqe_A          308 NILKPH  313 (326)
T ss_dssp             HHHTTT
T ss_pred             HHHHHh
Confidence            988754

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=6.5e-62  Score=470.29  Aligned_cols=300  Identities=26%  Similarity=0.362  Sum_probs=257.8

Q ss_pred             CCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCcHHhhhCCCCE
Q 018265           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        41 ~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDi  117 (358)
                      ..|++++||+||||+|+||+++++.++..++..||+|+|+++  ++|+++||+|+.+. ..++.   ++|++++++|||+
T Consensus         3 ~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADv   79 (343)
T 3fi9_A            3 LSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKY   79 (343)
T ss_dssp             CCCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEE
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCE
Confidence            467888999999987999999999999999888999999987  68999999997532 23443   4678899999999


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeE-EEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccH
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV  196 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~-viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds  196 (358)
                      ||+++|.|+++|++|.|++.+|++++++++++|+++||+++ ++++|||+|++|+++    ++.+++|++||+|+|.||+
T Consensus        80 VvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~----~k~sg~p~~rv~g~t~LDs  155 (343)
T 3fi9_A           80 IVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT----LIYSGLKPSQVTTLAGLDS  155 (343)
T ss_dssp             EEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH----HHHHTCCGGGEEEECCHHH
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH----HHHcCCCcceEEEecCcHH
Confidence            99999999999999999999999999999999999999996 899999999998875    5677999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeecccC
Q 018265          197 VRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTG  265 (358)
Q Consensus       197 ~R~~~~lA~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~g  265 (358)
                      +||++++|+++|+++++|+ ++||||||+ +++|+||++++.+          .+++++|++|.++|+++|++|++.| |
T Consensus       156 ~R~~~~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g  233 (343)
T 3fi9_A          156 TRLQSELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR-G  233 (343)
T ss_dssp             HHHHHHHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH-S
T ss_pred             HHHHHHHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc-C
Confidence            9999999999999999996 899999998 9999999998742          1467789999999999999999976 2


Q ss_pred             CCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCCCCccEEEEEEEEcCCceEEEccCCC-CCHHHHHHHHHHHH
Q 018265          266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVTELPFFASKVRLGRAGIEEIYSLGP-LNEYERAGLEKAKK  343 (358)
Q Consensus       266 kg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~-L~~~E~~~l~~s~~  343 (358)
                       .+++||+|.++++++++|++|++   .++|++ +++|++.+++|||+||++|++|++.+ .+.+ |+++|+++|++|++
T Consensus       234 -~ss~~s~A~a~~~~~~ail~d~~---~v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~  308 (343)
T 3fi9_A          234 -RSSFQSPSYVSIEMIRAAMGGEA---FRWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYS  308 (343)
T ss_dssp             -SCCCHHHHHHHHHHHHHHTTSSC---CCSCEEEEEEETTEEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHH
T ss_pred             -CCcHHhHHHHHHHHHHHHHhCCC---ceEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHH
Confidence             24466999999999999999875   367765 78887778999999999999999876 4322 89999999999999


Q ss_pred             HHHHHHHHhhh
Q 018265          344 ELAGSIQKGVS  354 (358)
Q Consensus       344 ~l~~~~~~~~~  354 (358)
                      .|++.++....
T Consensus       309 ~l~~~~~~~~~  319 (343)
T 3fi9_A          309 HLAKLRDEVIA  319 (343)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998876643

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=1.6e-60  Score=460.26  Aligned_cols=309  Identities=25%  Similarity=0.311  Sum_probs=249.7

Q ss_pred             ccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCC
Q 018265           35 RMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQ  105 (358)
Q Consensus        35 ~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t  105 (358)
                      ...|+.++.+.+.||+|+||+|+||+++++.|++.+++.     ||+|+|+++    ++|.++||+|+.+........ +
T Consensus        13 ~~~~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~   91 (345)
T 4h7p_A           13 EAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-T   91 (345)
T ss_dssp             ---------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-E
T ss_pred             cccccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-c
Confidence            344777888889999999998999999999999987654     999999986    478999999997644444433 4


Q ss_pred             CcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      +|.+++++|||+||++||.||+|||+|.|++..|++|++++++.|.++| |+++|+++|||+|+++++++   ++.+|+|
T Consensus        92 ~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~---~~~~g~~  168 (345)
T 4h7p_A           92 ADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILL---KSAQGKL  168 (345)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH---HHTTTCS
T ss_pred             CChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHH---HHccCCC
Confidence            5678999999999999999999999999999999999999999999997 79999999999999998753   4566777


Q ss_pred             CCcEEEe-eeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCCCcccccccccCCCC-----CCChhHH-HHHHHHHhcCc
Q 018265          185 PKRLLGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----SLTPTEI-DYLTDRIQNGG  256 (358)
Q Consensus       185 ~~kviG~-t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~-~~l~~~v~~~~  256 (358)
                      +.|+||. |.||++|+++++|+++|+++++|+ .+|||+||+ ++||+||++++..     .++++.+ +++.++++++|
T Consensus       169 ~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g  247 (345)
T 4h7p_A          169 NPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRG  247 (345)
T ss_dssp             CGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHH
T ss_pred             CcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhh
Confidence            6666655 999999999999999999999996 668999999 9999999998753     1333333 47999999999


Q ss_pred             ceeeecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EE-eCCC--CCccEEEEEEEEcCCceEEEccCCCCCH
Q 018265          257 TEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YV-ASTV--TELPFFASKVRLGRAGIEEIYSLGPLNE  332 (358)
Q Consensus       257 ~~ii~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~-~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~  332 (358)
                      ++|++.|  ++++.||+|.++++++++|+++++... ++++. +. +|+|  ++++|||+||+++ +|.+++++.++|++
T Consensus       248 ~eIi~~k--g~ss~~s~a~a~~~~~~~~l~~~~~~~-~vs~~v~s~~g~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~  323 (345)
T 4h7p_A          248 AEIIQLR--GLSSAMSAAKAAVDHVHDWIHGTPEGV-YVSMGVYSDENPYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGD  323 (345)
T ss_dssp             HHHHHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCTTCCCSSCEEEEEEEEE-TTEEEECCSCC---
T ss_pred             hhhhhcC--CCcchhhHHHHHHHHHHHHhcCCCCce-EEEEEEEeCCCCcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCH
Confidence            9999987  357889999999999999999986432 33333 34 5888  6899999999997 78888888669999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 018265          333 YERAGLEKAKKELAGSIQKG  352 (358)
Q Consensus       333 ~E~~~l~~s~~~l~~~~~~~  352 (358)
                      +|+++|++|+++|++|.+.+
T Consensus       324 ~e~~~l~~s~~~L~~E~~~A  343 (345)
T 4h7p_A          324 LGKQRLASTIAELQEERAQA  343 (345)
T ss_dssp             --CGGGHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999987654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2e-60  Score=458.16  Aligned_cols=299  Identities=23%  Similarity=0.380  Sum_probs=260.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      .++++||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++||.|+.. ...++...  .+ +++++|||+||
T Consensus         6 ~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVi   81 (326)
T 2zqz_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVV   81 (326)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEE
Confidence            345689999999 999999999999999889999999987  6789999999752 23344432  24 68899999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHH
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R  198 (358)
                      +++|.|+++|++|.|++.+|++++++++++|+++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|
T Consensus        82 i~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R  157 (326)
T 2zqz_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTAR  157 (326)
T ss_dssp             ECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHH
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH----HHHcCCCHHHEEEccccchHHH
Confidence            999999999999999999999999999999999999999999999999998654    77789999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-----------CCChhHHHHHHHHHhcCcceeeecccCCC
Q 018265          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (358)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg  267 (358)
                      +++++|+++|+++++|+++||||||+ +++|+||++++..           .++++.++++.+++++++++|++   +||
T Consensus       158 ~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~---~kG  233 (326)
T 2zqz_A          158 FRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKG  233 (326)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH---HHS
T ss_pred             HHHHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH---cCC
Confidence            99999999999999999999999998 9999999987632           14556678999999999999998   457


Q ss_pred             cccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHH
Q 018265          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL  345 (358)
Q Consensus       268 ~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l  345 (358)
                      +++|++|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus       234 ~t~~~~a~aa~~~~~ai~~~~~---~~~~vsv~~~G~yg~~~~~~svP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l  309 (326)
T 2zqz_A          234 ATFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQL  309 (326)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhCCC---cEEEEEEeccCccCCCceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            8999999999999999999864   488886 779998 34999999999999999999995 99999999999999999


Q ss_pred             HHHHHHhhhhhh
Q 018265          346 AGSIQKGVSFVR  357 (358)
Q Consensus       346 ~~~~~~~~~~~~  357 (358)
                      ++++++..++++
T Consensus       310 ~~~~~~~~~~~~  321 (326)
T 2zqz_A          310 KKVLTDAFAKND  321 (326)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHhhh
Confidence            999999988775

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=4.5e-60  Score=460.09  Aligned_cols=300  Identities=20%  Similarity=0.214  Sum_probs=252.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcE---EEEEeCCC------chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV---LHLYDVVN------TPGVTADISHMDTN--AVVRGFLGQQQLEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~e---l~L~D~~~------~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~  113 (358)
                      +++||+||||+|+||+++++.|+.++++++   |+|+|.+.      ++|++|||+|+.+.  ..++.   +++.+++++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i---~~~~y~~~~  107 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI---GIDPYEVFE  107 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE---ESCHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE---ecCCHHHhC
Confidence            467999999779999999999999998877   77766543      58999999999742  23443   234468999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-  191 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-  191 (358)
                      |||+||+++|.||++||+|.|++..|++|+++++++|.++ +|++++|++|||+|++||++    ++.+++++.|+||. 
T Consensus       108 daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia----~k~sg~~~~rvig~g  183 (375)
T 7mdh_A          108 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC----LKNAPDIPAKNFHAL  183 (375)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----HHHcCCCCccEEEee
Confidence            9999999999999999999999999999999999999998 79999999999999998775    67666666788888 


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCce-EEEEecCCCcccccccccCCCC----C-CChhHH--HHHHHHHhcCcceeeecc
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC----S-LTPTEI--DYLTDRIQNGGTEVVEAK  263 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~----~-~~~~~~--~~l~~~v~~~~~~ii~~~  263 (358)
                      |.||++||++++|+++|+++++|+. +||||||+ ++||+||++++.+    . ..+++|  ++|.++|+++|++|++.|
T Consensus       184 T~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k  262 (375)
T 7mdh_A          184 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW  262 (375)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999985 89999998 9999999998753    2 334445  689999999999999965


Q ss_pred             cCCCccccc-HHHHHHHHHHHHHccCCCCCcEEEee-EEeC-CC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHH
Q 018265          264 TGAGSATLS-MAYAAAKFADACLRGLRGDAGVIECA-YVAS-TV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL  338 (358)
Q Consensus       264 ~gkg~t~~s-~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l  338 (358)
                         |+++|+ .|.++++.+.+|+++++ ++.++|++ +++| +|  ++++|||+||++|++|++++++.++|+++|+++|
T Consensus       263 ---G~ts~a~aa~~i~~~i~~~l~g~d-~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l~L~~~E~~~l  338 (375)
T 7mdh_A          263 ---GRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERI  338 (375)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHSCCC-TTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHH
T ss_pred             ---CCCchHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCCCCCHHHHHHH
Confidence               455553 44555666666665443 23599997 6799 68  5799999999999999999996349999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 018265          339 EKAKKELAGSIQKGVSFV  356 (358)
Q Consensus       339 ~~s~~~l~~~~~~~~~~~  356 (358)
                      ++|+++|+++.+.+..++
T Consensus       339 ~~Sa~~L~~e~~~~~~~~  356 (375)
T 7mdh_A          339 KKSEAELLAEKKCVAHLT  356 (375)
T ss_dssp             HHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998776655

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.1e-60  Score=456.72  Aligned_cols=297  Identities=22%  Similarity=0.374  Sum_probs=256.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +.+||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++||.|+.. ...++...  .+ +++++|||+||++
T Consensus         4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii~   79 (318)
T 1ez4_A            4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVIT   79 (318)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEEC
Confidence            3479999998 999999999999999899999999987  6788999998752 23344432  24 6889999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~  200 (358)
                      +|.|+++|++|.|++.+|++++++++++|+++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        80 ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~  155 (318)
T 1ez4_A           80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGSGTSLDSSRLR  155 (318)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH----HHHcCCCHHHEEeccccchHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    77889999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      +++|+++|+++++|+++||||||+ +++|+||++++..          .++++.++++.+++++++++|++   +||+++
T Consensus       156 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~  231 (318)
T 1ez4_A          156 VALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGATF  231 (318)
T ss_dssp             HHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HHSCCC
T ss_pred             HHHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhhee---CCCcch
Confidence            999999999999999999999998 9999999988642          25566788999999999999998   457899


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS  348 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~  348 (358)
                      |++|.++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|+++
T Consensus       232 ~~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~  307 (318)
T 1ez4_A          232 YGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKV  307 (318)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999864   488886 679998 34999999999999999999995 99999999999999999999


Q ss_pred             HHHhhhhhh
Q 018265          349 IQKGVSFVR  357 (358)
Q Consensus       349 ~~~~~~~~~  357 (358)
                      +++..++++
T Consensus       308 ~~~~~~~~~  316 (318)
T 1ez4_A          308 LNDGLAELE  316 (318)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999888765

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=2e-60  Score=458.84  Aligned_cols=303  Identities=23%  Similarity=0.331  Sum_probs=261.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~e-----l~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a  115 (358)
                      +++||+|+||+|+||+++++.|+.++++++     |+|+|+++    ++|+++||+|+.. +.+..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~-~~~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh-cccCCEEEcCCcHHHhCCC
Confidence            468999999889999999999999988887     99999974    5899999999753 2233332345667999999


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCe-EEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-ee
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA-IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM  193 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~  193 (358)
                      |+||++||.||++||+|.|++..|+++++++++++++++|++ |+|++|||+|++|+++    ++.++++|+++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~----~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH----HHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999987 7999999999998765    56665444455766 99


Q ss_pred             ccHHHHHHHHHHHhCCCCCCCceE-EEEecCCCcccccccccCC--CC-CC------ChhHH--HHHHHHHhcCcceeee
Q 018265          194 LDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKP--SC-SL------TPTEI--DYLTDRIQNGGTEVVE  261 (358)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v--~~-~~------~~~~~--~~l~~~v~~~~~~ii~  261 (358)
                      ||++||++++|+++|+++++|+++ ||||||+ ++||+||++++  .+ ++      .+++|  +++.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 5999999 99999999975  22 12      23334  5899999999999999


Q ss_pred             cccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeC-CC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHH
Q 018265          262 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVAS-TV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAG  337 (358)
Q Consensus       262 ~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~  337 (358)
                      .|  ++++.|++|.++++++++|++|+++ +.++||+ +++| +|  ++++|||+||++ ++|++++++.++|+++|+++
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~~il~~~~~-~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~  311 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVRDIWFGTPE-GEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREK  311 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHHHHHHCCCT-TCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCCCCCHHHHHH
T ss_pred             cc--CchHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHH
Confidence            75  3578999999999999999999753 2589998 5688 88  479999999999 99999999833999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhh
Q 018265          338 LEKAKKELAGSIQKGVSFVR  357 (358)
Q Consensus       338 l~~s~~~l~~~~~~~~~~~~  357 (358)
                      |++|++.|+++++++++|+.
T Consensus       312 l~~sa~~L~~~~~~~~~~l~  331 (333)
T 5mdh_A          312 MDLTAKELAEEKETAFEFLS  331 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999875

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=1.9e-59  Score=448.21  Aligned_cols=292  Identities=25%  Similarity=0.422  Sum_probs=264.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ||+|||| |+||+++++.++..++ +||+|+|+++  +++.++|+.|..    ....++.   ++|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999998 9999999999998888 8999999987  678899998863    1233443   3576 789999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~  200 (358)
                      +|.|+++|++|.|++.+|++++++++++++++||++|+|++|||+|++|+++    ++.+++|++||+|+ |.||+.|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVM----YKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    67789999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C----CChhHHHHHHHHHhcCcceeeecccCCC-cccccHH
Q 018265          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAG-SATLSMA  274 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg-~t~~s~A  274 (358)
                      +++|+++|+++++|+++||||||+ +++|+||++++.. +    +++++++++.+++++++++|++.   || +++||+|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITEL---RGYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH---HSSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhC---CCCccHHHHH
Confidence            999999999999999999999998 9999999998743 1    56778899999999999999984   57 8999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018265          275 YAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKG  352 (358)
Q Consensus       275 ~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  352 (358)
                      .++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|++++++.
T Consensus       227 ~a~~~~~~ai~~~~~---~v~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~  302 (308)
T 2d4a_B          227 AGLVLTVEAIKRDSK---RIYPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETL  302 (308)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhCCC---cEEEEEEEEcCccCCCceEEEEEEEEcCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588886 679988 57999999999999999999995 999999999999999999999988


Q ss_pred             hhhhh
Q 018265          353 VSFVR  357 (358)
Q Consensus       353 ~~~~~  357 (358)
                      ..+++
T Consensus       303 ~~~l~  307 (308)
T 2d4a_B          303 PPQLR  307 (308)
T ss_dssp             CHHHH
T ss_pred             HHHhc
Confidence            76664

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=2.6e-59  Score=447.67  Aligned_cols=290  Identities=22%  Similarity=0.357  Sum_probs=260.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++||.|+.. ...++...  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999998 999999999999999899999999987  6788999999752 12334332  35 588999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~  202 (358)
                      .|+++|++|.|++.+|++++++++++|+++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA----YALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764    67789999999999 99999999999


Q ss_pred             HHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------C--CChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------S--LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       203 lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~--~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      +|+++|+++++|+++||||||+ +++|+||++++..          .  ++++.++++.++++++++++++.   ||+++
T Consensus       153 la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEG---KGATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHH---HSCCC
T ss_pred             HHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhc---cCCcH
Confidence            9999999999999999999998 9999999987632          1  45667899999999999999984   57899


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS  348 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~  348 (358)
                      |++|.++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|+++
T Consensus       229 ~~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~  304 (310)
T 2xxj_A          229 YGIGAGLARLVRAILTDEK---GVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILKEA  304 (310)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---CEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   588886 679988 46899999999999999999995 99999999999999999999


Q ss_pred             HHHh
Q 018265          349 IQKG  352 (358)
Q Consensus       349 ~~~~  352 (358)
                      +++.
T Consensus       305 ~~~~  308 (310)
T 2xxj_A          305 AFAL  308 (310)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=7.7e-61  Score=459.33  Aligned_cols=281  Identities=21%  Similarity=0.276  Sum_probs=252.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +.+||+|||+ |.||+++++.++..+++++|+|+|+++  ++|+++||+|...+. ..+.. .++|+ ++++|||+||++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~t~d~-~~~~daDiVIit   96 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIV-SGKDY-SVSAGSKLVVIT   96 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEE-EESSS-CSCSSCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEE-EcCCH-HHhCCCCEEEEe
Confidence            4579999999 999999999999999989999999987  789999999974222 22222 24677 459999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~  200 (358)
                      +|.|+++||+|.|++.+|+++++++++++.++||++|++++|||+|++|+++    ++.++||++||||+ |.||+.|++
T Consensus        97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~----~k~sg~p~~rViG~gt~LDs~R~~  172 (330)
T 3ldh_A           97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD----WKLSGLPMHRIIGSGCNLDSARFR  172 (330)
T ss_dssp             CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEECCTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH----HHHhCCCHHHeecccCchhHHHHH
Confidence            9999999999999999999999999999999999999999999999998765    67779999999999 799999999


Q ss_pred             HHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHH-HHHHHHHhcCcceeeecccCCCcccccHHH----
Q 018265          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-DYLTDRIQNGGTEVVEAKTGAGSATLSMAY----  275 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~-~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~----  275 (358)
                      +++|+++|+++++|+++||||||+ +++|+||+          +| +++.++|+++|++|++.   ||+++||+|.    
T Consensus       173 ~~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~----------~~~~~~~~~v~~~g~eii~~---kg~t~~a~a~~~~~  238 (330)
T 3ldh_A          173 YLMGERLGVHSCLVIGWVIGQHGD-SVPSVWSG----------MWDAKLHKDVVDSAYEVIKL---KGYTSWAIGLVVSN  238 (330)
T ss_dssp             HHHHHHHTSCTTTCCEEECSSSST-TCCEEEEE----------EEETTEEHHHHHCCCTTSTT---CHHHHHHHHHTTHH
T ss_pred             HHHHHHhCCCHHHeEEEEEcCCCC-ceeeechh----------hHHHHHHHHHHHHHHHHHHc---cCCcceeeeeeccC
Confidence            999999999999999999999998 99999998          23 57888999999999995   4799999999    


Q ss_pred             -------------HHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEE--EccCCCCCHHHHHH
Q 018265          276 -------------AAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEE--IYSLGPLNEYERAG  337 (358)
Q Consensus       276 -------------ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~--i~~~~~L~~~E~~~  337 (358)
                                   ++++++++|++|++   .++|++ +++|+|  ++++|||+||++| +|+++  ++++ +|+++|+++
T Consensus       239 ~~~~~~~~~~~~~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~~-~L~~~E~~~  313 (330)
T 3ldh_A          239 PVDVLTYVAWKGCSVADLAQTIMKDLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVKM-KLKPDEEQQ  313 (330)
T ss_dssp             HHTTSSSCSCTHHHHHHHHHHHHHTCC---EEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCCC-CCCHHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHcCCC---ceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceecC-CCCHHHHHH
Confidence                         99999999999854   599997 679998  4699999999999 99999  9995 999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018265          338 LEKAKKELAGSIQK  351 (358)
Q Consensus       338 l~~s~~~l~~~~~~  351 (358)
                      |++|++.|++.++.
T Consensus       314 l~~s~~~l~~~~~~  327 (330)
T 3ldh_A          314 LQKSATTLWDIQKD  327 (330)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=8.1e-59  Score=445.73  Aligned_cols=294  Identities=23%  Similarity=0.377  Sum_probs=260.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      ++++||+|||| |+||+++++.|+.++++.||+|+|+++  +++.++|+.|....  ..++...  .+ +++++|||+||
T Consensus         4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVv   79 (317)
T 3d0o_A            4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVV   79 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEE
Confidence            45689999999 999999999999888888999999987  67888999886311  2334432  34 68899999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHH
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R  198 (358)
                      +++|.|+++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|
T Consensus        80 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~lD~~r  155 (317)
T 3d0o_A           80 ICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYAT----WKFSGLPKERVIGSGTILDSAR  155 (317)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHhCCCHHHEEecCccccHHH
Confidence            999999999999999999999999999999999999999999999999998654    77889999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeecccCCCc
Q 018265          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (358)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  268 (358)
                      +++++|+++|+++++|+++||||||+ +++|+||++++..          .++++.++++.+++++++++|++   +||+
T Consensus       156 ~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  231 (317)
T 3d0o_A          156 FRLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKGA  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH---HHSC
T ss_pred             HHHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe---CCCC
Confidence            99999999999999999999999998 9999999988642          14455678999999999999998   4579


Q ss_pred             ccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 018265          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA  346 (358)
Q Consensus       269 t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  346 (358)
                      ++|++|.++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       232 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  307 (317)
T 3d0o_A          232 TYYGVAMGLARITEAIFRNED---AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLK  307 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999854   588886 679998 34999999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 018265          347 GSIQKGV  353 (358)
Q Consensus       347 ~~~~~~~  353 (358)
                      +++++..
T Consensus       308 ~~~~~~~  314 (317)
T 3d0o_A          308 DIMAEAE  314 (317)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            9998654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=4.3e-58  Score=438.12  Aligned_cols=290  Identities=26%  Similarity=0.373  Sum_probs=260.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~--~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      |||+||||+|+||++++..|+.+++..|++|+|+  +.  +++.++|+.|... ...++...  .+ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999779999999999999888889999999  65  5677899988632 22334332  34 5889999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~  200 (358)
                      +|.++++|++|.+++.+|+++++++++++++++|++|++++|||+|++|++    +++.+++|++||+|+ |.||+.|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~----~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH----LYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH----HHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH----HHHHcCCCHHHeeecccchhHHHHH
Confidence            999999999999999999999999999999999999999999999999865    478889999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC--CC-ChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHH
Q 018265          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC--SL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAA  277 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~--~~-~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai  277 (358)
                      +++|+++|+++++|+++||||||+ +++|+||++++..  .+ ++++++++.+++++++++|++   +||+++||+|.++
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHh---cCCChHHHHHHHH
Confidence            999999999999999999999998 9999999987521  44 677899999999999999998   4689999999999


Q ss_pred             HHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018265          278 AKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK  351 (358)
Q Consensus       278 ~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~  351 (358)
                      ++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|++.+++
T Consensus       230 ~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  301 (303)
T 1o6z_A          230 AHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK  301 (303)
T ss_dssp             HHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC---CEEEEEEecCCccCCcceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999975   488886 679988 57899999999999999999995 99999999999999999999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.6e-58  Score=442.32  Aligned_cols=293  Identities=22%  Similarity=0.346  Sum_probs=252.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +++||+|||| |+||+++++.|+..++++||+|+|+++  ++|.++||.|... ...++...  ++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4579999998 999999999999999999999999987  6889999999752 23444432  45 5889999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~  200 (358)
                      +|.|+++|++|.|++.+|+++++++++.|.++||++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~----~k~s~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHcCCCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999998764    67789999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----C--------CChhHHHHHHHHHhcCcceeeecccCCCc
Q 018265          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S--------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~--------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  268 (358)
                      +++|+++|+++++|+++||||||+ +++|+||++++..    .        +.+++++++.++++++++++++   +||+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  233 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGA  233 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHH---HTSC
T ss_pred             HHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhh---CCCc
Confidence            999999999999999999999998 9999999987631    1        2334468999999999999998   4578


Q ss_pred             ccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 018265          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA  346 (358)
Q Consensus       269 t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  346 (358)
                      ++|++|.++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       234 t~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  309 (318)
T 1y6j_A          234 TYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVK  309 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999964   488886 679988 57899999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 018265          347 GSIQKGV  353 (358)
Q Consensus       347 ~~~~~~~  353 (358)
                      ++++++.
T Consensus       310 ~~~~~~~  316 (318)
T 1y6j_A          310 KVLNEVK  316 (318)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            9998754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=2.3e-57  Score=434.24  Aligned_cols=291  Identities=29%  Similarity=0.492  Sum_probs=253.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      |||+|||| |+||++++..++..+++ +|+|+|+++  +++.++|+.+..    ...+++.   ++|+ ++++|||+||+
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCC-eEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEEE
Confidence            69999999 99999999999999876 499999987  678889999863    1233443   3677 88999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      ++|.|+++|++|.|++.+|++++++++++++++||++|++++|||+|++|+++    ++.+++|++||+|+ |.||+.|+
T Consensus        77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~----~~~~~~~~~rviG~gt~LD~~r~  152 (309)
T 1ur5_A           77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIGQAGVLDAARY  152 (309)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH----HHHcCCCHHHEEECCcchHHHHH
Confidence            99999999999999999999999999999999999999999999999998654    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-----CCChhHHHHHHHHHhcCcceeeecccCCCcccccHH
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA  274 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A  274 (358)
                      ++++|+++|+++++|+++||||||+ +++|+||++++..     .+++++++++.+++++++++|++. .+||+++||+|
T Consensus       153 ~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~a  230 (309)
T 1ur5_A          153 RTFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAPA  230 (309)
T ss_dssp             HHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHHH
T ss_pred             HHHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHHH
Confidence            9999999999999999999999998 9999999988642     246778999999999999999985 24679999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018265          275 YAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKG  352 (358)
Q Consensus       275 ~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  352 (358)
                      .++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|++++++.
T Consensus       231 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  306 (309)
T 1ur5_A          231 AATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDTL  306 (309)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588886 679988 57999999999999999999995 999999999999999999999875


Q ss_pred             h
Q 018265          353 V  353 (358)
Q Consensus       353 ~  353 (358)
                      .
T Consensus       307 ~  307 (309)
T 1ur5_A          307 K  307 (309)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=3e-57  Score=434.14  Aligned_cols=294  Identities=25%  Similarity=0.407  Sum_probs=255.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CC--chhHHHHHhcCCC-C-CeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~--~~--~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      |||+||||+|+||+++++.|+.+++..|++|+|+  +.  +.+.++|+.|... . ..++....+.+++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            6999999999999999999999888889999999  65  5788899987531 1 223332211125789999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      ++|.|+++|++|.+++.+|++++++++++++++| ++|++++|||+|++|+++    ++.+++|++|+||+ |.||+.|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA----LVDSKFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH----HHHHCCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH----HHhhCcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999998764    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----C---CChhHHHHHHHHHhcCcceeeecccCCCccccc
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS  272 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~---~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s  272 (358)
                      ++++|+++|+++++|+++||||||+ +++|+||++++..    .   +++++++++.+++++++++|++   +||+++||
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcHHH
Confidence            9999999999999999999999998 9999999988742    2   2566689999999999999998   45799999


Q ss_pred             HHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-C-CccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          273 MAYAAAKFADACLRGLRGDAGVIECA-YVASTV-T-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       273 ~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~-~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      +|.++++++++|++|++   .+++++ +++|+| . +++|||+||++|++|+++++++ +|+++|+++|++|++.|++++
T Consensus       232 ~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  307 (313)
T 1hye_A          232 PAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYC  307 (313)
T ss_dssp             HHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC---eEEEEEEeecceecCccceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999864   478886 679988 2 5999999999999999999995 999999999999999999999


Q ss_pred             HHhh
Q 018265          350 QKGV  353 (358)
Q Consensus       350 ~~~~  353 (358)
                      ++..
T Consensus       308 ~~~~  311 (313)
T 1hye_A          308 EEVK  311 (313)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=1.8e-57  Score=436.31  Aligned_cols=293  Identities=22%  Similarity=0.359  Sum_probs=260.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      +++||+|||+ |.||+++++.++..++.++|+|+|+++  +++.++|+.|....  ..++...  .+ +++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEEE
Confidence            4579999999 999999999999888888999999987  67788999885421  2344432  34 588999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      +++.++++|++|.+++.+|+++++++++++++++|++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~----~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH----HHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----C-------CChhHHHHHHHHHhcCcceeeecccCCCc
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S-------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~-------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  268 (358)
                      ++++|+++|+++++|+++||||||+ +++|+||++++..    .       +.+++++++.+++++++++|++.   ||+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~  232 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEK---KGA  232 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHH---HSC
T ss_pred             HHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhc---cCC
Confidence            9999999999999999999999998 9999999987631    1       33455789999999999999984   578


Q ss_pred             ccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 018265          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA  346 (358)
Q Consensus       269 t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  346 (358)
                      ++|++|.++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       233 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  308 (316)
T 1ldn_A          233 TYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLK  308 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999854   588886 679998 57999999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 018265          347 GSIQKGV  353 (358)
Q Consensus       347 ~~~~~~~  353 (358)
                      +.+++.+
T Consensus       309 ~~~~~~~  315 (316)
T 1ldn_A          309 SVLARAF  315 (316)
T ss_dssp             HHHHHSC
T ss_pred             HHHHHHh
Confidence            9998763

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=3.5e-57  Score=431.28  Aligned_cols=283  Identities=18%  Similarity=0.247  Sum_probs=246.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      ++||+|||| |+||+++++.++..+++++|+|+|+++ +.+.++|+.+... +.++.   ++|+ ++++|||+||+++|.
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~-~~i~~---t~d~-~~l~~aD~Vi~aag~   87 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL-PNVEI---SKDL-SASAHSKVVIFTVNS   87 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC-TTEEE---ESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC-CCeEE---eCCH-HHHCCCCEEEEcCCC
Confidence            479999998 999999999999999889999999987 7788899998543 45654   3577 889999999999999


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHH
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFV  203 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~l  203 (358)
                      + ++||+|.|++.+|++++++++++++++||++|+|++|||+|++|++    +++.+++|++||||+ |.||+.|+++++
T Consensus        88 ~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~----~~~~~~~p~~rviG~gt~Ld~~R~~~~l  162 (303)
T 2i6t_A           88 L-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYV----TWKLSTFPANRVIGIGCNLDSQRLQYII  162 (303)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHHHHH
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHH----HHHhcCCCHHHeeCCCCCchHHHHHHHH
Confidence            6 7999999999999999999999999999999999999999999765    477889999999999 999999999999


Q ss_pred             HHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCcccccHHHHHHHHHHH
Q 018265          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA  283 (358)
Q Consensus       204 A~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ai~~ii~a  283 (358)
                      |+++|+++++|+++|||+||+ +++|+||+...   +   ..+++.+++++++++|++   +||+++||+|.++++++++
T Consensus       163 a~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~~a  232 (303)
T 2i6t_A          163 TNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQEE---V---VSHTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMVDS  232 (303)
T ss_dssp             HHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCChHHeEEEEecCCCC-Ccccccccccc---c---cHHHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHHHH
Confidence            999999999999999999998 89999999631   2   124677788899999988   5689999999999999999


Q ss_pred             HHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018265          284 CLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKG  352 (358)
Q Consensus       284 i~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  352 (358)
                      |++|++   .+++++ +++|+|  ++++|||+||++|++|+++++++++|+++|+++|++|++.|++++++.
T Consensus       233 i~~~~~---~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~~  301 (303)
T 2i6t_A          233 IVNNKK---KVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQL  301 (303)
T ss_dssp             HHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCC---cEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999875   488886 678988  579999999999999999998865899999999999999999998754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=1.2e-55  Score=424.35  Aligned_cols=291  Identities=29%  Similarity=0.483  Sum_probs=259.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      +++||+|||| |++|+.++..|+..+++ +|+|+|+++  +++.++|+.+..    ...+++.   ++|+ ++++|||+|
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~-~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~V   76 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLG-DVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVV   76 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEE
Confidence            3579999998 99999999999999886 499999988  677788888752    1233443   4677 889999999


Q ss_pred             EEcCCCCCCCCCC-----HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-e
Q 018265          119 IIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T  192 (358)
Q Consensus       119 Ii~ag~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t  192 (358)
                      |+++|.|+++|++     |.|++.+|++++++++++|+++||++|+|++|||++++|+++    ++.++||++||+|+ |
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~----~~~~g~~~~rviG~gt  152 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGLGG  152 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECCH
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH----HHhcCCChHHEEeccC
Confidence            9999999999999     999999999999999999999999999999999999997664    66679999999999 6


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeec
Q 018265          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEA  262 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~  262 (358)
                      .||++|+++++|+++|+++++|+++||||||+ +++|+||++++..          .+++++++++.+++++++++|++.
T Consensus       153 ~ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~  231 (322)
T 1t2d_A          153 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL  231 (322)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999998 9999999987631          146667889999999999999995


Q ss_pred             ccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHH
Q 018265          263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK  340 (358)
Q Consensus       263 ~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~  340 (358)
                         ||+++||+|.++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++
T Consensus       232 ---kgs~~~~~a~a~~~~~~ai~~~~~---~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~  304 (322)
T 1t2d_A          232 ---HASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  304 (322)
T ss_dssp             ---TSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             ---cCchHHHHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCCC-CCCHHHHHHHHH
Confidence               478999999999999999999864   588886 679998 57999999999999999999995 999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 018265          341 AKKELAGSIQKGV  353 (358)
Q Consensus       341 s~~~l~~~~~~~~  353 (358)
                      |++.|+++++.+-
T Consensus       305 s~~~L~~~~~~~~  317 (322)
T 1t2d_A          305 AIAETKRMKALAH  317 (322)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988763

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=3.9e-55  Score=421.98  Aligned_cols=292  Identities=32%  Similarity=0.533  Sum_probs=259.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      ++||+|||| |.+|++++..++..+++ +|+|+|+++  +++.++|+.+...    ..+++.   ++|+ ++++|||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEEE
Confidence            479999998 99999999999999885 599999988  5666778776531    233443   4677 8899999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHH
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R  198 (358)
                      +++|.|+++|++|.|++.+|++++++++++|.++||++|+|++|||++++|+++    ++.++||++||+|+ |.||++|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~----~~~~~~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYF----KEKSGIPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHhcCCChhhEEEeCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999997654    67789999999999 5999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeecccCCCc
Q 018265          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (358)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  268 (358)
                      +++++|+++|+++++|+++|||+||+ +++|+||++++.+          .+++++++++.++++++|+++++.. ++|+
T Consensus       164 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs  241 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGS  241 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCc
Confidence            99999999999999999999999998 9999999987632          1466678899999999999999864 5789


Q ss_pred             ccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 018265          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA  346 (358)
Q Consensus       269 t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  346 (358)
                      ++||+|.++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++.+ +|+++|+++|++|++.|+
T Consensus       242 ~~~~~a~a~~~i~~ai~~~~~---~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  317 (328)
T 2hjr_A          242 AFYAPAASAVAMAQAYLKDSK---SVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQ  317 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999865   588886 679998 57999999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 018265          347 GSIQKGV  353 (358)
Q Consensus       347 ~~~~~~~  353 (358)
                      +.++++.
T Consensus       318 ~~~~~~~  324 (328)
T 2hjr_A          318 NLVQDLK  324 (328)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=5.4e-55  Score=421.42  Aligned_cols=294  Identities=31%  Similarity=0.522  Sum_probs=259.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCcHHhhhCCCCE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDi  117 (358)
                      +++|||+|||| |.+|++++..|+..++. +|+|+|+++  +++.++|+.+..    ...+++.   ++|++++++|||+
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~aDi   81 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADC   81 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCCCE
Confidence            34579999998 99999999999998875 599999988  566677777642    1234443   4688879999999


Q ss_pred             EEEcCCCCCCCCC-----CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-
Q 018265          118 VIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-  191 (358)
Q Consensus       118 VIi~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-  191 (358)
                      ||+++|.|+++|+     +|.+++.+|++++++++++|+++||++|+|++|||++++|+++    ++.+++|++||+|+ 
T Consensus        82 Vi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~----~~~~~~~~~rviG~g  157 (331)
T 1pzg_A           82 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGMA  157 (331)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECC
T ss_pred             EEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH----HHhcCCChhcEEecc
Confidence            9999999999999     9999999999999999999999999999999999999997654    66789999999999 


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVE  261 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~  261 (358)
                      |.||+.|+++++|+++|+++++|+++|||+||+ +++|+||++++..          .+++++++++.++++++|++|++
T Consensus       158 t~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~  236 (331)
T 1pzg_A          158 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR  236 (331)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHH
Confidence            699999999999999999999999999999998 9999999987632          14566678899999999999998


Q ss_pred             cccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          262 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       262 ~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                      .. ++|+++||+|.++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++.+ +|+++|+++|+
T Consensus       237 ~~-~kgst~~~~a~a~~~ii~ai~~~~~---~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~  311 (331)
T 1pzg_A          237 FL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQ  311 (331)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             hh-cCCCccchHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHH
Confidence            52 4679999999999999999999864   588886 679988 57999999999999999999995 99999999999


Q ss_pred             HHHHHHHHHHHHh
Q 018265          340 KAKKELAGSIQKG  352 (358)
Q Consensus       340 ~s~~~l~~~~~~~  352 (358)
                      +|++.|++.+++.
T Consensus       312 ~s~~~l~~~~~~~  324 (331)
T 1pzg_A          312 KSVDDVMALNKAV  324 (331)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999865

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=6.3e-55  Score=420.79  Aligned_cols=300  Identities=22%  Similarity=0.287  Sum_probs=258.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC----C--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV----N--TPGVTADISHMDTNAVVRGFLGQQQLEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~----~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~  113 (358)
                      ++|||+||||+|+||+++++.|+..++.     .+|+|+|++    +  +.+.++||.|..... ...+..++|++++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence            4689999998899999999999988765     499999998    4  578899999964211 222223468889999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~-~~p~~kviG~  191 (358)
                      |||+||+++|.++++|++|.+++.+|++++++++++++++| |++|+|++|||+|++|+++    ++.+ +||++|++|+
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~----~~~~~~~p~~~v~g~  158 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA----MKSAPSLPAKNFTAM  158 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH----HHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999997 9999999999999998765    5666 9999999999


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCce-EEEEecCCCcccccccccCCCC-C----CChhH--HHHHHHHHhcCcceeeecc
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEAK  263 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~ii~~~  263 (358)
                      |.||+.|+++++|+++|+++++|+. +|||+||+ +++|+||++++.. +    +++++  .+++.+++++++++|++.|
T Consensus       159 t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k  237 (329)
T 1b8p_A          159 LRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR  237 (329)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred             ecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999985 68999998 8999999998743 1    23334  3789999999999999976


Q ss_pred             cCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEcc-CCCCCHHHHHHHH
Q 018265          264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYS-LGPLNEYERAGLE  339 (358)
Q Consensus       264 ~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~-~~~L~~~E~~~l~  339 (358)
                       |. +++++.|.++++++++|+++..  +.+++++ +++|+|  ++++|||+||++ ++|++++++ + +|+++|+++|+
T Consensus       238 -g~-~~~~~~a~a~~~~~~ai~~~~~--~~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~-~l~~~e~~~l~  311 (329)
T 1b8p_A          238 -GV-SSAASAANAAIDHIHDWVLGTA--GKWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGL-SIDAFSQERIN  311 (329)
T ss_dssp             -SS-CCHHHHHHHHHHHHHHHHHCCT--TCCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCC-CCCHHHHHHHH
T ss_pred             -CC-ChHHHHHHHHHHHHHHHhcCCC--CcEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCC-CCCHHHHHHHH
Confidence             32 3344467789999999999842  2488887 568988  689999999999 999999998 6 99999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 018265          340 KAKKELAGSIQKGVSFV  356 (358)
Q Consensus       340 ~s~~~l~~~~~~~~~~~  356 (358)
                      +|++.|+++++.+.+++
T Consensus       312 ~s~~~l~~~~~~~~~~~  328 (329)
T 1b8p_A          312 VTLNELLEEQNGVQHLL  328 (329)
T ss_dssp             HHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999998876

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=4.5e-54  Score=411.61  Aligned_cols=294  Identities=32%  Similarity=0.514  Sum_probs=259.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      |||+|||+ |.+|++++..|+..+...+|+|+|+++  .++..+|+.+..    ....+..   ++|++ ++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~-~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDYA-DTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCGG-GGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCHH-HHCCCCEEEE
Confidence            69999998 999999999999876566999999987  567777887752    1223443   35774 4999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~  199 (358)
                      +++.|+++|++|.|++.+|+++++++++.|++++|+++++++|||++++++++    ++.+++|++|++|+ |.||+.|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~----~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHH----HHhcCCChHHEEECCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999997654    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C----CChhHHHHHHHHHhcCcceeeecccCCCcccccHH
Q 018265          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA  274 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A  274 (358)
                      ++++|+++|+++++|+++|||+||+ +++|+||++++.. +    +++++++++.+++++++++|++. .+||+++||+|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            9999999999999999999999997 9999999998743 1    56778899999999999999985 24689999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018265          275 YAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKG  352 (358)
Q Consensus       275 ~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  352 (358)
                      .++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|+++++++
T Consensus       230 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  305 (310)
T 1guz_A          230 SSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKML  305 (310)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588886 679988 47999999999999999999995 999999999999999999999876


Q ss_pred             hhh
Q 018265          353 VSF  355 (358)
Q Consensus       353 ~~~  355 (358)
                      ...
T Consensus       306 ~~~  308 (310)
T 1guz_A          306 EST  308 (310)
T ss_dssp             ---
T ss_pred             hhh
Confidence            543

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=7.7e-54  Score=408.92  Aligned_cols=285  Identities=25%  Similarity=0.333  Sum_probs=228.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||+|||| |.+|++++..|+..++.++|+|+|+++  +.+.++|+.+... ....+...  +|+ ++++|||+||++++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~~-~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GGH-SELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--ECG-GGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CCH-HHhCCCCEEEEcCC
Confidence            69999998 999999999999999888999999987  5678899987642 12333322  354 78999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~  202 (358)
                      .|+++|++|.|++.+|+++++++++++.+++|++|++++|||++++++++    ++.+  |++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~----~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLA----TQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHH----HHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH----HHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999997654    5554  89999999 99999999999


Q ss_pred             HHHHhCCCCCCCceEEEEecCCCcccccccccCCCCC------------CChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       203 lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~------------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      +|+++|+++++|+++||||||+ +++|+||++++...            ++++.++++.+++++++++|++   +||+++
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~---~kg~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---ccCCcH
Confidence            9999999999999999999998 99999999987421            4566788999999999999999   468999


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      |++|.++++++++|++|++   .++|++ +++| |.  +|||+||++|++|+++++++ +|+++|+++|++|++.|++++
T Consensus       227 ~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g-yg--~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  299 (304)
T 2v6b_A          227 YGIGAALARITEAVLRDRR---AVLTVSAPTPE-YG--VSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRGFK  299 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEETT-TT--EEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhCCC---cEEEEEEEECC-cC--cEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   588887 6789 84  99999999999999999995 999999999999999999988


Q ss_pred             HHh
Q 018265          350 QKG  352 (358)
Q Consensus       350 ~~~  352 (358)
                      ++.
T Consensus       300 ~~~  302 (304)
T 2v6b_A          300 QQL  302 (304)
T ss_dssp             ---
T ss_pred             HHh
Confidence            754

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=7.1e-51  Score=390.92  Aligned_cols=291  Identities=27%  Similarity=0.453  Sum_probs=254.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||+|||+ |.+|++++..|+..++.++|+|+|+++  +.+...|+.+... ....+...  +|+ +++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~d~-~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GDY-ADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe--CCH-HHhCCCCEEEEccC
Confidence            69999998 999999999999888778999999986  4555666655321 11222222  364 78999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~~~  202 (358)
                      .++++|++|.|++.+|+++++++++.|++++|++++|++|||++++++++    ++.+++|++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHH----HHHhCCChhhEEeeCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997654    56668999999999 79999999999


Q ss_pred             HHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------C-CChhHHHHHHHHHhcCcceeeecccCCCcccc
Q 018265          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------S-LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL  271 (358)
Q Consensus       203 lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~-~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~  271 (358)
                      +|+++|+++++|+++|||+||+ +++|+||++++..          . ++++.++++.++++++++++++.   ||+++|
T Consensus       153 la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~~~~  228 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIER---KGATHY  228 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH---HSCCCH
T ss_pred             HHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhcc---CCchHH
Confidence            9999999999999999999998 8999999987632          1 45666889999999999999984   578999


Q ss_pred             cHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          272 SMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       272 s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      ++|.++++++++|++|.+   .+++++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       229 ~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~  304 (319)
T 1a5z_A          229 AIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAI  304 (319)
T ss_dssp             HHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCccceEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999854   588887 678988 47899999999999999999995 999999999999999999999


Q ss_pred             HHhh
Q 018265          350 QKGV  353 (358)
Q Consensus       350 ~~~~  353 (358)
                      +++.
T Consensus       305 ~~~~  308 (319)
T 1a5z_A          305 NEIT  308 (319)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8763

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.7e-49  Score=378.18  Aligned_cols=289  Identities=20%  Similarity=0.293  Sum_probs=247.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||+ |.+|++++..|+..++..+|+|+|+++  +.+.+.|+.+...  ...++..  ++|+ +++++||+||+++
T Consensus         2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~d~-~~~~~aDvViiav   77 (309)
T 1hyh_A            2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVISTL   77 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE--eCCH-HHhCCCCEEEEec
Confidence            69999998 999999999999888656999999986  4566667665421  1223332  2466 8899999999999


Q ss_pred             CCCCC----CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHH
Q 018265          123 GVPRK----PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV  197 (358)
Q Consensus       123 g~~~~----~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~  197 (358)
                      +.+++    +|++|.|++.+|+++++++++.+.+++|+++++++|||+++++++    +++.+++|+.|++|+ |.+|+.
T Consensus        78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~----~~~~~~~~~~rvig~gt~ld~~  153 (309)
T 1hyh_A           78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITAL----FQHVTGFPAHKVIGTGTLLDTA  153 (309)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHH
T ss_pred             CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHH----HHHhcCCCHHHEeecCccchHH
Confidence            99988    999999999999999999999999999999999999999998765    467789999999999 999999


Q ss_pred             HHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----C---CChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       198 R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~---~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      |++..+++.+++++++++++++|+||+ +++|+||++.+..    .   +++++|+++.++++++++++++.|   |+++
T Consensus       154 r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~~~  229 (309)
T 1hyh_A          154 RMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYTS  229 (309)
T ss_dssp             HHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH---SSCC
T ss_pred             HHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhcc---CCch
Confidence            999999999999999999999999998 8999999987642    1   456678999999999999999854   7899


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      |++|.++++++++|++|++   .+++++ +++|   +++++|+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       230 ~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g---~~~~~~vP~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  302 (309)
T 1hyh_A          230 YGVATSAIRIAKAVMADAH---AELVVSNRRDD---MGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRF  302 (309)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEECTT---TCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEEECC---CCeEEEEEEEEeCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875   488886 6677   7999999999999999999995 999999999999999999999


Q ss_pred             HHhhh
Q 018265          350 QKGVS  354 (358)
Q Consensus       350 ~~~~~  354 (358)
                      ++..+
T Consensus       303 ~~~~~  307 (309)
T 1hyh_A          303 DEIVD  307 (309)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            88764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=2.9e-48  Score=372.29  Aligned_cols=292  Identities=29%  Similarity=0.473  Sum_probs=255.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      ++||+|||| |.+|+.++..|+..++. +|+|+|+++  +.+..+|+.+..    ....+..   ++|+ +++++||+||
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDiVi   77 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDVVI   77 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEE
Confidence            579999998 99999999999988864 699999987  455566666542    1223443   3577 8899999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHH
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R  198 (358)
                      +++|.|+++|++|.|++.+|++++++++++|++++|+++++++|||++++++.+    ++.+++|++||+|+ |.+|+.|
T Consensus        78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r  153 (317)
T 2ewd_A           78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHF----QKVSGLPHNKVCGMAGVLDSSR  153 (317)
T ss_dssp             ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHHH
T ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH----HHhhCCCHHHEEeccCcHHHHH
Confidence            999999999999999999999999999999999999999999999999997654    56778999999999 6999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeecccCCCc
Q 018265          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (358)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  268 (358)
                      ++.++|+++|+++++++++|+|+||+ +++|+||.+++..          .++.++++++.+.++.+++++++.. |+|+
T Consensus       154 ~~~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~  231 (317)
T 2ewd_A          154 FRTFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGT  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCc
Confidence            99999999999999999999999998 8999999986532          1466778888888888999998864 5789


Q ss_pred             ccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 018265          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA  346 (358)
Q Consensus       269 t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  346 (358)
                      ++|++|.++++++++|++|++   .++|++ +++|+| .+++|+|+||++|++|+++++.+ +|+++|+++|++|++.|+
T Consensus       232 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  307 (317)
T 2ewd_A          232 AYFAPAAAAVKMAEAYLKDKK---AVVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILEL-DLTPLEQKLLGESINEVN  307 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSSTTCSSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---eEEEEEEEecCccCCcceEEEeEEEEcCCeeEEecCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999864   588886 678988 57999999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 018265          347 GSIQKGV  353 (358)
Q Consensus       347 ~~~~~~~  353 (358)
                      +.+++..
T Consensus       308 ~~~~~~~  314 (317)
T 2ewd_A          308 TISKVLD  314 (317)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998753

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=3.2e-46  Score=359.50  Aligned_cols=301  Identities=23%  Similarity=0.338  Sum_probs=252.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a  115 (358)
                      ++|||+|+||+|+||++++..|+..+..     .+|+++|++.    ..+.++|+.|... +.+..+..+.+++++++|+
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~-~~~~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccc-cccCCeEeccChHHHhCCC
Confidence            3589999999999999999999988764     4999999874    4567789987632 1122222235678999999


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEeee
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGVTM  193 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~-~~p~~kviG~t~  193 (358)
                      |+||++||.+++++++|.+++..|+.+++++++++++++ |+++++++|||+|.++++.    ++.+ ++|+.+++|.|.
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~----~~~~~~~~p~~~yg~tk  157 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA----YKNAPGLNPRNFTAMTR  157 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH----HHHcCCCChhheeccch
Confidence            999999999999999999999999999999999999998 9999999999999887654    4555 789999999999


Q ss_pred             ccHHHHHHHHHHHhCCCCCCCc-eEEEEecCCCcccccccccCCCC----CC-ChhH-HHHHHHHHhcCcceeeecccCC
Q 018265          194 LDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC----SL-TPTE-IDYLTDRIQNGGTEVVEAKTGA  266 (358)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~----~~-~~~~-~~~l~~~v~~~~~~ii~~~~gk  266 (358)
                      +|+.|+...+++++|+++..++ .+|||+|++ +++|.|+++.+..    .+ +++. ++++.++++++|++|++.| | 
T Consensus       158 l~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g-  234 (327)
T 1y7t_A          158 LDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G-  234 (327)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-S-
T ss_pred             HHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-C-
Confidence            9999999999999999999998 579999998 8999999886632    12 3222 4789999999999999976 3 


Q ss_pred             CcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHH
Q 018265          267 GSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK  343 (358)
Q Consensus       267 g~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~  343 (358)
                      +++++++|.++++++++|++|++ ++.+++++ +++|+|  ++++|||+||++ ++|++++++.++|+++|+++|++|++
T Consensus       235 ~~~~~~~a~a~~~~~~~i~~~~~-~~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~~l~~~e~~~l~~s~~  312 (327)
T 1y7t_A          235 ASSAASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGLEINEFARKRMEITAQ  312 (327)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCCCCCHHHHHHHHHHHH
Confidence            23344678899999999999963 12488887 568988  689999999999 99999998834999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 018265          344 ELAGSIQKGVSF  355 (358)
Q Consensus       344 ~l~~~~~~~~~~  355 (358)
                      .|+++++.+.++
T Consensus       313 ~l~~~~~~~~~~  324 (327)
T 1y7t_A          313 ELLDEMEQVKAL  324 (327)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999887653

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=1.3e-43  Score=350.98  Aligned_cols=288  Identities=13%  Similarity=0.103  Sum_probs=225.5

Q ss_pred             CCEEEEEcCCCchHHHH--HHHHHh--CCC-CcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           46 GFKVAVLGAAGGIGQPL--AMLMKI--NPL-VSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~--a~~l~~--~~~-~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      ++||+|||| |++ .+.  +..|+.  .++ .+||+|+|+++  +++ +.|+.+.......+.. .++|+++|++|||||
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~~~v~-~t~d~~~al~~AD~V   77 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDRFKVL-ISDTFEGAVVDAKYV   77 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTSSEEE-ECSSHHHHHTTCSEE
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCCeEEE-EeCCHHHHhCCCCEE
Confidence            579999999 776 333  234455  666 88999999987  232 5555442111113332 357888999999999


Q ss_pred             EEcCCCCCCCCCCHH--------------------hHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          119 IIPAGVPRKPGMTRD--------------------DLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~--------------------~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                      |+++|.++++|++|.                    .++.+|++++++++++|+++| |||+||+|||+|++|+++    +
T Consensus        78 iitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a~----~  152 (417)
T 1up7_A           78 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEFV----R  152 (417)
T ss_dssp             EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHHH----H
T ss_pred             EEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHHH----H
Confidence            999999888877773                    246999999999999999999 999999999999997654    6


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE-----------ecCCCccccccccc---CCCC----CC
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-----------GHAGVTILPLLSQV---KPSC----SL  240 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G-----------~hg~~~~vp~~s~~---~v~~----~~  240 (358)
                      +.+  |++||||+|+.. .|+++.+|+.+|+++++|+++++|           +||+ +++|.||..   ++.+    ++
T Consensus       153 k~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~~~  228 (417)
T 1up7_A          153 NYL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDEDF  228 (417)
T ss_dssp             HTT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTTSC
T ss_pred             HhC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCCch
Confidence            764  778999998654 499999999999999999999999           9998 899999985   3311    22


Q ss_pred             ---------------------ChhHHHHH---------HHHHhcCcceee--------ecccCCCcccccHHHHHHHHHH
Q 018265          241 ---------------------TPTEIDYL---------TDRIQNGGTEVV--------EAKTGAGSATLSMAYAAAKFAD  282 (358)
Q Consensus       241 ---------------------~~~~~~~l---------~~~v~~~~~~ii--------~~~~gkg~t~~s~A~ai~~ii~  282 (358)
                                           +++.++++         .+++++.+++++        ++ .++|++.|  +.+++++++
T Consensus       229 ~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l-~~kg~t~~--~~~a~~ii~  305 (417)
T 1up7_A          229 PTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEEL-TKRGGSMY--STAAAHLIR  305 (417)
T ss_dssp             CHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGG-GGSTTTTH--HHHHHHHHH
T ss_pred             HHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhh-hhcCCcHH--HHHHHHHHH
Confidence                                 12333444         456667677777        22 13566644  789999999


Q ss_pred             HHHccCCCCCcEEEee-EEeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 018265          283 ACLRGLRGDAGVIECA-YVASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV  353 (358)
Q Consensus       283 ai~~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  353 (358)
                      ||++|++   .+++++ +++|.|   |+|+++|+||+||++|++++.. ++|+++|+++++.++...+..++.++
T Consensus       306 AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~-~~L~~~e~~~l~~~~~~e~l~veA~~  376 (417)
T 1up7_A          306 DLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIHAVKMYERLTIEAYL  376 (417)
T ss_dssp             HHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCC---eEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeec-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999965   588887 568877   5899999999999999999999 49999999999999999998887764

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=2.2e-42  Score=345.14  Aligned_cols=292  Identities=14%  Similarity=0.145  Sum_probs=225.5

Q ss_pred             CCEEEEEcCCCch-HHHHHHHHHh--CCC-CcEEEEEeCCC--chhH-HHHHh-----cCCCCCeEEEEeCCCcHHhhhC
Q 018265           46 GFKVAVLGAAGGI-GQPLAMLMKI--NPL-VSVLHLYDVVN--TPGV-TADIS-----HMDTNAVVRGFLGQQQLEDALT  113 (358)
Q Consensus        46 ~~KI~IiGa~G~v-G~~~a~~l~~--~~~-~~el~L~D~~~--~~g~-~~dl~-----~~~~~~~v~~~~~t~d~~~al~  113 (358)
                      ++||+|||| |++ |..++..|+.  .++ ..||+|+|+++  .+.. ..|+.     +......++.   ++|+++|++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            479999999 888 7777766766  566 78999999976  3211 12222     2222234443   468889999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHh--------------------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHH
Q 018265          114 GMDIVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA  173 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~--------------------~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~  173 (358)
                      |||+||+++|.++++|++|.+                    ++.+|++++++++++|+++|||||+|++|||+|++|+++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~  162 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV  162 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            999999999998888877764                    489999999999999999999999999999999997654


Q ss_pred             HHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE-----------ecCCCcccccccccCCC-----
Q 018265          174 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-----------GHAGVTILPLLSQVKPS-----  237 (358)
Q Consensus       174 ~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G-----------~hg~~~~vp~~s~~~v~-----  237 (358)
                          ++.+  |.+||||+|+.. .|+++.+|+.+|+++++|+++++|           +||+ +++|.|+.....     
T Consensus       163 ----~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          163 ----LRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             ----HHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHSCC----
T ss_pred             ----HHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHHHhhhcccc
Confidence                6764  778999998765 499999999999999999999999           9998 899999873221     


Q ss_pred             --------CCC---------------------ChhHH-------------HHHHHHHhcCcceee-----ecccC--CCc
Q 018265          238 --------CSL---------------------TPTEI-------------DYLTDRIQNGGTEVV-----EAKTG--AGS  268 (358)
Q Consensus       238 --------~~~---------------------~~~~~-------------~~l~~~v~~~~~~ii-----~~~~g--kg~  268 (358)
                              .++                     +++.+             .++.+++++.+++++     +.+.-  .+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~  314 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKR  314 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------C
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcc
Confidence                    011                     12211             244566777788888     32210  013


Q ss_pred             ccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHH
Q 018265          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE  344 (358)
Q Consensus       269 t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  344 (358)
                      +.+++|.+++++++||++|++   .+++++ +++|.|   |+|+++|+||+||++|++++... +|+++|+++++.++..
T Consensus       315 ~~~~~~~~a~~ii~AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~-~L~~~e~~l~~~~~~~  390 (450)
T 1s6y_A          315 GGAYYSDAACSLISSIYNDKR---DIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVG-DLPVAVRGLVQQIKSF  390 (450)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCC---CEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcCCC---eEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecC-CCCHHHHHHHHHHHHH
Confidence            345677999999999999975   488887 568877   58999999999999999999995 9999999999999877


Q ss_pred             HHHHHHHhh
Q 018265          345 LAGSIQKGV  353 (358)
Q Consensus       345 l~~~~~~~~  353 (358)
                      =+-.++.++
T Consensus       391 e~l~veAa~  399 (450)
T 1s6y_A          391 ERVAAEAAV  399 (450)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665543

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=1.5e-41  Score=325.10  Aligned_cols=293  Identities=22%  Similarity=0.366  Sum_probs=249.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ++|||+|||| |.+|+.++..|+..+..++|+|+|+++  ..+.++|+.+... ....+.. .++|+ +++++||+||++
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~aD~Vii~   82 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID-GSDDP-EICRDADMVVIT   82 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE-EESCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEE-eCCCH-HHhCCCCEEEEC
Confidence            3589999998 999999999999988878999999986  4455677766532 1122222 12354 789999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~lds~R~~  200 (358)
                      ++.++++|++|.+++.+|+++++++++.+.+++|+++|++++||++.++++.    ++.+++|+++|+|. |.+|+.|++
T Consensus        83 v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~----~~~~~~~~~~vig~~~~l~~~r~~  158 (319)
T 1lld_A           83 AGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGSGTNLDSARLR  158 (319)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHH----HHhcCCCHHHEeeccccHhHHHHH
Confidence            9999999999999999999999999999999999999999999999997654    55668999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-----------C--CChhHHHHHHHHHhcCcceeeecccCCC
Q 018265          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------S--LTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~--~~~~~~~~l~~~v~~~~~~ii~~~~gkg  267 (358)
                      ..+++++++++.+++.+++|+|++ +++|.|+.+.+..           .  .+++.++++.+++++.+++|++.   +|
T Consensus       159 ~~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~---~G  234 (319)
T 1lld_A          159 FLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIING---KG  234 (319)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTS---CC
T ss_pred             HHHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhC---CC
Confidence            999999999999999999999998 8999999876531           1  12233788888999999999884   46


Q ss_pred             cccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHH
Q 018265          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL  345 (358)
Q Consensus       268 ~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l  345 (358)
                      ++.++++.+.++++++|+++.+   .+++++ +++|.| ..+.++|+||.++++|+++++++ +|+++|+++|++|++.|
T Consensus       235 ~~~~~~a~~~~sm~~di~~~~~---~ei~~s~~~~G~~~~~~~~~gvp~~~~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l  310 (319)
T 1lld_A          235 ATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAETL  310 (319)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCcCCccceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHH
Confidence            7889999999999999999865   367775 779988 56899999999999999999995 99999999999999999


Q ss_pred             HHHHHHh
Q 018265          346 AGSIQKG  352 (358)
Q Consensus       346 ~~~~~~~  352 (358)
                      ++.+++.
T Consensus       311 ~~~~~~~  317 (319)
T 1lld_A          311 KETAAQF  317 (319)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998753

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=5.8e-41  Score=336.29  Aligned_cols=291  Identities=15%  Similarity=0.181  Sum_probs=218.6

Q ss_pred             CCCEEEEEcCCCch-HHHHHHHHHhC--CC-CcEEEEEeCCC--chhHHHHHhcC-----CCCCeEEEEeCCCcHHhhhC
Q 018265           45 PGFKVAVLGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVN--TPGVTADISHM-----DTNAVVRGFLGQQQLEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~v-G~~~a~~l~~~--~~-~~el~L~D~~~--~~g~~~dl~~~-----~~~~~v~~~~~t~d~~~al~  113 (358)
                      +++||+|||| |++ +..++..|+.+  ++ ..||+|+|+++  +++ ..|+.+.     .....++.   ++|+++|++
T Consensus        27 ~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~-~~~~~~~~l~~~~~~~~I~~---t~D~~eal~  101 (472)
T 1u8x_X           27 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR-IAGACDVFIREKAPDIEFAA---TTDPEEAFT  101 (472)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH-HHHHHHHHHHHHCTTSEEEE---ESCHHHHHS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCCEEEE---ECCHHHHHc
Confidence            4569999999 888 55577777776  67 78999999987  333 2344332     12344554   468889999


Q ss_pred             CCCEEEEcCCCCCCCCCCH--------------------HhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHH
Q 018265          114 GMDIVIIPAGVPRKPGMTR--------------------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA  173 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r--------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~  173 (358)
                      |||+||++++.++++|++|                    ++++.+|++++++++++|+++||+||+|++|||+|++|+++
T Consensus       102 ~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~  181 (472)
T 1u8x_X          102 DVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT  181 (472)
T ss_dssp             SCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH
T ss_pred             CCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9999999999988777777                    45589999999999999999999999999999999997654


Q ss_pred             HHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCC-CCCceEEEE-----------e-cCCCcccccccccCC----
Q 018265          174 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVG-----------G-HAGVTILPLLSQVKP----  236 (358)
Q Consensus       174 ~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~-~~v~~~v~G-----------~-hg~~~~vp~~s~~~v----  236 (358)
                          ++.+  |+.||||+|... .|++..+|+.+|+++ ++|+++++|           + ||+ +++|.||...+    
T Consensus       182 ----~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~-d~~p~~~~~~~~~g~  253 (472)
T 1u8x_X          182 ----RRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGN-DLMPKLKEHVSQYGY  253 (472)
T ss_dssp             ----HHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCC-BCHHHHHHHHHHHSS
T ss_pred             ----HHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCC-EehHhHHHHHHhcCC
Confidence                6764  788999998665 499999999999997 999999999           8 998 89999987321    


Q ss_pred             -C--------CCCChhH--------------------H----HHHHH----------HHhc-Ccceeeeccc-C--CC--
Q 018265          237 -S--------CSLTPTE--------------------I----DYLTD----------RIQN-GGTEVVEAKT-G--AG--  267 (358)
Q Consensus       237 -~--------~~~~~~~--------------------~----~~l~~----------~v~~-~~~~ii~~~~-g--kg--  267 (358)
                       +        .++..+-                    |    +++.+          ++++ ...++++... +  ++  
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~  333 (472)
T 1u8x_X          254 IPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSS  333 (472)
T ss_dssp             CCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSC
T ss_pred             CccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCc
Confidence             0        0111000                    0    11111          1222 2233322100 1  23  


Q ss_pred             -cccc---cHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          268 -SATL---SMAYAAAKFADACLRGLRGDAGVIECA-YVASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       268 -~t~~---s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                       ++.|   ++|.+++++++||++|++   .+++++ +++|.|   |+|+++|+||+||++|++++... +|+++|+++++
T Consensus       334 ~~~~~~~~~~~~~a~~ii~AI~~d~~---~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~-~Lp~~~~~l~~  409 (472)
T 1u8x_X          334 ENSEIKIDDHASYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVG-TIPQFQKGLME  409 (472)
T ss_dssp             CSCSSCCCTTTHHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHhcCCC---eEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecC-CCCHHHHHHHH
Confidence             3444   899999999999999965   588887 568876   58999999999999999999995 99999999998


Q ss_pred             HHHHHHHHHHHHh
Q 018265          340 KAKKELAGSIQKG  352 (358)
Q Consensus       340 ~s~~~l~~~~~~~  352 (358)
                      .-...-+-.++.+
T Consensus       410 ~~~~~e~l~veAa  422 (472)
T 1u8x_X          410 QQVSVEKLTVEAW  422 (472)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8766555445443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=100.00  E-value=1.5e-32  Score=273.22  Aligned_cols=288  Identities=19%  Similarity=0.215  Sum_probs=197.4

Q ss_pred             CCCCEEEEEcCCCchH--HHHHHHHHhCC-CCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           44 SPGFKVAVLGAAGGIG--QPLAMLMKINP-LVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG--~~~a~~l~~~~-~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      |+++||+|||| |++|  ..++..|+... +..+|+|+|+++.. .....+.+.......+. ..|+|+++|++||||||
T Consensus         3 m~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~~~~~I-~~TtD~~eAl~dADfVI   80 (450)
T 3fef_A            3 LDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRY-EAVSTLKKALSAADIVI   80 (450)
T ss_dssp             CCCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTTSCEEE-EEESSHHHHHTTCSEEE
T ss_pred             CCCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhccCCeE-EEECCHHHHhcCCCEEE
Confidence            45689999998 9984  57777776543 34599999998611 11111111111123333 24689999999999999


Q ss_pred             EcCC------------CCCCCCCCHH----------hHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHH
Q 018265          120 IPAG------------VPRKPGMTRD----------DLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       120 i~ag------------~~~~~g~~r~----------~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                      ++..            +|+|+|+.|.          ....+|+++++++++.|+++||+||+|++|||+|++|+++    
T Consensus        81 ~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~----  156 (450)
T 3fef_A           81 ISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL----  156 (450)
T ss_dssp             ECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----
T ss_pred             eccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----
Confidence            9875            5888887554          4567999999999999999999999999999999998654    


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHh----C---CCCCCCceEEEE-ecCC---------Cccccc----------
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVL----G---LDPREVDVPVVG-GHAG---------VTILPL----------  230 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l----~---v~~~~v~~~v~G-~hg~---------~~~vp~----------  230 (358)
                      ++.  +|+.||||+|+.. .+++..+|+.+    |   +++++|+..++| ||..         .+.+|.          
T Consensus       157 ~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~  233 (450)
T 3fef_A          157 YKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGE  233 (450)
T ss_dssp             HHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETTEEEEEEEEETTEEHHHHHHHHHHHHTT
T ss_pred             HHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecCeEeEEEEEECCEEChHHHHHHHHhhcc
Confidence            554  6889999999877 68999999999    5   779999999999 6643         123331          


Q ss_pred             ---------cccc-----------------------------CCCCCC-----------ChhHH-----HHHHHHHhcC-
Q 018265          231 ---------LSQV-----------------------------KPSCSL-----------TPTEI-----DYLTDRIQNG-  255 (358)
Q Consensus       231 ---------~s~~-----------------------------~v~~~~-----------~~~~~-----~~l~~~v~~~-  255 (358)
                               |...                             +.+..|           +...+     .+..++..+. 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  313 (450)
T 3fef_A          234 SGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLI  313 (450)
T ss_dssp             TCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHHHHHHHHHh
Confidence                     1000                             000000           00000     0011111110 


Q ss_pred             -cceeeecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEEEEEcCCceEEEccCCCC
Q 018265          256 -GTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY-VASTV---TELPFFASKVRLGRAGIEEIYSLGPL  330 (358)
Q Consensus       256 -~~~ii~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L  330 (358)
                       +.+-+..   +++     +.+++++++||++|++   .+++++. ++|.|   |+|+++|+||++|++|++++.. ++|
T Consensus       314 ~~~~~~~~---~~~-----~e~~~~ii~aI~~d~~---~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~-g~L  381 (450)
T 3fef_A          314 VQQRGVAE---KAS-----GEEGVNIIAALLGLGE---LVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILS-GAL  381 (450)
T ss_dssp             HTTCCCCC---SCC-----SCCHHHHHHHHTTSCC---EEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCC-CCC
T ss_pred             cCCcCcCc---Ccc-----HHHHHHHHHHHHcCCC---eEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceeccc-CCC
Confidence             0111111   111     2457899999999965   4888874 58886   6899999999999999999988 599


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHh
Q 018265          331 NEYERAGLEKAKKELAGSIQKG  352 (358)
Q Consensus       331 ~~~E~~~l~~s~~~l~~~~~~~  352 (358)
                      +++++++++.-...-+-.++.+
T Consensus       382 p~~~~~l~~~~~~~e~l~veAa  403 (450)
T 3fef_A          382 PKGVEMLAARHISNQEAVADAG  403 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999877655544444443

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.97  E-value=1.2e-30  Score=261.39  Aligned_cols=291  Identities=19%  Similarity=0.162  Sum_probs=191.8

Q ss_pred             CCCCEEEEEcCCCchHHHH--HHHHHhC-CC-CcEEEEEeCCC--chhHHHHHh-----cCCCCCeEEEEeCCCcHHhhh
Q 018265           44 SPGFKVAVLGAAGGIGQPL--AMLMKIN-PL-VSVLHLYDVVN--TPGVTADIS-----HMDTNAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~--a~~l~~~-~~-~~el~L~D~~~--~~g~~~dl~-----~~~~~~~v~~~~~t~d~~~al  112 (358)
                      |+++||+|||| |+||++.  +..|+.. ++ ..+|+|+|+++  +.+ +.++.     +......++.   ++|+++|+
T Consensus         1 m~~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal   75 (480)
T 1obb_A            1 MPSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVI   75 (480)
T ss_dssp             -CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHH
T ss_pred             CCCCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHh
Confidence            35689999998 9986555  5577643 34 56999999987  232 22222     1222234543   47888999


Q ss_pred             CCCCEEEEcCCC------------CCCCCCCH--H------------hHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          113 TGMDIVIIPAGV------------PRKPGMTR--D------------DLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       113 ~~aDiVIi~ag~------------~~~~g~~r--~------------~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      +|||+||+++|.            |+|+|+.|  .            .++.+|++++++++++|+++||+||+|++|||+
T Consensus        76 ~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPv  155 (480)
T 1obb_A           76 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPI  155 (480)
T ss_dssp             TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCH
T ss_pred             CCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence            999999999986            45566544  3            358999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE-ecCC---------Ccccc-------
Q 018265          167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAG---------VTILP-------  229 (358)
Q Consensus       167 d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G-~hg~---------~~~vp-------  229 (358)
                      |++|+++    ++   +|+.||||+|+++. ++++++ +.+|+++++|+++|+| ||..         ++.+|       
T Consensus       156 di~t~~~----~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~  226 (480)
T 1obb_A          156 FEGTTLV----TR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHGIWLNRFRYNGGNAYPLLDKWIE  226 (480)
T ss_dssp             HHHHHHH----HH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHH
T ss_pred             HHHHHHH----HH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecchhhhhheeeCCeEcHHHHHHHHH
Confidence            9998654    55   67899999975554 478999 9999999999999999 4432         11111       


Q ss_pred             ----------cccc--cC-----------CCC-------CCC------h-------------h-----H----HHHHHHH
Q 018265          230 ----------LLSQ--VK-----------PSC-------SLT------P-------------T-----E----IDYLTDR  251 (358)
Q Consensus       230 ----------~~s~--~~-----------v~~-------~~~------~-------------~-----~----~~~l~~~  251 (358)
                                .|+.  ..           ++.       .+.      .             +     +    +.+..+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~  306 (480)
T 1obb_A          227 EKSKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEI  306 (480)
T ss_dssp             HTGGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred             ccCccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHH
Confidence                      1322  11           001       111      1             0     1    0011111


Q ss_pred             HhcCcceeeecccCCC--------cccc----------------cHHHHHHHHHHHHHccCCCCCcEEEeeE-EeCCC--
Q 018265          252 IQNGGTEVVEAKTGAG--------SATL----------------SMAYAAAKFADACLRGLRGDAGVIECAY-VASTV--  304 (358)
Q Consensus       252 v~~~~~~ii~~~~gkg--------~t~~----------------s~A~ai~~ii~ai~~~~~~~~~v~~~s~-~~g~~--  304 (358)
                      +.+.-+++.+...-+.        .++|                ..+..++++++||++|++   .++.+++ ++|.+  
T Consensus       307 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~  383 (480)
T 1obb_A          307 TKKVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLNDNK---ARFVVNIPNKGIIHG  383 (480)
T ss_dssp             HHHHHHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHHHCCC---EEEEEEEECTTSSTT
T ss_pred             HHHHHHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHhCCC---eEEEEEeeCCceeCC
Confidence            1111111111000000        0111                112568899999999975   3666654 46764  


Q ss_pred             -CCccEEEEEEEEcCCceEEEccCCC-CCHHHHHH-HHHHHHHHHHHHHHh
Q 018265          305 -TELPFFASKVRLGRAGIEEIYSLGP-LNEYERAG-LEKAKKELAGSIQKG  352 (358)
Q Consensus       305 -~~~~~~svPv~ig~~Gv~~i~~~~~-L~~~E~~~-l~~s~~~l~~~~~~~  352 (358)
                       |+|.++++||+++++|+.++.. ++ |+++.+++ ++.-...-+-.++.+
T Consensus       384 lp~d~vVEvp~~v~~~G~~p~~~-g~~lP~~~~~l~~~~~~~~e~l~veA~  433 (480)
T 1obb_A          384 IDDDVVVEVPALVDKNGIHPEKI-EPPLPDRVVKYYLRPRIMRMEMALEAF  433 (480)
T ss_dssp             SCTTSEEEEEEEEETTEEEECCC-SSCCCHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEEEcCCCCEeecc-CCCCCHHHHhHHHHHHHHHHHHHHHHH
Confidence             8899999999999999999987 58 99999999 776655544444433

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.97  E-value=4.9e-30  Score=257.81  Aligned_cols=275  Identities=19%  Similarity=0.155  Sum_probs=181.1

Q ss_pred             CEEEEEcCCCchHHHHH--HHHHhCC----CCcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCcHHhhhCCCC
Q 018265           47 FKVAVLGAAGGIGQPLA--MLMKINP----LVSVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMD  116 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a--~~l~~~~----~~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aD  116 (358)
                      |||+|||| |++|++..  ..++...    ..++|+|+|+++  +++...++.+..  ....++.. .|+|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~-~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVV-KTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEE-EESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEE-EeCCHHHHhCCCC
Confidence            79999998 99987753  2344432    246999999987  455555555542  12233332 3679999999999


Q ss_pred             EEEEcCCC-------------------CCCCCCCHHhH---------------HHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018265          117 IVIIPAGV-------------------PRKPGMTRDDL---------------FNINAGIVKTLCEGIAKCCPKAIVNLI  162 (358)
Q Consensus       117 iVIi~ag~-------------------~~~~g~~r~~~---------------~~~N~~i~~~i~~~i~~~~p~a~viv~  162 (358)
                      |||+++|.                   |+|+|++|.++               ..+|++++.+++++|+++|||||+||+
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99999874                   34667665443               246899999999999999999999999


Q ss_pred             cCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccC-------
Q 018265          163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK-------  235 (358)
Q Consensus       163 tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~-------  235 (358)
                      |||++++|+++    +++++   .|++|+|+....  ...+++.+|+++++|+..+.|-|+. +.+..|+...       
T Consensus       159 tNP~~i~t~a~----~~~~~---~k~vGlC~~~~~--~~~~~~~Lg~~~~~v~~~~~GlNH~-~w~~~~~~~G~D~~P~l  228 (477)
T 3u95_A          159 ANPVFEITQAV----RRWTG---ANIIGFCHGVAG--VYEVFERLGLDPEEVDWQVAGVNHG-IWLNRFRYRGKDAYPLL  228 (477)
T ss_dssp             SSCHHHHHHHH----HHHHC---CCEEEECCGGGH--HHHHHHHTTCCGGGEEEEEEEETTE-EEEEEEEETTEECHHHH
T ss_pred             cChHHHHHHHH----HHhCC---CCeEEECCCHHH--HHHHHHHhCCCHHHcEEEEeecCCC-eeeeeeeecCCcccHHH
Confidence            99999998654    56655   589999975543  4567788999999999999995554 2222221100       


Q ss_pred             ---------------C-------------------C------C-----CCChh----------------HHHHH------
Q 018265          236 ---------------P-------------------S------C-----SLTPT----------------EIDYL------  248 (358)
Q Consensus       236 ---------------v-------------------~------~-----~~~~~----------------~~~~l------  248 (358)
                                     .                   +      +     .+..+                +...+      
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  308 (477)
T 3u95_A          229 DEWIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFHEHLRR  308 (477)
T ss_dssp             HHHHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence                           0                   0      0     00000                00000      


Q ss_pred             -H-------HHHhcCc-ceeeecc--cCCCcccccHHHHHHHHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEE
Q 018265          249 -T-------DRIQNGG-TEVVEAK--TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY-VASTV---TELPFFASK  313 (358)
Q Consensus       249 -~-------~~v~~~~-~~ii~~~--~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svP  313 (358)
                       .       +++.+.. .......  ...+...+|  .+++++++||++|++   .++.+++ ++|.+   |+|.++++|
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~a~~ii~AI~~~~~---~~~~vNv~N~G~I~nLP~DavVEVp  383 (477)
T 3u95_A          309 ARERLIKLAEEVQENPHLKITEKHPEIFPKGRLSG--EQHIPFINAIANNKR---VRLFLNVENQGALKDFPDDLVMELP  383 (477)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHCTTTSCSSCCCC--CSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCTTSEEEEE
T ss_pred             HHHHHHHHHHHHhhccchhcccccchhcccccccH--HHHHHHHHHHhCCCC---eEEEEEeecCcccCCCCCCcEEEEE
Confidence             0       0111100 0000000  001122233  567899999999976   3666664 47765   789999999


Q ss_pred             EEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          314 VRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       314 v~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                      |+|+++|+.++.- +++++...+++.
T Consensus       384 c~Vd~~Gi~P~~v-g~~p~~~~~l~~  408 (477)
T 3u95_A          384 VWVDSSGIHREKV-EPDLTHRIKIFY  408 (477)
T ss_dssp             EEEETTEEEECCC-CSCCCHHHHHHT
T ss_pred             EEEcCCCcccccC-CCCCHHHHHHHH
Confidence            9999999998765 588888777653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.75  E-value=9.1e-09  Score=97.93  Aligned_cols=119  Identities=14%  Similarity=0.171  Sum_probs=85.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--H----HHHhcCC--C---C-----CeEEEEeCCCc
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T----ADISHMD--T---N-----AVVRGFLGQQQ  107 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~----~dl~~~~--~---~-----~~v~~~~~t~d  107 (358)
                      .||+|||| |.+|+.+|..++..|+  +++|+|+++ .  .+.  .    ..+....  .   .     .+++   .++|
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~---~~~~   80 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLIS---SCTN   80 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEE---EECC
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcc---cccc
Confidence            49999998 9999999999999998  999999986 1  111  1    1111111  0   0     1233   3468


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018265          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      +++++++||+||.++              .+|+++.+++.+++.+++ |++  |+.||.+.+...-+    ..... .|+
T Consensus        81 l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~a--IlaSNTSsl~is~i----a~~~~-~p~  139 (319)
T 3ado_A           81 LAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRV--VLSSSSSCLLPSKL----FTGLA-HVK  139 (319)
T ss_dssp             HHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSS--EEEECCSSCCHHHH----HTTCT-TGG
T ss_pred             hHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcc--eeehhhhhccchhh----hhhcc-CCC
Confidence            889999999999984              457899999999999999 577  45899988775322    23333 357


Q ss_pred             cEEEee
Q 018265          187 RLLGVT  192 (358)
Q Consensus       187 kviG~t  192 (358)
                      |++|+-
T Consensus       140 r~ig~H  145 (319)
T 3ado_A          140 QCIVAH  145 (319)
T ss_dssp             GEEEEE
T ss_pred             cEEEec
Confidence            898874

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.60  E-value=1.2e-07  Score=89.98  Aligned_cols=188  Identities=14%  Similarity=0.086  Sum_probs=103.3

Q ss_pred             hcCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCC
Q 018265           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA   97 (358)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~   97 (358)
                      |-|||+.-.+=....+.         +++|||.|+||+|++|++++..|+..|...+++.+|..........+......+
T Consensus         5 ~~~~~~~~~~~~n~~~~---------~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~   75 (346)
T 4egb_A            5 HHHSSGVDLGTENLYFQ---------SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHP   75 (346)
T ss_dssp             ----------------------------CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCT
T ss_pred             cccccccccCccccccc---------cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCC
Confidence            45777765533332221         345799999999999999999999888434888888764221112222221123


Q ss_pred             eEEEEeCC----CcHHhhhCC--CCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-C--
Q 018265           98 VVRGFLGQ----QQLEDALTG--MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-V--  166 (358)
Q Consensus        98 ~v~~~~~t----~d~~~al~~--aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~--  166 (358)
                      .+..+.+.    .++.+++++  +|+||++|+.....  .....+.+..|+.....+++.+.+.... .+|++|.. +  
T Consensus        76 ~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~  154 (346)
T 4egb_A           76 NYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYG  154 (346)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGC
T ss_pred             CeEEEEcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhC
Confidence            34433221    234566776  99999999864321  1234556788999999999999887644 34444321 1  


Q ss_pred             -----CccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          167 -----NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       167 -----d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                           ..++        ......+...+|.+.....++...+++..|++..-++ ..++|...
T Consensus       155 ~~~~~~~~~--------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  209 (346)
T 4egb_A          155 SLGKTGRFT--------EETPLAPNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ  209 (346)
T ss_dssp             CCCSSCCBC--------TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             CCCcCCCcC--------CCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence                 1110        1112233455666666666777777777888766664 56788544

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.49  E-value=2.4e-07  Score=87.95  Aligned_cols=158  Identities=16%  Similarity=0.175  Sum_probs=99.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi  120 (358)
                      ...+++||.|+||+|++|++++..|+..|.  +|+.+|++...      ...   ..+.. +....++.++++++|+||+
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~------~~~---~~~~~Dl~d~~~~~~~~~~~d~vih   83 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG------TGG---EEVVGSLEDGQALSDAIMGVSAVLH   83 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS------SCC---SEEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC------CCc---cEEecCcCCHHHHHHHHhCCCEEEE
Confidence            344567999999999999999999999987  89999986522      000   01110 0011345678899999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC--------CCC-ccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN--------PVN-STVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN--------P~d-~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      +|+..........+.+..|+.....+++.+.+.... .+|++|.        +.. .++        .....++...+|.
T Consensus        84 ~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~--------E~~~~~~~~~Y~~  154 (347)
T 4id9_A           84 LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFLPVT--------EDHPLCPNSPYGL  154 (347)
T ss_dssp             CCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSSSBC--------TTSCCCCCSHHHH
T ss_pred             CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCCCcC--------CCCCCCCCChHHH
Confidence            998654333334677888999999999999886544 4454443        111 111        1112334455666


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCc-eEEE
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVD-VPVV  219 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~-~~v~  219 (358)
                      +.....++...+++..|++..-++ ..++
T Consensus       155 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          155 TKLLGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEccceEe
Confidence            666666777777777777665564 4566

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.46  E-value=4.3e-07  Score=85.65  Aligned_cols=170  Identities=14%  Similarity=0.043  Sum_probs=102.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi  120 (358)
                      +.|||.|+||+|++|++++..|+..+...+|+.+|+....+....+.+......+..+...    .++++++.++|+||+
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   81 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH   81 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence            4579999999999999999999887622389999875311111112211111233332221    234566789999999


Q ss_pred             cCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC-------CccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-------NSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       121 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-------d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      +||.....  .....+.+..|+.....+++.+.+......+|++|...       ..++        .....++...+|.
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~--------E~~~~~~~~~Y~~  153 (336)
T 2hun_A           82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFT--------ENDRLMPSSPYSA  153 (336)
T ss_dssp             CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBC--------TTBCCCCCSHHHH
T ss_pred             CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcC--------CCCCCCCCCccHH
Confidence            99864210  11234567889999999999999885445666665321       0010        1112334445666


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      +.....++...+++.+|++..-++ ..++|..
T Consensus       154 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~  185 (336)
T 2hun_A          154 TKAASDMLVLGWTRTYNLNASITRCTNNYGPY  185 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEEECEEESTT
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcC
Confidence            666666676777777776655554 4567754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.46  E-value=7.4e-07  Score=84.62  Aligned_cols=174  Identities=14%  Similarity=0.045  Sum_probs=105.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC---CCeEEEEeC----CCcHHhhhCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---NAVVRGFLG----QQQLEDALTGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~---~~~v~~~~~----t~d~~~al~~a  115 (358)
                      +++||.|+||+|++|++++..|+..|.  +|+.+|+..  ......++.....   ...+..+.+    ..++.++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            457999999999999999999999887  999999865  2222223322110   012332221    12456788999


Q ss_pred             CEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccHHHHHHHHHHhCCCCCCcEEEee
Q 018265          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       116 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t~~~~~~~~~~~~~p~~kviG~t  192 (358)
                      |+||++|+.....  .....+.+..|+.....+++.+.+....- +|++|.. +.....  ...+.......+...+|.+
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~SS~~vyg~~~--~~~~~E~~~~~p~~~Y~~s  178 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS-FTYAASSSTYGDHP--ALPKVEENIGNPLSPYAVT  178 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEEEGGGGTTCC--CSSBCTTCCCCCCSHHHHH
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEecHHhcCCCC--CCCCccCCCCCCCChhHHH
Confidence            9999999853211  12334567889999999999998876543 4444321 100000  0000000111233456666


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      .....++...+++..|++..-++ ..++|...
T Consensus       179 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  210 (351)
T 3ruf_A          179 KYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQ  210 (351)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEEECSEESTTC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeCceeCcCC
Confidence            66667777777888888776665 46888654

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.42  E-value=1.2e-06  Score=92.23  Aligned_cols=119  Identities=17%  Similarity=0.218  Sum_probs=84.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--H---HH-----HhcCC---CCCeEEEEeCCCcHH
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T---AD-----ISHMD---TNAVVRGFLGQQQLE  109 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~---~d-----l~~~~---~~~~v~~~~~t~d~~  109 (358)
                      -.||+|||| |.+|+.+|..++..|+  +++|+|+++ .  .+.  .   ++     .....   ....++.   ++|+ 
T Consensus       316 i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~-  388 (742)
T 3zwc_A          316 VSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST-  388 (742)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE---ESCG-
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc---cCcH-
Confidence            369999998 9999999999999998  999999986 1  111  0   00     11111   1123433   3565 


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      +++++||+||.+.              .+|+++.+++.+++++++ |++  |+.||.+.+-..-+    ...... |+|+
T Consensus       389 ~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~a--IlASNTSsl~i~~i----a~~~~~-p~r~  447 (742)
T 3zwc_A          389 KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA--FLCTNTSALNVDDI----ASSTDR-PQLV  447 (742)
T ss_dssp             GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSSSCHHHH----HTTSSC-GGGE
T ss_pred             HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCc--eEEecCCcCChHHH----HhhcCC-cccc
Confidence            6799999999984              467899999999999999 577  45899988765322    233333 5789


Q ss_pred             EEee
Q 018265          189 LGVT  192 (358)
Q Consensus       189 iG~t  192 (358)
                      +|+-
T Consensus       448 ig~H  451 (742)
T 3zwc_A          448 IGTH  451 (742)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8874

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.41  E-value=1e-06  Score=82.35  Aligned_cols=163  Identities=16%  Similarity=0.145  Sum_probs=100.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      |||.|+||+|++|++++..|+..|.  +|+.++++.....   +....   .+.. .. ..++.++++++|+||++++..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~~---~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDYE---YRVSDYT-LEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CCE---EEECCCC-HHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCceE---EEEcccc-HHHHHHhhcCCCEEEEccccC
Confidence            6999999999999999999999987  9999998741111   22110   0110 11 234677889999999999865


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC-CCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHH
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN-P~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA  204 (358)
                      ...  ...+....|+.....+++.+.+...+- +|++|. -+.--..  ...+.......+...+|.+.....++...++
T Consensus        74 ~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r-~v~~SS~~vyg~~~--~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  148 (311)
T 3m2p_A           74 GSQ--GKISEFHDNEILTQNLYDACYENNISN-IVYASTISAYSDET--SLPWNEKELPLPDLMYGVSKLACEHIGNIYS  148 (311)
T ss_dssp             CSS--SCGGGTHHHHHHHHHHHHHHHHTTCCE-EEEEEEGGGCCCGG--GCSBCTTSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCC--ChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEccHHHhCCCC--CCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence            332  334566889999999999999876543 444432 1110000  0000001112233456666666667777777


Q ss_pred             HHhCCCCCCCc-eEEEEecC
Q 018265          205 EVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       205 ~~l~v~~~~v~-~~v~G~hg  223 (358)
                      +..|++..-++ ..++|...
T Consensus       149 ~~~g~~~~ilRp~~v~G~~~  168 (311)
T 3m2p_A          149 RKKGLCIKNLRFAHLYGFNE  168 (311)
T ss_dssp             HHSCCEEEEEEECEEECSCC
T ss_pred             HHcCCCEEEEeeCceeCcCC
Confidence            77777666554 46777544

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.39  E-value=5.2e-07  Score=84.11  Aligned_cols=121  Identities=16%  Similarity=0.244  Sum_probs=75.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHh-----------cCCC------CCeEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS-----------HMDT------NAVVRGFLGQQ  106 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~-----------~~~~------~~~v~~~~~t~  106 (358)
                      .+||+|||+ |.+|+.+|..++..|.  +|+++|+++  .......+.           ....      ...+..   ++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---SD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---eC
Confidence            469999998 9999999999999998  999999986  111111110           0000      012333   35


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |+++++++||+||++..              .+....+++.+.+.+++ |+++++  ||...+...   +..... . .+
T Consensus        78 ~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il~--s~tS~~~~~---~la~~~-~-~~  136 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIFA--TNSSTLLPS---DLVGYT-G-RG  136 (283)
T ss_dssp             CHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEEE--ECCSSSCHH---HHHHHH-S-CG
T ss_pred             CHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEEE--ECCCCCCHH---HHHhhc-C-CC
Confidence            78888999999999852              23456667777787777 566554  444333321   111222 2 23


Q ss_pred             CcEEEeee
Q 018265          186 KRLLGVTM  193 (358)
Q Consensus       186 ~kviG~t~  193 (358)
                      .+++|+..
T Consensus       137 ~~~ig~h~  144 (283)
T 4e12_A          137 DKFLALHF  144 (283)
T ss_dssp             GGEEEEEE
T ss_pred             cceEEEcc
Confidence            57887753

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.33  E-value=1e-06  Score=81.01  Aligned_cols=154  Identities=16%  Similarity=0.115  Sum_probs=96.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiVIi~  121 (358)
                      +++|.|+||+|++|++++..|+..|.  +|++.|++.....         ...+..+.    ...++.+++++.|+||++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            45899999999999999999998886  8999998762111         01122111    113456778999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC-CCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN-P~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~  200 (358)
                      ||...  .....+.+..|+.....+++.+.+... ..||++|. -+.....- ...+......++...+|.+......+.
T Consensus        72 Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iv~~SS~~~~g~~~~-~~~~~e~~~~~~~~~Y~~sK~~~e~~~  147 (267)
T 3rft_A           72 GGISV--EKPFEQILQGNIIGLYNLYEAARAHGQ-PRIVFASSNHTIGYYPQ-TERLGPDVPARPDGLYGVSKCFGENLA  147 (267)
T ss_dssp             CSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEEEEGGGGTTSBT-TSCBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEcchHHhCCCCC-CCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence            98742  223456678899999999999987754 34555542 21100000 000001112334455666666666777


Q ss_pred             HHHHHHhCCCCCCC
Q 018265          201 TFVAEVLGLDPREV  214 (358)
Q Consensus       201 ~~lA~~l~v~~~~v  214 (358)
                      ..+++.+|++...+
T Consensus       148 ~~~a~~~g~~~~~v  161 (267)
T 3rft_A          148 RMYFDKFGQETALV  161 (267)
T ss_dssp             HHHHHHHCCCEEEE
T ss_pred             HHHHHHhCCeEEEE
Confidence            78888887654334

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.31  E-value=1.1e-05  Score=72.21  Aligned_cols=113  Identities=18%  Similarity=0.111  Sum_probs=77.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCC-eEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ..+.|||.|+||+|++|++++..|+..|.  +|++++++.....  ++.+..  . .+.....+.++.+++.++|+||++
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~--~~~~~~~Dl~~~~~~~~~~~D~vi~~   91 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERG--ASDIVVANLEEDFSHAFASIDAVVFA   91 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTT--CSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCC--CceEEEcccHHHHHHHHcCCCEEEEC
Confidence            34567999999999999999999999987  9999998752211  122111  1 111100114567889999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +|....  ......+..|+.....+++.+++.... .+|++|.
T Consensus        92 ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  131 (236)
T 3e8x_A           92 AGSGPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSS  131 (236)
T ss_dssp             CCCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             CCCCCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            986532  345556778999999999999887643 5555554

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.30  E-value=2.4e-06  Score=79.61  Aligned_cols=165  Identities=18%  Similarity=0.133  Sum_probs=100.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC---CCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG---QQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~~al~~aDiVIi~ag  123 (358)
                      |||.|+||+|++|++++..|+..|.  +|+.+|++.....  +...    ..+..+..   ..++.+++++ |+||++|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~----~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVN----PSAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSC----TTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcC----CCceEEECccccHHHHhhcCC-CEEEECCC
Confidence            6999999999999999999999987  9999997651111  0111    11111110   1124566677 99999998


Q ss_pred             CCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHH
Q 018265          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (358)
Q Consensus       124 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~  200 (358)
                      .+...  .......+..|+.....+++.+.+.... .+|++|.- +.--..  ...+......++...+|.+.....++.
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~--~~~~~e~~~~~p~~~Y~~sK~~~e~~~  148 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDAD--VIPTPEEEPYKPISVYGAAKAAGEVMC  148 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCC--CCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence            64321  2334566788999999999999887644 44444321 100000  000001112334455666666667777


Q ss_pred             HHHHHHhCCCCCCCc-eEEEEecC
Q 018265          201 TFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      ..+++.+|++..-++ ..++|...
T Consensus       149 ~~~~~~~g~~~~~lrp~~v~g~~~  172 (312)
T 3ko8_A          149 ATYARLFGVRCLAVRYANVVGPRL  172 (312)
T ss_dssp             HHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHhCCCEEEEeeccccCcCC
Confidence            778888887766664 47888653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.30  E-value=2.7e-06  Score=80.12  Aligned_cols=167  Identities=13%  Similarity=-0.041  Sum_probs=98.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCC--CCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTG--MDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~--aDiV  118 (358)
                      +.|||.|+||+|++|++++..|+..|.  +|+++|++........+........+..+...    .++.+++++  .|+|
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   79 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEV   79 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEE
Confidence            457999999999999999999999887  99999987622111112211111223322111    234455665  5999


Q ss_pred             EEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC-C------ccHHHHHHHHHHhCCCCCCcEE
Q 018265          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-N------STVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-d------~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      |++||.....  .......+..|+.....+++.+.+......+|++|... .      .++        .....++...+
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~--------e~~~~~~~~~Y  151 (345)
T 2z1m_A           80 YNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQT--------EKTPFYPRSPY  151 (345)
T ss_dssp             EECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBC--------TTSCCCCCSHH
T ss_pred             EECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCC--------ccCCCCCCChh
Confidence            9999864211  12345567889999999999988765435666654321 0      000        11123334456


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCC-ceEEEEe
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREV-DVPVVGG  221 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v-~~~v~G~  221 (358)
                      |.+.....++-..+++.++++.... .+.++|.
T Consensus       152 ~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp  184 (345)
T 2z1m_A          152 AVAKLFGHWITVNYREAYNMFACSGILFNHESP  184 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             HHHHHHHHHHHHHHHHHhCCceEeeeeeeecCC
Confidence            6666666666677777777653322 2334553

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.27  E-value=3e-06  Score=79.88  Aligned_cols=167  Identities=18%  Similarity=0.167  Sum_probs=98.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC---CC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCCCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKIN---PL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~---~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiV  118 (358)
                      |||.|+||+|++|++++..|+..   +. ..+|+++|++...+....+........+..+...    .++.+++.++|+|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   80 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence            68999999999999999999885   40 0389999975411110111111111223332211    2345677899999


Q ss_pred             EEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-C------CccHHHHHHHHHHhCCCCCCcEE
Q 018265          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-V------NSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~------d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      |++|+.....  .....+.+..|+.....+++.+.+.... .+|++|.. +      ..++        .....++...+
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~--------E~~~~~~~~~Y  151 (337)
T 1r6d_A           81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWT--------ESSPLEPNSPY  151 (337)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBC--------TTSCCCCCSHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCCCCC--------CCCCCCCCCch
Confidence            9999864210  0123456788999999999999887533 45554421 1      0110        11122334456


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      |.+.....++-..+++..|++..-++ ..++|..
T Consensus       152 ~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~  185 (337)
T 1r6d_A          152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCC
Confidence            66666666666677777787665554 4677754

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.26  E-value=3e-06  Score=79.95  Aligned_cols=172  Identities=15%  Similarity=0.054  Sum_probs=100.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCcHHhhhC--CCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDALT--GMD  116 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~--~aD  116 (358)
                      .+|+|.|+||+|++|++++..|+..|.  +|+++|++.  ......++.... ...+..+..    ..+++++++  ++|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCc
Confidence            346999999999999999999999987  999999865  222222222110 011222111    123455666  899


Q ss_pred             EEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccHHHHHHHHHHhCCCCCCcEEEeee
Q 018265          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (358)
Q Consensus       117 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t~~~~~~~~~~~~~p~~kviG~t~  193 (358)
                      +||++|+.....  .....+.+..|+.....+++.+++.... .+|++|.- +.-...  ...+......++...+|.+.
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~--~~~~~e~~~~~~~~~Y~~sK  157 (341)
T 3enk_A           81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPE--RSPIDETFPLSATNPYGQTK  157 (341)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCS--SSSBCTTSCCBCSSHHHHHH
T ss_pred             EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCC--CCCCCCCCCCCCCChhHHHH
Confidence            999999864211  1123456788999999999999887544 44554421 100000  00000111223344566666


Q ss_pred             ccHHHHHHHHHHHhC-CCCCCCc-eEEEEec
Q 018265          194 LDVVRANTFVAEVLG-LDPREVD-VPVVGGH  222 (358)
Q Consensus       194 lds~R~~~~lA~~l~-v~~~~v~-~~v~G~h  222 (358)
                      ....++...+++.++ ++..-++ ..++|.+
T Consensus       158 ~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~  188 (341)
T 3enk_A          158 LMAEQILRDVEAADPSWRVATLRYFNPVGAH  188 (341)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence            666667777777765 5444443 4677764

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.26  E-value=2.8e-06  Score=79.91  Aligned_cols=174  Identities=17%  Similarity=0.020  Sum_probs=98.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCCCCCeEEEEeCC----CcHHhhhCC
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFLGQ----QQLEDALTG  114 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~  114 (358)
                      +.++++||.|+||+|++|++++..|+..|.  +|+.+|++...   ....++.   ....+..+...    .++.+++++
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~   84 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELG---IEGDIQYEDGDMADACSVQRAVIK   84 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTT---CGGGEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhcc---ccCceEEEECCCCCHHHHHHHHHH
Confidence            456779999999999999999999999886  99999986521   1112221   11223332211    234456665


Q ss_pred             --CCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          115 --MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       115 --aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                        .|+||++|+.....  .......+..|+.....+++.+.+......+|++|... +........+.......+...+|
T Consensus        85 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~-v~g~~~~~~~~E~~~~~p~~~Y~  163 (335)
T 1rpn_A           85 AQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSE-MFGLIQAERQDENTPFYPRSPYG  163 (335)
T ss_dssp             HCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGG-GGCSCSSSSBCTTSCCCCCSHHH
T ss_pred             cCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHH-HhCCCCCCCCCcccCCCCCChhH
Confidence              59999999864311  12345667889999999999998876434566554321 00000000000001122234566


Q ss_pred             eeeccHHHHHHHHHHHhCCCCCCCc-eEEEEe
Q 018265          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGG  221 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~  221 (358)
                      .+.....++...+++.++++..-++ ..++|.
T Consensus       164 ~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp  195 (335)
T 1rpn_A          164 VAKLYGHWITVNYRESFGLHASSGILFNHESP  195 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEeeCcccCC
Confidence            6666666666777777777654443 335564

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.26  E-value=2.5e-06  Score=81.10  Aligned_cols=175  Identities=15%  Similarity=0.092  Sum_probs=100.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhC--CCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALT--GMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~--~aDiVI  119 (358)
                      |||.|+||+|++|++++..|+.. +.  +|+++|++...+....+.+......+..+.+.    .++.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            68999999999999999999886 56  89999875411111111111111233332221    23445666  899999


Q ss_pred             EcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhh--CCC------eEEEEecCCC-CccHHHHHH--------HHHHh
Q 018265          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC--CPK------AIVNLISNPV-NSTVPIAAE--------VFKKV  180 (358)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~--~p~------a~viv~tNP~-d~~t~~~~~--------~~~~~  180 (358)
                      ++||.....  .....+.+..|+.....+++.+.+.  ..+      +.||++|.-. .-...--..        .+...
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~  158 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET  158 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC
Confidence            999864310  0123456778999999999988876  433      3666654311 000000000        00011


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      ...++...+|.+.....++-..+++.+|++..-++ ..|+|...
T Consensus       159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~  202 (361)
T 1kew_A          159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH  202 (361)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCC
Confidence            12234455666666666777777777787666554 46777543

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.25  E-value=1.8e-06  Score=82.69  Aligned_cols=112  Identities=15%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-----CcHHhhhCCCCE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDI  117 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~al~~aDi  117 (358)
                      +.+|||.|+||+|++|++++..|+.. +.  +|+.+|++....  .++...   ..++.+.+.     .++.++++++|+
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~~---~~v~~~~~Dl~~d~~~~~~~~~~~d~   94 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVKH---ERMHFFEGDITINKEWVEYHVKKCDV   94 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGGS---TTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhccC---CCeEEEeCccCCCHHHHHHHhccCCE
Confidence            45679999999999999999999887 76  999999865211  111111   223332111     234567889999


Q ss_pred             EEEcCCCCCCCC--CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          118 VIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       118 VIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      ||++|+......  ....+.+..|+.....+++.+.+.+  ..+|++|.
T Consensus        95 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           95 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            999998643211  2334566788888899999998887  45666554

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.25  E-value=1.1e-05  Score=75.76  Aligned_cols=117  Identities=14%  Similarity=-0.009  Sum_probs=77.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHH-HHhcCCCCCeEEEE-e----CCCcHHhhhCCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-DISHMDTNAVVRGF-L----GQQQLEDALTGMD  116 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-~~~-dl~~~~~~~~v~~~-~----~t~d~~~al~~aD  116 (358)
                      .+.++|.|+||+|++|++++..|+..|.  +|+++|++.... ... .+.... ...+..+ .    ...++.++++++|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCC
Confidence            4567999999999999999999999887  999999864211 111 111100 0122222 1    1234556778999


Q ss_pred             EEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       117 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +||++|+.... +....+.+..|+.....+++.+.+......+|++|.
T Consensus        86 ~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           86 GVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            99999986532 234556778899999999999875333345666554

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.24  E-value=3.9e-06  Score=84.21  Aligned_cols=120  Identities=18%  Similarity=0.188  Sum_probs=75.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC---------------CCeEEEEeCCCcHH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---------------NAVVRGFLGQQQLE  109 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~---------------~~~v~~~~~t~d~~  109 (358)
                      ++|||+|||+ |.||..++..|+..+...+|+++|+++.  .+..+.....               ...++.   ++|++
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~--~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~~   81 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTA--KIAEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDIP   81 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHH--HHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHH
Confidence            4579999998 9999999999988742239999998752  1222222100               012333   46777


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCccHH
Q 018265          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVP  171 (358)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~  171 (358)
                      +++++||+||++.+.|.+.+.++.+. .-++..+.+.++.|.++. |+.+|+.. |+|.+..-.
T Consensus        82 ~~~~~aDvvii~Vptp~~~~g~~~~~-~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~  144 (481)
T 2o3j_A           82 KAIAEADLIFISVNTPTKMYGRGKGM-APDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAES  144 (481)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTTT-SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHH
T ss_pred             HHhhcCCEEEEecCCccccccccccC-CCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHH
Confidence            88999999999988776543222210 122345566667777665 45555543 788876543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.24  E-value=3.5e-06  Score=79.37  Aligned_cols=168  Identities=18%  Similarity=0.076  Sum_probs=92.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi  120 (358)
                      ++|||.|+||+|++|++++..|+..|.  +|+++|++....  .++.+.    .+..+.+    ..++.++++++|+||+
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQI--QRLAYL----EPECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCG--GGGGGG----CCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhh--hhhccC----CeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            347999999999999999999999886  999999875211  112211    1111111    1245677899999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH-HHHHHhCCCCC----CcEEEeeecc
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA-EVFKKVGTYDP----KRLLGVTMLD  195 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~-~~~~~~~~~p~----~kviG~t~ld  195 (358)
                      +++..........+.+..|+.....+++.+.+.... .+|++|...-.-.. .. ..........+    ...++.+...
T Consensus        84 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~-~~~~~~~E~~~~~p~~~~~~~Y~~sK~~  161 (342)
T 2x4g_A           84 SAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGSAYAMPRH-PQGLPGHEGLFYDSLPSGKSSYVLCKWA  161 (342)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECCGGGSCCC-TTSSCBCTTCCCSSCCTTSCHHHHHHHH
T ss_pred             CCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHhhCcC-CCCCCCCCCCCCCccccccChHHHHHHH
Confidence            998643222334556788999999999999887533 44554432210000 00 00000000111    3345555555


Q ss_pred             HHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          196 VVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       196 s~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      ..++...+++. |++..-++ ..++|...
T Consensus       162 ~e~~~~~~~~~-g~~~~ilrp~~v~g~~~  189 (342)
T 2x4g_A          162 LDEQAREQARN-GLPVVIGIPGMVLGELD  189 (342)
T ss_dssp             HHHHHHHHHHT-TCCEEEEEECEEECSCC
T ss_pred             HHHHHHHHhhc-CCcEEEEeCCceECCCC
Confidence            55555555554 66655554 46777643

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.23  E-value=7.4e-06  Score=79.02  Aligned_cols=103  Identities=15%  Similarity=0.193  Sum_probs=72.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC--------CCCCeEEEEeCCCcHHhhhCCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------DTNAVVRGFLGQQQLEDALTGMD  116 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~--------~~~~~v~~~~~t~d~~~al~~aD  116 (358)
                      .+|||+|||+ |.+|.+++..|+..|.  ++.++|+++.....+.-.+.        .....+..   ++|+++++++||
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~~aD  101 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLEGVT  101 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHTTCC
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHhcCC
Confidence            4589999998 9999999999999887  89999987521111111111        01122443   367888999999


Q ss_pred             EEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCcc
Q 018265          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (358)
Q Consensus       117 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~  169 (358)
                      +||++.  |              ...++++++.+..+. |+.+++.++|-.+.-
T Consensus       102 vVilaV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          102 DILIVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             EEEECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred             EEEECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence            999984  2              135677778888776 577888888866543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.22  E-value=5.4e-06  Score=78.77  Aligned_cols=176  Identities=13%  Similarity=0.006  Sum_probs=102.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCC---CCeEEEEeCC----CcHHhhhCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---NAVVRGFLGQ----QQLEDALTG  114 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~---~~~v~~~~~t----~d~~~al~~  114 (358)
                      +++|||.|+||+|++|++++..|+..|.  +|+++|++..  .....++.....   ...+..+...    .++.+++++
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  102 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAG  102 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTT
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcC
Confidence            4567999999999999999999999887  9999998651  111111211000   0122222111    235577899


Q ss_pred             CCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee
Q 018265          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t  192 (358)
                      +|+||++|+.....  .......+..|+.....+++.+.+.... .+|++|...-.-.. ....+.......+...+|.+
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~-~~~~~~E~~~~~~~~~Y~~s  180 (352)
T 1sb8_A          103 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDH-PGLPKVEDTIGKPLSPYAVT  180 (352)
T ss_dssp             CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTC-CCSSBCTTCCCCCCSHHHHH
T ss_pred             CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCC-CCCCCCCCCCCCCCChhHHH
Confidence            99999999864211  0123456678999999999999876443 45554432100000 00000000011223455666


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      .....++...+++..|++..-++ ..++|...
T Consensus       181 K~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~  212 (352)
T 1sb8_A          181 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  212 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEECceeCcCC
Confidence            66666666777777788776665 46888643

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.22  E-value=6.8e-06  Score=81.75  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=72.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--C--------------CCeEEEEeCCCcHHh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------NAVVRGFLGQQQLED  110 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~--------------~~~v~~~~~t~d~~~  110 (358)
                      |||+|||+ |.+|..++..|+..|.  +|+++|+++.+  +..+....  .              ...++.   ++|+++
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~--v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNK--IEQLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIEQ   74 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHH--HHHHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHHH
Confidence            79999998 9999999999999988  99999998621  11122110  0              122443   468888


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEec-CCCCc
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS-NPVNS  168 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t-NP~d~  168 (358)
                      ++++||+||++.+.|...+.      .-++..+.++++.|.++. ++.+|+..| .|.+.
T Consensus        75 a~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            99999999999887754322      223455666667776665 455555443 45544

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.22  E-value=4.2e-06  Score=83.26  Aligned_cols=120  Identities=19%  Similarity=0.274  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-----H-HH-hcCCC--------CCeEEEEeCCCcHH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----A-DI-SHMDT--------NAVVRGFLGQQQLE  109 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~-----~-dl-~~~~~--------~~~v~~~~~t~d~~  109 (358)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++.++..     + .+ .....        ..+++.   ++|+ 
T Consensus        53 ~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~dl-  125 (460)
T 3k6j_A           53 DVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSDF-  125 (460)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESCG-
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCCH-
Confidence            3469999998 9999999999999998  99999998632210     1 11 11110        123443   3577 


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      +++++||+||.+..              .+..+.+++.+++.+++ |+++|  +||-..+-..   ++ ..... .+.++
T Consensus       126 ~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIl--asnTSsl~i~---~i-a~~~~-~p~r~  184 (460)
T 3k6j_A          126 HKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIF--GTNTSSLDLN---EI-SSVLR-DPSNL  184 (460)
T ss_dssp             GGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCHH---HH-HTTSS-SGGGE
T ss_pred             HHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEE--EecCCChhHH---HH-HHhcc-CCcce
Confidence            57999999999852              24677788888898887 57755  4555443321   11 22222 24577


Q ss_pred             EEee
Q 018265          189 LGVT  192 (358)
Q Consensus       189 iG~t  192 (358)
                      +|+-
T Consensus       185 iG~H  188 (460)
T 3k6j_A          185 VGIH  188 (460)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7763

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.22  E-value=9.2e-06  Score=76.54  Aligned_cols=167  Identities=16%  Similarity=0.099  Sum_probs=96.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--h--hHHHHHhcCCCCCeEEEEe----CCCcHHhhhCCCCE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P--GVTADISHMDTNAVVRGFL----GQQQLEDALTGMDI  117 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~--g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDi  117 (358)
                      .+||.|+||+|++|++++..|+..|.  +|+.++++..  .  ....++...   ..+..+.    ...++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQEL---GDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGG---SCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCC---CcEEEEecCCCChHHHHHHHcCCCE
Confidence            46899999999999999999999887  8887766541  1  111223211   1222221    12346678999999


Q ss_pred             EEEcCCCCCCCCCC-HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC---CCC---------
Q 018265          118 VIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG---TYD---------  184 (358)
Q Consensus       118 VIi~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~---~~p---------  184 (358)
                      ||++|+.......+ ..+.+..|+.....+++.+.+...-..||++|....+..      .....   .++         
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~------~~~~~~~~~~~E~~~~~~~~  157 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTI------NQLDGTGLVVDEKNWTDIEF  157 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHH------HHHTCSCCCCCTTTTTCC--
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeec------CCcCCCCcccChhhccchhh
Confidence            99998753211111 123667899999999999887642235666554321100      00000   000         


Q ss_pred             ------CCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          185 ------PKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       185 ------~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                            ..-.++.+.....++...+++..|++..-++ ..|+|...
T Consensus       158 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~  203 (338)
T 2rh8_A          158 LTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSL  203 (338)
T ss_dssp             -----CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCS
T ss_pred             ccccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence                  0113666666666666666666787665554 46777643

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.21  E-value=1.8e-05  Score=74.59  Aligned_cols=118  Identities=14%  Similarity=0.060  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCC-CCeEEEEe----CCCcHHhhhCCCCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-NAVVRGFL----GQQQLEDALTGMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~-~~~v~~~~----~t~d~~~al~~aDiV  118 (358)
                      +.+||.|+||+|++|++++..|+..|.  +|+.++++.. .....++.+... ...+..+.    ...+++++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            346899999999999999999999887  8887776542 111222221110 01232221    123456788999999


Q ss_pred             EEcCCCCCCCCCC-HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          119 IIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       119 Ii~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      |++|+.......+ ..+.+..|+.....+++.+.+...-..||++|.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS  128 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS  128 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence            9998754211122 234678899999999999888753345666554

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=3.8e-06  Score=74.60  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=71.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  121 (358)
                      +|||.|+||+|++|++++..|+..|.  +|++++++....     ...  ...+..+..    ..++.++++++|+||++
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-----~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKI-----KIE--NEHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGC-----CCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccc-----hhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            47999999999999999999999986  999999875211     111  022222211    13456788999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +|....    ..+.+..|+.....+++.+.+.... .++++|
T Consensus        75 a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  111 (227)
T 3dhn_A           75 FNPGWN----NPDIYDETIKVYLTIIDGVKKAGVN-RFLMVG  111 (227)
T ss_dssp             CCC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             CcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            875421    1224567899999999999887644 455544

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.19  E-value=4.2e-06  Score=78.11  Aligned_cols=165  Identities=16%  Similarity=0.120  Sum_probs=97.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe---CCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL---GQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~---~t~d~~~al~~aDiVIi~a  122 (358)
                      +||.|+||+|++|++++..|+..|   .++.++... ....   ...    ..+..+.   ...++.++++++|+||+++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~~---~~~----~~~~~~~~Dl~~~~~~~~~~~~d~vih~a   71 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNEE---FVN----EAARLVKADLAADDIKDYLKGAEEVWHIA   71 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCGG---GSC----TTEEEECCCTTTSCCHHHHTTCSEEEECC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCChh---hcC----CCcEEEECcCChHHHHHHhcCCCEEEECC
Confidence            589999999999999999999888   344444432 1110   000    1111110   0134678889999999999


Q ss_pred             CCCCC--CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHH
Q 018265          123 GVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (358)
Q Consensus       123 g~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~  200 (358)
                      +.+..  ........+..|+.....+++.+.+.... .+|++|.-. +...--...+......++...+|.+.....++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~-vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~  149 (313)
T 3ehe_A           72 ANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTST-VYGEAKVIPTPEDYPTHPISLYGASKLACEALI  149 (313)
T ss_dssp             CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGG-GGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchH-HhCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            86432  12345667788999999999999887644 455554311 000000000000112233455666666667777


Q ss_pred             HHHHHHhCCCCCCCc-eEEEEecC
Q 018265          201 TFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      ..+++.+|++..-++ ..++|...
T Consensus       150 ~~~~~~~g~~~~ilRp~~v~G~~~  173 (313)
T 3ehe_A          150 ESYCHTFDMQAWIYRFANVIGRRS  173 (313)
T ss_dssp             HHHHHHTTCEEEEEECSCEESTTC
T ss_pred             HHHHHhcCCCEEEEeeccccCcCC
Confidence            778888887655554 46788643

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.19  E-value=5.8e-06  Score=77.93  Aligned_cols=171  Identities=16%  Similarity=0.116  Sum_probs=101.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCC--CC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLGQ----QQLEDALTG--MD  116 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~--aD  116 (358)
                      +|||.|+||+|++|++++..|+..|.  +|+++|++.   ......++...   ..+..+...    .++++++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccC---CceEEEEcCCCCHHHHHHHHhccCCC
Confidence            36899999999999999999999887  999999743   11122333321   112222111    234567777  99


Q ss_pred             EEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH----------------HHHH
Q 018265          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA----------------EVFK  178 (358)
Q Consensus       117 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~----------------~~~~  178 (358)
                      +||++|+.....  .......+..|+.....+++.+.+....+.+|++|... +......                ..+.
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~~  154 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNK-VYGDLEQYKYNETETRYTCVDKPNGYD  154 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGG-GGTTCTTSCEEECSSCEEETTCTTCBC
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHH-HhCCCCcCCcccccccccccccccCcc
Confidence            999999864210  01334567889999999999999887655666665321 0000000                0000


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      .....++...+|.+.....++...+++.+|++..-++ ..|+|..
T Consensus       155 e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~  199 (347)
T 1orr_A          155 ESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGR  199 (347)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             ccCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcC
Confidence            0011223344556666666666777777777655554 4577754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.19  E-value=7.7e-06  Score=72.31  Aligned_cols=101  Identities=19%  Similarity=0.161  Sum_probs=70.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC---CCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG---QQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~~al~~aDiVIi~ag  123 (358)
                      |||.|+||+|++|++++..|+..|.  +|++++++...  ..++...    .+..+..   ..+- +++.++|+||+++|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~--~~~~~~~----~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   71 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQK--AADRLGA----TVATLVKEPLVLTE-ADLDSVDAVVDALS   71 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHTCT----TSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccc--cccccCC----CceEEecccccccH-hhcccCCEEEECCc
Confidence            7999999999999999999999987  99999986421  1222211    1122111   1122 67899999999998


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ....+..     ...|+...+.+++.+++..  ..++++|
T Consensus        72 ~~~~~~~-----~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           72 VPWGSGR-----GYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CCTTSSC-----THHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             cCCCcch-----hhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            7522221     3568889999999998776  5566654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.19  E-value=7.1e-06  Score=80.41  Aligned_cols=112  Identities=17%  Similarity=0.264  Sum_probs=71.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC--------------CCeEEEEeCCCcHHhhh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--------------NAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~--------------~~~v~~~~~t~d~~~al  112 (358)
                      |||+|||+ |.||..++..|+. +.  +++++|+++.  .+..+.....              ...++.   ++|+++++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~--~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHH--HHHHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            69999998 9999999999988 75  9999999752  1122222110              012332   35777889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCCCCccHHH
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPI  172 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~t~~  172 (358)
                      ++||+||++...+...+..+.|+     ..+.++++.+....|+.+|+. .|||.+....+
T Consensus        72 ~~aDvviiavpt~~~~~~~~~dl-----~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l  127 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFDT-----QHVETVIKEVLSVNSHATLIIKSTIPIGFITEM  127 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEECC-----HHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHH
T ss_pred             cCCCEEEEecCCCcccCCCCccH-----HHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHH
Confidence            99999999976653222222222     233444444444346776665 68999886544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.17  E-value=1.9e-05  Score=69.39  Aligned_cols=100  Identities=11%  Similarity=0.109  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC---CCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG---QQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~~al~~aDiVIi~ag  123 (358)
                      |||.|+||+|++|++++..|+..|.  +|++++++....  .++.  .   .+..+..   ..+- +++.++|+||+++|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~--~---~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   70 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKI--TQTH--K---DINILQKDIFDLTL-SDLSDQNVVVDAYG   70 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHH--HHHC--S---SSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhh--hhcc--C---CCeEEeccccChhh-hhhcCCCEEEECCc
Confidence            7999999999999999999999987  999999875221  1222  1   1111111   1122 67899999999998


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      .+...       ...|+...+.+++.+++.. ...++++|.
T Consensus        71 ~~~~~-------~~~~~~~~~~l~~a~~~~~-~~~~v~~SS  103 (221)
T 3ew7_A           71 ISPDE-------AEKHVTSLDHLISVLNGTV-SPRLLVVGG  103 (221)
T ss_dssp             SSTTT-------TTSHHHHHHHHHHHHCSCC-SSEEEEECC
T ss_pred             CCccc-------cchHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            75321       2447888899999988764 345555554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.16  E-value=1.1e-05  Score=79.76  Aligned_cols=115  Identities=21%  Similarity=0.260  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC--------------CCeEEEEeCCCc
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--------------NAVVRGFLGQQQ  107 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~--------------~~~v~~~~~t~d  107 (358)
                      ..++.|||+|||+ |.+|..+|..|++ |.  +|+++|+++.  .+..+.....              ...++.   ++|
T Consensus        32 r~~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~--~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~---ttd  102 (432)
T 3pid_A           32 RGSEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQA--KVDMLNQKISPIVDKEIQEYLAEKPLNFRA---TTD  102 (432)
T ss_dssp             ---CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESC
T ss_pred             cccCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHH--HhhHHhccCCccccccHHHHHhhccCCeEE---EcC
Confidence            3445689999998 9999999999887 76  9999999862  1111222100              112333   468


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCCCccH
Q 018265          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTV  170 (358)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~~t  170 (358)
                      +++++++||+||++...+........     ++..+.+.++.|.+..|+.+|++- |.|....-
T Consensus       103 ~~ea~~~aDvViiaVPt~~~~~~~~~-----Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~  161 (432)
T 3pid_A          103 KHDAYRNADYVIIATPTDYDPKTNYF-----NTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTR  161 (432)
T ss_dssp             HHHHHTTCSEEEECCCCEEETTTTEE-----ECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHH
T ss_pred             HHHHHhCCCEEEEeCCCccccccccc-----cHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHH
Confidence            88999999999998654421111111     122333334444444466665544 56665543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.16  E-value=9.8e-06  Score=80.16  Aligned_cols=108  Identities=19%  Similarity=0.251  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--C--------------CCeEEEEeCCCcHHh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------NAVVRGFLGQQQLED  110 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~--------------~~~v~~~~~t~d~~~  110 (358)
                      |||+|||+ |.||..++..|+..|.  +|+++|+++.+  +..+....  .              ...++.   ++|+++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            69999998 9999999999999887  99999997521  11222210  0              112433   467878


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-C---CeEEEEe-cCCCCc
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-P---KAIVNLI-SNPVNS  168 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p---~a~viv~-tNP~d~  168 (358)
                      ++++||+||++...|..... ..     ++..+.+.++.|.++. |   +.+|+.. |+|.+.
T Consensus        73 ~~~~aDvviiaVptp~~~~~-~~-----dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~  129 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNG-DL-----DLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTS-SB-----CCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             HhccCCEEEEEcCCCcccCC-Cc-----chHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence            89999999999876653221 11     2233344444444432 4   5666654 788776

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.16  E-value=5.5e-06  Score=79.13  Aligned_cols=114  Identities=16%  Similarity=0.102  Sum_probs=77.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCch-----------hHHHHHhcCCCCCeEEEEeC----C
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTP-----------GVTADISHMDTNAVVRGFLG----Q  105 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~--~~~~~el~L~D~~~~~-----------g~~~dl~~~~~~~~v~~~~~----t  105 (358)
                      .+++|||.|+||+|++|++++..|+.  .|.  +|+++|++...           +....+.    ...+..+.+    .
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~   80 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLI----GFKGEVIAADINNP   80 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGT----TCCSEEEECCTTCH
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhcc----ccCceEEECCCCCH
Confidence            35568999999999999999999998  777  99999975420           0001111    111222211    1


Q ss_pred             CcHHhh-hCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          106 QQLEDA-LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       106 ~d~~~a-l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      .+++++ ..++|+||++||..........+.+..|+.....+++.+++....  +|++|.
T Consensus        81 ~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~SS  138 (362)
T 3sxp_A           81 LDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYASS  138 (362)
T ss_dssp             HHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEEE
T ss_pred             HHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeCc
Confidence            234455 689999999998654333456677889999999999999877543  555443

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.16  E-value=4.1e-06  Score=77.85  Aligned_cols=186  Identities=13%  Similarity=0.112  Sum_probs=89.1

Q ss_pred             hhcCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC
Q 018265           17 AHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD   94 (358)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~   94 (358)
                      -|+|||-.-....+..|+++........+..++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++....
T Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~   81 (281)
T 4dry_A            4 HHHHSSGVDLGTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRT   81 (281)
T ss_dssp             ------------------------------CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccceEEEeccccccCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            4677777777888988887766665566677899999999999999999999987  899999876  222233332211


Q ss_pred             CCCeEEEEe-CCCc---HHhhh-------CCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHH----HHHHHHHHHh
Q 018265           95 TNAVVRGFL-GQQQ---LEDAL-------TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAK  152 (358)
Q Consensus        95 ~~~~v~~~~-~t~d---~~~al-------~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~  152 (358)
                      . ..+..+. .-+|   .++++       ...|++|+.||.....+    .+   -...+..|+.-    .+.+.+.+.+
T Consensus        82 ~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~  160 (281)
T 4dry_A           82 G-NIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKA  160 (281)
T ss_dssp             S-SCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             C-CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            1 1112111 1122   22222       36799999999743211    12   22244555544    5566666665


Q ss_pred             hC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          153 CC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       153 ~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .. ..+.||+++.-....            +.+..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       161 ~~~~~g~IV~isS~~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  214 (281)
T 4dry_A          161 QTPRGGRIINNGSISAQT------------PRPNSAPYTATKHAITGLTKSTALDGR--MHDIACGQI  214 (281)
T ss_dssp             SSSCCEEEEEECCGGGTC------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cCCCCcEEEEECCHHhCC------------CCCCChhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            54 257788776533221            233334455554444556777777764  344544433

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.15  E-value=1.2e-05  Score=75.33  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHH-------H-H-hcCCC-------------CCeEEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTA-------D-I-SHMDT-------------NAVVRGF  102 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~-------d-l-~~~~~-------------~~~v~~~  102 (358)
                      .+||+|||+ |.+|+.++..|+..|+  +|+++|+++.. ....       + + .....             ...++. 
T Consensus        15 ~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-   90 (302)
T 1f0y_A           15 VKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-   90 (302)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-
Confidence            468999998 9999999999999887  99999998611 1110       0 1 11100             012333 


Q ss_pred             eCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       103 ~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                        ++|+++++++||+||++..              .+..+.+++.+.+.+++ |+++|  +||-..+
T Consensus        91 --~~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i  139 (302)
T 1f0y_A           91 --STDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSSL  139 (302)
T ss_dssp             --ESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSSS
T ss_pred             --ecCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCCC
Confidence              3577778999999999852              12445566777787776 46654  3554443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.14  E-value=6.9e-06  Score=82.85  Aligned_cols=104  Identities=17%  Similarity=0.097  Sum_probs=70.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      +|||.|+||+|++|++++..|+..|.  +|+.++++.....           .+.. .......++++++|+||++|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~-----------~v~~-d~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPG-----------KRFW-DPLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTT-----------CEEC-CTTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCcc-----------ceee-cccchhHHhcCCCCEEEECCCCc
Confidence            78999999999999999999999987  9999998752110           0110 00112357789999999999864


Q ss_pred             CC---CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          126 RK---PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       126 ~~---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ..   ......++...|+.....+++.+.+...-..+|++|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            22   122345567889999999999855443323455544

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.14  E-value=5.6e-06  Score=78.27  Aligned_cols=162  Identities=15%  Similarity=0.064  Sum_probs=100.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMD  116 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aD  116 (358)
                      +|||.|+||+|++|++++..|+..  +.  +|+++|++..   .....++..    ..+..+...    .++.++++++|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~d   77 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAILG----DRVELVVGDIADAELVDKLAAKAD   77 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGCS----SSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhcc----CCeEEEECCCCCHHHHHHHhhcCC
Confidence            469999999999999999999887  55  8999998541   111111211    223332211    23557789999


Q ss_pred             EEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC-------------------CccHHHHHH
Q 018265          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-------------------NSTVPIAAE  175 (358)
Q Consensus       117 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-------------------d~~t~~~~~  175 (358)
                      +||++|+.....  .....+.+..|+.....+++.+.+...  .+|++|.-.                   ..+      
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~------  149 (348)
T 1oc2_A           78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKF------  149 (348)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSB------
T ss_pred             EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCc------
Confidence            999999864310  012345678899999999999988753  566654211                   011      


Q ss_pred             HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       176 ~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                        ......++...+|.+.....++...+++.+|++..-++ ..++|...
T Consensus       150 --~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~  196 (348)
T 1oc2_A          150 --TAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  196 (348)
T ss_dssp             --CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             --CCCCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCC
Confidence              01112334445666666666676777777777655554 45677543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.14  E-value=3.9e-06  Score=79.82  Aligned_cols=166  Identities=16%  Similarity=0.089  Sum_probs=99.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCC--C
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ----QQLEDALTG--M  115 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~--a  115 (358)
                      ++.|+|.|+||+|++|++++..|+..|.  +|+++|++.  .......+..   ...+..+...    .++.+++++  .
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~   81 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQP   81 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCC
Confidence            3457999999999999999999999887  999999865  1111111111   1122222111    234456665  8


Q ss_pred             CEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC-C-------ccHHHHHHHHHHhCCCCC
Q 018265          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-N-------STVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       116 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-d-------~~t~~~~~~~~~~~~~p~  185 (358)
                      |+||++|+.+...  .....+.+..|+.....+++.+.+......+|++|.-. .       ...        .....++
T Consensus        82 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~--------E~~~~~~  153 (357)
T 1rkx_A           82 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYR--------ENEAMGG  153 (357)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBC--------TTSCBCC
T ss_pred             CEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCC--------CCCCCCC
Confidence            9999999864211  11234567789999999999998875334566655421 0       110        0111223


Q ss_pred             CcEEEeeeccHHHHHHHHHHHh---------CCCCCCCc-eEEEEec
Q 018265          186 KRLLGVTMLDVVRANTFVAEVL---------GLDPREVD-VPVVGGH  222 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l---------~v~~~~v~-~~v~G~h  222 (358)
                      ...+|.+.....++...+++.+         |++..-++ ..++|..
T Consensus       154 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~  200 (357)
T 1rkx_A          154 YDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG  200 (357)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCC
Confidence            4455666666666666666655         66555553 4678854

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.13  E-value=6.7e-06  Score=73.68  Aligned_cols=100  Identities=19%  Similarity=0.174  Sum_probs=66.4

Q ss_pred             cCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCch--hHHHHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           38 CRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        38 ~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L-~D~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      |.-+-++++|||+|||+ |.+|..++..|...+.  ++.+ +|++...  ....++.     ....    +++ .+++++
T Consensus        15 ~~~~~~m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g-----~~~~----~~~-~~~~~~   81 (220)
T 4huj_A           15 TENLYFQSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG-----ASVK----AVE-LKDALQ   81 (220)
T ss_dssp             --CTTGGGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT-----TTEE----ECC-HHHHTT
T ss_pred             ccchhhhcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC-----CCcc----cCh-HHHHhc
Confidence            44555677899999998 9999999999999887  7888 8887622  2222221     1111    123 466899


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      +|+||++..    +            ..+.++++.+.. .++.+|+.++||..
T Consensus        82 aDvVilavp----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           82 ADVVILAVP----Y------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             SSEEEEESC----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             CCEEEEeCC----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            999999852    1            223445555544 45668888899985

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.10  E-value=7.3e-06  Score=82.14  Aligned_cols=106  Identities=13%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--C--------------CCeEEEEeCCC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------NAVVRGFLGQQ  106 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~--------------~~~v~~~~~t~  106 (358)
                      ....|||+|||+ |.||..+|..|+..|.  +++++|+++.  .+..+....  .              ...++.   ++
T Consensus         5 ~~~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~--~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---tt   76 (478)
T 2y0c_A            5 HHGSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQA--KIDILNNGGVPIHEPGLKEVIARNRSAGRLRF---ST   76 (478)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---EC
T ss_pred             cCCCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---EC
Confidence            345689999998 9999999999999988  9999999752  112222210  0              012333   46


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI  162 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~  162 (358)
                      |+++++++||+||++...|.....      .-++..+.++++.|.++. |+.+|++-
T Consensus        77 d~~~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~  127 (478)
T 2y0c_A           77 DIEAAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDK  127 (478)
T ss_dssp             CHHHHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             CHHHHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            888889999999999877653321      123455566666666655 45555444

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.10  E-value=1.8e-05  Score=79.18  Aligned_cols=118  Identities=15%  Similarity=0.128  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCc--hhHHHHHhcCCC------------------CCeEEEEe
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDT------------------NAVVRGFL  103 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~--~g~~~dl~~~~~------------------~~~v~~~~  103 (358)
                      +.|||+|||+ |.+|..+|..|+.. |+. +++++|+++.  .+.+..+.....                  ...++.  
T Consensus        17 ~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~--   92 (478)
T 3g79_A           17 PIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC--   92 (478)
T ss_dssp             SCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE--
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE--
Confidence            4579999998 99999999999998 753 8999999863  234444544210                  122433  


Q ss_pred             CCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCccHHH
Q 018265          104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPI  172 (358)
Q Consensus       104 ~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~  172 (358)
                       ++| .+++++||+||++.+.|.....++    ..++..+...++.|.++. |..+|++- |-|.+..-.+
T Consensus        93 -ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v  157 (478)
T 3g79_A           93 -TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGM  157 (478)
T ss_dssp             -ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTH
T ss_pred             -eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHH
Confidence             456 588999999999988775433210    012344555555666554 45554443 4565554333

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.09  E-value=1.5e-05  Score=75.81  Aligned_cols=163  Identities=10%  Similarity=0.042  Sum_probs=95.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC-----CCCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-----GMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-----~aDiV  118 (358)
                      +.|||.|+||+|++|++++..|+..| .  +|+++|++........+.......++.   ....++++++     ++|+|
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~V  119 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAI  119 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCCSEEEE---HHHHHHHHHTTCCCSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceEeeecC---cHHHHHHHHhhcccCCCCEE
Confidence            45799999999999999999999988 5  889998765221111121111111121   1223455565     59999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC-------ccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN-------STVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d-------~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      |++|+..........+.+..|+.....+++.+.+...  .+|++|...-       .+.        ......+...+|.
T Consensus       120 ih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~SS~~v~g~~~~~~~~--------E~~~~~p~~~Y~~  189 (357)
T 2x6t_A          120 FHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIE--------SREYEKPLNVFGY  189 (357)
T ss_dssp             EECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGCSCSSCCCS--------SGGGCCCSSHHHH
T ss_pred             EECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcchHHhCCCCCCCcC--------CcCCCCCCChhHH
Confidence            9999865433344566778899999999999988755  4555442210       000        0000112334555


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      +.....++...+++..|++..-++ ..++|..
T Consensus       190 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~  221 (357)
T 2x6t_A          190 SKFLFDEYVRQILPEANSQIVGFRYFNVYGPR  221 (357)
T ss_dssp             HHHHHHHHHHHHGGGCSSCEEEEEECEEESSS
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEecCeEECCC
Confidence            555555555555555566555554 4577754

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.09  E-value=1.6e-05  Score=76.60  Aligned_cols=169  Identities=16%  Similarity=0.069  Sum_probs=100.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVI  119 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVI  119 (358)
                      .++|||.|+||+|++|++++..|+..|.  +|+++|++......  +..    ..+..+..    ..++.++++++|+||
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~v~~~~~Dl~d~~~~~~~~~~~d~Vi   98 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT--EDM----FCDEFHLVDLRVMENCLKVTEGVDHVF   98 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC--GGG----TCSEEEECCTTSHHHHHHHHTTCSEEE
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh--hcc----CCceEEECCCCCHHHHHHHhCCCCEEE
Confidence            3567999999999999999999999886  99999986521110  111    11111111    123567789999999


Q ss_pred             EcCCCCCCC---CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH-----HHHHHhC--CCCCCcEE
Q 018265          120 IPAGVPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA-----EVFKKVG--TYDPKRLL  189 (358)
Q Consensus       120 i~ag~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~-----~~~~~~~--~~p~~kvi  189 (358)
                      ++++.....   .....+.+..|+.....+++.+.+.... .+|++|... +...-..     ..+....  ..++...+
T Consensus        99 h~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~~-v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y  176 (379)
T 2c5a_A           99 NLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSAC-IYPEFKQLETTNVSLKESDAWPAEPQDAF  176 (379)
T ss_dssp             ECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGG-GSCGGGSSSSSSCEECGGGGSSBCCSSHH
T ss_pred             ECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeehh-eeCCCCCCCccCCCcCcccCCCCCCCChh
Confidence            999864321   2335566788999999999999876543 455544321 1000000     0000000  12233445


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      |.+.....++...+++..|++..-++ ..++|..
T Consensus       177 ~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~  210 (379)
T 2c5a_A          177 GLEKLATEELCKHYNKDFGIECRIGRFHNIYGPF  210 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcC
Confidence            55555556666666777777655554 4677754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.08  E-value=2.4e-05  Score=72.06  Aligned_cols=165  Identities=16%  Similarity=0.153  Sum_probs=92.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  112 (358)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++........+..+.. -+|   .++++     
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~  107 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS  107 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  899999875  2222233332211123333211 122   22233     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHH
Q 018265          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                        .+.|+||.++|.....   ..+   -...+..|+..    .+.+.+.+++... .+.||+++......          
T Consensus       108 ~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~----------  177 (279)
T 1xg5_A          108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR----------  177 (279)
T ss_dssp             HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS----------
T ss_pred             hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcc----------
Confidence              2799999999864321   112   23345666665    7777788876653 46777766433210          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ....+..-.++.+......+...++..+......|++.++-
T Consensus       178 ~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~  218 (279)
T 1xg5_A          178 VLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCIS  218 (279)
T ss_dssp             CCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             cCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEe
Confidence            00111122233433333445566666664334556655554

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.08  E-value=2.1e-05  Score=72.97  Aligned_cols=98  Identities=19%  Similarity=0.191  Sum_probs=68.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||.|+||+|+||++++..|...|.  +|+.+.++...+            .+..  ...+ .++++++|.||++++.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~------------~~~~--~~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPG------------RITW--DELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTT------------EEEH--HHHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcC------------eeec--chhh-HhhccCCCEEEEeccCcc
Confidence            8999999999999999999999998  888887654211            1111  0112 467899999999987432


Q ss_pred             C-----CC-CCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEE
Q 018265          127 K-----PG-MTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNL  161 (358)
Q Consensus       127 ~-----~g-~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv  161 (358)
                      .     .. ....+....|+...+.+.+.+.+... ..+++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~  105 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVL  105 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEE
Confidence            1     11 12345667788999999988887653 333443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.07  E-value=3e-05  Score=76.73  Aligned_cols=116  Identities=18%  Similarity=0.197  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----------------CCCeEEEEeCCCcH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQL  108 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~t~d~  108 (358)
                      ++.+|+|||. |+||..+|..++..|.  +++.+|+++.  .+..|+...                ...+++.   ++|+
T Consensus        20 ~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~--kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~---tt~~   91 (444)
T 3vtf_A           20 HMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPS--IVERLRAGRPHIYEPGLEEALGRALSSGRLSF---AESA   91 (444)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---CSSH
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHH--HHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE---EcCH
Confidence            4559999998 9999999999998888  9999999861  111222211                1123443   5788


Q ss_pred             HhhhCCCCEEEEcCCCCCCCC-CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCCCCccHH
Q 018265          109 EDALTGMDIVIIPAGVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVP  171 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~t~  171 (358)
                      ++++++||++|++.+.|.... ...+..+   ....+.+++.++..++..+|++ .|-|....-.
T Consensus        92 ~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~  153 (444)
T 3vtf_A           92 EEAVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEG  153 (444)
T ss_dssp             HHHHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTT
T ss_pred             HHHHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHH
Confidence            899999999999999886543 2222222   3455667777765554444433 4677766543

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.07  E-value=1.3e-05  Score=79.96  Aligned_cols=169  Identities=11%  Similarity=0.035  Sum_probs=100.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhH-HHHHhcCC--------------CCCeEEEEeCC-
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGV-TADISHMD--------------TNAVVRGFLGQ-  105 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~-~~dl~~~~--------------~~~~v~~~~~t-  105 (358)
                      ..++++|.|+||+|++|++++..|+..+. ..+|++++++..... ...+.+..              ....+..+.+. 
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl  149 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK  149 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence            45578999999999999999999988721 139999998762111 11111110              01234333221 


Q ss_pred             ---------CcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHH
Q 018265          106 ---------QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       106 ---------~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~  176 (358)
                               .++.++++++|+||++|+....  ....+.+..|+.....+++.+.+...+.+|.+.|--+....      
T Consensus       150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~------  221 (478)
T 4dqv_A          150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAI------  221 (478)
T ss_dssp             TSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTS------
T ss_pred             CCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCcc------
Confidence                     1345677899999999986533  23335678899999999999988765544444342110000      


Q ss_pred             HHHhCCCCCC-----------------cEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEe
Q 018265          177 FKKVGTYDPK-----------------RLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGG  221 (358)
Q Consensus       177 ~~~~~~~p~~-----------------kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~  221 (358)
                        ....++++                 ..+|.+.....++...+++..|++..-++ ..|+|.
T Consensus       222 --~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~  282 (478)
T 4dqv_A          222 --EPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILAD  282 (478)
T ss_dssp             --CTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECC
T ss_pred             --CCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCC
Confidence              00001111                 22555555566666777776788766664 567774

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.06  E-value=9.5e-06  Score=79.07  Aligned_cols=132  Identities=18%  Similarity=0.293  Sum_probs=67.8

Q ss_pred             chhhHHHHHHHhhcCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCC------CcEEEEEe
Q 018265            6 SGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL------VSVLHLYD   79 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~------~~el~L~D   79 (358)
                      |.|++||.....||.++.-+-..+.        ...--.+|.||+|||| |.-|.++|..|..++.      ..+|.|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~   72 (391)
T 4fgw_A            2 SAAADRLNLTSGHLNAGRKRSSSSV--------SLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWV   72 (391)
T ss_dssp             ---------------------------------------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEEC
T ss_pred             cchhhHHHHHhhhhccccccccccc--------cccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEE
Confidence            5688999999888855544332221        1112345679999998 9999999999987542      13688887


Q ss_pred             CCC-c--hhHHHHHh--cCC--------CCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHH
Q 018265           80 VVN-T--PGVTADIS--HMD--------TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTL  146 (358)
Q Consensus        80 ~~~-~--~g~~~dl~--~~~--------~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i  146 (358)
                      .++ .  +..+..++  |..        .+..++.   ++|+++++++||+||+..  |              ...++++
T Consensus        73 r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~---t~dl~~al~~ad~ii~av--P--------------s~~~r~~  133 (391)
T 4fgw_A           73 FEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA---NPDLIDSVKDVDIIVFNI--P--------------HQFLPRI  133 (391)
T ss_dssp             CCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE---ESCHHHHHTTCSEEEECS--C--------------GGGHHHH
T ss_pred             cchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE---eCCHHHHHhcCCEEEEEC--C--------------hhhhHHH
Confidence            665 1  11222233  211        1234554   579999999999999974  3              2456777


Q ss_pred             HHHHHhhC-CCeEEEEecCC
Q 018265          147 CEGIAKCC-PKAIVNLISNP  165 (358)
Q Consensus       147 ~~~i~~~~-p~a~viv~tNP  165 (358)
                      +++++.+- ++..+|.++-=
T Consensus       134 l~~l~~~~~~~~~iv~~~KG  153 (391)
T 4fgw_A          134 CSQLKGHVDSHVRAISCLKG  153 (391)
T ss_dssp             HHHHTTTSCTTCEEEECCCS
T ss_pred             HHHhccccCCCceeEEeccc
Confidence            78887765 46667766533

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.06  E-value=8.3e-06  Score=72.22  Aligned_cols=101  Identities=19%  Similarity=0.244  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-----CCcHHhhhCCCCEEEEc
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-----QQQLEDALTGMDIVIIP  121 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-----t~d~~~al~~aDiVIi~  121 (358)
                      |||.|+||+|++|++++..|+..|.  +|++++++...     +...   ..+..+..     ..++.++++++|+||++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~-----~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQ-----VPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGG-----SCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccc-----hhhc---CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            6999999999999999999999886  99999987521     0110   12222111     12456788999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +|....      +.+..|+.....+++.+++.... .+|++|.
T Consensus        71 ag~~~~------~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGK------SLLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTTS------SCCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCCC------CcEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            987542      13455777777888888776533 5555554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.05  E-value=9.3e-06  Score=78.13  Aligned_cols=172  Identities=15%  Similarity=0.012  Sum_probs=101.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCCCCEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIV  118 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiV  118 (358)
                      .++|||.|+||+|++|++++..|+..| .  +|+++|++..... ..+..   ...+..+.+.    .++.++++++|+|
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~V  103 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYV  103 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEE
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEE
Confidence            456799999999999999999999988 6  9999987652110 11110   1233332211    2345677899999


Q ss_pred             EEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHH--HhC---CC-CCCcEE
Q 018265          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFK--KVG---TY-DPKRLL  189 (358)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~--~~~---~~-p~~kvi  189 (358)
                      |++++.....  ..+..+.+..|+.....+++.+.+. ... .+|++|... +...--...+.  ...   .. ++...+
T Consensus       104 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~~~~~~Y  181 (377)
T 2q1s_A          104 FHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGC-SIAEKTFDDAKATEETDIVSLHNNDSPY  181 (377)
T ss_dssp             EECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC---------------CCCCCCCSSCCCSHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHH-HcCCCCCCCcCcccccccccccCCCCch
Confidence            9999864211  0134556788999999999999876 333 455554321 11000000000  110   11 233456


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      |.+.....++...+++..|++..-++ ..++|...
T Consensus       182 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          182 SMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            66666666666677777787766664 56788654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.04  E-value=3.1e-05  Score=73.00  Aligned_cols=115  Identities=16%  Similarity=0.080  Sum_probs=75.7

Q ss_pred             CCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhC--C
Q 018265           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALT--G  114 (358)
Q Consensus        41 ~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~--~  114 (358)
                      +.+.+.|+|.|+||+|++|++++..|+..|.  +|+++|++.....  ++....  ..+..+...    .++.++++  +
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~   88 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFDSFK   88 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHhhcC
Confidence            3455668999999999999999999999886  9999998541110  011100  122222111    23456677  9


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +|+||++||..........+ +..|+.....+++.+.+... ..+|++|
T Consensus        89 ~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~S  135 (330)
T 2pzm_A           89 PTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGV-KRLLNFQ  135 (330)
T ss_dssp             CSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTC-SEEEEEE
T ss_pred             CCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCC-CEEEEec
Confidence            99999999865322222333 67899999999999987653 3555554

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.04  E-value=6.9e-06  Score=76.77  Aligned_cols=170  Identities=12%  Similarity=0.088  Sum_probs=98.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCC--C
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTG--M  115 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~--a  115 (358)
                      ++.+.++|.|+||+|++|++++..|+..|.  +|+++|++.....   +       .+..+..    ..++.+++++  .
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~---l-------~~~~~~~Dl~d~~~~~~~~~~~~~   75 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEAKL---P-------NVEMISLDIMDSQRVKKVISDIKP   75 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTCCC---T-------TEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccc---c-------eeeEEECCCCCHHHHHHHHHhcCC
Confidence            556778999999999999999999999887  9999998652111   1       1222111    1234456665  8


Q ss_pred             CEEEEcCCCCCC--CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHH-HHHHHHHhCCCCCCcEEEee
Q 018265          116 DIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI-AAEVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       116 DiVIi~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~-~~~~~~~~~~~p~~kviG~t  192 (358)
                      |+||++|+....  ......+.+..|+.....+++.+.+......+|++|...-.-... -...+......++...+|.+
T Consensus        76 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~s  155 (321)
T 2pk3_A           76 DYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVS  155 (321)
T ss_dssp             SEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHH
T ss_pred             CEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHH
Confidence            999999986431  112345677889999999999997664345666654321000000 00000001112334456666


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      .....++...+++..|++..-++ ..++|...
T Consensus       156 K~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~  187 (321)
T 2pk3_A          156 KASVGMLARQYVKAYGMDIIHTRTFNHIGPGQ  187 (321)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEeCcccCcCC
Confidence            55666666666766676655554 36777543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.03  E-value=2e-05  Score=73.95  Aligned_cols=127  Identities=20%  Similarity=0.195  Sum_probs=74.0

Q ss_pred             cCCC-CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHH-hcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           38 CRAK-GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADI-SHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        38 ~~~~-~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl-~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      ++++ |...-+||+|||+ |.+|+.+|..++ .|+  +|+++|+++ ......+. .+. ....++.   ++|+++ +++
T Consensus         3 ~~~~~~~~~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~-~~~~i~~---~~~~~~-~~~   73 (293)
T 1zej_A            3 SDKIHHHHHHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEE-LLSKIEF---TTTLEK-VKD   73 (293)
T ss_dssp             ---------CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGG-GGGGEEE---ESSCTT-GGG
T ss_pred             ccccccccCCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHH-HhCCeEE---eCCHHH-HcC
Confidence            3445 3344579999998 999999999999 888  999999986 11122222 111 0113443   246654 899


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeec
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~l  194 (358)
                      ||+||.+..              ++..+.+.+...+... |++++  +||-..+-...    +...... +.+++|+..+
T Consensus        74 aDlVieavp--------------e~~~vk~~l~~~l~~~-~~~Il--asntSti~~~~----~a~~~~~-~~r~~G~Hf~  131 (293)
T 1zej_A           74 CDIVMEAVF--------------EDLNTKVEVLREVERL-TNAPL--CSNTSVISVDD----IAERLDS-PSRFLGVHWM  131 (293)
T ss_dssp             CSEEEECCC--------------SCHHHHHHHHHHHHTT-CCSCE--EECCSSSCHHH----HHTTSSC-GGGEEEEEEC
T ss_pred             CCEEEEcCc--------------CCHHHHHHHHHHHhcC-CCCEE--EEECCCcCHHH----HHHHhhc-ccceEeEEec
Confidence            999999842              2355566666667777 88865  34544332211    1222222 3577787654


Q ss_pred             c
Q 018265          195 D  195 (358)
Q Consensus       195 d  195 (358)
                      +
T Consensus       132 ~  132 (293)
T 1zej_A          132 N  132 (293)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.02  E-value=3.3e-05  Score=73.06  Aligned_cols=170  Identities=12%  Similarity=0.011  Sum_probs=97.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ++++||.|+||+|++|++++..|+..|.  +|+++|++..  .....++..   ...+..+...- ...++.++|+||++
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~-~~~~~~~~d~vih~   98 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRNVEHWIG---HENFELINHDV-VEPLYIEVDQIYHL   98 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGGTGGGTT---CTTEEEEECCT-TSCCCCCCSEEEEC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccchhhhhhhcc---CCceEEEeCcc-CChhhcCCCEEEEC
Confidence            3467999999999999999999999887  8999997641  111111111   12333332211 12457899999999


Q ss_pred             CCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHH----HHHHHHH-HhCCCCCCcEEEeeec
Q 018265          122 AGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP----IAAEVFK-KVGTYDPKRLLGVTML  194 (358)
Q Consensus       122 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~----~~~~~~~-~~~~~p~~kviG~t~l  194 (358)
                      |+.....  .......+..|+.....+++.+.+...  .+|++|.-. +...    ...+..+ .....++...+|.+..
T Consensus        99 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~-v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~  175 (343)
T 2b69_A           99 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSE-VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKR  175 (343)
T ss_dssp             CSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGG-GGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHH
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECcHH-HhCCCCCCCCcccccccCCCCCCCCchHHHHH
Confidence            9864311  123345678899999999999988753  555554311 1000    0000000 0001112234555555


Q ss_pred             cHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          195 DVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       195 ds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      ...++...+++..|++..-++ ..++|..
T Consensus       176 ~~E~~~~~~~~~~~~~~~ilrp~~v~G~~  204 (343)
T 2b69_A          176 VAETMCYAYMKQEGVEVRVARIFNTFGPR  204 (343)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHhCCcEEEEEEcceeCcC
Confidence            555666666777777655554 4577754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.02  E-value=2.7e-05  Score=77.63  Aligned_cols=120  Identities=17%  Similarity=0.220  Sum_probs=75.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhHH--HH----------HhcCCC-CCeEEEEeCCCcH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVT--AD----------ISHMDT-NAVVRGFLGQQQL  108 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~~--~d----------l~~~~~-~~~v~~~~~t~d~  108 (358)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++  . .+..  .+          +..... ....+.   ++|+
T Consensus        36 ~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~~  109 (463)
T 1zcj_A           36 PVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST  109 (463)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESCG
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCCH
Confidence            4569999998 9999999999999998  999999976  1 1110  00          111111 112232   3566


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                       +++++||+||++..              .+..+.+++.+.+..++ |+++|+  ||...+-+.-    +...... +.+
T Consensus       110 -~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii~--snTs~~~~~~----la~~~~~-~~~  167 (463)
T 1zcj_A          110 -KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFLC--TNTSALNVDD----IASSTDR-PQL  167 (463)
T ss_dssp             -GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEEE--ECCSSSCHHH----HHTTSSC-GGG
T ss_pred             -HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEEE--eCCCCcCHHH----HHHHhcC-Ccc
Confidence             67999999999862              24566677777788777 566543  5666654322    1222222 356


Q ss_pred             EEEee
Q 018265          188 LLGVT  192 (358)
Q Consensus       188 viG~t  192 (358)
                      ++|+.
T Consensus       168 ~ig~h  172 (463)
T 1zcj_A          168 VIGTH  172 (463)
T ss_dssp             EEEEE
T ss_pred             eEEee
Confidence            77763

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.01  E-value=3.6e-05  Score=71.26  Aligned_cols=167  Identities=10%  Similarity=0.052  Sum_probs=95.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC-----CCEEEEc
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG-----MDIVIIP  121 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~-----aDiVIi~  121 (358)
                      ||.|+||+|++|++++..|+..| .  +|+++++........++.......++.   ....+++++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999888 5  889998765221112222221111221   12335566664     9999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~  201 (358)
                      ++..........+.+..|+.....+++.+.+...  .+|++|... +...--...+.......+...+|.+.....++..
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~-v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~  152 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAA-TYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVR  152 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGG-GGTTCCSCBCSSGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeHH-HhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Confidence            9865433334566778899999999999988765  555554321 1000000000000001122344555555555555


Q ss_pred             HHHHHhCCCCCCCc-eEEEEec
Q 018265          202 FVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       202 ~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      .+++..|++..-++ ..++|..
T Consensus       153 ~~~~~~g~~~~~lrp~~v~G~~  174 (310)
T 1eq2_A          153 QILPEANSQIVGFRYFNVYGPR  174 (310)
T ss_dssp             HHGGGCSSCEEEEEECEEESSS
T ss_pred             HHHHHcCCCEEEEeCCcEECcC
Confidence            55555566555454 4577754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.00  E-value=6.3e-06  Score=75.32  Aligned_cols=94  Identities=18%  Similarity=0.274  Sum_probs=66.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      +|++|||+|||+ |.+|+.++..|...+..  .++.++|++...       .     .+..   +++.++++++||+||+
T Consensus         1 ~m~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~-----g~~~---~~~~~~~~~~~D~vi~   64 (262)
T 2rcy_A            1 GMENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T-----TLNY---MSSNEELARHCDIIVC   64 (262)
T ss_dssp             CCSSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S-----SSEE---CSCHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C-----ceEE---eCCHHHHHhcCCEEEE
Confidence            456789999998 99999999999887731  389999987632       1     1122   2466788899999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                      +.. +   .            .+.++++.+..+.++..++..+|.++.
T Consensus        65 ~v~-~---~------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           65 AVK-P---D------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             CSC-T---T------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             EeC-H---H------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            853 1   1            134455566666677778877888765

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.00  E-value=2.2e-05  Score=74.94  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCc-----hhHHHHHhcCC--C------CCeEEEEe
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT-----PGVTADISHMD--T------NAVVRGFL  103 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~~-----~g~~~dl~~~~--~------~~~v~~~~  103 (358)
                      +.|..|||+|||+ |.+|..++..|+..+.     ..+|.++|+++.     ....+.-.+..  .      ...+..  
T Consensus         4 ~~m~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--   80 (354)
T 1x0v_A            4 GSMASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA--   80 (354)
T ss_dssp             ---CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE--
T ss_pred             cccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE--
Confidence            3455689999998 9999999999988761     028999998763     33322211110  0      112333  


Q ss_pred             CCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 018265          104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (358)
Q Consensus       104 ~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  167 (358)
                       ++|+++++++||+||++.-.                ..+.++++.+..+. |+.+|+..+|-..
T Consensus        81 -~~~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           81 -VPDVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             -ESSHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             -EcCHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence             35677889999999998521                12455666676654 6788888888554

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.00  E-value=2.3e-05  Score=68.03  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=69.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  121 (358)
                      .|||.|+||+|++|++++..|+..+.  +|++++++....     ... ....+..+..    ..++.++++++|+||++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~-----~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~   74 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRL-----PSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGS-----CSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhc-----ccc-cCCceEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            37999999999999999999999886  999999865210     110 0112222211    12456778999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +|.......     ...|+.....+++.+.+.... .++++|
T Consensus        75 a~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           75 LGTRNDLSP-----TTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCCTTCCSC-----CCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             ccCCCCCCc-----cchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            886432111     135777888888888876543 455544

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.98  E-value=1.7e-05  Score=75.73  Aligned_cols=114  Identities=18%  Similarity=0.205  Sum_probs=76.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeCC----CcHHhhhCCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ----QQLEDALTGMD  116 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aD  116 (358)
                      .+.++|.|+||+|++|++++..|+.. |. .+|++++++...  ....++..    ..+..+.+.    .++.++++++|
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D   93 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVD   93 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCC
Confidence            45579999999999999999999887 63 289999987521  11222321    223332211    23457789999


Q ss_pred             EEEEcCCCCCCCC--CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       117 iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +||++|+....+.  ....+.+..|+.....+++...+.... .+|++|
T Consensus        94 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~S  141 (344)
T 2gn4_A           94 ICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALS  141 (344)
T ss_dssp             EEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Confidence            9999998653211  123567788999999999999887543 455554

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.97  E-value=2e-05  Score=69.53  Aligned_cols=100  Identities=20%  Similarity=0.246  Sum_probs=62.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      |||+||||+|.+|+.++..|...+.  ++.++|++...  ....++........+..    ++++++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            6999999559999999999998887  89999987521  11111110000012331    3567889999999998531


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                                      ..++++.+.+....++.+++..+|+.+.
T Consensus        75 ----------------~~~~~~~~~l~~~~~~~~vi~~~~g~~~  102 (212)
T 1jay_A           75 ----------------EHAIDTARDLKNILREKIVVSPLVPVSR  102 (212)
T ss_dssp             ----------------HHHHHHHHHTHHHHTTSEEEECCCCEEC
T ss_pred             ----------------hhHHHHHHHHHHHcCCCEEEEcCCCcCc
Confidence                            0122333334333357788888997763

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=97.97  E-value=9.6e-06  Score=78.27  Aligned_cols=177  Identities=11%  Similarity=0.068  Sum_probs=98.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh------------------HHHHHhcCCCCCeEEEEe
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------------------VTADISHMDTNAVVRGFL  103 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g------------------~~~dl~~~~~~~~v~~~~  103 (358)
                      ++.+.++|.|+||+|++|++++..|+..|.  +|+++|+.....                  ...++.... ...+..+.
T Consensus         7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~   83 (404)
T 1i24_A            7 HHHHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYV   83 (404)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEE
T ss_pred             cccCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEE
Confidence            566788999999999999999999999887  999998753110                  111111000 11222221


Q ss_pred             CC----CcHHhhhCC--CCEEEEcCCCCCCC--CCCH---HhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHH
Q 018265          104 GQ----QQLEDALTG--MDIVIIPAGVPRKP--GMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI  172 (358)
Q Consensus       104 ~t----~d~~~al~~--aDiVIi~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~  172 (358)
                      +.    .++.+++++  +|+||++||.....  ..+.   ...+..|+.....+++.+.+......+|++|... +....
T Consensus        84 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~-vyg~~  162 (404)
T 1i24_A           84 GDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMG-EYGTP  162 (404)
T ss_dssp             SCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGG-GGCCC
T ss_pred             CCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHH-HhCCC
Confidence            11    234456777  99999999864211  0111   2356789999999999998876434566655421 10000


Q ss_pred             HHHHHHHh--------------CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          173 AAEVFKKV--------------GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       173 ~~~~~~~~--------------~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                       ...+...              ...++...+|.+.....++...+++.+|++..-++ ..|+|...
T Consensus       163 -~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~  227 (404)
T 1i24_A          163 -NIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  227 (404)
T ss_dssp             -SSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             -CCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCC
Confidence             0000000              01122334555555555566666777787666564 56888643

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.97  E-value=0.0001  Score=68.67  Aligned_cols=119  Identities=19%  Similarity=0.288  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC----CC-----eEEEEeCCCcHHhhhCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----NA-----VVRGFLGQQQLEDALTGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~----~~-----~v~~~~~t~d~~~al~~a  115 (358)
                      ++|||+|||+ |.+|+.++..|...|.  +|.++|+++..  ...+.+...    ..     .+... ...+..++++++
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   75 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAH--IEAIRKNGLIADFNGEEVVANLPIF-SPEEIDHQNEQV   75 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHHCEEEEETTEEEEECCCEE-CGGGCCTTSCCC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhCCEEEEeCCCeeEecceee-cchhhcccCCCC
Confidence            3579999998 9999999999999887  99999987521  111211100    00     01111 011222334599


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE-Eee
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL-GVT  192 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kvi-G~t  192 (358)
                      |+||++...                ..+.++++.+..+. |+.+|+..+|..+...     .+.+  .+++.+++ |.+
T Consensus        76 d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~-----~l~~--~~~~~~vi~g~~  131 (316)
T 2ew2_A           76 DLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGHED-----VLEK--YVPKENILVGIT  131 (316)
T ss_dssp             SEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCTHH-----HHTT--TSCGGGEEEEEE
T ss_pred             CEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCcHH-----HHHH--HcCCccEEEEEe
Confidence            999998521                12455666777655 6788888888776432     1222  35556777 443

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.94  E-value=4.8e-05  Score=71.49  Aligned_cols=167  Identities=14%  Similarity=0.068  Sum_probs=97.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC--C---CcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--Q---QQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t---~d~~~al~~aDiVIi  120 (358)
                      |||.|+||+|++|++++..|+.. +.  +|+++|++....  .++..   ...+..+.+  +   ..++++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGG--GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchH--HHhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            68999999999999999999987 66  899999865211  11111   122322211  1   124567789999999


Q ss_pred             cCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC----C---CCCcEEEe
Q 018265          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT----Y---DPKRLLGV  191 (358)
Q Consensus       121 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~----~---p~~kviG~  191 (358)
                      +|+.....  ..+..+.+..|+.....+++.+.+..  ..+|++|... +........+.....    .   ++...+|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~  150 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSE-VYGMCSDKYFDEDHSNLIVGPVNKPRWIYSV  150 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGG-GGBTCCCSSBCTTTCCCBCCCTTCGGGHHHH
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecHH-HcCCCCCCCcCCcccccccCcccCcccccHH
Confidence            98864311  11334566778888889999888765  4666655421 100000000000000    0   01124555


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      +.....++...+++..|++..-++ ..++|...
T Consensus       151 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~  183 (345)
T 2bll_A          151 SKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL  183 (345)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECSEECSSC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCc
Confidence            655566666667777787766554 45788653

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=97.94  E-value=3.9e-05  Score=73.88  Aligned_cols=173  Identities=17%  Similarity=0.105  Sum_probs=99.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCch----------hHHHH-HhcCCC---CCe---EEEEeCC-C
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTP----------GVTAD-ISHMDT---NAV---VRGFLGQ-Q  106 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~~~----------g~~~d-l~~~~~---~~~---v~~~~~t-~  106 (358)
                      .|||.|+||+|++|++++..|+ ..|.  +|+++|++...          ....+ +.....   ...   +..+... +
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   79 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence            3699999999999999999999 8886  89999876421          11111 111100   001   3332221 2


Q ss_pred             ---cHHhhhC--C-CCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHH----H
Q 018265          107 ---QLEDALT--G-MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA----A  174 (358)
Q Consensus       107 ---d~~~al~--~-aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~----~  174 (358)
                         ++.++++  + +|+||++|+.....  .....+.+..|+.....+++.+.+.... .||++|. ..+.....    .
T Consensus        80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~SS-~~v~g~~~~~~~~  157 (397)
T 1gy8_A           80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSS-AAIFGNPTMGSVS  157 (397)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEE-GGGTBSCCC----
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEECC-HHHhCCCCccccc
Confidence               2345566  6 99999999864311  1233456788999999999998876543 4444432 11100000    0


Q ss_pred             ---HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          175 ---EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       175 ---~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                         ..+.......+...++.+.....++-..+++.+|++..-++ ..++|.+
T Consensus       158 ~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~  209 (397)
T 1gy8_A          158 TNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (397)
T ss_dssp             -CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             ccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCC
Confidence               00000001112345566666666777777777787665554 4678764

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=97.93  E-value=1.8e-05  Score=79.37  Aligned_cols=101  Identities=23%  Similarity=0.327  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHH-----HHhcCCCC------------CeEEEEeCCCc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA-----DISHMDTN------------AVVRGFLGQQQ  107 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~-----dl~~~~~~------------~~v~~~~~t~d  107 (358)
                      .+||+|||+ |.+|..+|..++..|+  +|+++|+++. .....     -+......            .+++.   ++|
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VTD   78 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---ECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eCC
Confidence            469999998 9999999999999998  9999999861 11111     11111100            12443   356


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCcc
Q 018265          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (358)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~  169 (358)
                      + +++++||+||.+..              .+..+.+++.+++.+++ |++++  +||-..+-
T Consensus        79 ~-~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntSti~  124 (483)
T 3mog_A           79 I-HALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTLL--TTNTSSIS  124 (483)
T ss_dssp             G-GGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC
T ss_pred             H-HHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcEE--EecCCCCC
Confidence            6 57999999999852              24566777788888877 56644  45555443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.93  E-value=2.6e-05  Score=69.08  Aligned_cols=97  Identities=21%  Similarity=0.267  Sum_probs=64.1

Q ss_pred             CE-EEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEEE
Q 018265           47 FK-VAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~K-I~IiGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi  120 (358)
                      || |.|+||+|++|+.++..|+ ..|.  +|++++++.. ....++...  ...+..+..    ..+++++++++|+||+
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~-~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLK-TRIPPEIID--HERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHH-HHSCHHHHT--STTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCcc-ccchhhccC--CCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            45 9999999999999999999 7887  8999998642 011222111  112222211    1345678899999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++|..             |+. .+.+++.+++.... .+|++|
T Consensus        80 ~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iS  107 (221)
T 3r6d_A           80 GAMES-------------GSD-MASIVKALSRXNIR-RVIGVS  107 (221)
T ss_dssp             SCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEe
Confidence            98743             344 77888888776543 455544

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=97.93  E-value=5e-06  Score=77.41  Aligned_cols=161  Identities=16%  Similarity=0.081  Sum_probs=93.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +++||.|+||+|++|++++..|+..|.  +|+.+|++...  +....+.+......+..      ...++.++|+||+++
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECC
Confidence            357999999999999999999999887  89999876421  10000111000011111      134456999999999


Q ss_pred             CCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-C-----C-ccHHHHHHHHHHhCCCCCCcEEEeee
Q 018265          123 GVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-V-----N-STVPIAAEVFKKVGTYDPKRLLGVTM  193 (358)
Q Consensus       123 g~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~-----d-~~t~~~~~~~~~~~~~p~~kviG~t~  193 (358)
                      +.....  .....+.+. |+.....+++.+.+.... .+|++|.. +     + .+.        ......+...+|.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~SS~~v~~~~~~~~~~--------E~~~~~p~~~Y~~sK  147 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGSTCEVYGQADTLPTP--------EDSPLSPRSPYAASK  147 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBC--------TTSCCCCCSHHHHHH
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEecCHHHhCCCCCCCCC--------CCCCCCCCChhHHHH
Confidence            864310  111223445 999999999999988744 44444321 1     0 110        111122344566666


Q ss_pred             ccHHHHHHHHHHHhCC-CCCCCc-eEEEEecC
Q 018265          194 LDVVRANTFVAEVLGL-DPREVD-VPVVGGHA  223 (358)
Q Consensus       194 lds~R~~~~lA~~l~v-~~~~v~-~~v~G~hg  223 (358)
                      ....++...+++..|+ +..-++ ..++|...
T Consensus       148 ~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~  179 (321)
T 3vps_A          148 VGLEMVAGAHQRASVAPEVGIVRFFNVYGPGE  179 (321)
T ss_dssp             HHHHHHHHHHHHSSSSCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEeccccCcCC
Confidence            6666666666666666 444443 46777543

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=97.92  E-value=3.4e-05  Score=72.72  Aligned_cols=117  Identities=21%  Similarity=0.207  Sum_probs=74.8

Q ss_pred             CCCCCCCEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhh
Q 018265           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDA  111 (358)
Q Consensus        41 ~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a  111 (358)
                      .-+++.|+|.|+||+|++|++++..|+..|.     ..+|+++|++......     . ....+..+..    ..+++++
T Consensus         9 ~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----~-~~~~~~~~~~Dl~d~~~~~~~   82 (342)
T 2hrz_A            9 NLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----G-FSGAVDARAADLSAPGEAEKL   82 (342)
T ss_dssp             CSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----T-CCSEEEEEECCTTSTTHHHHH
T ss_pred             CCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----c-cCCceeEEEcCCCCHHHHHHH
Confidence            3356678999999999999999999988771     0289999986521110     0 1123332211    1234556


Q ss_pred             h-CCCCEEEEcCCCCCCC-CCCHHhHHHHHHHHHHHHHHHHHhhC----CCeEEEEec
Q 018265          112 L-TGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCC----PKAIVNLIS  163 (358)
Q Consensus       112 l-~~aDiVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~t  163 (358)
                      + .++|+||++|+..... .......+..|+.....+++.+.+..    +...+|++|
T Consensus        83 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           83 VEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             HHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             HhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            6 4899999999864210 11234456778888889988888764    234555554

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.92  E-value=1e-05  Score=74.54  Aligned_cols=101  Identities=21%  Similarity=0.172  Sum_probs=71.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVI  119 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVI  119 (358)
                      +-...+||.|+||+|++|++++..|+..|.  +|+.+|++.     .|+.+            ..+++++++  ++|+||
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d------------~~~~~~~~~~~~~d~vi   68 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITN------------VLAVNKFFNEKKPNVVI   68 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTC------------HHHHHHHHHHHCCSEEE
T ss_pred             cccccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCC------------HHHHHHHHHhcCCCEEE
Confidence            345568999999999999999999998886  899998752     12211            123456676  799999


Q ss_pred             EcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++++.....  .....+.+..|+.....+++.+.+...  .+|++|
T Consensus        69 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           69 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            999864210  123455678899999999999988754  566554

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=97.92  E-value=7.3e-05  Score=71.17  Aligned_cols=163  Identities=15%  Similarity=0.029  Sum_probs=89.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCC--CCCeEEEEeCC----CcHHhhhCC--
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD--TNAVVRGFLGQ----QQLEDALTG--  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~--~~~~v~~~~~t----~d~~~al~~--  114 (358)
                      +++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....  ....+..+...    .++.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            36899999999999999999999886  99999876421   1111111100  01223332111    233455654  


Q ss_pred             CCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCC--eEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPK--AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~--a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      .|+||++||.....  .......+..|+.....+++.+.+...+  ..+|++|... +........+......++...+|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~-v~g~~~~~~~~E~~~~~~~~~Y~  157 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSE-LYGLVQEIPQKETTPFYPRSPYA  157 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGG-GGTTCCSSSBCTTSCCCCCSHHH
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChh-hhCCCCCCCCCccCCCCCCChHH
Confidence            69999999864321  1234456678989999999999877542  5666655321 00000000000011122334556


Q ss_pred             eeeccHHHHHHHHHHHhCCCC
Q 018265          191 VTMLDVVRANTFVAEVLGLDP  211 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~  211 (358)
                      .+.....++...+++.++++.
T Consensus       158 ~sK~~~e~~~~~~~~~~~~~~  178 (372)
T 1db3_A          158 VAKLYAYWITVNYRESYGMYA  178 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCE
T ss_pred             HHHHHHHHHHHHHHHHhCCCe
Confidence            666566666667777777654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.92  E-value=5.5e-05  Score=69.10  Aligned_cols=162  Identities=18%  Similarity=0.112  Sum_probs=89.3

Q ss_pred             cCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hhh
Q 018265           38 CRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDA  111 (358)
Q Consensus        38 ~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a  111 (358)
                      .++....+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|.   +++
T Consensus        21 ~~~m~~l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~   96 (262)
T 3rkr_A           21 DKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAF   96 (262)
T ss_dssp             ----CTTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHH
T ss_pred             cchhhccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHH
Confidence            3333445567899999999999999999999987  899999876  223333443321  23333211 1222   222


Q ss_pred             h-------CCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHHHHHHH----HHHhhCCCeEEEEecCCCCccHHHH
Q 018265          112 L-------TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIA  173 (358)
Q Consensus       112 l-------~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~d~~t~~~  173 (358)
                      +       ...|+||+.||.....+    .+   -...+..|+.....+.+    .+.+. ..+.||++|......    
T Consensus        97 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~----  171 (262)
T 3rkr_A           97 ATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSLAGKN----  171 (262)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSSCSSC----
T ss_pred             HHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEechhhcC----
Confidence            2       35899999998732211    12   22345556554444444    44433 456777776554332    


Q ss_pred             HHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          174 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       174 ~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                              +.+..-.++.+......+...++..++  +..|++.+
T Consensus       172 --------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v~~  206 (262)
T 3rkr_A          172 --------PVADGAAYTASKWGLNGLMTSAAEELR--QHQVRVSL  206 (262)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEE
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCcEEEE
Confidence                    233333444544334456667777763  33454433

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.91  E-value=3.3e-05  Score=72.76  Aligned_cols=69  Identities=14%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ...++|||+|||+ |.+|..++..|+..|.  +|.++|++.....  ++....    +..   .+++++++++||+||++
T Consensus        17 ~~~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~g----~~~---~~~~~~~~~~aDvvi~~   84 (310)
T 3doj_A           17 RGSHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCD--ELVEHG----ASV---CESPAEVIKKCKYTIAM   84 (310)
T ss_dssp             -CCCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEEC
T ss_pred             ccccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CeE---cCCHHHHHHhCCEEEEE
Confidence            4556789999998 9999999999999988  9999998762222  222211    122   35678999999999998


Q ss_pred             C
Q 018265          122 A  122 (358)
Q Consensus       122 a  122 (358)
                      .
T Consensus        85 v   85 (310)
T 3doj_A           85 L   85 (310)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.91  E-value=2.9e-05  Score=72.23  Aligned_cols=98  Identities=14%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++|||+|||+ |.+|.+++..|...++ ..+|.++|++...  ..++.+. .  .+..   ++|..+++++||+||++. 
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~-~--gi~~---~~~~~~~~~~aDvVilav-   71 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEK-C--GVHT---TQDNRQGALNADVVVLAV-   71 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHT-T--CCEE---ESCHHHHHSSCSEEEECS-
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHH-c--CCEE---eCChHHHHhcCCeEEEEe-
Confidence            4689999998 9999999999998885 4589999987622  2222221 1  1222   245678899999999985 


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhh--CCCeEEEEecCCCC
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVN  167 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d  167 (358)
                       +  +            ..+.++++.+..+  .++.+|+.+++.+.
T Consensus        72 -~--p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           72 -K--P------------HQIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             -C--G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             -C--H------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence             1  1            1234444555544  35667776666665

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.91  E-value=1.8e-05  Score=70.81  Aligned_cols=115  Identities=18%  Similarity=0.127  Sum_probs=74.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +.++|.|+||+|++|++++..|+..|...+|+++|++............   ..+.. .....+++++++++|+||+++|
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~---~~~~~D~~d~~~~~~~~~~~d~vi~~ag   93 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV---NQEVVDFEKLDDYASAFQGHDVGFCCLG   93 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC---EEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCc---eEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence            3469999999999999999999988865589999987521100000110   00110 1112345677889999999998


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      .... +....+.+..|+.....+++.+.+... ..++++|.
T Consensus        94 ~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~iv~~SS  132 (242)
T 2bka_A           94 TTRG-KAGAEGFVRVDRDYVLKSAELAKAGGC-KHFNLLSS  132 (242)
T ss_dssp             CCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             cccc-cCCcccceeeeHHHHHHHHHHHHHCCC-CEEEEEcc
Confidence            6421 112345567788888899988877653 35555554

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.91  E-value=5.1e-05  Score=71.52  Aligned_cols=111  Identities=16%  Similarity=0.051  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-C---cHHhhhCC--CCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-Q---QLEDALTG--MDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~al~~--aDiV  118 (358)
                      ++|||.|+||+|++|++++..|+..|.  +|+++|++..... ..+...   ..+..+... +   ++.+++++  +|+|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGRR-EHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDAV   93 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccch-hhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence            457999999999999999999999886  9999998641100 011111   122222111 2   34566777  9999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      |++||..........+ +..|+.....+++.+.+... ..+|++|
T Consensus        94 ih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~S  136 (333)
T 2q1w_A           94 VHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNV-GRFVYFQ  136 (333)
T ss_dssp             EECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTC-SEEEEEE
T ss_pred             EECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCC-CEEEEEC
Confidence            9999865322122223 77899999999999887643 3555554

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.91  E-value=5.2e-06  Score=79.57  Aligned_cols=135  Identities=18%  Similarity=0.151  Sum_probs=88.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||.|+||+|++|++++..|+..|.. +++.+|++           .          ...+++++++++|+||++++...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~-----------~----------d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ-----------T----------KEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT-----------C----------CHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC-----------C----------CHHHHHHHhccCCEEEECCcCCC
Confidence            79999999999999999999887742 78888763           0          11345677889999999998654


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC-CCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHH
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE  205 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~  205 (358)
                      ..  ...+....|+...+.+++.+++......++.+|.- +..                 ...+|.+.....++...+++
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~-----------------~~~Y~~sK~~~E~~~~~~~~  119 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ-----------------DNPYGESKLQGEQLLREYAE  119 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS-----------------CSHHHHHHHHHHHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC-----------------CCCchHHHHHHHHHHHHHHH
Confidence            21  22334456888888999999887655456655421 111                 12233344444555556666


Q ss_pred             HhCCCCCCCc-eEEEEec
Q 018265          206 VLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       206 ~l~v~~~~v~-~~v~G~h  222 (358)
                      ..|++..-++ ..++|..
T Consensus       120 ~~g~~~~i~R~~~v~G~~  137 (369)
T 3st7_A          120 EYGNTVYIYRWPNLFGKW  137 (369)
T ss_dssp             HHCCCEEEEEECEEECTT
T ss_pred             HhCCCEEEEECCceeCCC
Confidence            6666555444 3566644

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.91  E-value=9.2e-05  Score=73.45  Aligned_cols=112  Identities=15%  Similarity=0.162  Sum_probs=73.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--C--------------CCeEEEEeCCCcH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------NAVVRGFLGQQQL  108 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~--------------~~~v~~~~~t~d~  108 (358)
                      ...+|+|||+ |.+|..+|..|+..|.  +++++|+++.+  +..+....  .              ...++.   ++|+
T Consensus         7 ~~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~k--v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~   78 (446)
T 4a7p_A            7 GSVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARK--IELLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDL   78 (446)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTT--HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCH
T ss_pred             CceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCH
Confidence            3569999998 9999999999999998  99999998722  12222211  0              122443   4688


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCcc
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNST  169 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~  169 (358)
                      ++++++||+||++.+.|...+...     -++..+++.++.|.++. +..+|+.- |-|.+..
T Consensus        79 ~ea~~~aDvvii~Vptp~~~~~~~-----~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt  136 (446)
T 4a7p_A           79 AEGVKDADAVFIAVGTPSRRGDGH-----ADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTG  136 (446)
T ss_dssp             HHHHTTCSEEEECCCCCBCTTTCC-----BCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHH
T ss_pred             HHHHhcCCEEEEEcCCCCccccCC-----ccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHH
Confidence            899999999999988775421111     12345555566666655 45555544 4555443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=97.90  E-value=4.1e-05  Score=80.52  Aligned_cols=101  Identities=22%  Similarity=0.367  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHH--HH-HhcCC------------CCCeEEEEeCCCc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVT--AD-ISHMD------------TNAVVRGFLGQQQ  107 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~--~d-l~~~~------------~~~~v~~~~~t~d  107 (358)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+..  .+ +....            ...+++.   ++|
T Consensus       312 ~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~d  385 (725)
T 2wtb_A          312 IKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG---SLD  385 (725)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE---ESS
T ss_pred             CcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE---eCC
Confidence            468999998 9999999999999998  9999999861   1110  11 11000            0123443   356


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCcc
Q 018265          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNST  169 (358)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~  169 (358)
                      + +++++||+||++.-              .+..+.+++...+.++++ ++++  +||...+-
T Consensus       386 ~-~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl~  431 (725)
T 2wtb_A          386 Y-ESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL--ASNTSTID  431 (725)
T ss_dssp             S-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC
T ss_pred             H-HHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EeCCCCCC
Confidence            6 68999999999852              245667777788888874 6643  57766543

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=97.89  E-value=2.6e-05  Score=72.75  Aligned_cols=159  Identities=15%  Similarity=0.157  Sum_probs=94.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~a  122 (358)
                      +.|||.|+||+|++|++++..|+..|.  ++++++.+. .   .|+.+            ..++.++++  ++|+||+++
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~-~---~D~~d------------~~~~~~~~~~~~~d~vih~a   63 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRD-E---LNLLD------------SRAVHDFFASERIDQVYLAA   63 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTT-T---CCTTC------------HHHHHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCc-c---CCccC------------HHHHHHHHHhcCCCEEEEcC
Confidence            457999999999999999999998887  788877542 1   12211            123556777  999999999


Q ss_pred             CCCCCC---CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcc----HHHHHHHHHHhCCCCC-CcEEEeeec
Q 018265          123 GVPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST----VPIAAEVFKKVGTYDP-KRLLGVTML  194 (358)
Q Consensus       123 g~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~----t~~~~~~~~~~~~~p~-~kviG~t~l  194 (358)
                      +.....   .....+.+..|+.....+++.+.+.... .+|++|...-.-    .++ .+-........+ ...+|.+..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~-~E~~~~~~~~~p~~~~Y~~sK~  141 (321)
T 1e6u_A           64 AKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPM-AESELLQGTLEPTNEPYAIAKI  141 (321)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSB-CGGGTTSSCCCGGGHHHHHHHH
T ss_pred             eecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccHHHcCCCCCCCc-CccccccCCCCCCCCccHHHHH
Confidence            864311   1234556778999999999999886533 555555321000    000 000000000111 124555555


Q ss_pred             cHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          195 DVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       195 ds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      ...++...+++..|++..-++ ..++|...
T Consensus       142 ~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~  171 (321)
T 1e6u_A          142 AGIKLCESYNRQYGRDYRSVMPTNLYGPHD  171 (321)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCcCCcCC
Confidence            555666666666777665554 46787543

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.86  E-value=4.7e-05  Score=70.62  Aligned_cols=98  Identities=12%  Similarity=0.083  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |++|||+|||+ |.+|..++..|...+...+|.++|++...  ...+.......  ..   ++|+++++++||+||++..
T Consensus         4 M~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~--~~~~~~~g~~~--~~---~~~~~~~~~~aDvVilavp   75 (290)
T 3b1f_A            4 MEEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRS--RDIALERGIVD--EA---TADFKVFAALADVIILAVP   75 (290)
T ss_dssp             GCCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHH--HHHHHHTTSCS--EE---ESCTTTTGGGCSEEEECSC
T ss_pred             cccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHH--HHHHHHcCCcc--cc---cCCHHHhhcCCCEEEEcCC
Confidence            45689999998 99999999999877433489999987521  11222211101  11   2456678899999999852


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhh-C-CCeEEEEecCC
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-C-PKAIVNLISNP  165 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~-p~a~viv~tNP  165 (358)
                      .                ....++++.+..+ . |+.+|+.++|-
T Consensus        76 ~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           76 I----------------KKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             H----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             H----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence            1                1235566666665 3 67776665553

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=97.86  E-value=3.2e-05  Score=72.00  Aligned_cols=103  Identities=15%  Similarity=0.120  Sum_probs=57.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC--CCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~--aDiVIi~ag~  124 (358)
                      |||.|+||+|++|++++..|+..|.  +|+++|++...+   ...    ..++..   ..++.+++++  +|+||+++|.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~~~----~~Dl~d---~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---KFE----QVNLLD---SNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC--
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---CeE----EecCCC---HHHHHHHHHhhCCCEEEECCcc
Confidence            6899999999999999999999886  999998654211   000    011111   1234566764  8999999986


Q ss_pred             CCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       125 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ....  .....+.+..|+.....+++.+.+...  .+|++|
T Consensus        71 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           71 RRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             -----------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            4321  123345667799999999999887653  566554

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=97.85  E-value=1.4e-05  Score=74.53  Aligned_cols=162  Identities=16%  Similarity=0.065  Sum_probs=95.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhC--CCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi~ag  123 (358)
                      |||.|+||+|++|++++..|+..|.  +|+++|..... ....+... . ..+.. .....+++++++  ++|+||++++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~~~-~-~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVPKG-V-PFFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSCTT-C-CEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhcccC-e-EEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            6899999999999999999999887  89999874311 00111100 0 01110 000123445666  8999999987


Q ss_pred             CCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC--------CC-ccHHHHHHHHHHhCCCCCCcEEEee
Q 018265          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP--------VN-STVPIAAEVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       124 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP--------~d-~~t~~~~~~~~~~~~~p~~kviG~t  192 (358)
                      .....  .......+..|+.....+++.+.+.... .+|++|..        .+ ..+        .....++...+|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~~g~~~~~~~~~--------E~~~~~~~~~Y~~s  146 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAE--------ETWPPRPKSPYAAS  146 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHHHHCCCCTTCCBC--------TTSCCCCCSHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChhhcCCCCCCCCcC--------CCCCCCCCChHHHH
Confidence            54210  0123456778999999999998876543 45554432        00 000        00011233456666


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      .....++...+++..|++..-++ ..++|..
T Consensus       147 K~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          147 KAAFEHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            66666666677777787666564 4677754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=97.85  E-value=7.9e-05  Score=69.38  Aligned_cols=115  Identities=10%  Similarity=-0.034  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCch-hHHHHHhcCCC-CCeEEEEe----CCCcHHhhhCCCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTP-GVTADISHMDT-NAVVRGFL----GQQQLEDALTGMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~~~-g~~~dl~~~~~-~~~v~~~~----~t~d~~~al~~aDiVI  119 (358)
                      +||.|+||+|++|++++..|+..|.  +|+.+++ +... .....+..... ...+..+.    ...+++++++++|+||
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   79 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF   79 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence            4899999999999999999999887  8888776 4310 00001111100 01122211    1235667889999999


Q ss_pred             EcCCCCCCCCCC-HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          120 IPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       120 i~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++|+........ ..+.+..|+.....+++.+.+...-..+|++|
T Consensus        80 h~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~S  124 (322)
T 2p4h_X           80 HTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS  124 (322)
T ss_dssp             ECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             EcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            998642111111 22367889999999999988762123555554

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.84  E-value=0.00015  Score=65.82  Aligned_cols=157  Identities=17%  Similarity=0.152  Sum_probs=91.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQ---QLEDALT-------  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-------  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++.......++....  ..+..+.. -+   +.+++++       
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFG   78 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999987  899999876422333443221  22222211 12   2334444       


Q ss_pred             CCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      +.|++|+.||......   .+   -...+..|+.    ..+.+.+.+++.. .+.||+++.-....            +.
T Consensus        79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~~  145 (255)
T 2q2v_A           79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIASVHGLV------------GS  145 (255)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS------------CC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcCchhcc------------CC
Confidence            8999999998753211   11   2334566666    6666666666543 46777776543221            22


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      |..-.++.+......+-+.++..++  +..|++.++-
T Consensus       146 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  180 (255)
T 2q2v_A          146 TGKAAYVAAKHGVVGLTKVVGLETA--TSNVTCNAIC  180 (255)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHTT--TSSEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhc--ccCcEEEEEe
Confidence            3223344444444456677777764  4455554443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.84  E-value=3.9e-05  Score=69.77  Aligned_cols=100  Identities=18%  Similarity=0.197  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h--H--------HHHHhcCCCCCeEEEEeCCCcHHh
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--V--------TADISHMDTNAVVRGFLGQQQLED  110 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g--~--------~~dl~~~~~~~~v~~~~~t~d~~~  110 (358)
                      ....+||+|||+ |.+|.+++..|+..|.  +|.++|++...  .  .        ..++....  ....    ..+.++
T Consensus        16 ~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~e   86 (245)
T 3dtt_A           16 YFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH--PHVH----LAAFAD   86 (245)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS--TTCE----EEEHHH
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc--Ccee----ccCHHH
Confidence            445689999998 9999999999999887  99999987522  0  0        22222111  1111    135678


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHH-HHHHHhhCCCeEEEEecCCCC
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTL-CEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i-~~~i~~~~p~a~viv~tNP~d  167 (358)
                      ++++||+||++....            .-.+.+.++ .+.    -++.+||.++||.+
T Consensus        87 ~~~~aDvVilavp~~------------~~~~~~~~i~~~~----l~g~ivi~~s~~~~  128 (245)
T 3dtt_A           87 VAAGAELVVNATEGA------------SSIAALTAAGAEN----LAGKILVDIANPLD  128 (245)
T ss_dssp             HHHHCSEEEECSCGG------------GHHHHHHHHCHHH----HTTSEEEECCCCEE
T ss_pred             HHhcCCEEEEccCcH------------HHHHHHHHhhhhh----cCCCEEEECCCCCC
Confidence            899999999985311            012333333 222    26788999999873

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.83  E-value=6e-05  Score=67.38  Aligned_cols=112  Identities=18%  Similarity=0.127  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~  121 (358)
                      ++++|.|+||+|++|++++..|+..  +.  +|++++++..  ...++... . ..+.. .....+++++++++|+||++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~--~~~~~~~~-~-~~~~~D~~d~~~~~~~~~~~d~vi~~   76 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQ--GKEKIGGE-A-DVFIGDITDADSINPAFQGIDALVIL   76 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHH--HHHHTTCC-T-TEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCC--chhhcCCC-e-eEEEecCCCHHHHHHHHcCCCEEEEe
Confidence            4579999999999999999999998  55  9999998641  11122111 0 11111 11113466778999999999


Q ss_pred             CCCCCC------------CCCC---HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          122 AGVPRK------------PGMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       122 ag~~~~------------~g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +|....            +...   -......|+.....+++.+.+.... .+|++|
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            885421            1100   1134677888889999999877543 455554

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.83  E-value=1.7e-05  Score=72.90  Aligned_cols=96  Identities=21%  Similarity=0.203  Sum_probs=70.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (358)
                      |||.|+||+|++|++++..|+..|.  +|+.+++..     .|+.+            ..++.++++  ++|+||++++.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d------------~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITN------------ISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            5899999999999999999998886  899998732     12211            123456666  79999999986


Q ss_pred             CCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       125 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ....  .....+.+..|+.....+++.+.+...  .+|++|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            5321  134566778899999999999988764  455554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.82  E-value=1.6e-05  Score=75.73  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC-----CCeEEE-EeCCCcHHhhhCCCCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-----NAVVRG-FLGQQQLEDALTGMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~-----~~~v~~-~~~t~d~~~al~~aDiV  118 (358)
                      +.|||+|||+ |.+|..++..|...|.  ++.++|+++   ....+.....     ...... +..++|+++ +.++|+|
T Consensus         2 ~~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V   74 (335)
T 3ghy_A            2 SLTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV   74 (335)
T ss_dssp             CCCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence            4689999998 9999999999999887  899999742   1122221110     000000 112356644 7999999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  167 (358)
                      |++.-                ...+.++++.+..+- |+..|+.++|.+.
T Consensus        75 ilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi~  108 (335)
T 3ghy_A           75 IVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGVP  108 (335)
T ss_dssp             EECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred             EEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            99852                123456666776654 6888888899953

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.82  E-value=1.7e-05  Score=73.26  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC--CCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~--aDiVIi~ag~  124 (358)
                      |||.|+||+|++|++++..|+ .|.  +|+.+|++.. ....|+.+            ..++.+++++  +|+||++++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~-~~~~D~~d------------~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK-EFCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS-SSCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc-cccccCCC------------HHHHHHHHHhcCCCEEEECccc
Confidence            689999999999999999998 776  9999987641 00011111            1235566776  9999999986


Q ss_pred             CCC--CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          125 PRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       125 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ...  ......+.+..|+.....+++.+.+...  .++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            431  1123456678899999999999987643  556554

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.82  E-value=6.9e-05  Score=74.76  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=71.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCC---------------CCCeEEEEeCCCcH
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMD---------------TNAVVRGFLGQQQL  108 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~---------------~~~~v~~~~~t~d~  108 (358)
                      +|||+|||+ |.||..++..|+..  +.  +++++|+++.+  +..+....               ....++.   ++|+
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~--~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~~~   76 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESR--INAWNSPTLPIYEPGLKEVVESCRGKNLFF---STNI   76 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHHhhcCCEEE---ECCH
Confidence            479999998 99999999999887  55  99999997521  12222110               0012332   4577


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCcc
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNST  169 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~  169 (358)
                      ++++++||+||++...|........+ -.-++..+.+.++.+.++. |+.+|++. |+|....
T Consensus        77 ~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~  138 (467)
T 2q3e_A           77 DDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAA  138 (467)
T ss_dssp             HHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHH
T ss_pred             HHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHH
Confidence            88899999999998766432211000 0123345566666666654 45555554 6777653

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.81  E-value=0.00019  Score=64.57  Aligned_cols=158  Identities=13%  Similarity=0.042  Sum_probs=87.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|++..  .....++...   ..+..+.. -+|   .+++++     
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999998752  2222233211   12222211 122   223333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        ..|+||+.+|.....   ..+   ....+..|+.    +.+.+.+.+++....+.|++++......            
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~------------  147 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV------------  147 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS------------
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhcc------------
Confidence              589999999865321   112   2334566766    4455555555443226777776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.|..-.++.+......+...++..+......+++.++
T Consensus       148 ~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v  185 (251)
T 1zk4_A          148 GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTV  185 (251)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEE
Confidence            22222334444333344555566655433455654444

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.81  E-value=8.7e-05  Score=70.22  Aligned_cols=67  Identities=21%  Similarity=0.302  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .+.|||+|||+ |.+|..++..|...|.  +|.++|++..  ...++....    +..   ++++++++++||+||++.
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~l~~~g----~~~---~~~~~e~~~~aDvVi~~v   95 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPA--RAASLAALG----ATI---HEQARAAARDADIVVSML   95 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CEE---ESSHHHHHTTCSEEEECC
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHCC----CEe---eCCHHHHHhcCCEEEEEC
Confidence            35689999998 9999999999999987  9999998752  222333221    222   256789999999999985

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.81  E-value=8e-05  Score=65.12  Aligned_cols=106  Identities=12%  Similarity=0.090  Sum_probs=71.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi~  121 (358)
                      .|||.|+||+|++|++++..|+..+...+|++++++...      .    ...+..+...    .++++++  +|+||++
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~----~~~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------E----HPRLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------C----CTTEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------c----CCCceEEeccccCHHHHHHhh--hcEEEEC
Confidence            469999999999999999999998865589999886532      0    0112221111    1222333  8999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +|..........+....|+.....+++.+.+.... .++++|.
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss  114 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSA  114 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECC
Confidence            98643222345566788999999999998876543 4555543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.81  E-value=9.1e-05  Score=65.75  Aligned_cols=76  Identities=26%  Similarity=0.371  Sum_probs=55.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      .|||+|||+ |.+|+.++..|...+.  ++.++|+++.                           ++++||+||++.. +
T Consensus        19 ~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-~   67 (209)
T 2raf_A           19 GMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-Y   67 (209)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-H
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-c
Confidence            579999998 9999999999998887  8999987532                           4679999999853 1


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                                     ..++++++.+..+.++.+++.++|+.+
T Consensus        68 ---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           68 ---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             ---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence                           123344444443333678888899765

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=97.80  E-value=3.6e-05  Score=72.12  Aligned_cols=167  Identities=16%  Similarity=0.118  Sum_probs=95.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhC--CCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALT--GMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~--~aDiVI  119 (358)
                      +|||.|+||+|++|++++..|+..|.  +|+.+|++..... ..+..     .+..+...    .++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            36999999999999999999999886  8999987641110 11111     11111111    23446677  899999


Q ss_pred             EcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHH
Q 018265          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (358)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~  197 (358)
                      ++++.....  .....+.+..|+.....+++.+.+.... .+|++|... +...--...+......++...+|.+.....
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~-~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e  150 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTAA-TYGEVDVDLITEETMTNPTNTYGETKLAIE  150 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGG-GGCSCSSSSBCTTSCCCCSSHHHHHHHHHH
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCce-eeCCCCCCCCCcCCCCCCCChHHHHHHHHH
Confidence            999864211  1234456778999999999998876533 455554321 100000000000001122344555555555


Q ss_pred             HHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          198 RANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       198 R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      ++...+++..|++..-++ ..++|..
T Consensus       151 ~~~~~~~~~~~~~~~ilrp~~v~G~~  176 (330)
T 2c20_A          151 KMLHWYSQASNLRYKIFRYFNVAGAT  176 (330)
T ss_dssp             HHHHHHHHTSSCEEEEEECSEEECCC
T ss_pred             HHHHHHHHHhCCcEEEEecCcccCCC
Confidence            666666666666555453 4677764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.79  E-value=7.9e-05  Score=70.50  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCcHHh-hhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLED-ALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~-al~~aDiVIi~a  122 (358)
                      .+||+|||+ |.+|..++..|...|...+|.++|++.. ...+.++   .. .. ..   ++|+++ ++++||+||++.
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~---G~-~~-~~---~~~~~~~~~~~aDvVilav  102 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---GI-ID-EG---TTSIAKVEDFSPDFVMLSS  102 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---TS-CS-EE---ESCTTGGGGGCCSEEEECS
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC---CC-cc-hh---cCCHHHHhhccCCEEEEeC
Confidence            379999998 9999999999999887668999998752 1112211   11 00 11   245667 899999999985

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.79  E-value=4.6e-05  Score=70.14  Aligned_cols=100  Identities=17%  Similarity=0.088  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEEEc
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIP  121 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  121 (358)
                      |||.|+||+|++|++++..|... +.  +|++++++....  .++...    .+..+.+    ..++.++++++|+||++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~----~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRG----KVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBT----TBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhC----CCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            68999999999999999998876 65  888888765211  112111    1222111    13466789999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++....        ...|+...+.+++.+++.+.. .++++|
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~-~iv~~S  105 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVA-HIIFIG  105 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            875421        134778888999999887644 444443

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.79  E-value=0.00011  Score=65.87  Aligned_cols=103  Identities=18%  Similarity=0.178  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHHHHhcCCCCCeEEEEeCCCcHHhhhC----CCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFLGQQQLEDALT----GMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~t~d~~~al~----~aDiVI  119 (358)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++....   ...|+.+.            .+++++++    +.|+||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRE------------TAVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccH------------HHHHHHHHHcCCCccEEE
Confidence            3799999999999999999999887  899999875210   11222211            12334443    899999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  164 (358)
                      ++||.... .......+..|+.....+++.+.+.   .....+|++|.
T Consensus        68 ~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           68 CCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             ECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             ECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            99987542 2234556677877777777766554   22356666654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.78  E-value=6.9e-05  Score=71.98  Aligned_cols=77  Identities=18%  Similarity=0.247  Sum_probs=50.5

Q ss_pred             CCCCCCCC-EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-HHHh-cCCC------CCeEEEEeCCCcHHh
Q 018265           40 AKGGSPGF-KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADIS-HMDT------NAVVRGFLGQQQLED  110 (358)
Q Consensus        40 ~~~~~~~~-KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~-~dl~-~~~~------~~~v~~~~~t~d~~~  110 (358)
                      +++++-+| ||+|||+ |.+|..++..|...|.  +|.++|+++..... .+.. ....      ...+..   ++|+.+
T Consensus         8 ~~~~~m~M~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~   81 (366)
T 1evy_A            8 AKDELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVEK   81 (366)
T ss_dssp             -CCCCCCEEEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHH
T ss_pred             hhhHhhccCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccccccccccceee---eCCHHH
Confidence            34444445 9999998 9999999999998876  89999987521111 1110 0000      112333   356778


Q ss_pred             hhCCCCEEEEcC
Q 018265          111 ALTGMDIVIIPA  122 (358)
Q Consensus       111 al~~aDiVIi~a  122 (358)
                      ++++||+||++.
T Consensus        82 ~~~~aDvVilav   93 (366)
T 1evy_A           82 AYNGAEIILFVI   93 (366)
T ss_dssp             HHTTCSSEEECC
T ss_pred             HHcCCCEEEECC
Confidence            899999999985

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.78  E-value=8.6e-05  Score=66.89  Aligned_cols=157  Identities=15%  Similarity=0.135  Sum_probs=89.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .+++++     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999987  899999875  222223343221  22222211 122   333343     


Q ss_pred             --CCCEEEEcCCCCCCC--CCC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 --GMDIVIIPAGVPRKP--GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                        +.|+||++||.....  ..+   ....+..|+.....+.+.+    ++. ..+.|+++|.....            .+
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~------------~~  152 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTITSMAAE------------NK  152 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------CC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhc------------CC
Confidence              899999999864321  122   2334566766655555444    333 34667776643311            12


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .++...++.+......+...+++.++  +..+++.++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~v~  188 (255)
T 1fmc_A          153 NINMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGIA  188 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence            23333455554444556667777663  3445555554

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=97.78  E-value=1.4e-05  Score=74.12  Aligned_cols=167  Identities=13%  Similarity=0.084  Sum_probs=96.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhC--CCCEEEEc
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVIIP  121 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi~  121 (358)
                      |||.|+||+|++|++++..|+..  +.  +|+++|++.......  ...   ..+.. .....+++++++  ++|+||++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~--~~~---~~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDVV--NSG---PFEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHHH--HSS---CEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccccc--CCC---ceEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            68999999999999999999887  55  889999865221111  111   11111 001123456677  89999999


Q ss_pred             CCCCCCC-CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHH
Q 018265          122 AGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (358)
Q Consensus       122 ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~  200 (358)
                      |+..... .....+.+..|+.....+++.+.+.... .+|++|...-.-..--...........+...+|.+.....++.
T Consensus        76 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~  154 (312)
T 2yy7_A           76 AALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWC  154 (312)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHHHHHHHH
T ss_pred             CccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHHHHHHHH
Confidence            9864211 1234556788999999999999876433 4555443210000000000000001123345666666666666


Q ss_pred             HHHHHHhCCCCCCCc-eEEEEe
Q 018265          201 TFVAEVLGLDPREVD-VPVVGG  221 (358)
Q Consensus       201 ~~lA~~l~v~~~~v~-~~v~G~  221 (358)
                      ..+++..|++..-++ ..++|.
T Consensus       155 ~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          155 EYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHhcCCcEEEEeCCeEecC
Confidence            677777787766665 567884

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.77  E-value=0.00039  Score=62.74  Aligned_cols=152  Identities=14%  Similarity=0.162  Sum_probs=87.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  112 (358)
                      ..+|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .++++       
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999876  222333343221  23332211 122   22233       


Q ss_pred             CCCCEEEEcCCCCC--C----CCCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          113 TGMDIVIIPAGVPR--K----PGMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       113 ~~aDiVIi~ag~~~--~----~g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      ...|++|+.||...  .    ...+   -...+..|+..    .+.+.+.+.+.. .+.|++++.....           
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~-----------  152 (253)
T 3qiv_A           85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAAW-----------  152 (253)
T ss_dssp             SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC---------------
T ss_pred             CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCcccc-----------
Confidence            38999999998731  1    0112   23345667665    666666666543 5677777654321           


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                          +....++.+......+.+.++..++  +..|++..+
T Consensus       153 ----~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  186 (253)
T 3qiv_A          153 ----LYSNYYGLAKVGINGLTQQLSRELG--GRNIRINAI  186 (253)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             ----CCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence                2234577776666667888888874  344544433

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.77  E-value=0.00046  Score=64.33  Aligned_cols=160  Identities=20%  Similarity=0.211  Sum_probs=91.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hh------
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---ED------  110 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~------  110 (358)
                      ..+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|.   ++      
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~  114 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVV  114 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHH
Confidence            34556899999999999999999999997  999999876  233344454322 123333211 1232   12      


Q ss_pred             -hhCCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          111 -ALTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       111 -al~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                       .+...|++|+.||.....   ..+.   ...+..|+.....+++.    +++.. .+.||+++.-....          
T Consensus       115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS~~~~~----------  183 (293)
T 3rih_A          115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSSITGPV----------  183 (293)
T ss_dssp             HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECCSBTTT----------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeChhhcc----------
Confidence             234679999999864321   1222   23455666555444444    44443 45667666543221          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       .+.|..-.|+.+......+-+.+|..++  +..|++.++
T Consensus       184 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  220 (293)
T 3rih_A          184 -TGYPGWSHYGASKAAQLGFMRTAAIELA--PRGVTVNAI  220 (293)
T ss_dssp             -BBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -CCCCCCHHHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence             1233333445544444556777787764  334544433

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.76  E-value=0.00012  Score=65.76  Aligned_cols=159  Identities=15%  Similarity=0.171  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~----  113 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +++++| .+..  .....++....  ..+..+.. -+|   .+++++    
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987  889884 4432  22223333221  22322211 122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCC------CCCHHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 ---GMDIVIIPAGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                         +.|+||+.+|.....      ...-...+..|+.....+.+.+..+   ...+.||+++......            
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------  147 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGII------------  147 (247)
T ss_dssp             HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-----------------
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc------------
Confidence               799999999864311      1122345566766644444444332   1346777776653221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      +.|....++.+......+-..+++.++  +..+++.++..
T Consensus       148 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~P  185 (247)
T 2hq1_A          148 GNAGQANYAASKAGLIGFTKSIAKEFA--AKGIYCNAVAP  185 (247)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CCCCCcHhHHHHHHHHHHHHHHHHHHH--HcCcEEEEEEE
Confidence            122223344444444456667777764  33455555553

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.76  E-value=0.0001  Score=71.23  Aligned_cols=100  Identities=11%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEeCCCc-----hhHHHHHhcC--CC------CCeEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHM--DT------NAVVRGFLGQQ  106 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~-------~~~el~L~D~~~~-----~g~~~dl~~~--~~------~~~v~~~~~t~  106 (358)
                      |||+|||+ |.+|+.++..|+..|       .  +|.++|+++.     ....+.-.+.  ..      ...+..   ++
T Consensus        22 ~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~~   95 (375)
T 1yj8_A           22 LKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---HS   95 (375)
T ss_dssp             BCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---ES
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---EC
Confidence            68999998 999999999998876       4  8999998753     2222211110  00      112333   35


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHh----hC-CCeEEEEecCCCCc
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK----CC-PKAIVNLISNPVNS  168 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~----~~-p~a~viv~tNP~d~  168 (358)
                      |+++++++||+||++..                ...+.++++.+..    +. |+.+++..+|.++.
T Consensus        96 ~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           96 DLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             STHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             CHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            67788999999999842                1346667777776    54 57788888876543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.76  E-value=6.1e-05  Score=71.33  Aligned_cols=103  Identities=15%  Similarity=0.155  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      ..+++|||+|||+ |.+|..++..|...|..  .+|.++|++........+...  .  ++.   +++..+++++||+||
T Consensus        18 ~~~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~--G--~~~---~~~~~e~~~~aDvVi   89 (322)
T 2izz_A           18 LYFQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKM--G--VKL---TPHNKETVQHSDVLF   89 (322)
T ss_dssp             ----CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHH--T--CEE---ESCHHHHHHHCSEEE
T ss_pred             hccCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHc--C--CEE---eCChHHHhccCCEEE
Confidence            3456689999998 99999999999988731  389999987521122223211  1  222   235678889999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                      ++.. +               ..+.++++.+..+. |+.+|+.++|.+..
T Consensus        90 lav~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~~  123 (322)
T 2izz_A           90 LAVK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVTI  123 (322)
T ss_dssp             ECSC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCCH
T ss_pred             EEeC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCCH
Confidence            9852 1               12344555565544 67788878887763

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.75  E-value=5.9e-05  Score=69.99  Aligned_cols=65  Identities=8%  Similarity=0.141  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +|||+|||+ |.+|..++..|...|.  +|+++|+++....  .+.+..    +..   ++++++++++||+||++.
T Consensus         1 s~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            1 SQKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAE--ELAALG----AER---AATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHhcCCEEEEEc
Confidence            379999998 9999999999999987  9999999762211  122211    122   357789999999999985

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.74  E-value=0.00015  Score=66.28  Aligned_cols=118  Identities=17%  Similarity=0.175  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC---
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT---  113 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~---  113 (358)
                      ..+.++|.|+||+|.+|++++..|+..|.  +|+++|++..  .....++...   ..+..+.. -+|   ++++++   
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~   87 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTI   87 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHH
Confidence            34556899999999999999999999987  8999998652  2222233211   12222211 122   333333   


Q ss_pred             ----CCCEEEEcCCCCCCC-----CCC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 018265          114 ----GMDIVIIPAGVPRKP-----GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (358)
Q Consensus       114 ----~aDiVIi~ag~~~~~-----g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  165 (358)
                          +.|+||+.+|.....     ..+   -.+.+..|+.....+++.+..+   ...+.||+++..
T Consensus        88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  154 (278)
T 2bgk_A           88 AKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASI  154 (278)
T ss_dssp             HHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCG
T ss_pred             HHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeec
Confidence                799999999864321     111   2334566766555555555443   235677777654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.74  E-value=0.00019  Score=64.84  Aligned_cols=147  Identities=15%  Similarity=0.142  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .+++++     
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQ   87 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  222223343221  22332211 122   233333     


Q ss_pred             --CCCEEEEcCCCCC-C-C--CCC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPR-K-P--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~-~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        +.|+||+.||... . +  ..+   -...+..|+.....+++.+..+   ...+.+++++......            
T Consensus        88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------  155 (260)
T 3awd_A           88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLI------------  155 (260)
T ss_dssp             HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcc------------
Confidence              7899999998653 1 1  122   1334566665555555544332   2356677766533221            


Q ss_pred             CCCCC--cEEEeeeccHHHHHHHHHHHh
Q 018265          182 TYDPK--RLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       182 ~~p~~--kviG~t~lds~R~~~~lA~~l  207 (358)
                      +.|..  ..++.+......+...+++.+
T Consensus       156 ~~~~~~~~~Y~~sK~a~~~~~~~l~~e~  183 (260)
T 3awd_A          156 VNRPQQQAAYNASKAGVHQYIRSLAAEW  183 (260)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence            11221  234444444445666667665

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.74  E-value=0.00032  Score=65.15  Aligned_cols=163  Identities=12%  Similarity=0.102  Sum_probs=96.1

Q ss_pred             CCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHH-HhcCCCCCeEEEEeC-CCc---HHhh
Q 018265           39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD-ISHMDTNAVVRGFLG-QQQ---LEDA  111 (358)
Q Consensus        39 ~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~d-l~~~~~~~~v~~~~~-t~d---~~~a  111 (358)
                      ......+.++|.|+||+|.+|.+++..|+..|.  +|++.|++..  .....+ +...  ...+..+.. -+|   .+++
T Consensus        40 ~~~~~l~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~  115 (291)
T 3ijr_A           40 KGSEKLKGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE--GVKCVLLPGDLSDEQHCKDI  115 (291)
T ss_dssp             CCCSTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT--TCCEEEEESCTTSHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHH
Confidence            333445667999999999999999999999997  8999998762  112222 2222  123332211 122   2222


Q ss_pred             h-------CCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHH
Q 018265          112 L-------TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       112 l-------~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~  176 (358)
                      +       ...|++|+.||.....+    .+   -...+..|+.....+++.+..+- ..+.||+++.-...        
T Consensus       116 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~--------  187 (291)
T 3ijr_A          116 VQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAY--------  187 (291)
T ss_dssp             HHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHH--------
T ss_pred             HHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhc--------
Confidence            3       37899999998643211    12   23456778888888888777653 34577776543211        


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                          .+.+..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       188 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  224 (291)
T 3ijr_A          188 ----EGNETLIDYSATKGAIVAFTRSLSQSLV--QKGIRVNGV  224 (291)
T ss_dssp             ----HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             ----CCCCCChhHHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence                1233333455554444566777787774  334544443

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.73  E-value=0.00013  Score=66.86  Aligned_cols=159  Identities=15%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEe----CC----CcHHhhh
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTNAVVRGFL----GQ----QQLEDAL  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~----~t----~d~~~al  112 (358)
                      ++.++|.|+||+|.+|.+++..|+..|.  +|+++|+ +.  ......++.... ...+..+.    ..    .+.++++
T Consensus         9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~   85 (276)
T 1mxh_A            9 SECPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDII   85 (276)
T ss_dssp             --CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHH
Confidence            4456899999999999999999999987  8999998 54  222223332210 11222211    11    1222333


Q ss_pred             C-------CCCEEEEcCCCCCCCC-----------------CCHHhHHHHHHHHHHHHHHHHHhhC--CC------eEEE
Q 018265          113 T-------GMDIVIIPAGVPRKPG-----------------MTRDDLFNINAGIVKTLCEGIAKCC--PK------AIVN  160 (358)
Q Consensus       113 ~-------~aDiVIi~ag~~~~~g-----------------~~r~~~~~~N~~i~~~i~~~i~~~~--p~------a~vi  160 (358)
                      +       ..|++|+.||......                 ..-...+..|+.....+++.+..+-  ..      +.||
T Consensus        86 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv  165 (276)
T 1mxh_A           86 DCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVV  165 (276)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEE
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEE
Confidence            2       7899999998643211                 1122346667766666666665532  22      6777


Q ss_pred             EecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       161 v~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +++......            +.|..-.|+.+......+-+.++..++  +..|++.++
T Consensus       166 ~isS~~~~~------------~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~v~~v  210 (276)
T 1mxh_A          166 NLCDAMTDL------------PLPGFCVYTMAKHALGGLTRAAALELA--PRHIRVNAV  210 (276)
T ss_dssp             EECCGGGGS------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             EECchhhcC------------CCCCCeehHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            776543221            233333444444444556677777763  334544433

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.73  E-value=0.00014  Score=68.67  Aligned_cols=120  Identities=13%  Similarity=0.115  Sum_probs=72.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHH----HhcCCCCCeEEE--EeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----ISHMDTNAVVRG--FLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~d----l~~~~~~~~v~~--~~~t~d~~~al~~aDiVIi  120 (358)
                      |||+|||+ |.+|..++..|...|.  +|.++|++.. ....+    +... .......  ...++|.+++.+++|+||+
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~-~~i~~~Gl~~~~~-~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDY-ETVKAKGIRIRSA-TLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTH-HHHHHHCEEEEET-TTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChH-HHHHhCCcEEeec-CCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            79999998 9999999999999887  9999998752 11111    1110 1111111  1112466565569999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eec
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TML  194 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~l  194 (358)
                      +.-..    .            +.++++.+..+- |+..|+.+.|-++..-.     +.+.  +|..+|++- +..
T Consensus        78 avK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~-----l~~~--~~~~~vl~g~~~~  130 (320)
T 3i83_A           78 CIKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEPE-----VAAA--FPDNEVISGLAFI  130 (320)
T ss_dssp             CCCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSHH-----HHHH--STTSCEEEEEEEE
T ss_pred             ecCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHHH-----HHHH--CCCCcEEEEEEEe
Confidence            85322    1            112234444443 67888888999876532     2333  556677644 543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.72  E-value=0.0002  Score=66.08  Aligned_cols=95  Identities=14%  Similarity=0.204  Sum_probs=59.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC-CCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~ag~~  125 (358)
                      +||+|||+ |.+|..++..|...|...+|+++|++....  ..+.......  ..   ++|++++++ +||+||++... 
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~~aDvVilavp~-   72 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESI--SKAVDLGIID--EG---TTSIAKVEDFSPDFVMLSSPV-   72 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGGGGTCCSEEEECSCH-
T ss_pred             cEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHH--HHHHHCCCcc--cc---cCCHHHHhcCCCCEEEEcCCH-
Confidence            59999998 999999999999887544899999875211  1122111111  11   245678889 99999998521 


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNP  165 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP  165 (358)
                                 .    ...++++.+..+ .|+++|+.++|.
T Consensus        73 -----------~----~~~~v~~~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           73 -----------R----TFREIAKKLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             -----------H----HHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             -----------H----HHHHHHHHHHhhCCCCcEEEECCCC
Confidence                       1    122344444443 367777766653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.72  E-value=0.00015  Score=67.81  Aligned_cols=90  Identities=19%  Similarity=0.303  Sum_probs=60.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      +|||+|||+ |.+|..++..|+..|+  +|.++|+++....  .+.+..    +..   +++++++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEAG----ATL---ADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHTT----CEE---CSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CEE---cCCHHHHHh-CCEEEEECCCh
Confidence            469999998 9999999999999887  8999999862211  122111    222   357888888 99999985321


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  163 (358)
                                     ..++++++.+.... |+.+|+..|
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~s  105 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHS  105 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECS
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeC
Confidence                           22344445665554 566666554

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=97.71  E-value=3e-05  Score=70.76  Aligned_cols=103  Identities=21%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~a  122 (358)
                      +||.|+||+|++|++++..|+..|.  +|+++|++.....    .     ..+..+..    ..++.++++++|+||+++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~----~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAA----E-----AHEEIVACDLADAQAVHDLVKDCDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCC----C-----TTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCcccc----C-----CCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999998875  8999998652110    0     01111111    123567789999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +..  ........+..|+.....+++.+.+... ..++++|
T Consensus        72 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~iv~~S  109 (267)
T 3ay3_A           72 GVS--VERPWNDILQANIIGAYNLYEAARNLGK-PRIVFAS  109 (267)
T ss_dssp             SCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             cCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCC-CEEEEeC
Confidence            865  2233456678899999999999887643 3455554

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=97.70  E-value=0.00017  Score=68.28  Aligned_cols=97  Identities=14%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCC---
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTG---  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~-----~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~---  114 (358)
                      |||.|+||+|++|++++..|+..+     .  +|+.+|++.....   +.    ...+..+.+.    .++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~----~~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HE----DNPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CC----SSCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---cc----cCceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999998877     5  8999998752111   11    1122222111    235567888   


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP  155 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p  155 (358)
                      +|+||++|+...   ....+....|+.....+++.+.+.++
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            999999998652   34566778899999999999998743

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.70  E-value=2e-05  Score=72.53  Aligned_cols=106  Identities=10%  Similarity=0.074  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCC-CCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTG-MDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~-aDiVIi~  121 (358)
                      |++|||.|+|+ |++|++++..|+..|.  +|+.++++...     +.. . ...+.. .....++.+++++ +|+||++
T Consensus         1 M~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~-~-~~~~~~Dl~d~~~~~~~~~~~~d~vih~   70 (286)
T 3gpi_A            1 MSLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MPA-G-VQTLIADVTRPDTLASIVHLRPEILVYC   70 (286)
T ss_dssp             -CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CCT-T-CCEEECCTTCGGGCTTGGGGCCSEEEEC
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----ccc-C-CceEEccCCChHHHHHhhcCCCCEEEEe
Confidence            35679999996 9999999999999887  89999886521     000 0 011111 0011234456777 9999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++...   .........|+.....+++.+.+.... .+|++|
T Consensus        71 a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~S  108 (286)
T 3gpi_A           71 VAASE---YSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVS  108 (286)
T ss_dssp             HHHHH---HC-----CCSHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred             CCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEc
Confidence            87431   122334566889999999999875433 455444

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.69  E-value=0.00052  Score=63.20  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=89.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  112 (358)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....   .+..+.. -+|   .++++     
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  101 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALGE  101 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  899999875  222233343211   2222111 122   22223     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHH----HHHHHHHHhhCC---CeEEEEecCCCCccHHHHHHHH
Q 018265          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCP---KAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p---~a~viv~tNP~d~~t~~~~~~~  177 (358)
                        ...|++|+.||.....   ..+   -...+..|+...    +.+.+.+++...   .+.||+++.-....        
T Consensus       102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~--------  173 (276)
T 2b4q_A          102 LSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGIS--------  173 (276)
T ss_dssp             HCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTC--------
T ss_pred             hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcC--------
Confidence              3789999999864321   111   233455565444    555555555432   16777776533221        


Q ss_pred             HHhCCCCCCc-EEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          178 KKVGTYDPKR-LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       178 ~~~~~~p~~k-viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                          +.|..- .++.+......+-+.++..++  +..|++.++.
T Consensus       174 ----~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gI~vn~v~  211 (276)
T 2b4q_A          174 ----AMGEQAYAYGPSKAALHQLSRMLAKELV--GEHINVNVIA  211 (276)
T ss_dssp             ----CCCCSCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ----CCCCCccccHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence                222222 445554444556677777763  3455554444

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.68  E-value=0.00011  Score=69.35  Aligned_cols=113  Identities=19%  Similarity=0.097  Sum_probs=72.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--------hhHHHHHhcCCCCCeEEEEeCC----CcHHhhhC-
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------PGVTADISHMDTNAVVRGFLGQ----QQLEDALT-  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--------~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~-  113 (358)
                      |||.|+||+|++|++++..|+..|.  +|+++|++..        .....++.... ...+..+...    .++.++++ 
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHh
Confidence            6899999999999999999999886  8899986431        11122222100 0112221111    23445666 


Q ss_pred             -CCCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          114 -GMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                       ++|+||++|+.....  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence             899999999864211  1223456788999999999998876543 455544

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.68  E-value=0.00014  Score=65.05  Aligned_cols=149  Identities=17%  Similarity=0.099  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC--CCcHHhhhC---CCCEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--QQQLEDALT---GMDIV  118 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t~d~~~al~---~aDiV  118 (358)
                      ++.++|.|+||+|++|++++..|+..|.  +|+++|++....... ..+.. ...+.....  ..+.+++++   ..|+|
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~id~v   80 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSL-AKECP-GIEPVCVDLGDWDATEKALGGIGPVDLL   80 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHH-HHHST-TCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHhcc-CCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence            4456999999999999999999999987  899999875211111 01111 111111110  122334444   47999


Q ss_pred             EEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          119 IIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       119 Ii~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      |++||.....   ..+   -...+..|+.....+.+.+    .+....+.||++|......            +.|....
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~~~~~  148 (244)
T 1cyd_A           81 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------TFPNLIT  148 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBHH
T ss_pred             EECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcC------------CCCCcch
Confidence            9999865321   111   2234556666644444444    3333356777776543211            2333334


Q ss_pred             EEeeeccHHHHHHHHHHHhC
Q 018265          189 LGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~  208 (358)
                      ++.+......+-+.+++.++
T Consensus       149 Y~~sK~a~~~~~~~~a~~~~  168 (244)
T 1cyd_A          149 YSSTKGAMTMLTKAMAMELG  168 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG
T ss_pred             hHHHHHHHHHHHHHHHHHhh
Confidence            55554444556677777764

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=97.68  E-value=0.0001  Score=67.95  Aligned_cols=161  Identities=14%  Similarity=0.038  Sum_probs=92.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC--CCEEEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVII  120 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~--aDiVIi  120 (358)
                      ++++|||.|+||+|++|++++..|+..+..........   .....|+.+            ..++.+++++  +|+||+
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~---~~~~~D~~d------------~~~~~~~~~~~~~d~Vih   67 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFV---SSKDADLTD------------TAQTRALFEKVQPTHVIH   67 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEEC---CTTTCCTTS------------HHHHHHHHHHSCCSEEEE
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCCccccccccc---CceecccCC------------HHHHHHHHhhcCCCEEEE
Confidence            35678999999999999999999998875100000000   000111111            1234566766  999999


Q ss_pred             cCCCCCC---CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC-C------ccHHHHHHHHHHhCCCCCCc-EE
Q 018265          121 PAGVPRK---PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-N------STVPIAAEVFKKVGTYDPKR-LL  189 (358)
Q Consensus       121 ~ag~~~~---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-d------~~t~~~~~~~~~~~~~p~~k-vi  189 (358)
                      +|+....   ......+.+..|+.....+++.+.+...+ .+|++|.-. .      .++    +-........+.. .+
T Consensus        68 ~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~----E~~~~~~~~~p~~~~Y  142 (319)
T 4b8w_A           68 LAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPID----ETMIHNGPPHNSNFGY  142 (319)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSBC----GGGGGBSCCCSSSHHH
T ss_pred             CceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCcc----ccccccCCCCCCcchH
Confidence            9986421   11334567889999999999999887644 445443211 0      110    0000000111122 35


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      |.+.....++...+++..|++..-++ ..++|...
T Consensus       143 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~  177 (319)
T 4b8w_A          143 SYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHD  177 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCC
Confidence            66666666666677777787665554 46788543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.68  E-value=7.9e-05  Score=68.18  Aligned_cols=94  Identities=13%  Similarity=0.208  Sum_probs=62.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~e-l~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      +|||+|||+ |.+|..++..|...+.  + +.++|++...  ...+....   .+..   +++++++++++|+||++...
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~--~~~~~~~~---g~~~---~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEES--ARELAQKV---EAEY---TTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHH--HHHHHHHT---TCEE---ESCGGGSCSCCSEEEECCCH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHH--HHHHHHHc---CCce---eCCHHHHhcCCCEEEEecCH
Confidence            479999998 9999999999988776  5 8899986521  11222110   1222   24667888999999998521


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  166 (358)
                                      ..+.++++.+..+. |+.+|+..++-.
T Consensus        79 ----------------~~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           79 ----------------SAFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             ----------------HHHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             ----------------HHHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                            11356666676655 677777776543

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.67  E-value=0.00014  Score=68.29  Aligned_cols=113  Identities=19%  Similarity=0.157  Sum_probs=70.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC-C---cHHhhhC--CCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-Q---QLEDALT--GMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~al~--~aDiV  118 (358)
                      |||.|+||+|++|++++..|+..|.  +|+++|...  ......++.... ...+..+... +   ++.++++  +.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            6899999999999999999999887  899998643  111112222100 0111111111 2   2344554  59999


Q ss_pred             EEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      |++||.....  .....+.+..|+.....+++.+++.... .+|++|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            9999864211  0123456788999999999988876543 455543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.67  E-value=7.9e-05  Score=67.90  Aligned_cols=155  Identities=15%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCC---cHHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQ---QLEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~-----  113 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++..     .+..+. .-+   +.+++++     
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   79 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEH   79 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  899999875  2222233321     111111 112   2233343     


Q ss_pred             --CCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        +.|++|+.||......   .+   -...+..|+.    +.+...+.+.+..+.+.||+++......            
T Consensus        80 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------  147 (259)
T 4e6p_A           80 AGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR------------  147 (259)
T ss_dssp             SSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc------------
Confidence              8999999999753211   11   2233455654    4444555555554467888876543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|..-.++.+......+-+.++..++  +..|++.++.
T Consensus       148 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v~  184 (259)
T 4e6p_A          148 GEALVAIYCATKAAVISLTQSAGLDLI--KHRINVNAIA  184 (259)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhh--hcCCEEEEEE
Confidence            233333445544444556777777774  3445444433

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.67  E-value=0.00013  Score=67.18  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=89.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-------C
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-------G  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-------~  114 (358)
                      .++|.|+||+|++|++++..|+..|.  +|++.|++....... .....  ..+..+.. -+|   .+++++       +
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDL-VAAYP--DRAEAISLDVTDGERIDVVAADVLARYGR   79 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHH-HHHCT--TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHhcc--CCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            35899999999999999999999987  899999876221111 01111  12222111 122   223333       7


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       115 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      .|+||++||.....   ..+   -...+..|+..    .+.+.+.+++.. .+.||++|......            +.+
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~------------~~~  146 (281)
T 3m1a_A           80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSFGGQL------------SFA  146 (281)
T ss_dssp             CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC------------CCT
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCccccC------------CCC
Confidence            89999999864211   122   22345667666    677777766654 46677766533221            344


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.-.++.+......+-+.++..++  +..+++.++
T Consensus       147 ~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  179 (281)
T 3m1a_A          147 GFSAYSATKAALEQLSEGLADEVA--PFGIKVLIV  179 (281)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhh--ccCcEEEEE
Confidence            444555555445566777777753  334444333

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.67  E-value=4.2e-05  Score=66.62  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC---CCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT---GMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~---~aDiVIi~a  122 (358)
                      +|||.|+||+|++|++++..|+ .|.  +|+++|++.. ....|+.+            ..+.+++++   ..|+||+++
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~------------~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITN------------IDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTC------------HHHHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCC------------HHHHHHHHHHhCCCCEEEECC
Confidence            4799999999999999999999 876  8999998642 00111111            112233343   489999999


Q ss_pred             CCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecC
Q 018265          123 GVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISN  164 (358)
Q Consensus       123 g~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tN  164 (358)
                      |......   .+   -...+..|+.....+++.+.++-. .+.+++++.
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            8643211   12   223456788777788777766532 256666654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.66  E-value=7e-05  Score=68.63  Aligned_cols=103  Identities=14%  Similarity=0.168  Sum_probs=67.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||.|+||+|++|++++..|+..  +.  +|+.++++.....  ++..... ..+.. +....++.++++++|+||++++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~~-~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQGV-EVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTTC-EEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcCC-eEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            47999999999999999999887  65  8899998652211  1221110 11111 0011345678899999999988


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ..  .+  .    ..|+.....+++.+++.... .++++|
T Consensus        76 ~~--~~--~----~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           76 PH--YD--N----TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             CC--SC--H----HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CC--cC--c----hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            53  11  1    45788888999988876543 455544

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.66  E-value=0.00052  Score=62.44  Aligned_cols=160  Identities=11%  Similarity=0.056  Sum_probs=93.6

Q ss_pred             CCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe----CCCcHHhhh-----
Q 018265           45 PGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL----GQQQLEDAL-----  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al-----  112 (358)
                      +.+++.|+||+|+  +|.+++..|+..|.  +|+++|++. ......++........+..+.    ...+.++++     
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            3458999999988  99999999999987  899999875 222333333221111222211    112233333     


Q ss_pred             --CCCCEEEEcCCCCCC-----C--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHH
Q 018265          113 --TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                        ...|++|+.+|....     +  ..+   -...+..|+.....+.+.+..+- +.+.||+++......          
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----------  153 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL----------  153 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS----------
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc----------
Confidence              368999999987531     1  112   23345677777777777776654 357778776543221          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                        +.|..-.++.+......+-+.++..++  +..|++..+-
T Consensus       154 --~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v~  190 (266)
T 3oig_A          154 --VMPNYNVMGVAKASLDASVKYLAADLG--KENIRVNSIS  190 (266)
T ss_dssp             --CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             --cCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence              233333455554444556777777774  3445544443

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.65  E-value=0.00031  Score=65.57  Aligned_cols=148  Identities=18%  Similarity=0.143  Sum_probs=85.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~----  113 (358)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++....  ..+..+.. -+|   .+++++    
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  104 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFR  104 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999997  899999876  223333444321  22222211 122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 ---GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                         ..|++|+.||......   .+   -...+..|+.    +++.+.+.+.+....+.|+++|.-....           
T Consensus       105 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-----------  173 (301)
T 3tjr_A          105 LLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV-----------  173 (301)
T ss_dssp             HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-----------
T ss_pred             hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-----------
Confidence               7899999999753211   11   2234455554    4444555555555467788776544222           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHh
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l  207 (358)
                       +.|..-.|+.+......+-..++..+
T Consensus       174 -~~~~~~~Y~asKaa~~~~~~~la~e~  199 (301)
T 3tjr_A          174 -PNAGLGTYGVAKYGVVGLAETLAREV  199 (301)
T ss_dssp             -CCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHh
Confidence             22322334444333344556666665

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.65  E-value=0.00013  Score=65.75  Aligned_cols=157  Identities=14%  Similarity=0.130  Sum_probs=87.2

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh---
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL---  112 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al---  112 (358)
                      ...+..+|.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++..     .+.... .-+|   .++.+   
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~   82 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKT   82 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTC
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhc
Confidence            344567999999999999999999999987  8999998752  222222321     111111 1122   22333   


Q ss_pred             CCCCEEEEcCCCCCCC------CCCHHhHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKP------GMTRDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~------g~~r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      .+.|++|+.||.....      ..+-...+..|+.....+    .+.+.+. ..+.||+++......            +
T Consensus        83 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~  149 (249)
T 3f9i_A           83 SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIVGIA------------G  149 (249)
T ss_dssp             SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC--------------C
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHHhcc------------C
Confidence            3789999999864311      122334455665544444    4444433 456778777654322            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.++.+......+-+.++..++  +..|++.++.
T Consensus       150 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  185 (249)
T 3f9i_A          150 NPGQANYCASKAGLIGMTKSLSYEVA--TRGITVNAVA  185 (249)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEEe
Confidence            33334455554444556677777763  3445544443

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.65  E-value=0.00034  Score=63.50  Aligned_cols=158  Identities=16%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~----  113 (358)
                      .+.++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .+++++    
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   87 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVN   87 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  899999875  222223343221  12222211 122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCC----CCC---HHhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          114 ---GMDIVIIPAGVPRKP----GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                         +.|++|+.||.....    ..+   -...+..|+.....    +.+.+++. ..+.||+++.-....          
T Consensus        88 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~----------  156 (260)
T 2zat_A           88 LHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSSVGAYH----------  156 (260)
T ss_dssp             HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTS----------
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEechhhcC----------
Confidence               899999999864211    111   22345556555544    44444443 346677766433211          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                        +.|..-.++.+......+-+.++..++  +..|++.++.
T Consensus       157 --~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  193 (260)
T 2zat_A          157 --PFPNLGPYNVSKTALLGLTKNLAVELA--PRNIRVNCLA  193 (260)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             --CCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence              233333344444444556677777763  3455555554

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.64  E-value=0.00024  Score=63.47  Aligned_cols=77  Identities=19%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (358)
                      +.++|.|+||+|.+|++++..|+..|  .  +|+++|++.....  ++.+. ....+..+.. -+|   .+++++     
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~--~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKAT--ELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCH--HHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHH--HHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHh
Confidence            34689999999999999999999988  6  9999998752211  12221 1122332211 122   333344     


Q ss_pred             ----CCCEEEEcCCCCC
Q 018265          114 ----GMDIVIIPAGVPR  126 (358)
Q Consensus       114 ----~aDiVIi~ag~~~  126 (358)
                          +.|+||++||...
T Consensus        77 ~g~~~id~li~~Ag~~~   93 (250)
T 1yo6_A           77 VGSDGLSLLINNAGVLL   93 (250)
T ss_dssp             HGGGCCCEEEECCCCCC
T ss_pred             cCCCCCcEEEECCcccC
Confidence                8999999998754

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.64  E-value=0.00014  Score=65.82  Aligned_cols=160  Identities=16%  Similarity=0.137  Sum_probs=85.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCC-----CCCeEEEEeC-CCc---HHhhh
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMD-----TNAVVRGFLG-QQQ---LEDAL  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~-----~~~~v~~~~~-t~d---~~~al  112 (358)
                      ++.++|.|+||+|.+|.+++..|+..|.  +|+++|++...  ....++....     ....+..+.. -+|   .++++
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   82 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL   82 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence            3446899999999999999999999987  89999987521  1111121110     0012222211 122   33334


Q ss_pred             CCC--------CEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHh----hCCCeEEEEecCCCCccHHHHH
Q 018265          113 TGM--------DIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISNPVNSTVPIAA  174 (358)
Q Consensus       113 ~~a--------DiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNP~d~~t~~~~  174 (358)
                      +++        |+||+.||.....   ..+   ....+..|+.....+.+.+..    ....+.||++|.....      
T Consensus        83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~------  156 (264)
T 2pd6_A           83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGK------  156 (264)
T ss_dssp             HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH------
T ss_pred             HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhc------
Confidence            433        9999999875321   111   233455666555555554443    3324677777653211      


Q ss_pred             HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       175 ~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                           . +.|..-.++.+......+...+++.++  +..+++.++
T Consensus       157 -----~-~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  193 (264)
T 2pd6_A          157 -----V-GNVGQTNYAASKAGVIGLTQTAARELG--RHGIRCNSV  193 (264)
T ss_dssp             -----H-CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -----c-CCCCChhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence                 1 234444455554444456666776653  234444433

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.64  E-value=0.00045  Score=63.94  Aligned_cols=92  Identities=18%  Similarity=0.288  Sum_probs=62.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||+|||++|.+|..++..|...|.  +|+++|++...  ...+....    +..    .+..+++++||+||++...  
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~g----~~~----~~~~~~~~~aDvVi~av~~--   77 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGMG----IPL----TDGDGWIDEADVVVLALPD--   77 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHTT----CCC----CCSSGGGGTCSEEEECSCH--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcC----CCc----CCHHHHhcCCCEEEEcCCc--
Confidence            6999999779999999999998887  99999986521  11222211    111    1345788999999998521  


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  166 (358)
                                    ..+.++++.+..+. |+.+|+..++..
T Consensus        78 --------------~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           78 --------------NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             --------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence                          11456667776654 577776655544

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.64  E-value=0.00053  Score=62.48  Aligned_cols=117  Identities=21%  Similarity=0.138  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  113 (358)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++..  .....++........+..+.. -+|   .+++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  8999998752  222223432111122332211 122   223332      


Q ss_pred             -CCCEEEEcCCCCCCCCCCHHhHHHHHHH----HHHHHHHHHHhhC--CCeEEEEecCCC
Q 018265          114 -GMDIVIIPAGVPRKPGMTRDDLFNINAG----IVKTLCEGIAKCC--PKAIVNLISNPV  166 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~g~~r~~~~~~N~~----i~~~i~~~i~~~~--p~a~viv~tNP~  166 (358)
                       ..|++|+.||...  ...-...+..|+.    ..+.+.+.+.+..  +.+.||++|...
T Consensus        85 g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  142 (267)
T 2gdz_A           85 GRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  142 (267)
T ss_dssp             SCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence             5799999998753  2233445566655    5666777776543  256777776543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.63  E-value=0.00013  Score=68.22  Aligned_cols=67  Identities=16%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++|||+|||+ |.+|..++..|...|.  +|.++|++..  ....+.....  .. .   ++++++++++||+||++.
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~~~~~g~--~~-~---~~~~~e~~~~aDvvi~~v   72 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQ--ACANLLAEGA--CG-A---AASAREFAGVVDALVILV   72 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTTC--SE-E---ESSSTTTTTTCSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHH--HHHHHHHcCC--cc-c---cCCHHHHHhcCCEEEEEC
Confidence            3579999998 9999999999999988  9999998752  2222332211  11 1   245678899999999985

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.63  E-value=0.00046  Score=62.97  Aligned_cols=159  Identities=18%  Similarity=0.151  Sum_probs=86.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~----  113 (358)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++........+..+.. -+|   .+++++    
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   88 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   88 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            3445899999999999999999999987  899999875  2222233322100112222211 122   223333    


Q ss_pred             ---CCCEEEEcCCCCCC--C--CCC---HHhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          114 ---GMDIVIIPAGVPRK--P--GMT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~--~--g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                         ..|++|+.||....  +  ..+   -...+..|+    .+.+.+.+.+++.. .+.||+++......          
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~----------  157 (267)
T 1iy8_A           89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIR----------  157 (267)
T ss_dssp             HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS----------
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhcc----------
Confidence               68999999997533  1  112   223345555    34456666666543 46677766543221          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                        +.|..-.++.+......+-+.++..++  +..|++.++
T Consensus       158 --~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  193 (267)
T 1iy8_A          158 --GIGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRINAI  193 (267)
T ss_dssp             --BCSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             --CCCCCccHHHHHHHHHHHHHHHHHHHH--hcCeEEEEE
Confidence              122222333433333445666777663  344544433

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.63  E-value=0.0001  Score=68.18  Aligned_cols=108  Identities=17%  Similarity=0.078  Sum_probs=68.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +++|.|+||+|++|++++..|+..+ .  +|+.++++.......++..... ..+.. .....++.++++++|+||++++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~~-~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQGA-EVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCCC-EEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            3689999999999999999998876 5  8999998763222223332111 11111 0011345678999999999986


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      .....      ....|+...+.+++.+++.... .+++.|
T Consensus        82 ~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           82 YWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             HHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             CCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            42110      1345677888888888876543 444443

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.63  E-value=0.00031  Score=63.67  Aligned_cols=154  Identities=14%  Similarity=0.108  Sum_probs=86.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQ---QLEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-----  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++..  .....++.     ..+..+.. -+   +.+++++     
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGK   83 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999987  8999998762  22222331     11222111 12   2334444     


Q ss_pred             --CCCEEEEcCCCCCCCC---------CC---HHhHHHHHHHHHHHHHHHHHhh----C-----CCeEEEEecCCCCccH
Q 018265          114 --GMDIVIIPAGVPRKPG---------MT---RDDLFNINAGIVKTLCEGIAKC----C-----PKAIVNLISNPVNSTV  170 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~g---------~~---r~~~~~~N~~i~~~i~~~i~~~----~-----p~a~viv~tNP~d~~t  170 (358)
                        ..|+||+.+|......         .+   -...+..|+.....+++.+..+    .     ..+.||+++.....  
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~--  161 (265)
T 2o23_A           84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF--  161 (265)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH--
T ss_pred             CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhc--
Confidence              8999999998653211         11   2234556665555555544433    1     34667776543210  


Q ss_pred             HHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          171 PIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       171 ~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                                .+.+..-.++.+......+-..++..+.  +..|++.++
T Consensus       162 ----------~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  198 (265)
T 2o23_A          162 ----------EGQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRVMTI  198 (265)
T ss_dssp             ----------HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ----------CCCCCCchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence                      1233333445544334445666676663  334544433

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.62  E-value=0.00062  Score=55.17  Aligned_cols=73  Identities=22%  Similarity=0.257  Sum_probs=44.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcH---H-hhhCCCCEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---E-DALTGMDIVI  119 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~-~al~~aDiVI  119 (358)
                      ++.|||+|+|+ |.+|+.++..|...+.  +++++|.+...  ...+.... ...... ...++.   . ..++++|+||
T Consensus         2 ~~~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~~~~-~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            2 SHGMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVIN-GDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEEE-SCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-CcEEEE-cCCCCHHHHHHcCcccCCEEE
Confidence            34589999998 9999999999998886  89999986521  12222110 111111 011222   2 2268999999


Q ss_pred             EcCC
Q 018265          120 IPAG  123 (358)
Q Consensus       120 i~ag  123 (358)
                      ++.+
T Consensus        75 ~~~~   78 (140)
T 1lss_A           75 AVTG   78 (140)
T ss_dssp             ECCS
T ss_pred             EeeC
Confidence            9854

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.62  E-value=0.0005  Score=63.24  Aligned_cols=158  Identities=15%  Similarity=0.103  Sum_probs=90.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .++++      
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  222223343221  12222211 122   22233      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhh-----CCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-----~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       .+.|++|+.||......   .+   -...+..|+.....+++.+...     ...+.||+++......           
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------  165 (277)
T 2rhc_B           97 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ-----------  165 (277)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS-----------
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc-----------
Confidence             37899999999753211   11   2345566777766666665433     1246777776543221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.+..-.++.+......+-+.++..++  +..|++.++-
T Consensus       166 -~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v~  202 (277)
T 2rhc_B          166 -GVVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAVC  202 (277)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTEEEEEEEE
T ss_pred             -CCCCCccHHHHHHHHHHHHHHHHHHHH--HhCcEEEEEe
Confidence             223333344444344456677777764  3455554443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.62  E-value=7.1e-05  Score=70.93  Aligned_cols=94  Identities=22%  Similarity=0.226  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH---HHHhcCCCCCeE-EE-EeCCCcHHhhhC--C
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT---ADISHMDTNAVV-RG-FLGQQQLEDALT--G  114 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~---~dl~~~~~~~~v-~~-~~~t~d~~~al~--~  114 (358)
                      |.++||+|+||+|++|++++..|+..|.  +|++++++.  .....   .++....  ..+ .. .....++.++++  +
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~~--v~~~~~Dl~d~~~l~~~~~~~~   83 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDKG--AIIVYGLINEQEAMEKILKEHE   83 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHTT--CEEEECCTTCHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhCC--cEEEEeecCCHHHHHHHHhhCC
Confidence            4457999999999999999999999886  889998865  11111   1222211  111 11 001134567788  9


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (358)
                      +|+||++++..             |+.....+++.+++.+
T Consensus        84 ~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           84 IDIVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             CCEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             CCEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            99999998752             5566678888888776

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.62  E-value=0.00076  Score=61.85  Aligned_cols=168  Identities=14%  Similarity=0.114  Sum_probs=87.5

Q ss_pred             ccccccCCCC--CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc
Q 018265           33 LGRMDCRAKG--GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ  107 (358)
Q Consensus        33 ~~~~~~~~~~--~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d  107 (358)
                      |.+++|....  ..+.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|
T Consensus         6 ~~~~~~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~   81 (273)
T 1ae1_A            6 VSMMNCNNEGRWSLKGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLS   81 (273)
T ss_dssp             ----------CCCCTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cccccccccccCCCCCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCC
Confidence            4455555432  23456899999999999999999999987  899999875  222223333221  12222211 122


Q ss_pred             ---HHhhh--------CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCCC
Q 018265          108 ---LEDAL--------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       108 ---~~~al--------~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP~  166 (358)
                         .++++        ...|++|+.||.....   ..+   -...+..|+.....++    +.+++. ..+.||+++...
T Consensus        82 ~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~  160 (273)
T 1ae1_A           82 RTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIA  160 (273)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHh
Confidence               22222        5789999999875321   112   2233445655444444    444443 346777776543


Q ss_pred             CccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       167 d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ...            +.|..-.++.+......+-+.++..+.  +..|++.++
T Consensus       161 ~~~------------~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  199 (273)
T 1ae1_A          161 GFS------------ALPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSV  199 (273)
T ss_dssp             GTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hcC------------CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            221            233333344444334456677777763  344544443

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.62  E-value=0.00067  Score=61.25  Aligned_cols=118  Identities=20%  Similarity=0.213  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc----HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ----LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~e-l~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~al------  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  + |+++|++.......++........+..+... +|    .++++      
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            446899999999999999999999886  5 8899987522222233221111233322111 12    22223      


Q ss_pred             -CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH----hhC--CCeEEEEecCCC
Q 018265          113 -TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA----KCC--PKAIVNLISNPV  166 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~----~~~--p~a~viv~tNP~  166 (358)
                       .+.|+||+.||...  ...-...+..|+.....+++.+.    +..  +.+.|+++|...
T Consensus        82 ~g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~  140 (254)
T 1sby_A           82 LKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVT  140 (254)
T ss_dssp             HSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             cCCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchh
Confidence             37899999998642  22334456667655555555443    322  246777776543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.62  E-value=0.00053  Score=62.31  Aligned_cols=157  Identities=20%  Similarity=0.242  Sum_probs=86.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDALT------  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~------  113 (358)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++........+..+.. -+   +.+++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999987  899999875  2222233321100112222211 12   2333444      


Q ss_pred             CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      +.|++|+.+|......   .+   -...+..|+...    +.+.+.+.+.. .+.||+++......            +.
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~~  151 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGSVTLLR------------PW  151 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------CC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhcC------------CC
Confidence            5999999998653211   11   223445565544    55555555443 46777766533211            22


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +..-.++.+......+-+.++..++  +..|++.++
T Consensus       152 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  185 (260)
T 2z1n_A          152 QDLALSNIMRLPVIGVVRTLALELA--PHGVTVNAV  185 (260)
T ss_dssp             TTBHHHHHHTHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            2223344444334456677777763  334544433

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.61  E-value=0.00054  Score=63.52  Aligned_cols=123  Identities=12%  Similarity=0.096  Sum_probs=73.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC---CCCeEEEEeCC-Cc---HHhhh
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TNAVVRGFLGQ-QQ---LEDAL  112 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~---~~~~v~~~~~t-~d---~~~al  112 (358)
                      ...+.++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++....   ....+..+... +|   .++++
T Consensus        14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~   91 (303)
T 1yxm_A           14 GLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   91 (303)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHH
Confidence            345567999999999999999999999987  899999875  222233343210   11233332211 22   22333


Q ss_pred             C-------CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCC
Q 018265          113 T-------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV  166 (358)
Q Consensus       113 ~-------~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  166 (358)
                      +       ..|+||++||......   .+   -...+..|+.....+++.+...   ...+.|++++...
T Consensus        92 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~  161 (303)
T 1yxm_A           92 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT  161 (303)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec
Confidence            3       5899999998643211   12   2334566776666666664432   1246677776554

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.61  E-value=3.7e-05  Score=71.59  Aligned_cols=163  Identities=16%  Similarity=0.194  Sum_probs=92.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhC--CCCEEEEcC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVIIPA  122 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi~a  122 (358)
                      ||.|+||+|++|++++..|+..  +.  +|+.+|++.....     ..   ..+.. .....++.++++  ++|+||+++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~~---~~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----GI---KFITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----TC---CEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----Cc---eEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            5899999999999999999876  55  7888887542110     00   11111 000123455666  899999999


Q ss_pred             CCCCCCC-CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHH
Q 018265          123 GVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (358)
Q Consensus       123 g~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~  201 (358)
                      +...... ......+..|+.....+++.+.+.... .+|++|...-.-...-...........+...+|.+.....++..
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~  149 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQ  149 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHHH
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHHHHHH
Confidence            8642111 233456788999999999999876543 45544322100000000000000011233456666666666666


Q ss_pred             HHHHHhCCCCCCCc-eEEEEe
Q 018265          202 FVAEVLGLDPREVD-VPVVGG  221 (358)
Q Consensus       202 ~lA~~l~v~~~~v~-~~v~G~  221 (358)
                      .+++..|++..-++ ..++|.
T Consensus       150 ~~~~~~~~~~~~lR~~~~~g~  170 (317)
T 3ajr_A          150 YYYEKFGLDVRSLRYPGIISY  170 (317)
T ss_dssp             HHHHHHCCEEEEEEECEEECS
T ss_pred             HHHHhcCCeEEEEecCcEecc
Confidence            66677777665554 556774

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.61  E-value=0.0011  Score=60.60  Aligned_cols=121  Identities=19%  Similarity=0.222  Sum_probs=71.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh---
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL---  112 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al---  112 (358)
                      ...+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .++++   
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~  102 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKV  102 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHH
Confidence            445667999999999999999999999987  899999875  222223333221  12222211 122   22223   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          113 ----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       113 ----~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                          .+.|+||++||......   .+   ....+..|+..    .+.+.+.+.+. ..+.||+++....
T Consensus       103 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~  170 (272)
T 1yb1_A          103 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAG  170 (272)
T ss_dssp             HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-
T ss_pred             HHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechhh
Confidence                37899999998753221   11   22345566655    44444444433 3567777766543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.61  E-value=0.00012  Score=69.19  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-C----CCCCeEEE-EeCCCcHHhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-M----DTNAVVRG-FLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-~----~~~~~v~~-~~~t~d~~~al~~aDiVI  119 (358)
                      +|||+|||+ |.+|..++..|...|.  +|.++ .++.  ....+.. .    ........ ...++|. ++++++|+||
T Consensus        19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~--~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   91 (318)
T 3hwr_A           19 GMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQ--HVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVL   91 (318)
T ss_dssp             -CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHH--HHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHh--HHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEE
Confidence            579999998 9999999999999887  89999 6541  1111211 0    00001110 1123465 4579999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccH
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTV  170 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t  170 (358)
                      ++.-..                -+.++++.+..+. |+..|+.++|.++...
T Consensus        92 lavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~  127 (318)
T 3hwr_A           92 FCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENAD  127 (318)
T ss_dssp             ECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHH
T ss_pred             EEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHH
Confidence            985211                1345566666654 6788888899998753

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.61  E-value=0.00077  Score=61.89  Aligned_cols=91  Identities=19%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||+|||+ |.+|..++..|...+.  +|+++|++....  ..+.......  ..   ++|++++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g~~~--~~---~~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTC--EKAVERQLVD--EA---GQDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhCCCCc--cc---cCCHHHh-CCCCEEEEECCH--
Confidence            69999998 9999999999998887  899999875211  1122211111  11   2456677 999999998521  


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  164 (358)
                                    ..+.++++.+..+. |+.+|+.++|
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          23455566666554 5777766544

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.60  E-value=0.00029  Score=63.77  Aligned_cols=158  Identities=14%  Similarity=0.133  Sum_probs=87.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~----  113 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|+ +.  ......++....  ..+..+.. -+|   .+++++    
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   81 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998 43  222223333221  22322211 122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 ---GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                         +.|+||++||.....   ..+   -...+..|+....    .+.+.+.+..+.+.||++|.-...            
T Consensus        82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~------------  149 (261)
T 1gee_A           82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK------------  149 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT------------
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhc------------
Confidence               789999999875321   112   2234455554444    444445444335677777653211            


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+.|..-.++.+......+...++..+.  +..+++.++-
T Consensus       150 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  187 (261)
T 1gee_A          150 IPWPLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNIG  187 (261)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            1233333445544444456666777663  3345544443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.60  E-value=0.00024  Score=67.54  Aligned_cols=98  Identities=17%  Similarity=0.161  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC-C------CCCe-EEEEeCCCcHHhhhCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-D------TNAV-VRGFLGQQQLEDALTGM  115 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~-~------~~~~-v~~~~~t~d~~~al~~a  115 (358)
                      |++|||+|||+ |.+|..++..|...+.  +|.++|+++...  ..+... .      .... .+....++|++++++++
T Consensus         2 m~~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (359)
T 1bg6_A            2 IESKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRI--KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDA   76 (359)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTC
T ss_pred             CCcCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHhcCCeEEeccccccccccceecCCHHHHHhcC
Confidence            34589999998 9999999999998887  899999875211  111110 0      0000 00000135777889999


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI  162 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~  162 (358)
                      |+||++.....                ..++++.+..+. ++.+|+..
T Consensus        77 D~vi~~v~~~~----------------~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           77 DVILIVVPAIH----------------HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             SEEEECSCGGG----------------HHHHHHHHGGGCCTTCEEEES
T ss_pred             CEEEEeCCchH----------------HHHHHHHHHHhCCCCCEEEEc
Confidence            99999863210                134556665554 56656555

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.60  E-value=0.0013  Score=58.91  Aligned_cols=162  Identities=15%  Similarity=0.137  Sum_probs=89.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC-CCCeEEEEeC-CCc---HHhh---
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TNAVVRGFLG-QQQ---LEDA---  111 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~-~~~~v~~~~~-t~d---~~~a---  111 (358)
                      ...+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ....+..... .+|   .+++   
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~   87 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAAR   87 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHH
Confidence            345566899999999999999999999997  899999876  222233333221 1112211111 012   1222   


Q ss_pred             ----hCCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHH
Q 018265          112 ----LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       112 ----l~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~  176 (358)
                          +...|++|+.||.....+    .+   -...+..|+.....+.+.+    ++ ...+.|++++......       
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~~~iv~isS~~~~~-------  159 (247)
T 3i1j_A           88 VEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKR-SEDASIAFTSSSVGRK-------  159 (247)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-SSSEEEEEECCGGGTS-------
T ss_pred             HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-CCCCeEEEEcchhhcC-------
Confidence                237899999998642211    12   2234555655554444444    43 2456777776543221       


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                           +.+..-.++.+......+-+.++..+. ....|++..+
T Consensus       160 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~-~~~~i~v~~v  196 (247)
T 3i1j_A          160 -----GRANWGAYGVSKFATEGLMQTLADELE-GVTAVRANSI  196 (247)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHHHHHT-TTSSEEEEEE
T ss_pred             -----CCCCcchhHHHHHHHHHHHHHHHHHhc-CCCCeEEEEE
Confidence                 233333445544444556777777774 1234444333

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.60  E-value=0.00058  Score=61.26  Aligned_cols=145  Identities=13%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-------  113 (358)
                      ++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|   .+++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999987  899999875  222222331111 122332211 122   333343       


Q ss_pred             CCCEEEEcCCCCCCCC------CC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 GMDIVIIPAGVPRKPG------MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g------~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      +.|+||+.+|......      .+   -...+..|+...    +.+.+.+.+.. .+.|++++......           
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~-----------  147 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIASVASLV-----------  147 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-----------
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhcc-----------
Confidence            7999999998643211      11   223345565444    45555555443 46677766443211           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHh
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l  207 (358)
                       +.|..-.++.+......+-+.+++.+
T Consensus       148 -~~~~~~~Y~~sK~a~~~~~~~l~~e~  173 (250)
T 2cfc_A          148 -AFPGRSAYTTSKGAVLQLTKSVAVDY  173 (250)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHh
Confidence             22333344444444445666677666

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.59  E-value=0.00023  Score=64.52  Aligned_cols=117  Identities=15%  Similarity=0.085  Sum_probs=74.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~----  113 (358)
                      +.++|.|+||+|++|++++..|+. .|.  +|++++++.  ......++....  ..+..+.. -+|   .+++++    
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999 887  899999875  222233343321  11222111 122   233333    


Q ss_pred             ---CCCEEEEcCCCCCCCC------CCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 018265          114 ---GMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  165 (358)
                         +.|+||++||......      ..-...+..|+.....+++.+..+. +.+.||+++.-
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~  140 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  140 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence               7899999998753221      1123456778888888888887663 34577776653

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.59  E-value=0.00012  Score=69.96  Aligned_cols=162  Identities=11%  Similarity=0.009  Sum_probs=89.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCC---CCCeEEEEeCC-C---cHHhhhCC--
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD---TNAVVRGFLGQ-Q---QLEDALTG--  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~---~~~~v~~~~~t-~---d~~~al~~--  114 (358)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....   ....+..+... +   ++.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            4899999999999999999999886  99999986421   1111111000   01223332211 2   33455664  


Q ss_pred             CCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCC--CeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      .|+||++||.....  .......+..|+.....+++.+.+...  ...+|++|...-.-.. ....+.......+...+|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~-~~~~~~E~~~~~~~~~Y~  181 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKV-QEIPQKETTPFYPRSPYG  181 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSC-SSSSBCTTSCCCCCSHHH
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCC-CCCCCCccCCCCCCChhH
Confidence            59999999864211  112345567888999999999887653  1466665432100000 000000001122334556


Q ss_pred             eeeccHHHHHHHHHHHhCCCC
Q 018265          191 VTMLDVVRANTFVAEVLGLDP  211 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~  211 (358)
                      .+.....++...+++.++++.
T Consensus       182 ~sK~~~e~~~~~~~~~~~~~~  202 (375)
T 1t2a_A          182 AAKLYAYWIVVNFREAYNLFA  202 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCE
Confidence            665555666666777777654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.59  E-value=0.00018  Score=62.01  Aligned_cols=139  Identities=13%  Similarity=0.072  Sum_probs=80.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCc---HHhh--hCCCC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA--LTGMD  116 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a--l~~aD  116 (358)
                      +...+||+|+|+ |.+|..++..|... |.  +++++|.++..  ...+..... ..+.+  ..++   +.++  ++++|
T Consensus        36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~--~~~~~~~g~-~~~~g--d~~~~~~l~~~~~~~~ad  107 (183)
T 3c85_A           36 NPGHAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEA--AQQHRSEGR-NVISG--DATDPDFWERILDTGHVK  107 (183)
T ss_dssp             CCTTCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHH--HHHHHHTTC-CEEEC--CTTCHHHHHTBCSCCCCC
T ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHH--HHHHHHCCC-CEEEc--CCCCHHHHHhccCCCCCC
Confidence            445679999998 99999999999887 87  89999987522  122222111 11111  1122   3444  78999


Q ss_pred             EEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccH
Q 018265          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV  196 (358)
Q Consensus       117 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds  196 (358)
                      +||++.+..           ..|.    .++..+++.+|+..++..+|-.+..     +.+.+. |  .+.++.-...-.
T Consensus       108 ~vi~~~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~~~-----~~l~~~-G--~~~vi~p~~~~a  164 (183)
T 3c85_A          108 LVLLAMPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPDQL-----EGLLES-G--VDAAFNIYSEAG  164 (183)
T ss_dssp             EEEECCSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHHHH-----HHHHHH-T--CSEEEEHHHHHH
T ss_pred             EEEEeCCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHc-C--CCEEEchHHHHH
Confidence            999975421           2233    3344566667777776665432221     223443 3  245555444444


Q ss_pred             HHHHHHHHHHhCCCCC
Q 018265          197 VRANTFVAEVLGLDPR  212 (358)
Q Consensus       197 ~R~~~~lA~~l~v~~~  212 (358)
                      .++...+.+.++.+..
T Consensus       165 ~~l~~~~~~~~~~~~~  180 (183)
T 3c85_A          165 SGFARHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHhcCCccc
Confidence            4555666666665544

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.59  E-value=0.00031  Score=67.67  Aligned_cols=95  Identities=13%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCC---CEEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM---DIVII  120 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a---DiVIi  120 (358)
                      ++.|||+|||. |.+|..++..|+..|.  +|.++|++.  ..+.++....    +.   ..++++++++++   |+||+
T Consensus        20 m~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~--~~~~~l~~~g----~~---~~~s~~e~~~~a~~~DvVi~   87 (358)
T 4e21_A           20 FQSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNV--NAVQALEREG----IA---GARSIEEFCAKLVKPRVVWL   87 (358)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH--HHHHHHHTTT----CB---CCSSHHHHHHHSCSSCEEEE
T ss_pred             hcCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCH--HHHHHHHHCC----CE---EeCCHHHHHhcCCCCCEEEE
Confidence            44589999998 9999999999999997  999999875  2222333321    11   235678888888   99999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  166 (358)
                      +...+                .+.++++.+.... |+.+||..||-.
T Consensus        88 ~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           88 MVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             CSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             eCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            85211                2334445555554 677777766543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.58  E-value=0.00011  Score=67.55  Aligned_cols=99  Identities=17%  Similarity=0.214  Sum_probs=64.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-CCCe--EEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAV--VRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-~~~~--v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||+|||+ |.+|+.++..|...|.  +|.++|+++....  ++.... ....  ....  .++ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~--~~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLT--AND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEE--ESC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeee--ecC-ccccCCCCEEEEEec
Confidence            69999998 9999999999999887  9999998762111  121110 0111  1111  134 467899999999853


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCcc
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~  169 (358)
                      ..                .+.++++.+..+. |+.+|+..+|..+..
T Consensus        73 ~~----------------~~~~v~~~l~~~l~~~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           73 AW----------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (291)
T ss_dssp             GG----------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             HH----------------hHHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence            21                0244555666554 677788789987654

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.58  E-value=0.00038  Score=63.22  Aligned_cols=156  Identities=15%  Similarity=0.060  Sum_probs=83.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .++++      
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999987  899999875  222223333221  12222211 122   22333      


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                        .+.|+||+.||.....   ..+   -...+..|+.....+.+.+    ++.. .+.||+++......           
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~-----------  156 (266)
T 1xq1_A           89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV-----------  156 (266)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-----------------
T ss_pred             hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccchhcc-----------
Confidence              5789999999864321   112   2334566766555555554    4443 45677766543221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.+....++.+......+-+.+++.+.  +..+++.++
T Consensus       157 -~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  192 (266)
T 1xq1_A          157 -SASVGSIYSATKGALNQLARNLACEWA--SDGIRANAV  192 (266)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHHh--HhCcEEEEE
Confidence             122233445544444456667777763  234444433

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.57  E-value=0.00078  Score=61.04  Aligned_cols=155  Identities=18%  Similarity=0.223  Sum_probs=86.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-------  113 (358)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++....  ..+..+. .-+|   .+++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3799999999999999999999987  899999875  222233343221  1222221 1122   233333       


Q ss_pred             CCCEEEEcCCCCCCCC---CCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|++|+.||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.||+++.-....            +.
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~  146 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------GN  146 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC------------CC
Confidence            7999999998643211   121   233455554    4455555565544356777776543221            22


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      |..-.++.+......+-+.++..++  +..|++.++
T Consensus       147 ~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  180 (256)
T 1geg_A          147 PELAVYSSSKFAVRGLTQTAARDLA--PLGITVNGY  180 (256)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence            2222344443334456667777663  344544443

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.57  E-value=3.1e-05  Score=70.39  Aligned_cols=151  Identities=14%  Similarity=0.060  Sum_probs=87.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhh-------CCCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL-------TGMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~aDiV  118 (358)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++|++......         ..+.. .+...+.++++       ...|+|
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~---------~~~~~d~~d~~~v~~~~~~~~~~~g~iD~l   91 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNAD---------HSFTIKDSGEEEIKSVIEKINSKSIKVDTF   91 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSS---------EEEECSCSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccc---------cceEEEeCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4799999999999999999999987  89999987621100         00000 00111222222       356999


Q ss_pred             EEcCCCCCCC----CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          119 IIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       119 Ii~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      |+.||.....    ..+   -...+..|+.....+.+.+..+- +.+.||++|......            +.+..-.++
T Consensus        92 i~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~~Y~  159 (251)
T 3orf_A           92 VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN------------RTSGMIAYG  159 (251)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCTTBHHHH
T ss_pred             EECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc------------CCCCCchhH
Confidence            9999864321    111   23345667777777777666543 346777776543221            233333445


Q ss_pred             eeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+......+-+.++..++..+..|++.++-
T Consensus       160 ~sKaa~~~~~~~la~e~~~~~~gi~v~~v~  189 (251)
T 3orf_A          160 ATKAATHHIIKDLASENGGLPAGSTSLGIL  189 (251)
T ss_dssp             HHHHHHHHHHHHHTSTTSSSCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCcEEEEEe
Confidence            544334445566666654335566655544

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.57  E-value=0.0004  Score=63.63  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhc-CCCCCeEEEEeC-CC---cHHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTNAVVRGFLG-QQ---QLEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~-~~~~~~v~~~~~-t~---d~~~al~----  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.. ......+..+.. -+   +.+++++    
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  2222233311 001122332211 12   2334444    


Q ss_pred             ---CCCEEEEcCCCCCCC---CC----C---HHhHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCCCC-ccHHHHHH
Q 018265          114 ---GMDIVIIPAGVPRKP---GM----T---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVN-STVPIAAE  175 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~---g~----~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP~d-~~t~~~~~  175 (358)
                         +.|++|+.||.....   ..    +   -...+..|+.....++    +.+++..  +.||+++.-.. ..      
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~------  154 (278)
T 1spx_A           83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLH------  154 (278)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSS------
T ss_pred             HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEeccccccc------
Confidence               899999999864321   11    2   1233455654444444    4443333  67777765443 21      


Q ss_pred             HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       176 ~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                            +.|..-.++.+......+-+.++..+.  +..|++.++
T Consensus       155 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  190 (278)
T 1spx_A          155 ------ATPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRVNSI  190 (278)
T ss_dssp             ------CCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             ------CCCCccHHHHHHHHHHHHHHHHHHHHH--hcCcEEEEE
Confidence                  222223344444344456666776653  344544443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.57  E-value=0.00014  Score=67.49  Aligned_cols=65  Identities=15%  Similarity=0.190  Sum_probs=48.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++||+|||+ |.+|..++..|+..|.  +|.++|++......  +.+..    +..   ++++++++++||+||++.
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~--~~~~g----~~~---~~~~~~~~~~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCAP--LVALG----ARQ---ASSPAEVCAACDITIAML   65 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGHH--HHHHT----CEE---CSCHHHHHHHCSEEEECC
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH--HHHCC----Cee---cCCHHHHHHcCCEEEEEc
Confidence            368999998 9999999999998887  89999987622211  11111    121   356789999999999985

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.57  E-value=0.00049  Score=68.84  Aligned_cols=106  Identities=8%  Similarity=0.106  Sum_probs=67.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC---CCEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIV  118 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiV  118 (358)
                      |.+.++||+|||+ |.+|.+++..|+..|.  +|.++|++..  .+.++........+..   ++|+++++++   +|+|
T Consensus        11 ~~~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~--~~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvV   82 (480)
T 2zyd_A           11 HHMSKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSRE--KTEEVIAENPGKKLVP---YYTVKEFVESLETPRRI   82 (480)
T ss_dssp             ----CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHH--HHHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEE
T ss_pred             cccCCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHH--HHHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEE
Confidence            4566789999998 9999999999999887  8999998752  2222221100112332   3577787777   9999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccH
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTV  170 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t  170 (358)
                      |++...    ++           .++++++.+..+. |+.+||..+|-....+
T Consensus        83 il~Vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t  120 (480)
T 2zyd_A           83 LLMVKA----GA-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDT  120 (480)
T ss_dssp             EECSCS----SS-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHHH
T ss_pred             EEECCC----HH-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHHH
Confidence            998532    11           2334445555554 5778888888765443

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.56  E-value=0.00044  Score=62.86  Aligned_cols=158  Identities=19%  Similarity=0.160  Sum_probs=90.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  112 (358)
                      .+.+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++....  ..+..+.. -+|   .++++     
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~   85 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALD   85 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  899999876  222333443321  22222211 122   22223     


Q ss_pred             --CCCCEEEEcCCCCCCC--CCCH---HhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 --TGMDIVIIPAGVPRKP--GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        ...|++|+.||.....  ..+.   ...+..|+.-...+++.    +.+. ..+.||+++......            
T Consensus        86 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------  152 (256)
T 3gaf_A           86 QFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISSMAGEN------------  152 (256)
T ss_dssp             HHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTC------------
T ss_pred             HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHHHcC------------
Confidence              3789999999875321  2222   23345565544444444    4433 457788776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.|+.+......+-+.+|..++  +..|++..+.
T Consensus       153 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v~  189 (256)
T 3gaf_A          153 TNVRMASYGSSKAAVNHLTRNIAFDVG--PMGIRVNAIA  189 (256)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEEE
Confidence            233333455554444566777787774  3445544443

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.56  E-value=0.00056  Score=63.14  Aligned_cols=181  Identities=14%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             hcCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCC
Q 018265           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMD   94 (358)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~   94 (358)
                      |-||--.+..-..+.|..+..    ..+.+.+.|+||+|.+|.+++..|+..|.  +|+++|.+.   ......++....
T Consensus         5 ~~~~~~~~~~~~n~~~~~mm~----~~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~   78 (280)
T 4da9_A            5 HHHSSGVDLGTENLYFQSMMT----QKARPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG   78 (280)
T ss_dssp             ------------------CCS----CCCCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT
T ss_pred             ccCcccccccccchhhhhhhh----ccCCCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC
Confidence            445555555555544444432    12345799999999999999999999987  899999754   222233443321


Q ss_pred             CCCeEEEEeC----CCcHHhhhC-------CCCEEEEcCCCC--C-CC--CCCH---HhHHHHHH----HHHHHHHHHHH
Q 018265           95 TNAVVRGFLG----QQQLEDALT-------GMDIVIIPAGVP--R-KP--GMTR---DDLFNINA----GIVKTLCEGIA  151 (358)
Q Consensus        95 ~~~~v~~~~~----t~d~~~al~-------~aDiVIi~ag~~--~-~~--g~~r---~~~~~~N~----~i~~~i~~~i~  151 (358)
                        ..+..+..    ..+.+++++       ..|++|+.||..  . .+  ..+.   ...+..|+    .+.+.+.+.+.
T Consensus        79 --~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~  156 (280)
T 4da9_A           79 --ARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAML  156 (280)
T ss_dssp             --CCEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             --CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence              22222211    123333343       789999999973  1 11  1121   22233454    44555666665


Q ss_pred             hhCC--CeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          152 KCCP--KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       152 ~~~p--~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +...  .+.||+++.-....            +.|..-.++.+......+-+.+|..++  +..|++..+-
T Consensus       157 ~~~~~~~g~Iv~isS~~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  213 (280)
T 4da9_A          157 ASDARASRSIINITSVSAVM------------TSPERLDYCMSKAGLAAFSQGLALRLA--ETGIAVFEVR  213 (280)
T ss_dssp             HHCCCCCEEEEEECCC-------------------CCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             HhCCCCCCEEEEEcchhhcc------------CCCCccHHHHHHHHHHHHHHHHHHHHH--HhCcEEEEEe
Confidence            5442  56777776544322            122223345554444556777888774  4456554443

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.56  E-value=0.00057  Score=61.99  Aligned_cols=152  Identities=17%  Similarity=0.161  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLG-QQ---QLEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-----  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++...  ....++   .  ..+..+.. -+   +.+++++     
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATAREL---G--DAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT---G--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh---C--CceeEEEecCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  89999987521  111112   1  12222111 12   2233333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        +.|++|+.||.....   ..+   -...+..|+..    .+.+.+.+++.. .+.||+++.-....            
T Consensus        77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------  143 (254)
T 1hdc_A           77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLM------------  143 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhcc------------
Confidence              899999999875321   111   22344556543    346666666543 46777776543211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                      +.|..-.++.+......+-+.++..++  +..|++.+
T Consensus       144 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~  178 (254)
T 1hdc_A          144 GLALTSSYGASKWGVRGLSKLAAVELG--TDRIRVNS  178 (254)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEEEE
Confidence            223233344443334456666777663  33444433

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.56  E-value=0.00036  Score=63.50  Aligned_cols=154  Identities=19%  Similarity=0.226  Sum_probs=83.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEe-CCC---cHHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQ---QLEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~-----  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++...  ....++..     .+..+. .-+   +.+++++     
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~   83 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDA   83 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  89999987521  11111211     111111 112   2333444     


Q ss_pred             --CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        +.|+||+.||......   .+   -...+..|+.....    ..+.+.+....+.|++++......            
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------  151 (263)
T 3ak4_A           84 LGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV------------  151 (263)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc------------
Confidence              8999999998653211   11   22344556544444    444444333246677765432111            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.|..-.++.+......+-+.++..+.  +..|++.++
T Consensus       152 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  187 (263)
T 3ak4_A          152 GAPLLAHYSASKFAVFGWTQALAREMA--PKNIRVNCV  187 (263)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHh--HcCeEEEEE
Confidence            223333344444444456667777663  334544333

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.56  E-value=0.0011  Score=61.01  Aligned_cols=159  Identities=16%  Similarity=0.165  Sum_probs=88.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCC---cHHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQ---QLEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~----  113 (358)
                      .+.+++.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++....  ..+..+. .-+   +.+++++    
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~  105 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTG  105 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3445899999999999999999999987  899999876  233334444322  1111111 112   2333333    


Q ss_pred             ---CCCEEEEcCCCCCCCC---CCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 ---GMDIVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                         ..|++|+.||......   .+.   ...+..|+.    +.+.+.+.+.+....+.|++++.-....           
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~-----------  174 (276)
T 3r1i_A          106 ELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHI-----------  174 (276)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcc-----------
Confidence               7899999999753221   121   223445554    4455555555554447777766433221           


Q ss_pred             CCCC-CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYD-PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p-~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ...+ ..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       175 ~~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  212 (276)
T 3r1i_A          175 INIPQQVSHYCTSKAAVVHLTKAMAVELA--PHQIRVNSV  212 (276)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            0111 112234444344556677777764  344544443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.56  E-value=0.0001  Score=69.41  Aligned_cols=114  Identities=16%  Similarity=0.216  Sum_probs=70.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-----CCCeEEE--EeCCCcHHhhhCCCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVRG--FLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-----~~~~v~~--~~~t~d~~~al~~aDiVI  119 (358)
                      |||+|||+ |.+|..++..|...|.  +|.++|++..    ..+....     .......  ...+++. +++.++|+||
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~----~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~vi   74 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY----EAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLVL   74 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH----HHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH----HHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEEE
Confidence            69999998 9999999999999887  8999998652    1122110     0011111  1112455 4578999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      ++.-.    ..            +.++++.++.+- |+..|+.+.|-++....+     .+.  +|..++++-
T Consensus        75 lavk~----~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l-----~~~--~~~~~v~~~  124 (312)
T 3hn2_A           75 VGLKT----FA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEAL-----ATL--FGAERIIGG  124 (312)
T ss_dssp             ECCCG----GG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHHH-----HHH--TCGGGEEEE
T ss_pred             EecCC----CC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHHH-----HHH--CCCCcEEEE
Confidence            98521    11            223445555543 688888889998765322     333  566677654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.56  E-value=0.00047  Score=63.05  Aligned_cols=158  Identities=15%  Similarity=0.177  Sum_probs=90.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCcHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al------  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++.... ...+..+.    ...+.++++      
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  899999876  222233333210 11222211    112222333      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.||......   .+   -...+..|+.    +.+.+.+.+.+....+.||+++.-....            
T Consensus        96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------  163 (266)
T 4egf_A           96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA------------  163 (266)
T ss_dssp             HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc------------
Confidence             37899999999754221   12   1223455544    4555555565555567788776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.+..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       164 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gI~vn~v  199 (266)
T 4egf_A          164 PLPDHYAYCTSKAGLVMATKVLARELG--PHGIRANSV  199 (266)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            233333445544444556777787774  344554444

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.55  E-value=0.00016  Score=67.97  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..+||+|||. |.+|..++..|...|+  +|.++|++...  ...+....    +..   .+++++++++||+||++.
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~v   73 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVL   73 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEe
Confidence            4579999998 9999999999999987  89999987521  12222111    111   356789999999999985

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.55  E-value=0.00023  Score=74.20  Aligned_cols=117  Identities=20%  Similarity=0.077  Sum_probs=72.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhc--CCCCCeEEE-EeCCCcHHhhhC--CCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH--MDTNAVVRG-FLGQQQLEDALT--GMD  116 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~--~~~~~~v~~-~~~t~d~~~al~--~aD  116 (358)
                      ++.++|.|+||+|++|++++..|+..|.  +|+++|++.  ......++..  ......+.. +....++.++++  ++|
T Consensus         9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A            9 STSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence            4457999999999999999999999886  899999764  1111112211  111011111 001123455666  899


Q ss_pred             EEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       117 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +||++|+.....  .....+.+..|+.....+++.+++.... .+|++|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            999999864211  0123456788999999999999877543 445444

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.55  E-value=4.9e-05  Score=68.20  Aligned_cols=156  Identities=15%  Similarity=0.051  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh---------CCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL---------TGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al---------~~a  115 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++...... ....  ...++..   ..+.++++         .+.
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~-~~~~--~~~D~~~---~~~~~~~~~~~~~~~~~g~i   73 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQAD-SNIL--VDGNKNW---TEQEQSILEQTASSLQGSQV   73 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSS-EEEE--CCTTSCH---HHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCcccccc-ccEE--EeCCCCC---HHHHHHHHHHHHHHhCCCCC
Confidence            345899999999999999999999987  89999987621100 0000  0001100   01122222         378


Q ss_pred             CEEEEcCCCCCCC----CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          116 DIVIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       116 DiVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      |+||+.||.....    ..+   -...+..|+.....+.+.+..+- ..+.|++++......            +.|..-
T Consensus        74 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~  141 (236)
T 1ooe_A           74 DGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG------------PTPSMI  141 (236)
T ss_dssp             EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCTTBH
T ss_pred             CEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc------------CCCCcH
Confidence            9999999864321    111   23445677777666666665543 246777776543221            233333


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .++.+......+.+.++..++..+..|++.++-
T Consensus       142 ~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~  174 (236)
T 1ooe_A          142 GYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIM  174 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEe
Confidence            344443333445566666654335556554443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=97.54  E-value=0.00018  Score=75.56  Aligned_cols=101  Identities=19%  Similarity=0.197  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhH--HHH----HhcCCC---------CCeEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TAD----ISHMDT---------NAVVRGFLGQQ  106 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~--~~d----l~~~~~---------~~~v~~~~~t~  106 (358)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+.  ..+    +.....         ..+++.   ++
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  386 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL  386 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---EC
Confidence            4568999998 9999999999999998  9999999861   111  010    111100         012443   35


Q ss_pred             cHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                      |+ +++++||+||++.-              .+..+.+++...+.+++ |++++  +||...+
T Consensus       387 d~-~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl  432 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTI  432 (715)
T ss_dssp             SS-TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             CH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCC
Confidence            66 78999999999852              24566677778888887 56644  5665544

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.54  E-value=0.0013  Score=59.97  Aligned_cols=158  Identities=20%  Similarity=0.227  Sum_probs=90.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++.... ...+..+.. -+|   .++++      
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  999999876  233344454332 123333211 122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.||.....   ..+.   ...+..|+.-...    +.+.+.+.. .+.||+++.-....           .
T Consensus        86 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~-----------~  153 (262)
T 3pk0_A           86 FGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSITGPI-----------T  153 (262)
T ss_dssp             HSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCSBTTT-----------B
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEechhhcc-----------C
Confidence             2899999999864321   1222   2235556554444    444444333 46677766544221           1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.|..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       154 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  189 (262)
T 3pk0_A          154 GYPGWSHYGATKAAQLGFMRTAAIELA--PHKITVNAI  189 (262)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCChhhHHHHHHHHHHHHHHHHHHH--hhCcEEEEE
Confidence            233333455554444567777887764  344544433

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.53  E-value=0.00032  Score=64.65  Aligned_cols=174  Identities=17%  Similarity=0.094  Sum_probs=95.5

Q ss_pred             cccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-
Q 018265           28 GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-  104 (358)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-  104 (358)
                      .+...|..+.....-+.+..++.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++....  ..+..+.. 
T Consensus        15 ~~~~~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D   90 (275)
T 4imr_A           15 TENLYFQSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQELAGD   90 (275)
T ss_dssp             ---CCSCTTSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECC
T ss_pred             ccccccccccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEec
Confidence            34444554443333334556899999999999999999999997  899999976  333334443321  22222211 


Q ss_pred             ---CCcHHhhh------CCCCEEEEcCCCCCCCC---CCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 018265          105 ---QQQLEDAL------TGMDIVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       105 ---t~d~~~al------~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                         ..+.++++      ...|++|+.||......   .+.   ...+..|+.    +.+.+.+.+.+. ..+.||+++.-
T Consensus        91 v~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~  169 (275)
T 4imr_A           91 LSEAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSIGSI  169 (275)
T ss_dssp             TTSTTHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCH
Confidence               12222333      27899999998753221   122   223455654    444444545544 35777777653


Q ss_pred             CCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       166 ~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ....            ..+..-.++.+......+-+.+|..++  +..|++..+-
T Consensus       170 ~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  210 (275)
T 4imr_A          170 NQLR------------PKSVVTAYAATKAAQHNLIQSQARDFA--GDNVLLNTLA  210 (275)
T ss_dssp             GGTS------------CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HhCC------------CCCCchhhHHHHHHHHHHHHHHHHHhc--ccCcEEEEEE
Confidence            3211            122222245544444556777888774  3445554443

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.53  E-value=0.00098  Score=60.52  Aligned_cols=118  Identities=11%  Similarity=0.062  Sum_probs=71.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  112 (358)
                      ++.+++.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++....  ..+..+.. -+|   .++++     
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDE   79 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999987  899999876  222333443321  23332211 122   22333     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCC
Q 018265          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP  165 (358)
                        ...|++|+.||.....   ..+   -...+..|+....    .+.+.+.+....+.|++++..
T Consensus        80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  144 (257)
T 3imf_A           80 KFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVAT  144 (257)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECch
Confidence              3789999999864321   112   1233455655444    444444444556777777653

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.53  E-value=0.00092  Score=61.49  Aligned_cols=171  Identities=15%  Similarity=0.150  Sum_probs=91.4

Q ss_pred             ccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC-CC
Q 018265           29 ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG-QQ  106 (358)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~  106 (358)
                      ....|+++.-  .-..+.+++.|+||+|.+|.+++..|+..|.  +|+++|.+. ......++....  ..+..+.. -+
T Consensus        16 ~~~~~~~m~~--~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~   89 (273)
T 3uf0_A           16 ENLYFQSMTG--PFSLAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGG--GSAEAVVADLA   89 (273)
T ss_dssp             ---------C--TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTT--CEEEEEECCTT
T ss_pred             cccchhhccc--ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcC--CcEEEEEecCC
Confidence            3445555432  2234556899999999999999999999987  899999654 333334444321  23333211 12


Q ss_pred             cHH---hh------hCCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCC
Q 018265          107 QLE---DA------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       107 d~~---~a------l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      |.+   ++      +...|++|+.||......   .+   -...+..|+....    .+.+.+.+.. .+.||+++....
T Consensus        90 d~~~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~  168 (273)
T 3uf0_A           90 DLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIASMLS  168 (273)
T ss_dssp             CHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGG
T ss_pred             CHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchHh
Confidence            321   11      237899999999754221   12   1234555655444    4444444443 567777765432


Q ss_pred             ccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       168 ~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..            +.+..-.++.+......+-+.+|..++  +..|++.++-
T Consensus       169 ~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  207 (273)
T 3uf0_A          169 FQ------------GGRNVAAYAASKHAVVGLTRALASEWA--GRGVGVNALA  207 (273)
T ss_dssp             TS------------CCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cC------------CCCCChhHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEE
Confidence            21            233333444544444556777787764  3445544443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.52  E-value=0.00022  Score=67.63  Aligned_cols=97  Identities=21%  Similarity=0.236  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC---CCC----eEEEEeCCCcHHhhhCCCCE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---TNA----VVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~---~~~----~v~~~~~t~d~~~al~~aDi  117 (358)
                      -+|||+|||+ |.+|+.++..|...|.  +|.++|++...  +..+....   ..+    .+..   ++|+++ ++++|+
T Consensus        13 ~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~--~~~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~aDv   83 (335)
T 1z82_A           13 MEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEI--VDLINVSHTSPYVEESKITVRA---TNDLEE-IKKEDI   83 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHHSCBTTBTTCCCCSEE---ESCGGG-CCTTEE
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHhCCcccCCCCeeeEEE---eCCHHH-hcCCCE
Confidence            3689999998 9999999999999887  99999986422  12222110   000    1232   245667 899999


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                      ||++...                ..+.++++.+..  ++..+|.++|.++.
T Consensus        84 Vil~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~~  116 (335)
T 1z82_A           84 LVIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIEI  116 (335)
T ss_dssp             EEECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred             EEEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence            9998521                123344444443  67788888887653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.52  E-value=0.00023  Score=65.85  Aligned_cols=65  Identities=17%  Similarity=0.283  Sum_probs=46.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++|||+|||+ |.+|+.++..|...+.  +|.++| +.....  .+....    +.   ...+++++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~~---~~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----AV---NVETARQVTEFADIIFIMV   66 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----CB---CCSSHHHHHHTCSEEEECC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----Cc---ccCCHHHHHhcCCEEEEEC
Confidence            3579999998 9999999999998887  899999 652211  122111    11   1346778899999999985

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.52  E-value=0.00031  Score=65.28  Aligned_cols=66  Identities=15%  Similarity=0.356  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++|||+|||+ |.+|..++..|...+.  +|.++|++..  ....+.+..    +..   .++++++++++|+||++.
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~--~~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEA--NVAAVVAQG----AQA---CENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHCC----Cee---cCCHHHHHhCCCEEEEEC
Confidence            3579999998 9999999999988887  8999998642  222233221    222   346778899999999985

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.52  E-value=0.00044  Score=65.17  Aligned_cols=119  Identities=18%  Similarity=0.114  Sum_probs=68.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  113 (358)
                      ..+|.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++........+..+.. -+|   .+++++      
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999997  899999876  2222233332111112332211 122   223333      


Q ss_pred             -CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHH----HHHHHHHHHhh-----CCCeEEEEecCCC
Q 018265          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKC-----CPKAIVNLISNPV  166 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~-----~p~a~viv~tNP~  166 (358)
                       ..|+||++||......   .+   -...+..|+..    ++.+.+.+.+.     ...+.|+++|.-.
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a  154 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMA  154 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccc
Confidence             5699999999643211   11   22345555444    44444544443     1356777776544

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.52  E-value=0.00048  Score=62.66  Aligned_cols=156  Identities=12%  Similarity=0.079  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++..  .....++.... ...+..+.. -+|   .+++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998752  22222332110 112222211 122   223333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        +.|++|+.||.....   ..+   -...+..|+..    .+.+.+.+++.. .+.||+++......            
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------  149 (263)
T 3ai3_A           83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNASICAVQ------------  149 (263)
T ss_dssp             HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhcC------------
Confidence              799999999865321   112   12334555544    444444444433 46777766543211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                      +.|..-.++.+......+-+.++..++  +..|++.+
T Consensus       150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~  184 (263)
T 3ai3_A          150 PLWYEPIYNVTKAALMMFSKTLATEVI--KDNIRVNC  184 (263)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhh--hcCcEEEE
Confidence            222223344444344456667777653  33444433

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.52  E-value=0.00012  Score=68.33  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c---hhHHH---HHhcCCCCCeEEEEe--CCCcHHhhhCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTA---DISHMDTNAVVRGFL--GQQQLEDALTGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~---~g~~~---dl~~~~~~~~v~~~~--~t~d~~~al~~a  115 (358)
                      ++|||+|+||+|++|++++..|+..|.  +|++++++. .   .....   ++....  ..+....  ...++.++++++
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~--v~~v~~D~~d~~~l~~a~~~~   78 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMG--VTIIEGEMEEHEKMVSVLKQV   78 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTC
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCC--cEEEEecCCCHHHHHHHHcCC
Confidence            457899999999999999999999886  888898864 1   11111   122211  1111111  113467889999


Q ss_pred             CEEEEcCCCC
Q 018265          116 DIVIIPAGVP  125 (358)
Q Consensus       116 DiVIi~ag~~  125 (358)
                      |+||++++..
T Consensus        79 d~vi~~a~~~   88 (321)
T 3c1o_A           79 DIVISALPFP   88 (321)
T ss_dssp             SEEEECCCGG
T ss_pred             CEEEECCCcc
Confidence            9999998753

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.52  E-value=0.00038  Score=64.41  Aligned_cols=117  Identities=16%  Similarity=0.039  Sum_probs=74.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhhC---CC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ---LEDALT---GM  115 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~---~a  115 (358)
                      ..+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.....  ++.... ...+..+... +|   .+++++   ..
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~i   87 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGE--AAARTM-AGQVEVRELDLQDLSSVRRFADGVSGA   87 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCC
Confidence            34556899999999999999999999987  8999998752211  111111 1233332211 22   333344   56


Q ss_pred             CEEEEcCCCCCCC----CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          116 DIVIIPAGVPRKP----GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       116 DiVIi~ag~~~~~----g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      |++|+.||.....    .+.-...+..|+.....+++.+...-.+ .||+++..
T Consensus        88 D~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~  140 (291)
T 3rd5_A           88 DVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSM  140 (291)
T ss_dssp             EEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCG
T ss_pred             CEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeech
Confidence            9999999974322    1123345788888888888887765433 56666543

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.51  E-value=0.00081  Score=61.42  Aligned_cols=158  Identities=15%  Similarity=0.157  Sum_probs=91.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hh---hhCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---ED---ALTGMD  116 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~---al~~aD  116 (358)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++........+..+.. -+|.   ++   .+...|
T Consensus        10 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A           10 GKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            45899999999999999999999987  899999876  2222333432211122332211 1222   22   234789


Q ss_pred             EEEEcCCCCCCCC---CCH---HhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018265          117 IVIIPAGVPRKPG---MTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       117 iVIi~ag~~~~~g---~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      ++|+.||......   .+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++......            +.+..
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------~~~~~  154 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIASEAAIM------------PSQEM  154 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGTS------------CCTTC
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcchhhcc------------CCCcc
Confidence            9999999753221   122   2335666655    45555555443 456777776543221            23333


Q ss_pred             cEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      -.++.+......+-+.+|..++  +..|++..+.
T Consensus       155 ~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  186 (267)
T 3t4x_A          155 AHYSATKTMQLSLSRSLAELTT--GTNVTVNTIM  186 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEe
Confidence            3444544444557777887774  4556555554

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.51  E-value=0.00018  Score=65.69  Aligned_cols=143  Identities=16%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQ---QLEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-----  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++..     .+..+.. -+   +.+++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999987  8999998752  111222221     1221111 11   2334444     


Q ss_pred             --CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        +.|++|+.||.....   ..+   -...+..|+...    +.+.+.+++.. .+.||+++.-....            
T Consensus        79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------  145 (260)
T 1nff_A           79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLA------------  145 (260)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEeehhhcC------------
Confidence              899999999865321   112   223455665544    55566665543 46777776543211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHh
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l  207 (358)
                      +.|..-.++.+......+-+.++..+
T Consensus       146 ~~~~~~~Y~~sK~a~~~~~~~la~e~  171 (260)
T 1nff_A          146 GTVACHGYTATKFAVRGLTKSTALEL  171 (260)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            22322334444333445666677665

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.51  E-value=0.001  Score=60.81  Aligned_cols=161  Identities=16%  Similarity=0.121  Sum_probs=94.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh---
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL---  112 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al---  112 (358)
                      ..+.+++.|+||+|.+|.+++..|+..|.  ++++.|.+.   ......++....  ..+..+.. -+|   .++++   
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~   90 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQA   90 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHH
Confidence            34456899999999999999999999997  888888765   222233343321  22222211 122   22223   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 ----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 ----~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                          ...|++|+.||......   .+   -...+..|+.-...+++.+..+- ..+.||+++......           .
T Consensus        91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~  159 (270)
T 3is3_A           91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD-----------F  159 (270)
T ss_dssp             HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT-----------C
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc-----------C
Confidence                37899999999753211   12   23346677777777776666554 356777776544111           1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|..-.|+.+......+-+.+|..++  +..|++..+-
T Consensus       160 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v~  196 (270)
T 3is3_A          160 SVPKHSLYSGSKGAVDSFVRIFSKDCG--DKKITVNAVA  196 (270)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            233333455554444556777888774  4456554443

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.51  E-value=0.00017  Score=64.96  Aligned_cols=157  Identities=18%  Similarity=0.184  Sum_probs=89.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .++++      
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999876  222233343321  22322211 122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.||......   .+   -...+..|+.....+    .+.+.+. ..+.|++++.....            .
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~------------~  146 (247)
T 3lyl_A           80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSVVGS------------A  146 (247)
T ss_dssp             TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH------------H
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhhc------------c
Confidence             25799999999753221   11   223455565544444    4444433 35677777654311            1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|....++.+......+.+.+++.++  +..|++.++-
T Consensus       147 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  183 (247)
T 3lyl_A          147 GNPGQTNYCAAKAGVIGFSKSLAYEVA--SRNITVNVVA  183 (247)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEEEEEe
Confidence            344444555555444557777787774  3445544443

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.51  E-value=0.00028  Score=64.01  Aligned_cols=153  Identities=12%  Similarity=0.036  Sum_probs=84.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCC---cHHhhhC------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT------  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~------  113 (358)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++..  .....++.     ..+..+. .-+   +.+++++      
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELG-----AAVRFRNADVTNEADATAALAFAKQEF   79 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  8999998762  21222221     1111111 111   2233333      


Q ss_pred             -CCCEEEEcCCCCCCCC-------CC---HHhHHHHHHHHHHHHHHH----HHhh-----CCCeEEEEecCCCCccHHHH
Q 018265          114 -GMDIVIIPAGVPRKPG-------MT---RDDLFNINAGIVKTLCEG----IAKC-----CPKAIVNLISNPVNSTVPIA  173 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~g-------~~---r~~~~~~N~~i~~~i~~~----i~~~-----~p~a~viv~tNP~d~~t~~~  173 (358)
                       ..|++|+.||......       .+   -...+..|+.-...+++.    +.+.     ...+.||+++.....     
T Consensus        80 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~-----  154 (257)
T 3tpc_A           80 GHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF-----  154 (257)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH-----
T ss_pred             CCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----
Confidence             8999999999753211       11   223455665554444444    4332     235677777653311     


Q ss_pred             HHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          174 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       174 ~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                             .+.+..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       155 -------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  191 (257)
T 3tpc_A          155 -------DGQIGQAAYAASKGGVAALTLPAARELA--RFGIRVVTI  191 (257)
T ss_dssp             -------HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -------cCCCCCcchHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence                   1334444455554444556677777764  334544333

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.51  E-value=0.00067  Score=61.54  Aligned_cols=153  Identities=16%  Similarity=0.119  Sum_probs=82.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCC---CCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeC----CCcHHhhhC
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINP---LVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLG----QQQLEDALT  113 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~---~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~----t~d~~~al~  113 (358)
                      ...++++|.|+||+|.+|++++..|+..|   .  .|+++|++... ....++....  ..+..+..    ..+.+++++
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~   92 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVA   92 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHH
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHH
Confidence            44556789999999999999999999988   5  99999987621 1223332211  12222111    123344444


Q ss_pred             ---------CCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHHHHHHHHH----Hhh------CC----CeEEEEec
Q 018265          114 ---------GMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGI----AKC------CP----KAIVNLIS  163 (358)
Q Consensus       114 ---------~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i----~~~------~p----~a~viv~t  163 (358)
                               ..|+||++||.....+    .+   -...+..|+.....+.+.+    .+.      .+    .+.||+++
T Consensus        93 ~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~is  172 (267)
T 1sny_A           93 DIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMS  172 (267)
T ss_dssp             HHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEEC
T ss_pred             HHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEe
Confidence                     7999999999754111    11   2234455655444444444    332      11    46677776


Q ss_pred             CCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHh
Q 018265          164 NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       164 NP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l  207 (358)
                      .......         ....++.-.++.+......+...++..+
T Consensus       173 S~~~~~~---------~~~~~~~~~Y~~sK~a~~~~~~~la~e~  207 (267)
T 1sny_A          173 SILGSIQ---------GNTDGGMYAYRTSKSALNAATKSLSVDL  207 (267)
T ss_dssp             CGGGCST---------TCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccc---------CCCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            5443221         0001122234444444445566666665

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.51  E-value=0.00031  Score=66.19  Aligned_cols=70  Identities=11%  Similarity=0.192  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+|||+|||+ |.+|..++..|...|. .+|.++|++........+....    +..   .+++++++++||+||++..
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHHHhcCCEEEEecC
Confidence            4579999998 9999999999998874 4899999862011111222211    122   3467888999999999853

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.50  E-value=0.0001  Score=70.72  Aligned_cols=161  Identities=12%  Similarity=-0.032  Sum_probs=88.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHHHHhcCC--CCC-eEEEEeCC-C---cHHhhhCC--
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMD--TNA-VVRGFLGQ-Q---QLEDALTG--  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g---~~~dl~~~~--~~~-~v~~~~~t-~---d~~~al~~--  114 (358)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++....   ...++....  ... .+..+... +   ++.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            4899999999999999999999886  999999865210   001110000  001 33332221 2   33455665  


Q ss_pred             CCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhC----CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCC----PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      .|+||++|+.....  .......+..|+.....+++.+.+..    +.+.+|++|... +.... ...+......++...
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~-vyg~~-~~~~~E~~~~~~~~~  184 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSE-MFGST-PPPQSETTPFHPRSP  184 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGG-GGTTS-CSSBCTTSCCCCCSH
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHH-HhCCC-CCCCCCCCCCCCCCc
Confidence            59999999864311  11234456778888888888887654    234666664321 00000 000000011233345


Q ss_pred             EEeeeccHHHHHHHHHHHhCCCC
Q 018265          189 LGVTMLDVVRANTFVAEVLGLDP  211 (358)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~  211 (358)
                      +|.+.....++...+++.++++.
T Consensus       185 Y~~sK~~~E~~~~~~~~~~~~~~  207 (381)
T 1n7h_A          185 YAASKCAAHWYTVNYREAYGLFA  207 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEE
T ss_pred             hHHHHHHHHHHHHHHHHHhCCcE
Confidence            56665555666666666666543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.50  E-value=0.00014  Score=65.18  Aligned_cols=100  Identities=17%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIV  118 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiV  118 (358)
                      +.+++|.|+||+|++|++++..|+..| .  +|++++++...     +.... ...+..+..    ..+++++++++|+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~-----~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~v   92 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAK-----IHKPY-PTNSQIIMGDVLNHAALKQAMQGQDIV   92 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGG-----SCSSC-CTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhh-----hcccc-cCCcEEEEecCCCHHHHHHHhcCCCEE
Confidence            345689999999999999999999988 5  89999986521     11110 112222211    13456788999999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      |+++|..      ..+      ...+.+++.+++... ..||++|.
T Consensus        93 v~~a~~~------~~~------~~~~~~~~~~~~~~~-~~iV~iSS  125 (236)
T 3qvo_A           93 YANLTGE------DLD------IQANSVIAAMKACDV-KRLIFVLS  125 (236)
T ss_dssp             EEECCST------THH------HHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             EEcCCCC------chh------HHHHHHHHHHHHcCC-CEEEEEec
Confidence            9988642      111      124466777776543 35565554

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.50  E-value=0.0015  Score=60.05  Aligned_cols=159  Identities=19%  Similarity=0.253  Sum_probs=93.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC---
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT---  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~---  113 (358)
                      .+.+++.|+||+|.+|.+++..|+..|.  .+++.|.+.   ......++....  ..+..+.. -+|   .+++++   
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  104 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETV  104 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999997  889988765   222233443322  22222211 122   223333   


Q ss_pred             ----CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 ----GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 ----~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                          ..|++|+.||......   .+   -...+..|+.....+++.+..+- ..+.||+++......           ..
T Consensus       105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~-----------~~  173 (271)
T 3v2g_A          105 EALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL-----------VP  173 (271)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC-----------CC
T ss_pred             HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc-----------CC
Confidence                7899999999753221   12   23345667766666666665543 356777776543221           11


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +|..-.++.+......+-+.+|..++  +..|++..+
T Consensus       174 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  208 (271)
T 3v2g_A          174 WPGISLYSASKAALAGLTKGLARDLG--PRGITVNIV  208 (271)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            33333455554444557777888774  345554444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.50  E-value=0.00016  Score=56.88  Aligned_cols=72  Identities=29%  Similarity=0.358  Sum_probs=47.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe--CCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++||+|+|+ |.+|+.++..|...|. .+++++|++....  ..+...  ........  ...++.++++++|+||.+++
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~-~~v~~~~r~~~~~--~~~~~~--~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~   78 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSN-YSVTVADHDLAAL--AVLNRM--GVATKQVDAKDEAGLAKALGGFDAVISAAP   78 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSS-EEEEEEESCHHHH--HHHHTT--TCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCC-ceEEEEeCCHHHH--HHHHhC--CCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence            469999999 9999999999998882 2899999875221  112211  11111111  11345677899999999974

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.50  E-value=0.00094  Score=59.67  Aligned_cols=156  Identities=15%  Similarity=0.147  Sum_probs=86.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhhC--
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-QQ---LEDALT--  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~--  113 (358)
                      ++|.|+||+|.+|.+++..|+..|...     .|+++|++.  ......++...  ...+..+... +|   .+++++  
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            479999999999999999998877522     789999865  22222333321  1233332111 22   223332  


Q ss_pred             -----CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          114 -----GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       114 -----~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                           +.|+||++||......   .+   ....+..|+.....+.+.+    ++. ..+.|+++|......         
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~---------  150 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAATK---------  150 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS---------
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecchhcC---------
Confidence                 7999999999753211   11   2234555655554444444    333 356777776543221         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                         +.+..-.++.+......+...++..+.  ...+++.++
T Consensus       151 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  186 (244)
T 2bd0_A          151 ---AFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRITDV  186 (244)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             ---CCCCCchhHHHHHHHHHHHHHHHHHhh--ccCcEEEEE
Confidence               233333455544444456666676663  344544433

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.50  E-value=0.00042  Score=65.25  Aligned_cols=96  Identities=22%  Similarity=0.255  Sum_probs=62.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CCchhHHHHHhcCCC----C---CeEEEEeCCC--cHHhhhCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDT----N---AVVRGFLGQQ--QLEDALTGM  115 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~--~~~~g~~~dl~~~~~----~---~~v~~~~~t~--d~~~al~~a  115 (358)
                      |||+|||+ |.+|+.++..|...|.  ++.++|+  ++.  ....+.....    .   ..+..   ++  ++.++++++
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~   72 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTE--ILKSISAGREHPRLGVKLNGVEI---FWPEQLEKCLENA   72 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHH--HHHHHHTTCCBTTTTBCCCSEEE---ECGGGHHHHHTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHH--HHHHHHHhCcCcccCccccceEE---ecHHhHHHHHhcC
Confidence            69999998 9999999999988887  9999998  541  1222322110    0   11232   23  677889999


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      |+||++....                .+.++++.+....|+.+|+..+|.+
T Consensus        73 D~vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           73 EVVLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             SEEEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             CEEEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999985321                1233344444423577777778776

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.50  E-value=0.00018  Score=59.59  Aligned_cols=94  Identities=13%  Similarity=0.168  Sum_probs=63.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+||+|||+ |.+|..++..|...+.  ++.++|++...  ..+.++.     ..+..   ..+++++++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCC
Confidence            359999998 9999999998887775  69999987522  2222222     12222   3567888999999999876


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcc
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  169 (358)
                      .+. +-...                  ....|..+++.+++|.++-
T Consensus        90 ~~~-~~~~~------------------~~l~~g~~vid~~~p~~~~  116 (144)
T 3oj0_A           90 SKT-PIVEE------------------RSLMPGKLFIDLGNPPNIE  116 (144)
T ss_dssp             CSS-CSBCG------------------GGCCTTCEEEECCSSCSBC
T ss_pred             CCC-cEeeH------------------HHcCCCCEEEEccCCccCC
Confidence            542 11100                  1123577889999998654

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.50  E-value=0.00029  Score=63.83  Aligned_cols=113  Identities=12%  Similarity=0.104  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++.     ..+..+.. -+|   .++++      
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999998752  22222231     11222111 112   22233      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                       ...|++|+.||.....   ..+   -...+..|+.    ..+.+.+.+++..  +.||+++...
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~  140 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVS  140 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGG
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchh
Confidence             3469999999975321   112   2234556644    5556666665543  7777776543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.50  E-value=0.00013  Score=66.23  Aligned_cols=96  Identities=15%  Similarity=0.204  Sum_probs=60.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      |||+|||+ |.+|..++..|...++  ..+|.++|+++..  ..++....   .+..   ..|.++++++||+||++.  
T Consensus         3 ~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav--   71 (247)
T 3gt0_A            3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---GLTT---TTDNNEVAKNADILILSI--   71 (247)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS--
T ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe--
Confidence            69999998 9999999999998875  3589999987521  12221100   1122   346778899999999986  


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  167 (358)
                      +  +            ..+.++++.+..+. |+.+++..++.+.
T Consensus        72 ~--~------------~~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 K--P------------DLYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             C--T------------TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             C--H------------HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence            1  1            12445556666554 5666654555554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.49  E-value=0.00071  Score=62.36  Aligned_cols=161  Identities=14%  Similarity=0.046  Sum_probs=90.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hhhh---
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDAL---  112 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al---  112 (358)
                      +-.+.+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++....  ..+..+.. -+|.   ++++   
T Consensus        20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~   95 (279)
T 3sju_A           20 HMSRPQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAA   95 (279)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHH
Confidence            334456899999999999999999999987  899999876  223334444322  22332211 1222   2223   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHh-----hCCCeEEEEecCCCCccHHHHHHHH
Q 018265          113 ----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAK-----CCPKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       113 ----~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~-----~~p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                          ...|++|+.||......   .+   -...+..|+.....+++.+..     ....+.||+++......        
T Consensus        96 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~--------  167 (279)
T 3sju_A           96 VERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ--------  167 (279)
T ss_dssp             HHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS--------
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc--------
Confidence                36899999999753211   12   223456676666555555433     12356777776543221        


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                          +.+..-.++.+......+-+.+|..++  +..|++..+-
T Consensus       168 ----~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  204 (279)
T 3sju_A          168 ----GVMYAAPYTASKHGVVGFTKSVGFELA--KTGITVNAVC  204 (279)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             ----CCCCChhHHHHHHHHHHHHHHHHHHHH--hhCcEEEEEe
Confidence                233333344444444556777777764  3445544443

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.49  E-value=0.0023  Score=58.00  Aligned_cols=157  Identities=15%  Similarity=0.087  Sum_probs=90.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++...  ...+..+.. -+|   .++++      
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999987  899999875  22222334322  123332211 122   22233      


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                        ...|++|+.||.....   ..+   -...+..|+.....+++.+    ++. ..+.||+++.-....           
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~-----------  151 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGAL-----------  151 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGTS-----------
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhcc-----------
Confidence              5799999999975321   112   2234556665555554444    333 356777776543211           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.|..-.++.+......+-+.++..++  +..|++.++.
T Consensus       152 -~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  188 (260)
T 2ae2_A          152 -AVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGVG  188 (260)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             -CCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence             233333455554444556677777763  3456555554

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.49  E-value=0.00017  Score=66.90  Aligned_cols=94  Identities=17%  Similarity=0.068  Sum_probs=61.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHH---HHhcCCCCCeEEEEeC----CCcHHhhhCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTA---DISHMDTNAVVRGFLG----QQQLEDALTGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~---dl~~~~~~~~v~~~~~----t~d~~~al~~a  115 (358)
                      ++||+|+||+|++|++++..|+..|.  +|++++++..   .....   ++...    .+..+.+    ..++.++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~d~~~l~~~~~~~   77 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQL----GAKLIEASLDDHQRLVDALKQV   77 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTT----TCEEECCCSSCHHHHHHHHTTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHhC----CeEEEeCCCCCHHHHHHHHhCC
Confidence            46899999999999999999999886  8899988741   11211   22211    1121111    13467889999


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (358)
                      |+||++++.... +        .|+...+.+++.+++.+
T Consensus        78 d~vi~~a~~~~~-~--------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           78 DVVISALAGGVL-S--------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             SEEEECCCCSSS-S--------TTTTTHHHHHHHHHHSC
T ss_pred             CEEEECCccccc-h--------hhHHHHHHHHHHHHhcC
Confidence            999999875421 1        13444566777777664

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.49  E-value=0.00086  Score=60.52  Aligned_cols=155  Identities=15%  Similarity=0.135  Sum_probs=85.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al------  112 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|.   ++++      
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999987  899999875  222233343221  22222211 1222   2222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       .+.|++|+.||.....   ..+.   ...+..|+.....    +.+.+.+..  +.||+++.-....            
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~------------  147 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSIAGRV------------  147 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTC------------
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccHHhcC------------
Confidence             3799999999875321   1222   2335556554444    444444433  6777776533221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.|..-.|+.+......+.+.++..++  +..|++.++
T Consensus       148 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  183 (247)
T 2jah_A          148 NVRNAAVYQATKFGVNAFSETLRQEVT--ERGVRVVVI  183 (247)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            222222344443333446666777763  345554444

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.49  E-value=7.1e-05  Score=67.98  Aligned_cols=101  Identities=18%  Similarity=0.212  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCC--CCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTG--MDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~--aDiVIi~ag  123 (358)
                      |||.|+||+|++|++++..|+. +.  +|++++++....     .    .  +.. .....++.+++++  +|+||+++|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~-----~----~--~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ-----G----G--YKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT-----T----C--EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC-----C----C--ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            5899999999999999999984 64  899999865210     0    0  111 0011234556665  999999998


Q ss_pred             CCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       124 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      .....  .......+..|+.....+++.+.+..  +.++++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEe
Confidence            64311  12345567889999999999998754  3566654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.49  E-value=0.0014  Score=60.00  Aligned_cols=121  Identities=20%  Similarity=0.252  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CC
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTNAVVRGFLG-QQ  106 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~  106 (358)
                      ...+.+++.|+||+|.+|.+++..|+..|.  +|+++|++.              ......++...  ...+..+.. -+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~   84 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVR   84 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTT
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCC
Confidence            344556899999999999999999999997  899999862              11111222221  122322211 12


Q ss_pred             c---HHhhhC-------CCCEEEEcCCCCCCCC--CCHHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          107 Q---LEDALT-------GMDIVIIPAGVPRKPG--MTRDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       107 d---~~~al~-------~aDiVIi~ag~~~~~g--~~r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      |   .+++++       ..|++|+.||......  +.-...+..|+.    +.+.+.+.+.+....+.||+++.-.
T Consensus        85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  160 (278)
T 3sx2_A           85 DRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSA  160 (278)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Confidence            2   223333       7899999999753221  112234555654    4444555555555567788876543

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.49  E-value=0.00064  Score=61.67  Aligned_cols=154  Identities=15%  Similarity=0.126  Sum_probs=86.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-HHHHhcCCCCCeEEEEeCCCc---HHhhh-------C
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLGQQQ---LEDAL-------T  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d---~~~al-------~  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++..... ..++..     ..... .-+|   .++++       .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~-D~~~~~~~~~~~~~~~~~~g   76 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGG-----AFFQV-DLEDERERVRFVEEAAYALG   76 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTC-----EEEEC-CTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhC-----CEEEe-eCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999987  8999998763211 122210     11000 1112   22222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      ..|++|+.||.....   ..+   -...+..|+.....+++.+..+   ...+.||+++.-....            +.|
T Consensus        77 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------~~~  144 (256)
T 2d1y_A           77 RVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF------------AEQ  144 (256)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS------------BCT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC------------CCC
Confidence            789999999865321   112   2344566766555555444322   2346777776543221            223


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..-.++.+......+-+.++..++  +..|++.++.
T Consensus       145 ~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  178 (256)
T 2d1y_A          145 ENAAYNASKGGLVNLTRSLALDLA--PLRIRVNAVA  178 (256)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHh--hcCeEEEEEe
Confidence            333344444444456677777764  3455555554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.48  E-value=0.00028  Score=65.50  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=48.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||+|||+ |.+|..++..|...+.  ++.++|++...  ...+....    +..   +.+++++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEA--IADVIAAG----AET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            69999998 9999999999998887  89999987521  12222211    122   3567788999999999853

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.48  E-value=0.00075  Score=62.11  Aligned_cols=155  Identities=16%  Similarity=0.113  Sum_probs=84.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhCC------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDALTG------  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~~------  114 (358)
                      +++.|+||+|.+|..++..|+..|.  +|+++|++.  ......++...   ..+..+.. -+   +.+++++.      
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4899999999999999999999987  899999875  22222333321   12222211 12   23344444      


Q ss_pred             -CCEEEEcCCCCCC--C--CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          115 -MDIVIIPAGVPRK--P--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       115 -aDiVIi~ag~~~~--~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       .|++|+.||....  +  ..+   -...+..|+..    .+.+.+.+.+......||+++.-....            +
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~------------~  164 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW------------P  164 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS------------C
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc------------C
Confidence             4999999997532  1  111   12334555544    555566665554332677766433211            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.|+.+......+-+.++..+  .+..|++.++-
T Consensus       165 ~~~~~~Y~asKaa~~~l~~~la~el--~~~gIrvn~v~  200 (272)
T 2nwq_A          165 YPGSHVYGGTKAFVEQFSLNLRCDL--QGTGVRVTNLE  200 (272)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHTTC--TTSCCEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHh--CccCeEEEEEE
Confidence            2222233343333334555565554  34556554443

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.48  E-value=0.00038  Score=64.46  Aligned_cols=149  Identities=13%  Similarity=0.029  Sum_probs=83.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-QQ---LEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~----  113 (358)
                      .+.++|.|+||+|++|++++..|+..|.  +|+++|++.  ......++.... ...+..+... +|   .+++++    
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK  100 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999987  899999875  222222332210 1122222111 22   223333    


Q ss_pred             ---CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 ---GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                         ..|+||++||.....   ..+   ....+..|+.....+.+.+    .+....+.+++++.-..           . 
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~-----------~-  168 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYA-----------E-  168 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHH-----------H-
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccc-----------c-
Confidence               459999999864321   111   2334556665555554444    32334567777655321           0 


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHh
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l  207 (358)
                      .+.+..-.++.+......+-+.++..+
T Consensus       169 ~~~~~~~~Y~~sK~a~~~~~~~la~~~  195 (302)
T 1w6u_A          169 TGSGFVVPSASAKAGVEAMSKSLAAEW  195 (302)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence            123333445555444455667777775

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.47  E-value=0.00039  Score=62.20  Aligned_cols=156  Identities=17%  Similarity=0.135  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCC---cHHhhhC---CCCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ---QLEDALT---GMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~---d~~~al~---~aDiV  118 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|++....... ..+.. ...+... .-+   +.+++++   ..|+|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~id~v   80 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSL-VRECP-GIEPVCV-DLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHH-HHHST-TCEEEEC-CTTCHHHHHHHHTTCCCCCEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHHcC-CCCEEEE-eCCCHHHHHHHHHHcCCCCEE
Confidence            345899999999999999999999987  899999865211111 01111 1111111 112   2333443   57999


Q ss_pred             EEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          119 IIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       119 Ii~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      |+.+|......   .+   ....+..|+.....+.+.+    .+....+.|++++......            +.+....
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~~~~~  148 (244)
T 3d3w_A           81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------AVTNHSV  148 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBHH
T ss_pred             EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc------------CCCCCch
Confidence            99998653211   11   2334566666544444444    3333256777776543221            2333344


Q ss_pred             EEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ++.+......+-+.+++.++  +..+++.++
T Consensus       149 Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v  177 (244)
T 3d3w_A          149 YCSTKGALDMLTKVMALELG--PHKIRVNAV  177 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            55555455566677777763  334544443

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.47  E-value=0.00038  Score=67.96  Aligned_cols=114  Identities=12%  Similarity=0.090  Sum_probs=70.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-----HHHHHhcC-------CCCCeEEEEeCC----Cc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHM-------DTNAVVRGFLGQ----QQ  107 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-----~~~dl~~~-------~~~~~v~~~~~t----~d  107 (358)
                      .++++|.|+||+|++|++++..|...+.  +|++++++....     ....+...       .....+..+.+.    .+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            4467999999999999999999977766  899998876211     11111110       001122222111    12


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +. ++.++|+||++|+.... ..........|+.....+++.+.+ . ...++++|
T Consensus       145 l~-~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~S  196 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS  196 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEE
T ss_pred             CC-CcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEC
Confidence            22 57899999999986532 233455678899999999999988 3 34555543

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.47  E-value=8.8e-05  Score=64.65  Aligned_cols=141  Identities=11%  Similarity=0.060  Sum_probs=83.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcHHhhhC---CCCEEEEc
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALT---GMDIVIIP  121 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~---~aDiVIi~  121 (358)
                      ++|.|+||+|++|++++..|+..    +|+++|++..  .....++.......++.   ...+++++++   +.|+||++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLA---DELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTT---SHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCC---CHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999999876    8999998652  11112221100001110   1123445555   89999999


Q ss_pred             CCCCCCC------CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeecc
Q 018265          122 AGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (358)
Q Consensus       122 ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~ld  195 (358)
                      +|.....      .......+..|+.....+.+.+.+. +.+.+++++.....            .+.++...++.+...
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~~~~------------~~~~~~~~Y~~sK~a  140 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAYPRY------------VQVPGFAAYAAAKGA  140 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCCHHH------------HSSTTBHHHHHHHHH
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcChhhc------------cCCCCcchHHHHHHH
Confidence            9865321      1223456678888888888888433 34567776654210            123333445554444


Q ss_pred             HHHHHHHHHHHh
Q 018265          196 VVRANTFVAEVL  207 (358)
Q Consensus       196 s~R~~~~lA~~l  207 (358)
                      ...+-..+++.+
T Consensus       141 ~~~~~~~~~~~~  152 (207)
T 2yut_A          141 LEAYLEAARKEL  152 (207)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            445566666665

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.47  E-value=0.0013  Score=59.08  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeE-EEEeC-CCc---HHhhh----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVV-RGFLG-QQQ---LEDAL----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v-~~~~~-t~d---~~~al----  112 (358)
                      .+.++|.|+||+|.+|++++..|+..|.  +|+++|++..  .....++.     ..+ ..+.. -+|   .++++    
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~   81 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEAE   81 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHHH
Confidence            3446899999999999999999999987  8999998752  22222221     111 11111 122   22222    


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCC
Q 018265          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                        .+.|+||+.||.....   ..+   -...+..|+..    .+.+.+.+++.. .+.|++++...
T Consensus        82 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~  146 (254)
T 2wsb_A           82 AVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSMS  146 (254)
T ss_dssp             HHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGG
T ss_pred             hhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEecch
Confidence              4789999999875321   111   23345566555    445555555443 46677766543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.46  E-value=0.00032  Score=63.00  Aligned_cols=152  Identities=11%  Similarity=0.041  Sum_probs=84.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  112 (358)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++..     .+..+.. -+|   .++++       
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999987  899999876  2222223321     1222111 122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      ...|++|+.||.....   ..+   -...+..|+.....+++.+...-  ..+.|++++.-....            +.|
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~------------~~~  143 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV------------GKA  143 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS------------SCS
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC------------CCC
Confidence            3679999999974321   112   23345667666655555443321  234677665543222            122


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                      ..-.++.+......+-+.++..++  +..|++..
T Consensus       144 ~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~  175 (235)
T 3l6e_A          144 NESLYCASKWGMRGFLESLRAELK--DSPLRLVN  175 (235)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTT--TSSEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhh--ccCCEEEE
Confidence            222344444344456777787764  44454433

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.46  E-value=0.00089  Score=60.48  Aligned_cols=156  Identities=16%  Similarity=0.160  Sum_probs=90.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCcHHhhh-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDAL-----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al-----  112 (358)
                      .+.+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++.     ..+..+..    ..+.++++     
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~   76 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQA   76 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999997  899999876  222222231     11111100    11222333     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                        ...|++|+.||......   .+   -...+..|+..    .+.+.+.+++..+.+.|++++.-...            
T Consensus        77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------  144 (247)
T 3rwb_A           77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFF------------  144 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH------------
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhc------------
Confidence              37899999999753221   12   22345556554    44445557666556778877653211            


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+.|..-.|+.+......+-+.+|..++  +..|++..+-
T Consensus       145 ~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v~  182 (247)
T 3rwb_A          145 AGTPNMAAYVAAKGGVIGFTRALATELG--KYNITANAVT  182 (247)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEEe
Confidence            1334444455554444557777888774  3445544443

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.46  E-value=0.0019  Score=58.21  Aligned_cols=155  Identities=18%  Similarity=0.181  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC-CCc---HHhh-------h
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------L  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++. .... .++....  ..+..+.. -+|   .+++       +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAE-AAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF   80 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHH-HHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHH-HHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            445899999999999999999999987  899999876 2221 1333221  22222211 122   2222       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ...|++|+.||.....   ..+   -...+..|+..    .+.+.+.+++.. .+.||+++......            +
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~  147 (249)
T 2ew8_A           81 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWL------------K  147 (249)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGS------------C
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhcc------------C
Confidence            4789999999875321   112   22345566655    445555565543 46777776543211            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .|..-.++.+......+-+.++..++  +..|++.++
T Consensus       148 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  182 (249)
T 2ew8_A          148 IEAYTHYISTKAANIGFTRALASDLG--KDGITVNAI  182 (249)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHH--hcCcEEEEE
Confidence            23333344444444556677777763  334544443

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.45  E-value=0.00021  Score=65.93  Aligned_cols=154  Identities=10%  Similarity=0.011  Sum_probs=88.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCC---cHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQ---QLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al------  112 (358)
                      ....+.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++..     .+..+. .-+   +.++++      
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~   99 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD-----DALCVPTDVTDPDSVRALFTATVEK   99 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS-----CCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----CeEEEEecCCCHHHHHHHHHHHHHH
Confidence            345788999999999999999999997  899999875  2222233321     111111 111   222333      


Q ss_pred             -CCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHH----HHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHH
Q 018265          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                       ...|++|..||.....+    .+   -...+..|+..    .+.+.+.+.+..+ .+.||+++.-....          
T Consensus       100 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~----------  169 (272)
T 4dyv_A          100 FGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS----------  169 (272)
T ss_dssp             HSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS----------
T ss_pred             cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC----------
Confidence             38999999999743211    12   12345556554    5555666655442 57788876544322          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                        +.+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       170 --~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  205 (272)
T 4dyv_A          170 --PRPYSAPYTATKHAITGLTKSTSLDGR--VHDIACGQI  205 (272)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             --CCCCchHHHHHHHHHHHHHHHHHHHhC--ccCEEEEEE
Confidence              233333455554444556777777764  344544433

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.45  E-value=0.00058  Score=63.78  Aligned_cols=76  Identities=16%  Similarity=0.291  Sum_probs=55.4

Q ss_pred             CEEEEEc-CCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiG-a~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      +||+||| + |.+|..++..|...|.  ++.++|++..                      .+..+++++||+||++....
T Consensus        22 ~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~----------------------~~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A           22 HKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDW----------------------AVAESILANADVVIVSVPIN   76 (298)
T ss_dssp             CCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCG----------------------GGHHHHHTTCSEEEECSCGG
T ss_pred             CEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCcc----------------------cCHHHHhcCCCEEEEeCCHH
Confidence            4899999 7 9999999999998887  8999997642                      13467889999999985211


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  163 (358)
                                      .+.++++.+..+. |+++|+.++
T Consensus        77 ----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           77 ----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             ----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             ----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence                            1445555665544 567666543

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.45  E-value=0.00078  Score=67.25  Aligned_cols=101  Identities=11%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC---CCEEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVII  120 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi  120 (358)
                      |.++||+|||+ |.+|..++..|...|.  +|.++|++...  +.++........+..   ++|+++++++   +|+||+
T Consensus         3 m~~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            3 MAQANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             CTTBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEE
Confidence            44579999998 9999999999999887  89999986521  112221100112332   3567777766   999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  167 (358)
                      +...+               ..+.++++.+..+. |+.+||..+|-..
T Consensus        75 avp~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~~  107 (474)
T 2iz1_A           75 MVQAG---------------AATDATIKSLLPLLDIGDILIDGGNTHF  107 (474)
T ss_dssp             CCCTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             EccCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence            85321               12334445555554 5677777777653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.45  E-value=0.00026  Score=64.44  Aligned_cols=160  Identities=18%  Similarity=0.153  Sum_probs=91.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC---
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDALT---  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~---  113 (358)
                      .+.++|.|+||+|++|++++..|+..|.  +++++|. +.  ......++....  ..+..+.. -+   +++++++   
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~   94 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAV   94 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            4456899999999999999999999987  8999988 33  222223343221  22222211 12   2333444   


Q ss_pred             ----CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 ----GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 ----~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                          +.|+||+.+|.....   ..+   -...+..|+.....+.+.+..+. ..+.||+++......           .+
T Consensus        95 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~-----------~~  163 (274)
T 1ja9_A           95 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM-----------TG  163 (274)
T ss_dssp             HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC-----------CS
T ss_pred             HHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhcc-----------CC
Confidence                789999999875321   111   23456677777777777666553 125677766443220           12


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+..-.++.+......+-..+++.++  +..+++.++.
T Consensus       164 ~~~~~~Y~~sK~a~~~~~~~~~~e~~--~~gi~v~~v~  199 (274)
T 1ja9_A          164 IPNHALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCIA  199 (274)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEEEEEe
Confidence            23333344444444556667777764  2345444443

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.45  E-value=0.00039  Score=72.03  Aligned_cols=169  Identities=14%  Similarity=0.063  Sum_probs=98.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc----HHhhhCCCCE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ----LEDALTGMDI  117 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~al~~aDi  117 (358)
                      .++|+|.|+||+|++|++++..|+.. +.  +|+++|++....  .++..   ...+..+.+. +|    ++++++++|+
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~  385 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDV  385 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCE
Confidence            35679999999999999999999887 66  899999865211  11111   1223322111 12    3456789999


Q ss_pred             EEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC-------CCCCcE
Q 018265          118 VIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT-------YDPKRL  188 (358)
Q Consensus       118 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~-------~p~~kv  188 (358)
                      ||++|+.....  .....+.+..|+.....+++.+.+..  ..++++|... +....-...+.....       .++...
T Consensus       386 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS~~-vyg~~~~~~~~E~~~~~~~~p~~~p~~~  462 (660)
T 1z7e_A          386 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSE-VYGMCSDKYFDEDHSNLIVGPVNKPRWI  462 (660)
T ss_dssp             EEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGG-GGBTCCSSSBCTTTCCEEECCTTCTTHH
T ss_pred             EEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEecHH-HcCCCCCcccCCCccccccCcccCCCCC
Confidence            99999865321  12334566788888999999998875  5666655421 100000000000000       011224


Q ss_pred             EEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          189 LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      +|.+.....++...+++..|++..-++ ..++|..
T Consensus       463 Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~  497 (660)
T 1z7e_A          463 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPR  497 (660)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTT
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCC
Confidence            555555556666666677777666664 4577754

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.44  E-value=0.0018  Score=59.58  Aligned_cols=158  Identities=18%  Similarity=0.147  Sum_probs=89.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------------------chhHHHHHhcCCCCCeEEEEeC-C
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------------------TPGVTADISHMDTNAVVRGFLG-Q  105 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~------------------~~g~~~dl~~~~~~~~v~~~~~-t  105 (358)
                      +.+.+.|+||+|.+|.+++..|+..|.  .|+++|++.                  ......++...  ...+..+.. -
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv   85 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDV   85 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCC
Confidence            345899999999999999999999997  899999862                  11111222222  123332211 1


Q ss_pred             Cc---HHhhh-------CCCCEEEEcCCCCCCCC----CCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecC
Q 018265          106 QQ---LEDAL-------TGMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       106 ~d---~~~al-------~~aDiVIi~ag~~~~~g----~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +|   .++++       ...|++|+.||......    .+.   ...+..|+.    +.+.+.+.+.+....+.||+++.
T Consensus        86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (286)
T 3uve_A           86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS  165 (286)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            22   22222       37899999999754322    121   234455554    44445555555555677888765


Q ss_pred             CCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       165 P~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      -....            +.|..-.|+.+......+-+.+|..++  +..|++..+-
T Consensus       166 ~~~~~------------~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~vn~v~  207 (286)
T 3uve_A          166 VGGLK------------AYPHTGHYVAAKHGVVGLMRAFGVELG--QHMIRVNSVH  207 (286)
T ss_dssp             GGGTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             hhhcc------------CCCCccHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            43222            233333344444334456677777764  3445544443

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.43  E-value=0.00068  Score=61.74  Aligned_cols=157  Identities=14%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             CCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCc---HHhhhC------
Q 018265           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQ---LEDALT------  113 (358)
Q Consensus        46 ~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al~------  113 (358)
                      .++|.|+||+  |.+|.+++..|+..|.  +|+++|++. ......++............ .-+|   .+++++      
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~~   85 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQC-DVAEDASIDTMFAELGKVW   85 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEEc-cCCCHHHHHHHHHHHHHHc
Confidence            4579999998  8999999999999987  899999875 22222333221001111111 1122   223333      


Q ss_pred             -CCCEEEEcCCCCCC-----C--C-CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 -GMDIVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 -~aDiVIi~ag~~~~-----~--g-~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       ..|++|+.||....     +  . .+   -...+..|+.....+++.+..+- +.+.||+++......           
T Consensus        86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------  154 (265)
T 1qsg_A           86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-----------  154 (265)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred             CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc-----------
Confidence             67999999997542     1  1 12   23456778888888888776653 246777776532211           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.|..-.|+.+......+-+.++..++  +..|++.++
T Consensus       155 -~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  190 (265)
T 1qsg_A          155 -AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  190 (265)
T ss_dssp             -BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence             233333455555445566777887774  345554443

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.42  E-value=0.00093  Score=60.30  Aligned_cols=160  Identities=14%  Similarity=0.085  Sum_probs=89.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC-
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-  113 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-  113 (358)
                      ...+..+|.|+||+|.+|.+++..|+..|.  .+++.|. +.  ......++....  ..+..+. .-+|   .+++++ 
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~   84 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALG--FDFYASEGNVGDWDSTKQAFDK   84 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeeEEEecCCCCHHHHHHHHHH
Confidence            455667999999999999999999999987  8888884 33  222233333221  1222211 1122   223333 


Q ss_pred             ------CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHH
Q 018265          114 ------GMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       114 ------~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                            ..|++|+.||.....   ..+   -...+..|+..    .+.+.+.+.+.. .+.|++++......        
T Consensus        85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--------  155 (256)
T 3ezl_A           85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQK--------  155 (256)
T ss_dssp             HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCGGG--------
T ss_pred             HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhcc--------
Confidence                  679999999875321   122   22345566555    455555555543 46777777654322        


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                          +.+..-.++.+......+.+.++..+.  +..|++.++.
T Consensus       156 ----~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v~  192 (256)
T 3ezl_A          156 ----GQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVTVNTVS  192 (256)
T ss_dssp             ----SCSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ----CCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCEEEEEE
Confidence                233334455554444556777777764  3445544443

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.42  E-value=0.00068  Score=61.63  Aligned_cols=155  Identities=17%  Similarity=0.192  Sum_probs=92.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCcH---H-------hh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~---~-------~a  111 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++.     ..+..+. .-+|.   +       +.
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  8999998752  22222221     1122211 11222   1       22


Q ss_pred             hCCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      +...|++|+.||......   .+   -...+..|+.-...+++.+..+- ..+.|++++......            +.|
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~  147 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG------------GHP  147 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS------------BCT
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC------------CCC
Confidence            347899999999754221   12   23456778777777777776543 356777776544222            233


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..-.++.+......+-+.+|..++  +..|++..+-
T Consensus       148 ~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v~  181 (255)
T 4eso_A          148 GMSVYSASKAALVSFASVLAAELL--PRGIRVNSVS  181 (255)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEEe
Confidence            333445544444556777887763  3455554443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.42  E-value=0.00035  Score=56.85  Aligned_cols=100  Identities=12%  Similarity=0.057  Sum_probs=58.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCc---HHhh-hCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi~  121 (358)
                      +.||+|+|+ |.+|+.++..|...+.  +++++|.+..  ....+...  ...... ...+|   ++++ +.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~--~~~~~~~~--~~~~~~-~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASY--ATHAVI-ANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHTTTTT--CSEEEE-CCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHh--CCEEEE-eCCCCHHHHHhcCCCCCCEEEEC
Confidence            347999998 9999999999998886  8899998641  11112211  111111 11122   2232 6789999998


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      .+.+          ...|..    ++..+++.+|+.++...+||.+
T Consensus        78 ~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~~  109 (144)
T 2hmt_A           78 IGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYYH  109 (144)
T ss_dssp             CCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHHH
T ss_pred             CCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHHH
Confidence            7642          122332    3444455667644444456653

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.42  E-value=0.001  Score=60.94  Aligned_cols=156  Identities=14%  Similarity=0.112  Sum_probs=90.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  112 (358)
                      ..+.|+||+|.+|.+++..|+..|.  .+++.+.+.   ......++....  ..+..+. .-+|   .++++       
T Consensus        28 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999987  888876544   222233333321  1222211 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      ...|++|+.||......   .+   -...+..|+.....+++.+..+- ..+.||+++.....          .  +.|.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~----------~--~~~~  171 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVG----------L--LHPS  171 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHH----------H--CCTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhc----------c--CCCC
Confidence            37899999999753211   11   22345677776666666555432 34677777653210          1  2343


Q ss_pred             CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .-.++.+......+-+.+|..++  +..|++..+-
T Consensus       172 ~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  204 (267)
T 3u5t_A          172 YGIYAAAKAGVEAMTHVLSKELR--GRDITVNAVA  204 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEEE
Confidence            34455555555567788888875  4556554444

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.42  E-value=0.00047  Score=63.59  Aligned_cols=154  Identities=14%  Similarity=0.124  Sum_probs=87.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCC---cHHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al------  112 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  .|+++|++..  .....++.     ..+..+. .-+   +.++++      
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKTTAK   98 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998752  22222221     1111111 111   222223      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.||.....   ..+   -...+..|+.-...+.+.    +++. ..+.||+++......            
T Consensus        99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------  165 (277)
T 4dqx_A           99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN-GGGSIINTTSYTATS------------  165 (277)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECchhhCc------------
Confidence             3789999999964321   112   223455666554444444    4432 356777776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.++.+......+-+.+|..++  +..|++.++-
T Consensus       166 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  202 (277)
T 4dqx_A          166 AIADRTAYVASKGAISSLTRAMAMDHA--KEGIRVNAVA  202 (277)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEEe
Confidence            233333445544444556777777774  3445554444

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.42  E-value=0.0016  Score=59.82  Aligned_cols=159  Identities=17%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeC-CCc---HHhhh------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~-t~d---~~~al------  112 (358)
                      .++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++..... ...+..+.. -+|   .++++      
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999987  899999876  2333444543321 113333221 122   22233      


Q ss_pred             -CCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.||.....+    .+   -...+..|+.....+++.+..+   ...+.||+++....            ..
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~------------~~  156 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAA------------SN  156 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHH------------HS
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHH------------cC
Confidence             26799999998632211    12   1234556765554444443322   34567777764221            11


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.|+.+......+-+.+|..++  +..|++.++.
T Consensus       157 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v~  193 (281)
T 3svt_A          157 THRWFGAYGVTKSAVDHLMQLAADELG--ASWVRVNSIR  193 (281)
T ss_dssp             CCTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEEE
Confidence            334444555655555567788888875  3445554443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.41  E-value=0.00025  Score=63.14  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      .+|||+|||+ |.+|+.++..|...+.  ++.++|++..  ...++.+.    .+...    +++++++++|+||++...
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~--~~~~~~~~----g~~~~----~~~~~~~~~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPK--RTARLFPS----AAQVT----FQEEAVSSPEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHH--HHHHHSBT----TSEEE----EHHHHTTSCSEEEECSCG
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHc----CCcee----cHHHHHhCCCEEEECCCh
Confidence            3579999997 9999999999998887  8999998642  22223322    12221    467889999999998641


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                          ... .+.       + +    +....++.+++.++|+...
T Consensus        94 ----~~~-~~v-------~-~----l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           94 ----EHY-SSL-------C-S----LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             ----GGS-GGG-------G-G----GHHHHTTCEEEECCCCCHH
T ss_pred             ----HHH-HHH-------H-H----HHHhcCCCEEEEeCCCccc
Confidence                111 111       1 1    2222267888888998754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.41  E-value=0.00032  Score=65.83  Aligned_cols=93  Identities=15%  Similarity=0.100  Sum_probs=61.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      .|||+|||+ |.+|+.++..|...+.  +|.++|++.....  .+....    +..   ..+++++++++|+||++...+
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~~---~~~~~~~~~~~DvVi~av~~~   97 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG----ARL---GRTPAEVVSTCDITFACVSDP   97 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT----CEE---CSCHHHHHHHCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC----CEE---cCCHHHHHhcCCEEEEeCCCH
Confidence            479999998 9999999999998887  8999998762221  122211    121   246678889999999985321


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNP  165 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  165 (358)
                                     ..++++...+    ....|+..|+..+|-
T Consensus        98 ---------------~~~~~v~~~~~~~~~~l~~~~~vv~~s~~  126 (316)
T 2uyy_A           98 ---------------KAAKDLVLGPSGVLQGIRPGKCYVDMSTV  126 (316)
T ss_dssp             ---------------HHHHHHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred             ---------------HHHHHHHcCchhHhhcCCCCCEEEECCCC
Confidence                           1223344332    223467777777774

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.41  E-value=0.0013  Score=62.83  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-----CcHHhhhCCCCEEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDIVII  120 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~al~~aDiVIi  120 (358)
                      ++||.|+||+|++|++++..|+..+.  +|+.++++.......++...   ..+..+.+.     .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhc---CCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            56899999999999999999998886  88999887632222333321   122222111     235677899999998


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      .++...   .      ..|... +.+++.+++...-..+|++|..
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCSEEEEEECC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCccEEEEeCCc
Confidence            765321   1      124444 7778877776512355666544

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.40  E-value=0.0011  Score=66.38  Aligned_cols=100  Identities=17%  Similarity=0.181  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC-CCCCeEEEEeCCCcHHhhhC---CCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDALT---GMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~-~~~~~v~~~~~t~d~~~al~---~aDiVIi  120 (358)
                      .+|||+|||. |.+|.+++..|+..|+  +|.++|++...  +.++... .....+..   +.+++++++   ++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            4679999998 9999999999999997  99999997622  2222221 11122322   345666665   6999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  167 (358)
                      +...+               +.+.++++.+..+- |+.+||..+|-..
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~~  107 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSEY  107 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCCc
Confidence            85321               12334445555554 6777777776553

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.40  E-value=0.00042  Score=63.44  Aligned_cols=150  Identities=13%  Similarity=0.117  Sum_probs=83.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQ---QLEDALT----  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~----  113 (358)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|+++|++..  ......+....  ..+..+.. -+   +.+++++    
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~  107 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQEK  107 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHHH
Confidence            3445899999999999999999999887  8999998762  21222222111  12222211 12   2333333    


Q ss_pred             ---CCCEEEEcCCCCCC--C---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          114 ---GMDIVIIPAGVPRK--P---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~--~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                         ..|+||+.+|....  +   ..+   -...+..|+..    .+.+.+.+++.. .+.||++|........       
T Consensus       108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~-------  179 (279)
T 3ctm_A          108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSISGKIVN-------  179 (279)
T ss_dssp             HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCCTTSCC--------
T ss_pred             HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECchHhccCC-------
Confidence               48999999986432  1   111   12344556555    567777776653 4566666654322210       


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhC
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                         ..+..-.++.+......+-..++..++
T Consensus       180 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~  206 (279)
T 3ctm_A          180 ---IPQLQAPYNTAKAACTHLAKSLAIEWA  206 (279)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---CCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence               012222344444444556677777775

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.39  E-value=0.0011  Score=60.52  Aligned_cols=69  Identities=12%  Similarity=0.025  Sum_probs=48.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCcHHhhhCCCCEEEEcCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~~~al~~aDiVIi~ag~  124 (358)
                      +|||.|+|| |++|++++..|+..|.  +|+.++++....  ..+...    .+..+.. -+|++  ++++|+||++++.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~----~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQM--EAIRAS----GAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGH--HHHHHT----TEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhh--hhHhhC----CCeEEEecccccc--cCCCCEEEECCCc
Confidence            369999998 9999999999999887  999999865221  112221    1222211 23443  8899999999875


Q ss_pred             C
Q 018265          125 P  125 (358)
Q Consensus       125 ~  125 (358)
                      .
T Consensus        74 ~   74 (286)
T 3ius_A           74 D   74 (286)
T ss_dssp             B
T ss_pred             c
Confidence            4

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.39  E-value=0.002  Score=58.89  Aligned_cols=158  Identities=14%  Similarity=0.138  Sum_probs=85.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|   .++++      
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  222223331100 112222111 122   22233      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCC-CccHHHHHHHHHHh
Q 018265          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPV-NSTVPIAAEVFKKV  180 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~-d~~t~~~~~~~~~~  180 (358)
                       ...|++|+.||......   .+   -...+..|+.....+++.    +++. ..+.||+++.-. ...           
T Consensus        97 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~-----------  164 (267)
T 1vl8_A           97 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIGSLTVEEV-----------  164 (267)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEECCGGGTCC-----------
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECCcchhcc-----------
Confidence             37899999999754221   12   123455666555444444    4332 345677766533 221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.+..-.|+.+......+-+.++..++  +..|++.++-
T Consensus       165 -~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v~  201 (267)
T 1vl8_A          165 -TMPNISAYAASKGGVASLTKALAKEWG--RYGIRVNVIA  201 (267)
T ss_dssp             -CSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -CCCCChhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence             122222344444344456677777763  3445554443

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.39  E-value=0.0013  Score=60.54  Aligned_cols=158  Identities=19%  Similarity=0.128  Sum_probs=90.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeC-CCc---HHhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDA------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a------  111 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+..   .....++....  ..+..+.. -+|   .+++      
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~  103 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK  103 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998762   11223333221  12222211 122   2222      


Q ss_pred             -hCCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          112 -LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       112 -l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                       +...|++|+.||......   .+   -...+..|+.....+++.+..+ ...+.||+++.-....            +.
T Consensus       104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~~  171 (283)
T 1g0o_A          104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA------------KA  171 (283)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC------------SS
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhcc------------CC
Confidence             247899999999753211   12   2345677887777777777665 2456777776432111            11


Q ss_pred             CC-CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DP-KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~-~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ++ .-.|+.+......+-+.++..++  +..|++.++-
T Consensus       172 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v~  207 (283)
T 1g0o_A          172 VPKHAVYSGSKGAIETFARCMAIDMA--DKKITVNVVA  207 (283)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            11 22344443334456666777663  3445544443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.39  E-value=0.00054  Score=63.04  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=58.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||+|||+ |.+|..++..|.. +.  ++.++|++.....  .+....    +...   + ++++++++|+||++...+ 
T Consensus         2 ~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~-   66 (289)
T 2cvz_A            2 EKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEF----GSEA---V-PLERVAEARVIFTCLPTT-   66 (289)
T ss_dssp             CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHH----CCEE---C-CGGGGGGCSEEEECCSSH-
T ss_pred             CeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh-
Confidence            68999998 9999999999988 76  8999998762211  111111    1111   1 457789999999985321 


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  166 (358)
                                    ..+.++++.+.... |+.+|+..+|..
T Consensus        67 --------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 --------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             --------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          11233445555443 577777777754

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.39  E-value=0.0018  Score=59.38  Aligned_cols=156  Identities=16%  Similarity=0.137  Sum_probs=87.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CCc--
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTNAVVRGFLG-QQQ--  107 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~d--  107 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  .|+++|+++              .......+....  ..+..+.. -+|  
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~   84 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRA   84 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            445899999999999999999999997  899999862              111112222221  22222211 122  


Q ss_pred             -HHhhh-------CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCcc
Q 018265          108 -LEDAL-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNST  169 (358)
Q Consensus       108 -~~~al-------~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~  169 (358)
                       .++++       ...|++|+.||.....   ..+   -...+..|+.-...+++.    +.+. ..+.||+++......
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~  163 (281)
T 3s55_A           85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR-NYGRIVTVSSMLGHS  163 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGGS
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECChhhcC
Confidence             22333       3799999999975321   122   223455666554444444    4443 356777776543221


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          170 VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       170 t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                                  +.+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       164 ------------~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v  199 (281)
T 3s55_A          164 ------------ANFAQASYVSSKWGVIGLTKCAAHDLV--GYGITVNAV  199 (281)
T ss_dssp             ------------CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             ------------CCCCCchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence                        233333444444444556777777764  344544433

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.38  E-value=0.00022  Score=65.10  Aligned_cols=100  Identities=13%  Similarity=0.157  Sum_probs=60.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      ||.|+||+|++|++++..|+..  +.  +|+.++++.....  ++..... ..+.. .....++.++++++|+||++++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~~-~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQGI-TVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTTC-EEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCCC-eEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            5899999999999999999887  65  8899998752211  1211110 01111 00113456788999999999875


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ..          ..|+...+.+++.+++.... .++++|
T Consensus        76 ~~----------~~~~~~~~~l~~a~~~~~~~-~~v~~S  103 (286)
T 2zcu_A           76 EV----------GQRAPQHRNVINAAKAAGVK-FIAYTS  103 (286)
T ss_dssp             ----------------CHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             Cc----------hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            31          13667778888888876533 444443

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.38  E-value=0.00072  Score=61.23  Aligned_cols=151  Identities=9%  Similarity=0.017  Sum_probs=84.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCcHHhhh-------CCCCEEE
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDAL-------TGMDIVI  119 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al-------~~aDiVI  119 (358)
                      +|.|+||+|.+|.+++..|+..|.  +|+++|++... ....++....  ..+..+ ...+.++++       ...|++|
T Consensus         3 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~-d~~~v~~~~~~~~~~~g~iD~lv   77 (254)
T 1zmt_A            3 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETY--PQLKPM-SEQEPAELIEAVTSAYGQVDVLV   77 (254)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHC--TTSEEC-CCCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC--CcEEEE-CHHHHHHHHHHHHHHhCCCCEEE
Confidence            699999999999999999999987  89999987521 1222232211  111111 123333333       3789999


Q ss_pred             EcCCCC-CC-C--CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          120 IPAGVP-RK-P--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       120 i~ag~~-~~-~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      +.||.. .. +  ..+   -...+..|+..    .+.+.+.+++.. .+.||+++.-....            +.|..-.
T Consensus        78 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~~~~~~~  144 (254)
T 1zmt_A           78 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFG------------PWKELST  144 (254)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTS------------CCTTCHH
T ss_pred             ECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCccccc------------CCCCchH
Confidence            999975 22 1  112   12344556544    444444444443 46777776544322            2222233


Q ss_pred             EEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                      ++.+......+-+.++..++  +..|++.+
T Consensus       145 Y~~sK~a~~~~~~~la~e~~--~~gi~v~~  172 (254)
T 1zmt_A          145 YTSARAGACTLANALSKELG--EYNIPVFA  172 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hcCcEEEE
Confidence            44444444456677777763  33454433

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.37  E-value=0.00065  Score=62.29  Aligned_cols=155  Identities=21%  Similarity=0.241  Sum_probs=88.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe--CCCcHHhhhC-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL--GQQQLEDALT-------  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~-------  113 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.. .  .......  ...+.+++++       
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR-G--AVHHVVDLTNEVSVRALIDFTIDTFG   84 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT-T--CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-C--eEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999997  899999887  2222333311 1  1111110  0112233333       


Q ss_pred             CCCEEEEcCCCCCC-CC----CC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 GMDIVIIPAGVPRK-PG----MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 ~aDiVIi~ag~~~~-~g----~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      ..|++|+.||.... ..    .+   -...+..|+.....+++.+    .+. ..+.||+++......            
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~------------  151 (271)
T 3tzq_B           85 RLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISSATAHA------------  151 (271)
T ss_dssp             CCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTS------------
T ss_pred             CCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCHHHcC------------
Confidence            78999999997522 11    12   2334566766555555544    443 457777776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.+..-.|+.+......+-+.+|..++  +..|++.++
T Consensus       152 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  187 (271)
T 3tzq_B          152 AYDMSTAYACTKAAIETLTRYVATQYG--RHGVRCNAI  187 (271)
T ss_dssp             BCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence            233333444544444556777777763  334544433

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.37  E-value=0.00048  Score=61.30  Aligned_cols=114  Identities=15%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEE-EeCCCcHHhhh-------CCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG-FLGQQQLEDAL-------TGMD  116 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~aD  116 (358)
                      ++|.|+||+|.+|++++..|+..|.  +|+++|++..  .....++...   ..+.. .+...+.++++       .+.|
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELEGA---LPLPGDVREEGDWARAVAAMEEAFGELS   80 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTC---EEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhhc---eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999987  8999998652  1111122111   00110 00011222222       3789


Q ss_pred             EEEEcCCCCCCCC---CC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCC
Q 018265          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       117 iVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      +||+.+|......   .+   -...+..|+...    +.+.+.+++. ..+.|+++|...
T Consensus        81 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~  139 (234)
T 2ehd_A           81 ALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSLA  139 (234)
T ss_dssp             EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCTT
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCch
Confidence            9999998643211   11   233455665544    4555555443 356777776543

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.37  E-value=0.00011  Score=66.12  Aligned_cols=154  Identities=13%  Similarity=0.033  Sum_probs=83.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh---------CCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL---------TGMD  116 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al---------~~aD  116 (358)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++...... .. .. ...++..   ..+.++++         .+.|
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~-~~-~~~D~~~---~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEAS-AS-VI-VKMTDSF---TEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSS-EE-EE-CCCCSCH---HHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccC-Cc-EE-EEcCCCC---HHHHHHHHHHHHHHhCCCCCC
Confidence            35899999999999999999999987  89999987621100 00 00 0011100   01122222         3789


Q ss_pred             EEEEcCCCCCCC----CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          117 IVIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       117 iVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      ++|+.||.....    ..+   -...+..|+.....+.+.+..+- ..+.|++++.-....            +.|..-.
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~~  146 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD------------GTPGMIG  146 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCTTBHH
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc------------CCCCchH
Confidence            999999864321    111   23345667766666666655432 246777776533211            2333333


Q ss_pred             EEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ++.+......+-+.++..++..+..|++.++
T Consensus       147 Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v  177 (241)
T 1dhr_A          147 YGMAKGAVHQLCQSLAGKNSGMPSGAAAIAV  177 (241)
T ss_dssp             HHHHHHHHHHHHHHHTSTTSSCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCeEEEEE
Confidence            4444333334455555554322455654444

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.37  E-value=0.0014  Score=59.81  Aligned_cols=148  Identities=14%  Similarity=0.062  Sum_probs=86.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCC---cHHhhh-------C
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------T  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al-------~  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++...+           ..+..+. .-+   +.++++       .
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~-----------~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   73 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGE-----------AKYDHIECDVTNPDQVKASIDHIFKEYG   73 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCS-----------CSSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccC-----------CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999987  899999875221           0011110 001   222223       3


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      +.|++|..||.....   ..+   -...+..|+.....+++.+..+   ...+.||+++.-....            +.+
T Consensus        74 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~  141 (264)
T 2dtx_A           74 SISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI------------ITK  141 (264)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS------------CCT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc------------CCC
Confidence            799999999865321   112   2334566666544444444332   2346777776543211            233


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..-.|+.+......+.+.++..++  +. |++.++.
T Consensus       142 ~~~~Y~~sK~a~~~~~~~la~e~~--~~-i~vn~v~  174 (264)
T 2dtx_A          142 NASAYVTSKHAVIGLTKSIALDYA--PL-LRCNAVC  174 (264)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHT--TT-SEEEEEE
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhc--CC-cEEEEEE
Confidence            333445554444566777888875  33 6665555

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.37  E-value=0.00045  Score=62.59  Aligned_cols=154  Identities=17%  Similarity=0.222  Sum_probs=87.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQ---QLEDALT------  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~------  113 (358)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++..  .....++..     .+..+.. -+   +.+++++      
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGD-----AALAVAADISKEADVDAAVEAALSKF   81 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999987  8999998762  222222311     1111111 11   2233333      


Q ss_pred             -CCCEEEEcCCCCCCCC----CCH---HhHHHHHHH----HHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHH
Q 018265          114 -GMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~g----~~r---~~~~~~N~~----i~~~i~~~i~~~~---p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                       ..|++|+.||.....+    .+.   ...+..|+.    +.+.+.+.+.+..   ..+.|++++......         
T Consensus        82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------  152 (261)
T 3n74_A           82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR---------  152 (261)
T ss_dssp             SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS---------
T ss_pred             CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC---------
Confidence             7899999999754222    121   223444544    4555555555442   256677776544221         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                         +.|..-.++.+......+-+.++..+.  +..|++..+.
T Consensus       153 ---~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v~  189 (261)
T 3n74_A          153 ---PRPNLAWYNATKGWVVSVTKALAIELA--PAKIRVVALN  189 (261)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ---CCCCccHHHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence               233333345544444556777777764  3455554443

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.37  E-value=0.00044  Score=64.97  Aligned_cols=119  Identities=8%  Similarity=0.066  Sum_probs=70.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-CC---CCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MD---TNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-~~---~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +|||+|||+ |.+|..++..|. .+.  +|.+++++....  ..+.. ..   ..........+.+ .++..++|+||++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~--~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQA--AAIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHH--HHHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHH--HHHHhCCceEecCCCeeccccccc-ccccCCCCEEEEE
Confidence            379999998 999999999999 776  999999864211  11211 10   0000000000111 2457899999998


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eecc
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLD  195 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t~ld  195 (358)
                      .-    +.            -+.++++.++...++. |+.+.|-++..-     .+.+.  +|..++++- +...
T Consensus        75 vK----~~------------~~~~~l~~l~~~~~~~-ivs~~nGi~~~e-----~l~~~--~~~~~vl~g~~~~~  125 (307)
T 3ego_A           75 VK----QH------------QLQSVFSSLERIGKTN-ILFLQNGMGHIH-----DLKDW--HVGHSIYVGIVEHG  125 (307)
T ss_dssp             CC----GG------------GHHHHHHHTTSSCCCE-EEECCSSSHHHH-----HHHTC--CCSCEEEEEEECCE
T ss_pred             eC----HH------------HHHHHHHHhhcCCCCe-EEEecCCccHHH-----HHHHh--CCCCcEEEEEEeec
Confidence            52    11            1334456666555667 777889886542     23333  677788655 5444

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.37  E-value=0.0018  Score=59.88  Aligned_cols=159  Identities=17%  Similarity=0.179  Sum_probs=90.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +...+.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++....  ..+..+.. -+|   .++++      
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK  102 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  999999876  233334443321  22222211 122   22223      


Q ss_pred             -CCCCEEEEcCCCCCC--C--CCCH---HhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 -TGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       ...|++|+.||....  +  ..+.   ...+..|+....    .+.+.+++. ..+.||+++.-....          .
T Consensus       103 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~~~~----------~  171 (283)
T 3v8b_A          103 FGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSSINGTR----------T  171 (283)
T ss_dssp             HSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT----------B
T ss_pred             hCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEcChhhcc----------C
Confidence             379999999997432  1  2222   234556654444    444444544 356777776543221          0


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+.|..-.++.+......+-+.+|..++  +..|++..+-
T Consensus       172 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  209 (283)
T 3v8b_A          172 FTTPGATAYTATKAAQVAIVQQLALELG--KHHIRVNAVC  209 (283)
T ss_dssp             CCSTTCHHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCcEEEEEE
Confidence            0122233344544444557778888874  4556554443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.36  E-value=0.0039  Score=56.51  Aligned_cols=159  Identities=14%  Similarity=0.128  Sum_probs=89.7

Q ss_pred             CCCCEEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhh----
Q 018265           44 SPGFKVAVLGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G-~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al----  112 (358)
                      .+.++|.|+||+| .+|.+++..|+..|.  .|+++|++.  ......++.... ...+..+... +|   .++++    
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTV   96 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHH
Confidence            4456899999977 499999999999987  899999876  222333443321 1233332211 22   22233    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          113 ---TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       113 ---~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                         ...|++|+.||......   .+   -...+..|+.    +.+.+.+.+.+....+.|++++......          
T Consensus        97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------  166 (266)
T 3o38_A           97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR----------  166 (266)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC----------
T ss_pred             HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC----------
Confidence               36799999999753221   12   2233455644    4444445554444567777776543221          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                        +.+..-.++.+......+-+.++..+.  +..|++..+
T Consensus       167 --~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v  202 (266)
T 3o38_A          167 --AQHSQSHYAAAKAGVMALTRCSAIEAV--EFGVRINAV  202 (266)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence              233333455554444556677777763  334544433

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.36  E-value=0.0025  Score=57.63  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=88.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-C--Cc---HHhhh---
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-Q--QQ---LEDAL---  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t--~d---~~~al---  112 (358)
                      .+.+++.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++..... ..+..+.. -  +|   .++++   
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHH
Confidence            4456899999999999999999999987  899999876  2222233322110 01111110 0  12   22222   


Q ss_pred             ----CCCCEEEEcCCCCCC--C--CCCH---HhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHH
Q 018265          113 ----TGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       113 ----~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                          ...|++|+.||....  +  ..+.   ...+..|+.....+++.    +++. ..+.||+++......        
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~--------  157 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS-DAGSLVFTSSSVGRQ--------  157 (252)
T ss_dssp             HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGTS--------
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC-CCCEEEEECChhhcc--------
Confidence                378999999996321  1  1222   23455665554444444    4443 456777766543221        


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                          +.+..-.|+.+......+-+.+|..++  +. |++..+.
T Consensus       158 ----~~~~~~~Y~asK~a~~~l~~~la~e~~--~~-irvn~v~  193 (252)
T 3f1l_A          158 ----GRANWGAYAASKFATEGMMQVLADEYQ--QR-LRVNCIN  193 (252)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHTT--TT-CEEEEEE
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHhc--CC-cEEEEEe
Confidence                233333444544444557788888875  33 6555443

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.36  E-value=0.001  Score=61.24  Aligned_cols=158  Identities=15%  Similarity=0.131  Sum_probs=88.2

Q ss_pred             CCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  112 (358)
                      +.++|.|+||+|+  +|.+++..|+..|.  +|+++|++.......++.....  .+..+. .-+|   .++++      
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFN--PAAVLPCDVISDQEIKDLFVELGKV  100 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGC--CSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence            3458999999867  99999999999987  8999998763333333432211  111111 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---C-----CC---HHhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHH
Q 018265          113 -TGMDIVIIPAGVPRKP---G-----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g-----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                       ..-|++|+.||.....   +     .+   -...+..|+.....+++.+..+-  ..+.||+++......         
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------  171 (280)
T 3nrc_A          101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK---------  171 (280)
T ss_dssp             CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS---------
T ss_pred             cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc---------
Confidence             3569999999975321   1     11   12345566655555555544331  256777776543221         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                         +.|..-.++.+......+-+.++..++  +..|++.++-
T Consensus       172 ---~~~~~~~Y~asKaal~~~~~~la~e~~--~~gi~v~~v~  208 (280)
T 3nrc_A          172 ---AMPSYNTMGVAKASLEATVRYTALALG--EDGIKVNAVS  208 (280)
T ss_dssp             ---CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             ---CCCCchhhHHHHHHHHHHHHHHHHHHH--HcCcEEEEEe
Confidence               233333455544444556777777764  3445544443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.36  E-value=0.002  Score=59.93  Aligned_cols=158  Identities=16%  Similarity=0.147  Sum_probs=89.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CCc--
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTNAVVRGFLG-QQQ--  107 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~d--  107 (358)
                      +.+.+.|+||+|.+|.+++..|+..|.  .|+++|++.              ......++....  ..+..+.. -+|  
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~  102 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFD  102 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHH
Confidence            345899999999999999999999997  899999862              111222333221  22222211 122  


Q ss_pred             -HHhhh-------CCCCEEEEcCCCCCCCC----CCH---HhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          108 -LEDAL-------TGMDIVIIPAGVPRKPG----MTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       108 -~~~al-------~~aDiVIi~ag~~~~~g----~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                       .++++       ...|++|+.||......    .+.   ...+..|+..    .+.+.+.+.+....+.||+++.-...
T Consensus       103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~  182 (299)
T 3t7c_A          103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGL  182 (299)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhc
Confidence             22223       37899999998643221    122   2345556544    44445555554456778887654322


Q ss_pred             cHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       169 ~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .            +.|..-.++.+......+-+.+|..++  +..|++..+-
T Consensus       183 ~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  220 (299)
T 3t7c_A          183 R------------GAENIGNYIASKHGLHGLMRTMALELG--PRNIRVNIVC  220 (299)
T ss_dssp             S------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             c------------CCCCcchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEEe
Confidence            1            233333344444344456777777774  3445544443

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.36  E-value=0.00079  Score=59.89  Aligned_cols=153  Identities=17%  Similarity=0.133  Sum_probs=85.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEE--EeCCCcHHhhhCCC----CEEE
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG--FLGQQQLEDALTGM----DIVI  119 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~--~~~t~d~~~al~~a----DiVI  119 (358)
                      +|.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++   ........  .+...+.+++++..    |++|
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             EEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            699999999999999999999987  8999998752  1111112   11111111  11112233444443    8999


Q ss_pred             EcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhC-C-CeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-P-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       120 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      +.||......   .+   -...+..|+.....+.+.+..+- . ...+++++......            +.+..-.++.
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~------------~~~~~~~Y~a  145 (230)
T 3guy_A           78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ------------PKAQESTYCA  145 (230)
T ss_dssp             ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS------------CCTTCHHHHH
T ss_pred             EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC------------CCCCCchhHH
Confidence            9998653221   12   22345667665555555554432 1 23666665433221            2333334555


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +......+-+.++..++  +..|++..+
T Consensus       146 sKaa~~~~~~~la~e~~--~~gi~v~~v  171 (230)
T 3guy_A          146 VKWAVKGLIESVRLELK--GKPMKIIAV  171 (230)
T ss_dssp             HHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHH--hcCeEEEEE
Confidence            54445567788888875  445555444

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.36  E-value=0.0013  Score=60.51  Aligned_cols=160  Identities=11%  Similarity=0.037  Sum_probs=88.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh----
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----  112 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al----  112 (358)
                      ..+.+++.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++.... ...+..+.. -+|   .++++    
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~  100 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQAL  100 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            34556899999999999999999999987  999999875  222233332211 112222211 122   22223    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 ---TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 ---~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                         ...|++|+.||......   .+   -...+..|+.....+.+.+...   ...+.||+++.-....           
T Consensus       101 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------  169 (277)
T 4fc7_A          101 KEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR-----------  169 (277)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH-----------
T ss_pred             HHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC-----------
Confidence               37899999998643211   12   2234556665555555544321   1356777776432110           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       170 -~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  205 (277)
T 4fc7_A          170 -GQALQVHAGSAKAAVDAMTRHLAVEWG--PQNIRVNSL  205 (277)
T ss_dssp             -TCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence             233333444444444456777787774  344544433

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.35  E-value=0.0004  Score=64.17  Aligned_cols=77  Identities=22%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c---h-hHH---HHHhcCCCCCeEEE-EeCCCcHHhhhCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---P-GVT---ADISHMDTNAVVRG-FLGQQQLEDALTGMD  116 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~---~-g~~---~dl~~~~~~~~v~~-~~~t~d~~~al~~aD  116 (358)
                      ++||+|+||+|++|++++..|+..|.  +++.++++. .   . ...   .++..... ..+.. .....++.++++++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v-~~v~~D~~d~~~l~~~~~~~d   78 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLGV-ILLEGDINDHETLVKAIKQVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCCC-EEEEeCCCCHHHHHHHHhCCC
Confidence            46899999999999999999998886  788888864 1   1 111   12222111 11111 011124567889999


Q ss_pred             EEEEcCCCC
Q 018265          117 IVIIPAGVP  125 (358)
Q Consensus       117 iVIi~ag~~  125 (358)
                      +||++++..
T Consensus        79 ~vi~~a~~~   87 (307)
T 2gas_A           79 IVICAAGRL   87 (307)
T ss_dssp             EEEECSSSS
T ss_pred             EEEECCccc
Confidence            999998754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.35  E-value=0.0015  Score=59.91  Aligned_cols=154  Identities=13%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  112 (358)
                      .+++.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++....  ..+..+. .-+|   .++++       
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999997  899999876  233334444321  2222221 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ...|++|+.||......   .+   -...+..|+...    +.+.+.+++. ..+.||+++.-....            +
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~~------------~  146 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIGSIGALS------------V  146 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTC------------C
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEcCHHHcc------------c
Confidence            37899999999753221   12   123345565444    4455555443 357777776543221            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+..-.++.+......+-+.++..+   + .|++..+-
T Consensus       147 ~~~~~~Y~asKaal~~l~~~la~e~---~-gIrvn~v~  180 (264)
T 3tfo_A          147 VPTAAVYCATKFAVRAISDGLRQES---T-NIRVTCVN  180 (264)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHC---S-SEEEEEEE
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHhC---C-CCEEEEEe
Confidence            3333334444333345666677764   2 56554443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.35  E-value=0.0006  Score=64.37  Aligned_cols=66  Identities=17%  Similarity=0.118  Sum_probs=48.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc-----hhHHHHHhcCCCCCeEEEEeCCC-cHHhhhCCCCEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFLGQQ-QLEDALTGMDIV  118 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~t~-d~~~al~~aDiV  118 (358)
                      +|||+|||+ |.+|..++..|+..| .  +|.++|++..     ......+....  .    .   + ++++++++||+|
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g--~----~---~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG--V----E---PLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT--C----E---EESSGGGGGGCSEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC--C----C---CCCHHHHHhcCCEE
Confidence            369999998 999999999999988 6  9999998741     12222232221  1    1   2 457889999999


Q ss_pred             EEcCC
Q 018265          119 IIPAG  123 (358)
Q Consensus       119 Ii~ag  123 (358)
                      |++..
T Consensus        92 i~avp   96 (317)
T 4ezb_A           92 LSLVV   96 (317)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            99853

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.35  E-value=0.00054  Score=63.00  Aligned_cols=157  Identities=10%  Similarity=0.106  Sum_probs=90.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-----  113 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++....  ..+..+.. -+   +.+++++     
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999997  899999876  223334443321  22222111 11   2233333     


Q ss_pred             --CCCEEEEcCCCCCCCC---CCH---HhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        ..|++|+.||......   .+.   ...+..|+....    ...+.+.+. ..+.||+++.-....            
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iV~isS~~~~~------------  167 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR-GYGKIVNIGSLTSEL------------  167 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEccHHhCC------------
Confidence              7899999999753221   122   233555654444    445555443 346777776533221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.|+.+......+-+.+|..++  +..|++..+.
T Consensus       168 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  204 (271)
T 4ibo_A          168 ARATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQANAIG  204 (271)
T ss_dssp             BCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEEE
Confidence            233333455554444567777887774  4455554444

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.35  E-value=0.0016  Score=59.79  Aligned_cols=158  Identities=14%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-------------C--chhHHHHHhcCCCCCeEEEEe-CCCc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-------------N--TPGVTADISHMDTNAVVRGFL-GQQQ  107 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~-------------~--~~g~~~dl~~~~~~~~v~~~~-~t~d  107 (358)
                      .+..++.|+||+|.+|.+++..|+..|.  +|+++|++             .  ......++....  ..+..+. .-+|
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   88 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRD   88 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence            3445899999999999999999999997  99999973             1  112222333221  2222221 1122


Q ss_pred             ---HHhhh-------CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          108 ---LEDAL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       108 ---~~~al-------~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                         .++++       ...|++|+.||......   .+   -...+..|+.    +.+.+.+.+.+....+.||+++....
T Consensus        89 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~  168 (280)
T 3pgx_A           89 DAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAG  168 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhh
Confidence               22222       37899999999753211   12   1223445554    44555555565555677888765432


Q ss_pred             ccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       168 ~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ..            +.|..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       169 ~~------------~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  206 (280)
T 3pgx_A          169 LK------------ATPGNGHYSASKHGLTALTNTLAIELG--EYGIRVNSI  206 (280)
T ss_dssp             TS------------CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cc------------CCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            21            233333444544444556677777763  344544333

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.34  E-value=0.0046  Score=58.98  Aligned_cols=160  Identities=17%  Similarity=0.165  Sum_probs=94.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---------hHHHHHhcCCCCCeEEEEeC-CCc---HHh
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGFLG-QQQ---LED  110 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---------g~~~dl~~~~~~~~v~~~~~-t~d---~~~  110 (358)
                      .+...|.|+||+|.+|.+++..|+..|.  +|+++|++...         ....++....  ..+..+.. -+|   .++
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~  118 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISA  118 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHH
Confidence            4456899999999999999999999987  89999987621         2233343321  22222211 122   222


Q ss_pred             hh-------CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHH
Q 018265          111 AL-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAA  174 (358)
Q Consensus       111 al-------~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~  174 (358)
                      ++       .+.|++|+.||.....   ..+   -...+..|+.-...+++.+..+   ...+.||+++.+......   
T Consensus       119 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~---  195 (346)
T 3kvo_A          119 AVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV---  195 (346)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG---
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC---
Confidence            33       3899999999864321   112   2334566766655555555332   245788888877654320   


Q ss_pred             HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       175 ~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                             .++..-.|+.+...-..+-+.+|+.++   ..|++..+.
T Consensus       196 -------~~~~~~~Y~aSKaal~~l~~~la~e~~---~gIrvn~v~  231 (346)
T 3kvo_A          196 -------WFKQHCAYTIAKYGMSMYVLGMAEEFK---GEIAVNALW  231 (346)
T ss_dssp             -------GTSSSHHHHHHHHHHHHHHHHHHHHTT---TTCEEEEEE
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHHhc---CCcEEEEEe
Confidence                   122233445544444567788888886   456555554

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.34  E-value=0.0022  Score=58.76  Aligned_cols=157  Identities=19%  Similarity=0.186  Sum_probs=90.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-------------C--chhHHHHHhcCCCCCeEEEEe-CCCcH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-------------N--TPGVTADISHMDTNAVVRGFL-GQQQL  108 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~-------------~--~~g~~~dl~~~~~~~~v~~~~-~t~d~  108 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  .|+++|++             .  ......++....  ..+..+. .-+|.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~   85 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDF   85 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCH
Confidence            345899999999999999999999998  89999983             1  111222233221  2222221 11222


Q ss_pred             ---Hhh-------hCCCCEEEEcCCCCCCCC---CCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          109 ---EDA-------LTGMDIVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       109 ---~~a-------l~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                         +++       +...|++|+.||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.||+++.-...
T Consensus        86 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~  165 (277)
T 3tsc_A           86 DRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGM  165 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhC
Confidence               222       236899999999754321   122   223455544    455566667666556788887654422


Q ss_pred             cHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       169 ~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .            +.|..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       166 ~------------~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  202 (277)
T 3tsc_A          166 K------------MQPFMIHYTASKHAVTGLARAFAAELG--KHSIRVNSV  202 (277)
T ss_dssp             S------------CCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             C------------CCCCchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            1            233333344444444557777888774  344554444

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.33  E-value=0.0015  Score=60.76  Aligned_cols=160  Identities=11%  Similarity=0.088  Sum_probs=92.0

Q ss_pred             CCCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEe--CCCcHHhhh------
Q 018265           44 SPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL--GQQQLEDAL------  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~--~t~d~~~al------  112 (358)
                      .+.+++.|+||+|  .+|.+++..|+..|.  .|++.|++.. .....++.............  ...+.++++      
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3445899999976  999999999999987  8999998762 12222221110011111100  011222233      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 -TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       ...|++|+.||....     +  ..+   -...+..|+.....+++.+..+- ..+.||+++.-....           
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~-----------  174 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK-----------  174 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----------
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc-----------
Confidence             367999999997531     1  122   23456678777777777776654 356777776533221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.+..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       175 -~~~~~~~Y~asKaal~~l~~~la~e~~--~~gIrvn~v  210 (296)
T 3k31_A          175 -VVPHYNVMGVCKAALEASVKYLAVDLG--KQQIRVNAI  210 (296)
T ss_dssp             -CCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             -CCCCchhhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence             233333455554444556777787774  345554444

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.32  E-value=0.00013  Score=67.07  Aligned_cols=154  Identities=18%  Similarity=0.199  Sum_probs=85.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-----HHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++.....     ..|+.+..   .+...  -....+.+...|++|
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~~~~~--~~~~~~~~g~iD~lv   99 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAA---YADGL--PGAVAAGLGRLDIVV   99 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHH---HHHHH--HHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHH---HHHHH--HHHHHHhcCCCCEEE
Confidence            445899999999999999999999987  8999998751110     01111000   00000  001123345899999


Q ss_pred             EcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 018265          120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       120 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      +.||......   .+   -...+..|+.....+++.    +++. ..+.||+++.-....            +.|..-.+
T Consensus       100 nnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~------------~~~~~~~Y  166 (266)
T 3uxy_A          100 NNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCWGLR------------PGPGHALY  166 (266)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTB------------CCTTBHHH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHhCC------------CCCCChHH
Confidence            9999753211   12   223445665544444444    4544 356777776544322            23333344


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+......+-+.+|..++  +..|++.++-
T Consensus       167 ~asKaa~~~l~~~la~e~~--~~gI~vn~v~  195 (266)
T 3uxy_A          167 CLTKAALASLTQCMGMDHA--PQGIRINAVC  195 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence            5544444556777777774  3345544443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.32  E-value=0.0011  Score=64.54  Aligned_cols=97  Identities=15%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCc-hhHHHH-HhcCC------CCCe--EE--E-E-eCCCcHHh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTAD-ISHMD------TNAV--VR--G-F-LGQQQLED  110 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~~-~g~~~d-l~~~~------~~~~--v~--~-~-~~t~d~~~  110 (358)
                      +|||+|||+ |.+|..++..|+. .|.  +|.++|.... ...... +....      ....  +.  . . ..++|+++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEI   78 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHH
Confidence            379999998 9999999999987 476  9999993221 112222 22110      0001  11  0 0 12457888


Q ss_pred             hhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEE
Q 018265          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL  161 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv  161 (358)
                      ++++||+||++....                ...++++.+..+. |+.+|+.
T Consensus        79 a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           79 AISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            899999999985321                1245666666655 5665544

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.31  E-value=0.00059  Score=61.55  Aligned_cols=154  Identities=19%  Similarity=0.143  Sum_probs=83.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCc---HHhhh-------CC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDAL-------TG  114 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al-------~~  114 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++....  .++.... ....... .-+|   .++++       ..
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~~~g~   77 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPL--REAAEAV-GAHPVVM-DVADPASVERGFAEALAHLGR   77 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHHHTT-TCEEEEC-CTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHc-CCEEEEe-cCCCHHHHHHHHHHHHHHcCC
Confidence            345899999999999999999999987  899999875211  1111110 0111111 1122   22333       35


Q ss_pred             CCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      .|++|+.||......   .+   -...+..|+.....+++.+..+   ...+.|++++.-. ..            +.|.
T Consensus        78 id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~------------~~~~  144 (245)
T 1uls_A           78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YL------------GNLG  144 (245)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GG------------CCTT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hc------------CCCC
Confidence            899999999753211   11   2334566766655555554433   2346777776543 21            1222


Q ss_pred             CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .-.++.+......+-+.++..+.  +..|++.++
T Consensus       145 ~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  176 (245)
T 1uls_A          145 QANYAASMAGVVGLTRTLALELG--RWGIRVNTL  176 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHHh--HhCeEEEEE
Confidence            22333333333445666777763  344554444

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.31  E-value=0.00036  Score=65.06  Aligned_cols=74  Identities=16%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH-HHHHhcCCCCCeEEEEe--CCCcHHhhhCCCCEEEEcCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~-~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~ag  123 (358)
                      ||+|+||+|++|++++..|+..|.  +|+.++++.. ... ..++....  ..+....  ...++.++++++|+||++++
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~--v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLG--AIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             eEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCC--CEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            899999999999999999999886  8888888752 221 12232211  1111110  11346688999999999987


Q ss_pred             CC
Q 018265          124 VP  125 (358)
Q Consensus       124 ~~  125 (358)
                      ..
T Consensus        89 ~~   90 (318)
T 2r6j_A           89 FP   90 (318)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.31  E-value=0.00033  Score=68.82  Aligned_cols=138  Identities=17%  Similarity=0.216  Sum_probs=79.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCc---HHhh-hCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi  120 (358)
                      +.++|.|+|. |.+|+.++..|...+.  +++++|.+..  .+..+..... .-+.+  ..++   ++++ +.+||+||+
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~--~v~~~~~~g~-~vi~G--Dat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPD--HIETLRKFGM-KVFYG--DATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHH--HHHHHHHTTC-CCEES--CTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHH--HHHHHHhCCC-eEEEc--CCCCHHHHHhcCCCccCEEEE
Confidence            4578999998 9999999999999887  9999999862  1222222211 11211  1122   2333 689999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRA  199 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~  199 (358)
                      +.+.               -..-..++..+++.+|+..|+.-+ ++.+.-      .+++. |  -+.|+--+...+.++
T Consensus        75 ~~~~---------------~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~------~L~~~-G--ad~Vi~~~~~~a~~l  130 (413)
T 3l9w_A           75 AIDD---------------PQTNLQLTEMVKEHFPHLQIIARARDVDHYI------RLRQA-G--VEKPERETFEGALKT  130 (413)
T ss_dssp             CCSS---------------HHHHHHHHHHHHHHCTTCEEEEEESSHHHHH------HHHHT-T--CSSCEETTHHHHHHH
T ss_pred             CCCC---------------hHHHHHHHHHHHHhCCCCeEEEEECCHHHHH------HHHHC-C--CCEEECccHHHHHHH
Confidence            8532               123344566677778987666654 443221      22332 3  234554444344444


Q ss_pred             HHHHHHHhCCCCCCC
Q 018265          200 NTFVAEVLGLDPREV  214 (358)
Q Consensus       200 ~~~lA~~l~v~~~~v  214 (358)
                      -..+-..+|+++..+
T Consensus       131 a~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          131 GRLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHHTTCCHHHH
T ss_pred             HHHHHHHcCCCHHHH
Confidence            444445555555444

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.31  E-value=0.00087  Score=62.29  Aligned_cols=158  Identities=11%  Similarity=0.105  Sum_probs=91.5

Q ss_pred             CCCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh----
Q 018265           44 SPGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al----  112 (358)
                      .+.+++.|+||+|+  +|.+++..|+..|.  .|++.|++. ......++....  ..+..+. .-+|   .++++    
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  104 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL--GAFVAGHCDVADAASIDAVFETLE  104 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH--TCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHHHH
Confidence            44568999999888  99999999999987  899999875 112222222111  1111111 1122   22222    


Q ss_pred             ---CCCCEEEEcCCCCC-----CC--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHH
Q 018265          113 ---TGMDIVIIPAGVPR-----KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       113 ---~~aDiVIi~ag~~~-----~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                         ...|++|+.||...     .+  ..+   -...+..|+.....+++.+..+- ..+.||+++......         
T Consensus       105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~---------  175 (293)
T 3grk_A          105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK---------  175 (293)
T ss_dssp             HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS---------
T ss_pred             HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc---------
Confidence               37899999999753     11  112   23345677776666666665543 357788776543221         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                         +.+..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       176 ---~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  211 (293)
T 3grk_A          176 ---VMPNYNVMGVAKAALEASVKYLAVDLG--PQNIRVNAI  211 (293)
T ss_dssp             ---BCTTTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ---CCCchHHHHHHHHHHHHHHHHHHHHHh--HhCCEEEEE
Confidence               233334455554445567778888774  344544433

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.30  E-value=0.00053  Score=62.27  Aligned_cols=163  Identities=15%  Similarity=0.111  Sum_probs=92.4

Q ss_pred             CCCCCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe--CCCcHHhhhC---
Q 018265           42 GGSPGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL--GQQQLEDALT---  113 (358)
Q Consensus        42 ~~~~~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~---  113 (358)
                      ...+.++|.|+||+  |.+|.+++..|+..|.  +|+++|++. ......++.............  ...+.+++++   
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHH
Confidence            45556799999998  8999999999999987  899999875 222222232111111111110  0112223333   


Q ss_pred             ----CCCEEEEcCCCCCC-----C--C-CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHH
Q 018265          114 ----GMDIVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       114 ----~aDiVIi~ag~~~~-----~--g-~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                          .-|++|+.||....     +  . .+   -...+..|+.....+.+.+..+- +.+.|++++......        
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------  159 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER--------  159 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS--------
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc--------
Confidence                66999999987532     1  1 22   23345667777777777665543 356677766433221        


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                          +.|..-.++.+......+-+.++..++  +..|++.++-
T Consensus       160 ----~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v~  196 (271)
T 3ek2_A          160 ----AIPNYNTMGLAKAALEASVRYLAVSLG--AKGVRVNAIS  196 (271)
T ss_dssp             ----BCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEEE
T ss_pred             ----CCCCccchhHHHHHHHHHHHHHHHHHH--hcCcEEEEEe
Confidence                233334455554444556677777763  3445554443

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.30  E-value=0.0036  Score=57.62  Aligned_cols=156  Identities=16%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      .+++.|+||+|.+|.+++..|+..|.  .|++.|++.   ......++.... ...+..+.. -+|   .++++      
T Consensus        25 ~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           25 TKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999997  899999854   222233343321 123332211 122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.||......   .+   -...+..|+.....+    .+.+.+. ..+.||+++......            
T Consensus       102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------  168 (281)
T 3v2h_A          102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK-GWGRIINIASAHGLV------------  168 (281)
T ss_dssp             TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCccccc------------
Confidence             37899999999753221   12   223455565544444    4444544 346777776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.|..-.++.+......+-+.+|..++  +..|++..+
T Consensus       169 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  204 (281)
T 3v2h_A          169 ASPFKSAYVAAKHGIMGLTKTVALEVA--ESGVTVNSI  204 (281)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            233333445544444556777787774  334544433

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.30  E-value=0.0021  Score=58.47  Aligned_cols=156  Identities=15%  Similarity=0.136  Sum_probs=84.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hhh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDA-------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------  111 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|.   +++       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999987  899999875  222233343321  22222211 1232   122       


Q ss_pred             hCCCCEEEEcCCCC-CC-C--CCC---HHhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 LTGMDIVIIPAGVP-RK-P--GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 l~~aDiVIi~ag~~-~~-~--g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      +...|++|+.||.. .. +  ..+   -...+..|+.....    +.+.+.+. ..+.||+++.-...            
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------  148 (262)
T 1zem_A           82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAGV------------  148 (262)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH------------
T ss_pred             hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhc------------
Confidence            23789999999865 21 1  112   12334556554444    44444433 34677776642210            


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .+.|..-.|+.+......+-+.++..++  +..|++.++
T Consensus       149 ~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v  185 (262)
T 1zem_A          149 KGPPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAI  185 (262)
T ss_dssp             SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHH--hhCeEEEEE
Confidence            1222222344443333446666777663  344544433

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.30  E-value=0.00062  Score=60.87  Aligned_cols=158  Identities=20%  Similarity=0.208  Sum_probs=86.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQ---QLEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-----  113 (358)
                      +.++|.|+||+|++|++++..|+..|.  +|+++|++..  .....++.... ...+..+.. -+   +++++++     
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999887  8999998752  22222232100 112222211 12   2333443     


Q ss_pred             --CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        +.|+||+.||.....   ..+   -...+..|+....    .+.+.+.+. ..+.||++|.-..           .. 
T Consensus        83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~-----------~~-  149 (248)
T 2pnf_A           83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISSVVG-----------FT-  149 (248)
T ss_dssp             SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECCHHH-----------HH-
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEccHHh-----------cC-
Confidence              899999999865321   111   2344566766664    444444443 3456777654210           01 


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|..-.++.+......+.+.+++.++  +..+++.++.
T Consensus       150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v~  186 (248)
T 2pnf_A          150 GNVGQVNYSTTKAGLIGFTKSLAKELA--PRNVLVNAVA  186 (248)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            233333344444444456667777663  3345555554

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.30  E-value=0.0015  Score=58.75  Aligned_cols=106  Identities=17%  Similarity=0.220  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHHHHhcCCCCCeEEEEeCCCcHHhhhC----CCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFLGQQQLEDALT----GMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~t~d~~~al~----~aDiVI  119 (358)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++|++....   ...|+.+.            .+.+++++    ..|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~------------~~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRK------------QAIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCH------------HHHHHHHHHhCCCCCEEE
Confidence            3799999999999999999999987  899999876211   12233221            12334443    459999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCC
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVN  167 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d  167 (358)
                      +.||.....+ .-...+..|+.....+++.+..+   ...+.||++|....
T Consensus        68 ~~Ag~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  117 (257)
T 1fjh_A           68 LCAGLGPQTK-VLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVAS  117 (257)
T ss_dssp             ECCCCCTTCS-SHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred             ECCCCCCCcc-cHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhh
Confidence            9999754122 24445666765555555544432   23467777765443

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.29  E-value=0.001  Score=61.28  Aligned_cols=159  Identities=14%  Similarity=0.135  Sum_probs=83.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  112 (358)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|   .++++     
T Consensus        26 ~~~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~  102 (286)
T 1xu9_A           26 LQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGK  102 (286)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999987  899999875  222222222111 112332211 122   22222     


Q ss_pred             --CCCCEEEEc-CCCCCCC--CCC---HHhHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 --TGMDIVIIP-AGVPRKP--GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 --~~aDiVIi~-ag~~~~~--g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                        .+.|+||+. +|....+  ..+   -...+..|+.....+.    +.+.+.  .+.|++++.-....           
T Consensus       103 ~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~g~iv~isS~~~~~-----------  169 (286)
T 1xu9_A          103 LMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSLAGKV-----------  169 (286)
T ss_dssp             HHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEGGGTS-----------
T ss_pred             HcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC--CCEEEEECCccccc-----------
Confidence              379999998 6754321  112   1234455654444444    433332  35666665433211           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.|..-.++.+......+-..++..++.....|++.++
T Consensus       170 -~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v  207 (286)
T 1xu9_A          170 -AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLC  207 (286)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             -CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence             22323334444333344555666666333344554433

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.29  E-value=0.00067  Score=56.64  Aligned_cols=103  Identities=11%  Similarity=0.013  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chh-HHHHHhcCCCCCeEEEEeCC--CcHHhh-hCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG-VTADISHMDTNAVVRGFLGQ--QQLEDA-LTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g-~~~dl~~~~~~~~v~~~~~t--~d~~~a-l~~aDiVI  119 (358)
                      +..||.|+|+ |.+|+.++..|...+.  +++++|.+. ... ...+..... ...+.+ ..+  ..++++ +++||.||
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~~-~~~i~g-d~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN-ADVIPG-DSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT-CEEEES-CTTSHHHHHHHTTTTCSEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcCC-CeEEEc-CCCCHHHHHHcChhhCCEEE
Confidence            4568999998 9999999999998887  899999864 111 111121111 111111 111  123344 89999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCCCC
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVN  167 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d  167 (358)
                      ++.+..           ..|..    ++..+++..|+..++. +.||..
T Consensus        77 ~~~~~d-----------~~n~~----~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           77 ALSDND-----------ADNAF----VVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             ECSSCH-----------HHHHH----HHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EecCCh-----------HHHHH----HHHHHHHHCCCCEEEEEECCHHH
Confidence            985321           33432    2344445567665554 456654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.29  E-value=0.0025  Score=58.71  Aligned_cols=153  Identities=15%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcH---Hhh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL---EDA-------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------  111 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.     ..+..+. .-+|.   +++       
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIG-----CGAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----SSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CcceEEEecCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999987  999999875  222222331     1111111 11222   222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      +...|++|+.||.....   ..+   -...+..|+.....++    +.+.+. ..+.||+++......            
T Consensus       101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~~~~------------  167 (277)
T 3gvc_A          101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSSLAGQV------------  167 (277)
T ss_dssp             HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhcc------------
Confidence            23789999999875321   122   2334556665544444    444433 467777776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +.+..-.++.+......+-+.+|..++  +..|++.++
T Consensus       168 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (277)
T 3gvc_A          168 AVGGTGAYGMSKAGIIQLSRITAAELR--SSGIRSNTL  203 (277)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            233333455554444556777777764  344544443

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.29  E-value=0.002  Score=58.64  Aligned_cols=156  Identities=15%  Similarity=0.084  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++....  ..+..+.. -+|   .++++      
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999997  899999876  223333443321  22222211 122   22223      


Q ss_pred             -CCCCEEEEcCCCCCC--C--CCC---HHhHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 -TGMDIVIIPAGVPRK--P--GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                       ...|++|+.||....  +  ..+   -...+..|+.....+    .+.+.+.  .+.||+++.-....           
T Consensus        86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~g~iv~isS~~~~~-----------  152 (264)
T 3ucx_A           86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES--KGAVVNVNSMVVRH-----------  152 (264)
T ss_dssp             TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--TCEEEEECCGGGGC-----------
T ss_pred             cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEECcchhcc-----------
Confidence             378999999986322  1  112   123345565544444    4444443  36777776543221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.+..-.|+.+......+-+.+|..++  +..|++..+-
T Consensus       153 -~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v~  189 (264)
T 3ucx_A          153 -SQAKYGAYKMAKSALLAMSQTLATELG--EKGIRVNSVL  189 (264)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEEE
T ss_pred             -CCCccHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence             223333344444334456677777764  3455554443

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.28  E-value=0.0004  Score=69.54  Aligned_cols=113  Identities=12%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-----HHHHHhcC-------CCCCeEEEEeCC----CcH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHM-------DTNAVVRGFLGQ----QQL  108 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-----~~~dl~~~-------~~~~~v~~~~~t----~d~  108 (358)
                      .+++|.|+||+|++|++++..|...+.  +|++++++....     ....+...       .....+..+.+.    .++
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            357999999999999999999966665  899998866211     11111100       001234333211    122


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      . ++.++|+||++|+... ......++...|+...+.+++.+.+ . ...++++|
T Consensus       227 ~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~-~~~~v~iS  277 (508)
T 4f6l_B          227 V-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS  277 (508)
T ss_dssp             C-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T-TCEEEEEE
T ss_pred             C-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-C-CCcEEEeC
Confidence            2 5689999999998643 1223445667899999999999987 3 23444443

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.28  E-value=0.00091  Score=60.68  Aligned_cols=157  Identities=11%  Similarity=0.078  Sum_probs=89.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++....  ..+..+.. -+|   .+++++     
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            345899999999999999999999997  899999976  333334444321  23333211 122   233333     


Q ss_pred             -CCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       ..|++|+.||......   .+   -...+..|+.    +.+.+.+.+++.. .+.||+++.-....            +
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~  148 (252)
T 3h7a_A           82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGATASLR------------G  148 (252)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTC------------C
T ss_pred             CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHHcC------------C
Confidence             6699999999754211   12   1233455544    4455555555543 56777765433221            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCce-EEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV-PVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~-~v~G  220 (358)
                      .|..-.++.+......+-+.++..++  +..|++ .++.
T Consensus       149 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v~n~v~  185 (252)
T 3h7a_A          149 GSGFAAFASAKFGLRAVAQSMARELM--PKNIHVAHLII  185 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhh--hcCCEEEEEec
Confidence            33333344444444456677777774  344555 3443

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.27  E-value=0.0018  Score=60.24  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=84.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeC-CCc---HHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~-t~d---~~~al~----  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++..... ...+..+.. -+|   .+++++    
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  2222233432211 012332211 122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCCC-----CC---HHhHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          114 ---GMDIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~g-----~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                         ..|++|+.||......     .+   -...+..|+.....++    +.+.+..  +.||+++.-....         
T Consensus       103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS~~~~~---------  171 (297)
T 1xhl_A          103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGP---------  171 (297)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSS---------
T ss_pred             hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcCchhcc---------
Confidence               7899999998643211     11   2234555655444444    4443322  6777776533211         


Q ss_pred             HhCCC-CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          179 KVGTY-DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       179 ~~~~~-p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                         +. |..-.|+.+......+-+.++..++  +..|++.++
T Consensus       172 ---~~~~~~~~Y~asKaa~~~l~~~la~el~--~~gI~v~~v  208 (297)
T 1xhl_A          172 ---QAHSGYPYYACAKAALDQYTRCTAIDLI--QHGVRVNSV  208 (297)
T ss_dssp             ---SCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             ---CCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence               11 2222344443333445666676653  344554443

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.27  E-value=0.0015  Score=58.71  Aligned_cols=159  Identities=17%  Similarity=0.159  Sum_probs=87.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--chhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTNAVVRGFLGQ-QQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~-~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~----  113 (358)
                      +.++|.|+||+|++|++++..|+..|.  +|+++|++ .  ......++...  ...+..+... +|   .+++++    
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVA   81 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987  89999987 4  22222333322  1233322111 22   333444    


Q ss_pred             ---CCCEEEEcCCC-CCC-C--CCC---HHhHHHHHHHHHHHHHH----HHHhh----CCCeEEEEecCCCCccHHHHHH
Q 018265          114 ---GMDIVIIPAGV-PRK-P--GMT---RDDLFNINAGIVKTLCE----GIAKC----CPKAIVNLISNPVNSTVPIAAE  175 (358)
Q Consensus       114 ---~aDiVIi~ag~-~~~-~--g~~---r~~~~~~N~~i~~~i~~----~i~~~----~p~a~viv~tNP~d~~t~~~~~  175 (358)
                         +.|+||+.||. ... +  ..+   -...+..|+.....+.+    .+.+.    .+.+.+++++.-..        
T Consensus        82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~--------  153 (258)
T 3afn_B           82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAG--------  153 (258)
T ss_dssp             HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHH--------
T ss_pred             HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhh--------
Confidence               89999999986 321 1  111   22334555544444433    44332    22366776654221        


Q ss_pred             HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       176 ~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                         ...+.|+.-.++.+......+...+++.++  +..+++.++.
T Consensus       154 ---~~~~~~~~~~Y~~sK~a~~~~~~~~~~e~~--~~gi~v~~v~  193 (258)
T 3afn_B          154 ---HTGGGPGAGLYGAAKAFLHNVHKNWVDFHT--KDGVRFNIVS  193 (258)
T ss_dssp             ---HHCCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ---ccCCCCCchHHHHHHHHHHHHHHHHHHhhc--ccCeEEEEEe
Confidence               011233334455554444556667777663  3345555444

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.26  E-value=0.0013  Score=59.18  Aligned_cols=143  Identities=15%  Similarity=0.118  Sum_probs=78.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCcH---Hh---hhCCCCE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---ED---ALTGMDI  117 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~---al~~aDi  117 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++...  ..++....   .+..+.. -+|.   ++   .+...|+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~--~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~id~   77 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP---GIQTRVLDVTKKKQIDQFANEVERLDV   77 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST---TEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHhcc---CceEEEeeCCCHHHHHHHHHHhCCCCE
Confidence            345899999999999999999999987  89999986511  11111111   1222111 1222   12   2457899


Q ss_pred             EEEcCCCCCCC---CCC---HHhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC-CC
Q 018265          118 VIIPAGVPRKP---GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD-PK  186 (358)
Q Consensus       118 VIi~ag~~~~~---g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p-~~  186 (358)
                      +|+.||.....   ..+   -...+..|+.....    +.+.+.+. ..+.|++++......            +.| ..
T Consensus        78 lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------~~~~~~  144 (246)
T 2ag5_A           78 LFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSV------------KGVVNR  144 (246)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT------------BCCTTB
T ss_pred             EEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEechHhCc------------CCCCCC
Confidence            99999875321   112   12334556554444    44444443 356777776543221            112 22


Q ss_pred             cEEEeeeccHHHHHHHHHHHh
Q 018265          187 RLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l  207 (358)
                      -.++.+......+-+.++..+
T Consensus       145 ~~Y~~sK~a~~~~~~~la~e~  165 (246)
T 2ag5_A          145 CVYSTTKAAVIGLTKSVAADF  165 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHh
Confidence            233444333445666777766

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.26  E-value=0.0011  Score=60.83  Aligned_cols=157  Identities=13%  Similarity=0.116  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeC-CCc---HHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~-t~d---~~~al~----  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++..... ...+..+.. -+|   .+++++    
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   82 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  2222233432211 012333211 122   222332    


Q ss_pred             ---CCCEEEEcCCCCCCCC-------CC---HHhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHH
Q 018265          114 ---GMDIVIIPAGVPRKPG-------MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~g-------~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~  176 (358)
                         ..|++|+.||......       .+   -...+..|+.....+++.    +.+..  +.||+++.-....       
T Consensus        83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~-------  153 (280)
T 1xkq_A           83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGP-------  153 (280)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGSS-------
T ss_pred             hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecCccccC-------
Confidence               6899999998653211       11   223445565544444444    43332  6777776533211       


Q ss_pred             HHHhCCC-CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          177 FKKVGTY-DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       177 ~~~~~~~-p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                           +. |..-.++.+......+-+.++..+.  +..|++.++
T Consensus       154 -----~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  190 (280)
T 1xkq_A          154 -----QAQPDFLYYAIAKAALDQYTRSTAIDLA--KFGIRVNSV  190 (280)
T ss_dssp             -----SCCCSSHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             -----CCCCcccHHHHHHHHHHHHHHHHHHHhc--cCCeEEEEE
Confidence                 11 2222344443333455666666653  344544433

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.26  E-value=0.00043  Score=62.99  Aligned_cols=150  Identities=20%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhh-------hCCCCE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGMDI  117 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a-------l~~aDi  117 (358)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....     ..   ..+.. .+...+.+++       +...|+
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~-----~~---~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~   90 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPE-----GF---LAVKCDITDTEQVEQAYKEIEETHGPVEV   90 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCT-----TS---EEEECCTTSHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhc-----cc---eEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35899999999999999999999987  8999998652100     00   00000 0000112222       335799


Q ss_pred             EEEcCCCCCCC------CCCHHhHHHHHHHHHHHHHH----HHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          118 VIIPAGVPRKP------GMTRDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       118 VIi~ag~~~~~------g~~r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      +|..||.....      .+.....+..|+.....+++    .+.+. ..+.||+++.-......-            ..-
T Consensus        91 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~------------~~~  157 (253)
T 2nm0_A           91 LIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVVGLLGSA------------GQA  157 (253)
T ss_dssp             EEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCCCCCCHH------------HHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchhhCCCCC------------CcH
Confidence            99999874321      12233455667655444444    44433 356777777654433210            001


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .++.+......+-+.+++.++  +..|++.++.
T Consensus       158 ~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v~  188 (253)
T 2nm0_A          158 NYAASKAGLVGFARSLARELG--SRNITFNVVA  188 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--SSSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--hcCeEEEEEE
Confidence            122333333456677777774  4556655554

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.26  E-value=0.0037  Score=57.24  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CCc--
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTNAVVRGFLG-QQQ--  107 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~d--  107 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++.              ......++....  ..+..+.. -+|  
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            345899999999999999999999997  899999862              111122232221  22322211 122  


Q ss_pred             -HHhhhC-------CCCEEEEcCCCCCCC-CC---CHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 018265          108 -LEDALT-------GMDIVIIPAGVPRKP-GM---TRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (358)
Q Consensus       108 -~~~al~-------~aDiVIi~ag~~~~~-g~---~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  165 (358)
                       .+++++       ..|++|+.||..... ..   .-...+..|+.-...+++.+..+- ..+.||+++.-
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence             222233       789999999975322 11   234456788888888888877664 45677777653

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.26  E-value=0.0011  Score=66.38  Aligned_cols=99  Identities=13%  Similarity=0.162  Sum_probs=62.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc--CC--CCCeEEEEeCCCcHHhhhC---CCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MD--TNAVVRGFLGQQQLEDALT---GMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~--~~--~~~~v~~~~~t~d~~~al~---~aDiVI  119 (358)
                      |||+|||+ |.+|..++..|...|.  +|.++|++...  +.++..  ..  ....+..   ++|++++++   ++|+||
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSK--SEEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKAL   73 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEE
Confidence            78999998 9999999999999887  89999987521  111211  10  0112332   356777666   599999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                      ++...+               ..+.++++.+..+. |+.+||..+|-...
T Consensus        74 laVp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~~  108 (478)
T 1pgj_A           74 ILVQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHFK  108 (478)
T ss_dssp             ECCCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCHH
T ss_pred             EecCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCChH
Confidence            985321               11233334444443 56777777776643

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.26  E-value=0.00048  Score=61.54  Aligned_cols=156  Identities=21%  Similarity=0.208  Sum_probs=83.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDALT------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~------  113 (358)
                      ++|.|+||+|.+|.+++..|+..|.  ++++. +++.  ......++...  ...+..+.. -+   +.+++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999987  78874 6553  12222233221  122322211 12   2333333      


Q ss_pred             -CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                       +.|+||+.||......   .+   ....+..|+.....+.+.+..+   ...+.||++|.....           . +.
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~-----------~-~~  145 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGL-----------I-GN  145 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH-----------H-CC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhc-----------C-CC
Confidence             7899999998754211   11   2334566666544444444332   235677777653211           1 23


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      |..-.++.+......+.+.+++.+.  +..+++.++.
T Consensus       146 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  180 (244)
T 1edo_A          146 IGQANYAAAKAGVIGFSKTAAREGA--SRNINVNVVC  180 (244)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             CCCccchhhHHHHHHHHHHHHHHhh--hcCCEEEEEe
Confidence            3333344444334445666676663  3445544443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.25  E-value=0.0017  Score=60.33  Aligned_cols=158  Identities=16%  Similarity=0.103  Sum_probs=93.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHHHHhcCCCCCeEEEEeC-CCc---HHhh----
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFLG-QQQ---LEDA----  111 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a----  111 (358)
                      .+.+++.|+||+|.+|.+++..|+..|.  ++++.|++..    ......+....  ..+..+.. -+|   .+++    
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~  122 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKA  122 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            4556899999999999999999999997  8999988631    11122222221  22222211 122   1222    


Q ss_pred             ---hCCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 ---LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 ---l~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                         +...|++|+.||.....+    .+   -...+..|+.-...+++.+...- ..+.||+++.-....           
T Consensus       123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~-----------  191 (294)
T 3r3s_A          123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ-----------  191 (294)
T ss_dssp             HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS-----------
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc-----------
Confidence               247899999999743211    12   23456778888888888877654 356777776543221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.+..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       192 -~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  227 (294)
T 3r3s_A          192 -PSPHLLDYAATKAAILNYSRGLAKQVA--EKGIRVNIV  227 (294)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence             233333455554444566777787773  334544433

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.25  E-value=0.0015  Score=59.57  Aligned_cols=155  Identities=15%  Similarity=0.124  Sum_probs=86.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  113 (358)
                      ++|.|+||+|.+|.+++..|+..|.  ++++.+.+.   ......++....  ..+..+.. -+|   .+++++      
T Consensus        27 k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (267)
T 4iiu_A           27 RSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCREVLEHEIAQH  102 (267)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999999987  776665443   222233343321  22222211 122   223333      


Q ss_pred             -CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       ..|++|+.||......   .+   -...+..|+.....+    .+.+.+....+.||+++.....           . +
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~-----------~-~  170 (267)
T 4iiu_A          103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGV-----------M-G  170 (267)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHH-----------H-C
T ss_pred             CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhc-----------c-C
Confidence             7999999998754221   11   233455665544444    4444434556788877653211           1 2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .+..-.++.+......+-+.++..+.  +..|++.++
T Consensus       171 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  205 (267)
T 4iiu_A          171 NRGQVNYSAAKAGIIGATKALAIELA--KRKITVNCI  205 (267)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            34344455554444556777777773  334544333

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.25  E-value=0.0016  Score=59.01  Aligned_cols=157  Identities=15%  Similarity=0.094  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-h--HHHHHhcCCCCCeEEEEeC-CCc---HHhhh-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-G--VTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g--~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++... .  ...++.... ...+..+.. -+|   .++++     
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~   79 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  89999987622 1  122232110 112222211 122   22333     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                        ...|++|+.||......   .+   -...+..|+.    +.+.+.+.+++.. .+.||+++......           
T Consensus        80 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-----------  147 (260)
T 1x1t_A           80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLV-----------  147 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-----------
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECcHHhCc-----------
Confidence              37999999999753211   12   2234555655    4455555555443 46777776543221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.+..-.++.+......+.+.++..++  +..|++.++
T Consensus       148 -~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  183 (260)
T 1x1t_A          148 -ASANKSAYVAAKHGVVGFTKVTALETA--GQGITANAI  183 (260)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHhc--cCCEEEEEE
Confidence             223333344444444456677777764  345554443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.25  E-value=0.00065  Score=56.90  Aligned_cols=73  Identities=12%  Similarity=0.130  Sum_probs=46.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCc---HHhh-hCCCCEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVI  119 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVI  119 (358)
                      .+.++|+|+|+ |.+|..++..|...|.  +++++|.++...  ..+... ....+.. ...++   +.++ ++++|+||
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~-~g~~~~~-~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSE-FSGFTVV-GDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTT-CCSEEEE-SCTTSHHHHHTTTGGGCSEEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhc-CCCcEEE-ecCCCHHHHHHcCcccCCEEE
Confidence            34579999998 9999999999998887  999999875221  112201 1111111 11122   2333 67899999


Q ss_pred             EcCC
Q 018265          120 IPAG  123 (358)
Q Consensus       120 i~ag  123 (358)
                      ++.+
T Consensus        90 ~~~~   93 (155)
T 2g1u_A           90 AFTN   93 (155)
T ss_dssp             ECSS
T ss_pred             EEeC
Confidence            9865

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.25  E-value=0.0011  Score=60.68  Aligned_cols=157  Identities=15%  Similarity=0.107  Sum_probs=87.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  ++++.+++. .  .....++....  ..+..+.. -+|   .++++     
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~  103 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQ  103 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999988  899999855 1  22222333221  22222211 122   22333     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                        .+.|++|+.||......   .+   -...+..|+.    +.+.+.+.+++. ..+.|++++....           . 
T Consensus       104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~-  170 (271)
T 4iin_A          104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS-RFGSVVNVASIIG-----------E-  170 (271)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-
T ss_pred             hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEEEEechhh-----------c-
Confidence              37999999999754321   11   2234455554    444455555544 3466777654221           1 


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+.+..-.++.+......+-+.++..++  +..|++..+.
T Consensus       171 ~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v~  208 (271)
T 4iin_A          171 RGNMGQTNYSASKGGMIAMSKSFAYEGA--LRNIRFNSVT  208 (271)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             CCCCCchHhHHHHHHHHHHHHHHHHHHH--HhCcEEEEEE
Confidence            1344444555554444556677777764  3345444443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.24  E-value=0.0019  Score=64.63  Aligned_cols=99  Identities=17%  Similarity=0.176  Sum_probs=62.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-CCCCCeEEEEeCCCcHHhhh---CCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTNAVVRGFLGQQQLEDAL---TGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~~al---~~aDiVIi~a  122 (358)
                      |||+|||+ |.+|..++..|...|.  +|.++|++...  +.++.. ......+..   ++|+++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            68999998 9999999999999887  89999987622  122222 100012322   35677765   5999999985


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                      ..+               ..+.++++.+..+. |+.+||..+|-...
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~~  106 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYR  106 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCHH
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCHH
Confidence            321               12233334444443 56777777776543

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.24  E-value=0.001  Score=59.99  Aligned_cols=155  Identities=18%  Similarity=0.203  Sum_probs=89.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  113 (358)
                      +++.|+||+|.+|.+++..|+..|.  ++++.|.+.   ......++....  ..+..+.. -+|   .+++++      
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999997  888888754   222233343321  22222211 122   223333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 -GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       ..|++|+.||.....   ..+.   ...+..|+.....+.+.    +.+. ..+.||+++.-..           .. +
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~-----------~~-~  147 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSVVG-----------AV-G  147 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HH-C
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhh-----------cC-C
Confidence             789999999975321   1122   23455666544444444    4544 3566777654221           11 3


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.++.+......+-+.+|..++  +..|++.++.
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v~  183 (246)
T 3osu_A          148 NPGQANYVATKAGVIGLTKSAARELA--SRGITVNAVA  183 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            44444556655555567777888774  3456555554

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.24  E-value=0.0038  Score=57.51  Aligned_cols=158  Identities=15%  Similarity=0.097  Sum_probs=85.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-ch--hHHHHHhcCCCCCeEEEEeC-CCc-------HHhh--
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP--GVTADISHMDTNAVVRGFLG-QQQ-------LEDA--  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~--g~~~dl~~~~~~~~v~~~~~-t~d-------~~~a--  111 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  .|+++|++. ..  ....++.... ...+..+.. -+|       .+++  
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~v~~~~~   98 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELNKER-SNTAVVCQADLTNSNVLPASCEEIIN   98 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhhc-CCceEEEEeecCCccCCHHHHHHHHH
Confidence            445899999999999999999999887  899999875 22  2222332110 112222211 122       2222  


Q ss_pred             -----hCCCCEEEEcCCCCCCC--------C-----CC---HHhHHHHHHHHHHHHHHHHHhh----CC-----CeEEEE
Q 018265          112 -----LTGMDIVIIPAGVPRKP--------G-----MT---RDDLFNINAGIVKTLCEGIAKC----CP-----KAIVNL  161 (358)
Q Consensus       112 -----l~~aDiVIi~ag~~~~~--------g-----~~---r~~~~~~N~~i~~~i~~~i~~~----~p-----~a~viv  161 (358)
                           +...|++|+.||.....        .     .+   -...+..|+.....+++.+..+    .+     .+.||+
T Consensus        99 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~  178 (288)
T 2x9g_A           99 SCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVN  178 (288)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEE
T ss_pred             HHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEE
Confidence                 23789999999864321        1     11   1223455655444444444332    21     467777


Q ss_pred             ecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       162 ~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ++......            +.+..-.|+.+......+-+.++..++  +..|++.++
T Consensus       179 isS~~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  222 (288)
T 2x9g_A          179 LCDAMVDQ------------PCMAFSLYNMGKHALVGLTQSAALELA--PYGIRVNGV  222 (288)
T ss_dssp             ECCTTTTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             EecccccC------------CCCCCchHHHHHHHHHHHHHHHHHHhh--ccCeEEEEE
Confidence            76544221            223333344444444456677777763  334544443

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.24  E-value=0.0018  Score=58.14  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~----  113 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|+ +.  ......++....  ..+..+.. -+|   .+++++    
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   78 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVD   78 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999988 43  222223333221  12222211 122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 ---GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                         +.|++|+.||......   .+   -...+..|+..    .+.+.+.+++.. .+.||+++.-...           .
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~-----------~  146 (246)
T 2uvd_A           79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIASVVGV-----------T  146 (246)
T ss_dssp             HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHH-----------H
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCHHhc-----------C
Confidence               7999999999753211   12   22345566555    555556565543 4677776653211           1


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.|..-.++.+......+-+.+++.+.  +..|++.++-
T Consensus       147 -~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v~  183 (246)
T 2uvd_A          147 -GNPGQANYVAAKAGVIGLTKTSAKELA--SRNITVNAIA  183 (246)
T ss_dssp             -CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEEEEEE
Confidence             233333344443333445666777663  3455554443

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.23  E-value=0.0011  Score=60.62  Aligned_cols=155  Identities=11%  Similarity=0.049  Sum_probs=86.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhh-------CCCCE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL-------TGMDI  117 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~aDi  117 (358)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.... ..++..... ..+.. .+...+.++++       ...|+
T Consensus        27 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           27 SAPILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAGA-VALYGDFSCETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHTC-EEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcCC-eEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            35799999999999999999999987  899999876221 111221110 00110 00001122222       37899


Q ss_pred             EEEcCCCCCCCC--CCH---HhHHHHHHHHHHHHHH----HHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 018265          118 VIIPAGVPRKPG--MTR---DDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (358)
Q Consensus       118 VIi~ag~~~~~g--~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kv  188 (358)
                      +|+.||......  .+.   ...+..|+.....+++    .+++. ..+.||+++......            +.+..-.
T Consensus       103 lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~------------~~~~~~~  169 (260)
T 3gem_A          103 VVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTAS-EVADIVHISDDVTRK------------GSSKHIA  169 (260)
T ss_dssp             EEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGGT------------CCSSCHH
T ss_pred             EEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEECChhhcC------------CCCCcHh
Confidence            999999653322  221   2345566554444444    44432 346777776533211            2333334


Q ss_pred             EEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      |+.+......+-+.+|..++-   .|++.++.
T Consensus       170 Y~asKaa~~~l~~~la~e~~~---~Irvn~v~  198 (260)
T 3gem_A          170 YCATKAGLESLTLSFAARFAP---LVKVNGIA  198 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT---TCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCC---CCEEEEEe
Confidence            555544455677888888863   36655554

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.22  E-value=0.00048  Score=62.22  Aligned_cols=147  Identities=16%  Similarity=0.184  Sum_probs=81.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h---HHHHHhcCCCCCeEEEEeCCCcHHhh-------h
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G---VTADISHMDTNAVVRGFLGQQQLEDA-------L  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g---~~~dl~~~~~~~~v~~~~~t~d~~~a-------l  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++...  .   ...|+.+            ..+.+++       +
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D~~~------------~~~~~~~~~~~~~~~   79 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTD------------SDAVDRAFTAVEEHQ   79 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTC------------HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHhcCeeccCCC------------HHHHHHHHHHHHHHc
Confidence            345899999999999999999999987  89999987511  1   0011111            0112222       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ...|++|+.+|.....   ..+   ....+..|+.....+++.    +++. ..+.||+++......            +
T Consensus        80 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~  146 (247)
T 1uzm_A           80 GPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSGLW------------G  146 (247)
T ss_dssp             SSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC---------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEECCHhhcc------------C
Confidence            4679999999875321   112   233455665554444444    4333 356777777654322            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.++.+......+-+.+++.++  +..|++.++-
T Consensus       147 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  182 (247)
T 1uzm_A          147 IGNQANYAASKAGVIGMARSIARELS--KANVTANVVA  182 (247)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhh--hcCcEEEEEE
Confidence            22222344444334456677777763  3445544443

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.22  E-value=0.0003  Score=64.03  Aligned_cols=93  Identities=15%  Similarity=0.169  Sum_probs=59.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||+|||+ |.+|+.++..|...+. .++.++|++...  ...+... .  .+...   .++.+++ ++|+||++.. + 
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~r~~~~--~~~~~~~-~--g~~~~---~~~~~~~-~~D~vi~~v~-~-   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEK--RERLEKE-L--GVETS---ATLPELH-SDDVLILAVK-P-   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHH--HHHHHHH-T--CCEEE---SSCCCCC-TTSEEEECSC-H-
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCC-CeEEEECCCHHH--HHHHHHh-c--CCEEe---CCHHHHh-cCCEEEEEeC-c-
Confidence            69999998 9999999999988772 289999987521  1222211 0  12221   3455778 9999999853 1 


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                                    ..+.++++.+.. . +.+|+.++|....
T Consensus        68 --------------~~~~~v~~~l~~-~-~~ivv~~~~g~~~   93 (263)
T 1yqg_A           68 --------------QDMEAACKNIRT-N-GALVLSVAAGLSV   93 (263)
T ss_dssp             --------------HHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred             --------------hhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence                          123444444543 2 6667666676654

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.21  E-value=0.00074  Score=61.10  Aligned_cols=152  Identities=16%  Similarity=0.173  Sum_probs=85.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------C
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------T  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~  113 (358)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++.     ..+..+. .-+|   .++++       .
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3789999999999999999999987  8999998752  22222222     1122111 1122   22333       2


Q ss_pred             CCCEEEEcCCCCC--CC--CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 GMDIVIIPAGVPR--KP--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 ~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ..|++|+.||...  .+  ..+   -...+..|+..    .+.+.+.+.+. ..+.||++|.-....            +
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~------------~  140 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGSTAGSW------------P  140 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTS------------C
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEccchhcc------------C
Confidence            6899999999753  11  112   22345556544    44555555444 346777776543221            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.|+.+......+-+.++..++  +..|++.++-
T Consensus       141 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v~  176 (248)
T 3asu_A          141 YAGGNVYGATKAFVRQFSLNLRTDLH--GTAVRVTDIE  176 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence            33333444544444456677777764  4556555443

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.20  E-value=0.00088  Score=60.92  Aligned_cols=157  Identities=13%  Similarity=0.140  Sum_probs=89.7

Q ss_pred             CCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC----
Q 018265           45 PGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~----  113 (358)
                      +.++|.|+||+  |.+|.+++..|+..|.  +|+++|++.. .....++......  +..+. .-+|   .+++++    
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~   82 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGG--ALLFRADVTQDEELDALFAGVKE   82 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--cEEEECCCCCHHHHHHHHHHHHH
Confidence            34589999998  8999999999999887  8999998752 2222333221011  11111 1122   223333    


Q ss_pred             ---CCCEEEEcCCCCCC-----C--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHH
Q 018265          114 ---GMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                         ..|++|+.||....     +  ..+   -...+..|+.....+++.+..+- ..+.||++|.-....          
T Consensus        83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------  152 (261)
T 2wyu_A           83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----------  152 (261)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS----------
T ss_pred             HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC----------
Confidence               67999999997532     1  112   23456778877777777776542 236777776432111          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                        +.|..-.++.+......+-+.++..++  +..|++.++
T Consensus       153 --~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  188 (261)
T 2wyu_A          153 --VVPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAI  188 (261)
T ss_dssp             --BCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             --CCCCchHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence              223333344544444556677777763  344544443

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.20  E-value=0.0026  Score=57.41  Aligned_cols=153  Identities=14%  Similarity=0.087  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEE-eCCCcHHh---hhCCCCE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF-LGQQQLED---ALTGMDI  117 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~~---al~~aDi  117 (358)
                      ...+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ....++.      .+..+ .-..+.++   .+.+.|+
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~--~~~~~~~------~~~~~~D~~~~~~~~~~~~~~iD~   84 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNE--ELLKRSG------HRYVVCDLRKDLDLLFEKVKEVDI   84 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH--HHHHHTC------SEEEECCTTTCHHHHHHHSCCCSE
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH--HHHHhhC------CeEEEeeHHHHHHHHHHHhcCCCE
Confidence            445567999999999999999999999987  899999864  1111121      11111 00123333   3348999


Q ss_pred             EEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          118 VIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      ||+.||......   .+   -...+..|+.    +.+.+.+.+++.. .+.||++|.-....            +.+..-
T Consensus        85 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~~~~~~  151 (249)
T 1o5i_A           85 LVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSFSVIS------------PIENLY  151 (249)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------CCTTBH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcchHhcC------------CCCCCc
Confidence            999998653211   11   1233445543    3555566665543 46777766533211            222222


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .++.+......+.+.++..++  +..|++.++
T Consensus       152 ~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  181 (249)
T 1o5i_A          152 TSNSARMALTGFLKTLSFEVA--PYGITVNCV  181 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            333333333456666777663  334444333

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.20  E-value=0.0038  Score=56.81  Aligned_cols=160  Identities=13%  Similarity=0.034  Sum_probs=88.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcH---Hhh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL---EDA-------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------  111 (358)
                      +..++.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++........+..+. .-+|.   +++       
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999987  899999876  222333443311111222221 11222   222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      +...|++|+.||.....   ..+   -...+..|+.....+++.+..+   ...+.||+++......            +
T Consensus        85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~  152 (265)
T 3lf2_A           85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ------------P  152 (265)
T ss_dssp             HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS------------C
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC------------C
Confidence            23679999999974321   122   2334566766555555554332   2356777766433221            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.++.+......+-+.+|..++  +..|++..+-
T Consensus       153 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  188 (265)
T 3lf2_A          153 EPHMVATSAARAGVKNLVRSMAFEFA--PKGVRVNGIL  188 (265)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            23223334443333456677777774  3445544443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.20  E-value=0.001  Score=61.15  Aligned_cols=157  Identities=17%  Similarity=0.225  Sum_probs=88.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  112 (358)
                      +.+.+.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++.....  .+..+. .-+|   .++++      
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKE  102 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  899999876  2222233332111  111111 1122   22233      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHH----HHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.||.....   ..+   -...+..|+.-...+++    .+.+. ..+.||+++.-..           . .
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~-~  169 (270)
T 3ftp_A          103 FGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITSVVG-----------S-A  169 (270)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-H
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhh-----------C-C
Confidence             3789999999975321   112   22345566655444444    44433 4577777764221           1 1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|..-.++.+......+-+.+|..++  +..|++.++-
T Consensus       170 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  206 (270)
T 3ftp_A          170 GNPGQVNYAAAKAGVAGMTRALAREIG--SRGITVNCVA  206 (270)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEEE
Confidence            334444455554444556777787774  3445544443

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.0034  Score=58.13  Aligned_cols=161  Identities=15%  Similarity=0.109  Sum_probs=89.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCcHHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~----  113 (358)
                      +.+++.|+||+|.+|.+++..|+..|. ...|++.|++.  ......++........+..+..    ..+.+++++    
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999987653 23889999876  2223333332111122322211    123333333    


Q ss_pred             ---CCCEEEEcCCCCCCC----CCC---HHhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          114 ---GMDIVIIPAGVPRKP----GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       114 ---~aDiVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                         ..|++|..||.....    ..+   -...+..|+.....    +.+.+++. ..+.||+++.-....          
T Consensus       112 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~~----------  180 (287)
T 3rku_A          112 EFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK-NSGDIVNLGSIAGRD----------  180 (287)
T ss_dssp             GGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTS----------
T ss_pred             hcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEECChhhcC----------
Confidence               689999999964321    112   22345556554444    44444444 356777776533221          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                        +.|..-.|+.+......|-+.+|..++  +..|++..+-
T Consensus       181 --~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v~  217 (287)
T 3rku_A          181 --AYPTGSIYCASKFAVGAFTDSLRKELI--NTKIRVILIA  217 (287)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEEEEEE
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEEEEEe
Confidence              233334455554444567778888874  4556554443

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.19  E-value=0.00076  Score=61.79  Aligned_cols=154  Identities=20%  Similarity=0.295  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|++++..|+..|.  .|++.|++..  .....++.     ..+..+.. -+|   .++++      
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAERE   98 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  8999998752  22222221     12222111 122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ...|++|+.||.....   ..+   -...+..|+..    .+.+.+.+.+. ..+.||+++.-....            
T Consensus        99 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~Iv~isS~~~~~------------  165 (266)
T 3grp_A           99 MEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR-RYGRIINITSIVGVV------------  165 (266)
T ss_dssp             HTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC----------------
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEECCHHHcC------------
Confidence             3789999999975321   111   22345566655    55566666554 346777776544222            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.++.+......+-+.+|..++  +..|++.++-
T Consensus       166 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~vn~v~  202 (266)
T 3grp_A          166 GNPGQTNYCAAKAGLIGFSKALAQEIA--SRNITVNCIA  202 (266)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            122222344444344456677777774  3445544443

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.19  E-value=0.0037  Score=56.95  Aligned_cols=158  Identities=14%  Similarity=0.112  Sum_probs=92.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh---
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL---  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al---  112 (358)
                      +...+.|+||+|.+|.+++..|+..|.  .++++|+..     ......++...  ...+..+.. -+|   .++++   
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   85 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFDFA   85 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            445899999999999999999999987  899988643     12223334332  123333211 122   22233   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 ----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 ----~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                          ...|++|+.||......   .+   -...+..|+.....+++.+..+- +.+.|++++......            
T Consensus        86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~------------  153 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA------------  153 (262)
T ss_dssp             HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH------------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc------------
Confidence                37899999999753221   12   23345678877777777776542 356777776543111            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.|+.+......+-+.+|..++  +..|++..+-
T Consensus       154 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  190 (262)
T 3ksu_A          154 YTGFYSTYAGNKAPVEHYTRAASKELM--KQQISVNAIA  190 (262)
T ss_dssp             HHCCCCC-----CHHHHHHHHHHHHTT--TTTCEEEEEE
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEEe
Confidence            123334577776666678888998885  4456554443

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.17  E-value=0.0023  Score=57.98  Aligned_cols=156  Identities=15%  Similarity=0.156  Sum_probs=86.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch----hHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-----
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~----g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (358)
                      +++.|+||+|.+|.+++..|+..|.  +|+++|++...    ....++....  ..+..+.. -+|   .+++++     
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999887  89999986522    1122333221  22322211 122   223333     


Q ss_pred             --CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        ..|++|+.||......   .+   -...+..|+..    .+.+.+.+++....+.||+++.-....            
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------  146 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ------------  146 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS------------
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc------------
Confidence              7899999998753211   12   22345556554    444455554444336777776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|..-.++.+......+-+.++..++  +..|++.++.
T Consensus       147 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v~  183 (258)
T 3a28_C          147 GFPILSAYSTTKFAVRGLTQAAAQELA--PKGHTVNAYA  183 (258)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHH--hhCeEEEEEE
Confidence            223333344444334456677777764  3455554444

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.17  E-value=0.00026  Score=65.45  Aligned_cols=74  Identities=20%  Similarity=0.175  Sum_probs=50.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHH---HHHhcCCCCCeEEEEeC----CCcHHhhhCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVT---ADISHMDTNAVVRGFLG----QQQLEDALTG  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~----~g~~---~dl~~~~~~~~v~~~~~----t~d~~~al~~  114 (358)
                      ++||+|+||+|++|++++..|+..|.  +++.++++..    ....   .++...    .+..+.+    ..++.+++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~----~v~~v~~D~~d~~~l~~~~~~   77 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKAS----GANIVHGSIDDHASLVEAVKN   77 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTT----TCEEECCCTTCHHHHHHHHHT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhC----CCEEEEeccCCHHHHHHHHcC
Confidence            46899999999999999999999886  8888888641    1111   122221    1222111    1246678899


Q ss_pred             CCEEEEcCCCC
Q 018265          115 MDIVIIPAGVP  125 (358)
Q Consensus       115 aDiVIi~ag~~  125 (358)
                      +|+||++++..
T Consensus        78 ~d~vi~~a~~~   88 (308)
T 1qyc_A           78 VDVVISTVGSL   88 (308)
T ss_dssp             CSEEEECCCGG
T ss_pred             CCEEEECCcch
Confidence            99999998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.17  E-value=0.0012  Score=54.39  Aligned_cols=98  Identities=11%  Similarity=0.072  Sum_probs=60.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcH---Hh-hhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---ED-ALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~-al~~aDiVIi~  121 (358)
                      ..+|+|+|+ |.+|..++..|...|.  +++++|.++.  ....+.+... ..+.+  ..++.   ++ .+.+||+||++
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~--~~~~~~~~g~-~~i~g--d~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRT--RVDELRERGV-RAVLG--NAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHH--HHHHHHHTTC-EEEES--CTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHH--HHHHHHHcCC-CEEEC--CCCCHHHHHhcCcccCCEEEEE
Confidence            358999998 9999999999999887  9999999752  1222222111 11111  11222   22 25789999998


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCC
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPV  166 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~  166 (358)
                      .+..           ..|..    ++..+++..|+..++.-. +|.
T Consensus        79 ~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~~~~  109 (140)
T 3fwz_A           79 IPNG-----------YEAGE----IVASARAKNPDIEIIARAHYDD  109 (140)
T ss_dssp             CSCH-----------HHHHH----HHHHHHHHCSSSEEEEEESSHH
T ss_pred             CCCh-----------HHHHH----HHHHHHHHCCCCeEEEEECCHH
Confidence            5421           33433    334566667887766554 443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.17  E-value=0.003  Score=59.34  Aligned_cols=155  Identities=14%  Similarity=0.156  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CCc--
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTNAVVRGFLG-QQQ--  107 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~d--  107 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +++++|++.              ......++...  ...+..+.. -+|  
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~  120 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLA  120 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence            445899999999999999999999998  999999762              11111222221  122222211 122  


Q ss_pred             -HHhhh-------CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCcc
Q 018265          108 -LEDAL-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNST  169 (358)
Q Consensus       108 -~~~al-------~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~  169 (358)
                       .++++       ...|++|+.||.....   ..+   -...+..|+.    +.+.+.+.+.+....+.||+++......
T Consensus       121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~  200 (317)
T 3oec_A          121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR  200 (317)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence             22223       3789999999975321   122   2234455654    4445555555555567788876544322


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceE
Q 018265          170 VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (358)
Q Consensus       170 t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~  217 (358)
                                  +.|..-.|+.+......|-+.+|..++  +..|++.
T Consensus       201 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn  234 (317)
T 3oec_A          201 ------------GAPGQSHYAASKHGVQGLMLSLANEVG--RHNIRVN  234 (317)
T ss_dssp             ------------CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             ------------CCCCCcchHHHHHHHHHHHHHHHHHHh--hcCeEEE
Confidence                        233333444444444556777787773  3345443

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.16  E-value=0.0027  Score=58.43  Aligned_cols=160  Identities=11%  Similarity=0.104  Sum_probs=89.9

Q ss_pred             CCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcC-CCCCeEEE-EeCCCcHHhhh-------
Q 018265           45 PGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVRG-FLGQQQLEDAL-------  112 (358)
Q Consensus        45 ~~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~-~~~~~v~~-~~~t~d~~~al-------  112 (358)
                      +.++|.|+||+  |.+|.+++..|+..|.  +|+++|++.. .....++... .....+.. .+...+.++++       
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENW   97 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34589999998  8999999999999987  8999998752 2222333221 11011111 00011222333       


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCC---HHhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      ...|++|+.||....     +  ..+   -...+..|+.....+++.+..+-  ..+.||++|.-....           
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~-----------  166 (285)
T 2p91_A           98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK-----------  166 (285)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS-----------
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc-----------
Confidence            378999999997532     1  112   23456778777777777766542  246777776532111           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.|..-.++.+......+-+.++..++  +..|++.++-
T Consensus       167 -~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  203 (285)
T 2p91_A          167 -VVPHYNVMGIAKAALESTVRYLAYDIA--KHGHRINAIS  203 (285)
T ss_dssp             -BCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEEE
T ss_pred             -CCCCccHHHHHHHHHHHHHHHHHHHhc--ccCcEEEEEE
Confidence             223333455554444556677777763  3445544443

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.16  E-value=0.0023  Score=58.15  Aligned_cols=158  Identities=15%  Similarity=0.118  Sum_probs=92.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~----  113 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  .+++. +.+.  ......++....  ..+..+. .-+|   .+++++    
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  88888 4443  222233343322  1222211 1122   223333    


Q ss_pred             ---CCCEEEEcCCCCC--CC--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 ---GMDIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 ---~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                         ..|++|+.||...  .+  ..+   -...+..|+.....+++.+..+- +.+.||+++....           ...+
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~-----------~~~~  151 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG-----------RDGG  151 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH-----------HHCC
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHh-----------ccCC
Confidence               7899999998542  21  122   23456778877777777776553 2456777654321           1113


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+..-.|+.+......+-+.+|..++-  . |++..+.
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~~--~-I~vn~v~  186 (259)
T 3edm_A          152 GPGALAYATSKGAVMTFTRGLAKEVGP--K-IRVNAVC  186 (259)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHTT--T-CEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHCC--C-CEEEEEE
Confidence            343344555554455677888888853  3 6655544

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.16  E-value=0.0018  Score=59.32  Aligned_cols=158  Identities=14%  Similarity=0.124  Sum_probs=90.3

Q ss_pred             CCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCc---HHhhhC-----
Q 018265           45 PGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQ---LEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d---~~~al~-----  113 (358)
                      +.++|.|+||+  |.+|.+++..|+..|.  +|+++|++.. .....++............ .-+|   .+++++     
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYEL-DVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEc-CCCCHHHHHHHHHHHHHH
Confidence            34589999998  8999999999999987  8999998762 2222333221000111111 1122   222332     


Q ss_pred             --CCCEEEEcCCCCCC-----C--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          114 --GMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 --~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                        ..|++|+.||....     +  ..+   -...+..|+.....+++.+..+- +.+.||+++.-....           
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------  150 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK-----------  150 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC-----------
Confidence              67999999997532     1  112   23456778877777777776542 236777776532111           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                       +.|..-.|+.+......+-+.++..++  +..|++..+
T Consensus       151 -~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  186 (275)
T 2pd4_A          151 -YMAHYNVMGLAKAALESAVRYLAVDLG--KHHIRVNAL  186 (275)
T ss_dssp             -BCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             -CCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence             223333344544444556677777763  344554444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.16  E-value=0.0011  Score=54.31  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=45.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcH---Hh-hhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---ED-ALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~-al~~aDiVIi~  121 (358)
                      +++|+|+|+ |.+|+.++..|...|.  +++++|.++.  ...++.+... ..+.+  ..+|.   ++ .+.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~--~~~~~~~~~~-~~~~g--d~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKE--KIELLEDEGF-DAVIA--DPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHH--HHHHHHHTTC-EEEEC--CTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHH--HHHHHHHCCC-cEEEC--CCCCHHHHHhCCcccCCEEEEe
Confidence            458999998 9999999999999887  9999998752  1222222111 11111  11232   12 14689999998


Q ss_pred             CC
Q 018265          122 AG  123 (358)
Q Consensus       122 ag  123 (358)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.16  E-value=0.0014  Score=59.59  Aligned_cols=156  Identities=17%  Similarity=0.163  Sum_probs=86.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      .++|.|+||+|.+|.+++..|+..|.  ++++. +.+.  ......++....  ..+..+.. -+|   .++++      
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999987  88886 5554  222333444322  22332211 122   22333      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CCH---HhHHHHHHHHHHHHHH----HHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       ..-|++|+.||......   .+.   ...+..|+.....+++    .+++. ..+.||+++.-....            
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~------------  146 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSISSLGSIR------------  146 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEEEGGGTS------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhCC------------
Confidence             35699999998643211   121   2245566554444444    44433 356777776433211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.++.+......+-+.+|..++  +..|++..+-
T Consensus       147 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  183 (258)
T 3oid_A          147 YLENYTTVGVSKAALEALTRYLAVELS--PKQIIVNAVS  183 (258)
T ss_dssp             BCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            233333445554444567777888774  4455554443

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.0024  Score=57.77  Aligned_cols=157  Identities=14%  Similarity=0.137  Sum_probs=84.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEe-CCCc---HHhhh------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFL-GQQQ---LEDAL------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~-~t~d---~~~al------  112 (358)
                      .+++.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++...... ..+..+. .-+|   .++++      
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999887  899999876  22222333221100 1222211 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC--CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 -TGMDIVIIPAGVPRKP--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       ...|++|+.||.....  ..+   -...+..|+..    .+.+.+.+++. ..+.|++++......            +
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~  151 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVASRAAKY------------G  151 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC------------------
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEccHHhcC------------C
Confidence             3689999999974322  111   12334556544    44444444443 357777776644222            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .++.-.|+.+......+-+.+|..++  +..|++..+
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  186 (250)
T 3nyw_A          152 FADGGIYGSTKFALLGLAESLYRELA--PLGIRVTTL  186 (250)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            22233455554444556777777774  334544333

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.15  E-value=0.0038  Score=57.71  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~   82 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  .|+++| ++.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            345899999999999999999999987  899999 765

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.15  E-value=0.0016  Score=58.78  Aligned_cols=151  Identities=18%  Similarity=0.152  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe--CCCcHHhhh-------CCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQQQLEDAL-------TGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al-------~~a  115 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++...      ...  ........  ...+.++++       ...
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~------~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   75 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQ------EQY--PFATEVMDVADAAQVAQVCQRLLAETERL   75 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCS------SCC--SSEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhh------hcC--CceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            345899999999999999999999987  89999987521      100  00100000  001223333       378


Q ss_pred             CEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       116 DiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |++|+.+|.....   ..+   -...+..|+.....+    .+.+++.. .+.||+++.-....            +.|.
T Consensus        76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~------------~~~~  142 (250)
T 2fwm_X           76 DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVASDAAHT------------PRIG  142 (250)
T ss_dssp             CEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS------------CCTT
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECchhhCC------------CCCC
Confidence            9999999874321   112   223455565544444    44445443 45677766433211            2233


Q ss_pred             CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .-.++.+......+-+.++..+.  +..|++.++-
T Consensus       143 ~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  175 (250)
T 2fwm_X          143 MSAYGASKAALKSLALSVGLELA--GSGVRCNVVS  175 (250)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHhC--ccCCEEEEEE
Confidence            33344444444556677777663  3445544443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.15  E-value=0.00074  Score=61.37  Aligned_cols=67  Identities=16%  Similarity=0.265  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++|||+|||+ |.+|..++..|...+.  ++.++|++...  ..++.+.. .  +.   .++|++++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~--~~~~~~~~-g--~~---~~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL-A--LP---YAMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH-T--CC---BCSSHHHHHHTCSEEEECS
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHHc-C--CE---eeCCHHHHHhcCCEEEEEe
Confidence            4579999998 9999999999988775  89999987521  11222100 0  11   1346778889999999985

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0026  Score=63.81  Aligned_cols=100  Identities=14%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-CCCCCeEEEEeCCCcHHhhhCC---CCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTNAVVRGFLGQQQLEDALTG---MDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~~al~~---aDiVIi~  121 (358)
                      ..||+|||+ |.+|.+++..|+..|.  +|.++|++...  +.++.. ......+.   .+.|+++++++   +|+||++
T Consensus        10 ~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~~gi~---~~~s~~e~v~~l~~aDvVil~   81 (497)
T 2p4q_A           10 SADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSK--VDHFLANEAKGKSII---GATSIEDFISKLKRPRKVMLL   81 (497)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHH--HHHHHHTTTTTSSEE---CCSSHHHHHHTSCSSCEEEEC
T ss_pred             CCCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHcccccCCCeE---EeCCHHHHHhcCCCCCEEEEE
Confidence            358999998 9999999999999998  89999987622  222322 10001232   24577787776   9999998


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                      ...+               ..++++++.+..+. |+.+||..+|-...
T Consensus        82 Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~~  114 (497)
T 2p4q_A           82 VKAG---------------APVDALINQIVPLLEKGDIIIDGGNSHFP  114 (497)
T ss_dssp             CCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred             cCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCChh
Confidence            5321               12444556666555 56777777776543

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.14  E-value=0.0016  Score=58.72  Aligned_cols=118  Identities=14%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|++..  .....++.... ...+..+.. -+|   +++++      
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDAD   89 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999886  8999998652  22222332110 112222211 122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCC
Q 018265          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNP  165 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  165 (358)
                       ...|+||+.||......   .+   -...+..|+.....+++.    +.+....+.||++|..
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  153 (265)
T 1h5q_A           90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSM  153 (265)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCc
Confidence             34899999998753211   11   223355666544444444    4433334677776653

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.14  E-value=0.00025  Score=64.21  Aligned_cols=157  Identities=18%  Similarity=0.215  Sum_probs=87.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEE-EeCCCcHHhhh-------CC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRG-FLGQQQLEDAL-------TG  114 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~  114 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++....  ..+.. .+...+.++++       ..
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNG--KGMALNVTNPESIEAVLKAITDEFGG   83 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE--EEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc--eEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            345899999999999999999999997  899999876  222222232210  00110 00011222333       37


Q ss_pred             CCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      .|++|+.||......   .+   -...+..|+.-...    ..+.+.+. ..+.|++++.-..           .. +.|
T Consensus        84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~-----------~~-~~~  150 (248)
T 3op4_A           84 VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVGSVVG-----------TM-GNA  150 (248)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HH-CCT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhh-----------cC-CCC
Confidence            999999999754221   12   22345556554444    44444443 3567777664221           11 344


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..-.|+.+......+-+.+|..++  +..|++..+-
T Consensus       151 ~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v~  184 (248)
T 3op4_A          151 GQANYAAAKAGVIGFTKSMAREVA--SRGVTVNTVA  184 (248)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHH--HhCeEEEEEe
Confidence            444455554444557777888774  3455554443

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.0021  Score=59.36  Aligned_cols=157  Identities=18%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-------
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  112 (358)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++...  ...+..+.. -+|   .++++       
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999997  899999876  22333344322  122222211 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      ...|++|+.||.....+    .+   -...+..|+.-...    ..+.+.+. ..+.|++++......           .
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~-----------~  151 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSFVGHT-----------A  151 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCSBTTT-----------B
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcChhhCc-----------C
Confidence            37899999999642211    12   22344556544444    44444433 356777776544321           1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +++..-.|+.+......+-+.+|..++  +..|++.++-
T Consensus       152 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v~  188 (280)
T 3tox_A          152 GFAGVAPYAASKAGLIGLVQALAVELG--ARGIRVNALL  188 (280)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEEE
Confidence            233333445544444556677777774  3445554444

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.13  E-value=0.0037  Score=55.90  Aligned_cols=150  Identities=13%  Similarity=0.148  Sum_probs=82.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHh-------hhCCCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLED-------ALTGMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~-------al~~aDiV  118 (358)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++|++... ...++. .   ..+.. .+. .+.++       .+.+.|++
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-~---~~~~~D~~~-~~~~~~~~~~~~~~g~id~l   74 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-A---VPLPTDLEK-DDPKGLVKRALEALGGLHVL   74 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-C---EEEECCTTT-SCHHHHHHHHHHHHTSCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-c---EEEecCCch-HHHHHHHHHHHHHcCCCCEE
Confidence            4799999999999999999999987  89999987622 222221 1   00100 001 12222       24589999


Q ss_pred             EEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC--CCC
Q 018265          119 IIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY--DPK  186 (358)
Q Consensus       119 Ii~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~--p~~  186 (358)
                      |+.+|.....   ..+   -...+..|+..    .+.+.+.+++.. .+.||+++......            +.  +..
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~~~~~~~  141 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGSVTTFT------------AGGPVPI  141 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------CCTTSCC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhcc------------CCCCCCC
Confidence            9999864321   112   22334455544    444444444443 46777776543221            11  222


Q ss_pred             cEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      -.++.+......+-+.+++.+.  +..|++.++
T Consensus       142 ~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  172 (239)
T 2ekp_A          142 PAYTTAKTALLGLTRALAKEWA--RLGIRVNLL  172 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            3344444444456677777763  334444333

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.12  E-value=0.0046  Score=54.90  Aligned_cols=77  Identities=18%  Similarity=0.188  Sum_probs=49.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---cHHhhhC-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQ---QLEDALT-------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-------  113 (358)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++.... ...+..+.. -+   +.+++++       
T Consensus         3 k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999997  899999875  222233332111 112222111 12   2233333       


Q ss_pred             CCCEEEEcCCCCC
Q 018265          114 GMDIVIIPAGVPR  126 (358)
Q Consensus       114 ~aDiVIi~ag~~~  126 (358)
                      ..|++|+.||...
T Consensus        80 ~id~li~~Ag~~~   92 (235)
T 3l77_A           80 DVDVVVANAGLGY   92 (235)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             CCCEEEECCcccc
Confidence            7899999999753

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.12  E-value=0.0018  Score=61.70  Aligned_cols=63  Identities=16%  Similarity=0.276  Sum_probs=47.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|+.++..+...|.  +|..+|++.....       .    ...   ..++++++++||+|++..
T Consensus       161 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~-------g----~~~---~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          161 KFSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT-------N----YTY---YGSVVELASNSDILVVAC  223 (333)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC-------C----SEE---ESCHHHHHHTCSEEEECS
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc-------C----cee---cCCHHHHHhcCCEEEEec
Confidence            344568999998 9999999999988776  8999998652110       1    111   246788899999999985

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.11  E-value=0.0023  Score=60.91  Aligned_cols=66  Identities=21%  Similarity=0.267  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +.+||+|||+ |.+|.+++..|...|.  +++++|.+....... .....    +..   + ++++++++||+||++.
T Consensus        15 ~~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~~-a~~~G----~~~---~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           15 QGKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAK-AEAHG----LKV---A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             HTSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHH-HHHTT----CEE---E-CHHHHHHTCSEEEECS
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHHHH-HHHCC----CEE---c-cHHHHHhcCCEEEEeC
Confidence            3568999998 9999999999998886  889999875221111 11111    122   1 5678899999999984

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.11  E-value=0.0011  Score=60.61  Aligned_cols=152  Identities=16%  Similarity=0.117  Sum_probs=85.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------CC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~  114 (358)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++...     +..... ..+..+. .-+|   .++++       ..
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~-----~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVER-----LKALNL-PNTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHH-----HHTTCC-TTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHH-----HHHhhc-CCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            35799999999999999999999997  89999986411     111110 1111111 1122   22333       37


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       115 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      .|++|+.||.....   ..+   -...+..|+.....    +.+.+++.. .+.||+++.-....            +.|
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS~~~~~------------~~~  154 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISSIAGKK------------TFP  154 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS------------CCT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhCC------------CCC
Confidence            89999999975321   122   22345566554444    555555443 46677766533221            233


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..-.|+.+......+-+.++..++  +..|++..+-
T Consensus       155 ~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v~  188 (266)
T 3p19_A          155 DHAAYCGTKFAVHAISENVREEVA--ASNVRVMTIA  188 (266)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEEe
Confidence            333455544444556777777774  3456554443

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.11  E-value=0.0024  Score=60.07  Aligned_cols=158  Identities=15%  Similarity=0.119  Sum_probs=87.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC----------C--chhHHHHHhcCCCCCeEEEEeC-CCc---
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV----------N--TPGVTADISHMDTNAVVRGFLG-QQQ---  107 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~----------~--~~g~~~dl~~~~~~~~v~~~~~-t~d---  107 (358)
                      .+...+.|+||+|.+|.+++..|+..|.  .|+++|++          .  ......++....  ..+..+.. -+|   
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~  100 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWDQ  100 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHHH
Confidence            3445899999999999999999999987  99999986          2  222233343321  23332211 122   


Q ss_pred             HHhhhC-------CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHH----HHhhC-----CCeEEEEecCC
Q 018265          108 LEDALT-------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCC-----PKAIVNLISNP  165 (358)
Q Consensus       108 ~~~al~-------~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~-----p~a~viv~tNP  165 (358)
                      .+++++       ..|++|+.||......   .+   -...+..|+.....+++.    +.+..     +.+.||+++.-
T Consensus       101 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~  180 (322)
T 3qlj_A          101 AAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSG  180 (322)
T ss_dssp             HHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCH
Confidence            222232       7899999999754221   12   223456666544444443    33221     13677777642


Q ss_pred             CCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       166 ~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ...           . +.+..-.|+.+......+-+.+|..++  +..|++.++
T Consensus       181 ~~~-----------~-~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  220 (322)
T 3qlj_A          181 AGL-----------Q-GSVGQGNYSAAKAGIATLTLVGAAEMG--RYGVTVNAI  220 (322)
T ss_dssp             HHH-----------H-CBTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHc-----------c-CCCCCccHHHHHHHHHHHHHHHHHHhc--ccCcEEEEe
Confidence            211           0 233333455544444556777777764  344544443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.11  E-value=0.00098  Score=63.74  Aligned_cols=89  Identities=16%  Similarity=0.202  Sum_probs=57.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCcHHhhhC----CCCEEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALT----GMDIVII  120 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~----~aDiVIi  120 (358)
                      .+||+|||. |.+|.+++..|...|.  +|.++|.+.. ...+.++   ..    ..   +.|++++++    +||+||+
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~~---G~----~~---~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVDE---GF----DV---SADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHT---TC----CE---ESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc---CC----ee---eCCHHHHHHhcccCCCEEEE
Confidence            468999998 9999999999999886  8999998752 1112211   11    11   235566555    5799999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +.-                ...+.++++.+..+.|+++|+.++
T Consensus        75 avP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AVP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eCC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            842                122334445555556777666554

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.10  E-value=0.0045  Score=58.44  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~   82 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  .|+++| ++.
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            345899999999999999999999997  899999 765

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.10  E-value=0.0016  Score=58.55  Aligned_cols=150  Identities=14%  Similarity=0.129  Sum_probs=84.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-e--CCCc--hhHHHHHhcCCCCCeEEEEeCCCcHHhhh-------CC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-D--VVNT--PGVTADISHMDTNAVVRGFLGQQQLEDAL-------TG  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D--~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al-------~~  114 (358)
                      +++.|+||+|.+|.+++..|+..|.  +|++. |  ++..  .....++ .   ..++.   ...+.++++       ..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~---~~~~~---~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P---GTIAL---AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T---TEEEC---CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C---CCccc---CHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999987  89998 5  7641  1122222 1   11111   112222322       36


Q ss_pred             CCEEEEcCCCCCC----C--CCC---HHhHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          115 MDIVIIPAGVPRK----P--GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       115 aDiVIi~ag~~~~----~--g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      .|++|+.||....    +  ..+   -...+..|+....    .+.+.+.+. ..+.||+++.-....            
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~------------  139 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITSSVGKK------------  139 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTS------------
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECChhhCC------------
Confidence            8999999987543    1  112   2234556654444    444444443 357777776543221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|..-.++.+......+-+.++..++  +..|++.++-
T Consensus       140 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v~  176 (244)
T 1zmo_A          140 PLAYNPLYGPARAATVALVESAAKTLS--RDGILLYAIG  176 (244)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            233333455554444556677777763  3445544443

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.09  E-value=0.0051  Score=54.67  Aligned_cols=157  Identities=17%  Similarity=0.178  Sum_probs=85.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeCCCc---HHhh-------hC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTNAVVRGFLGQQQ---LEDA-------LT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-------l~  113 (358)
                      ++|.|+||+|.+|.+++..|+..|.  +++++ +++.  ......++.........-....-+|   .+++       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999887  88887 6654  1222223332211111101111122   2222       34


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      +.|+||+.||.....   ..+   ....+..|+..    .+.+.+.+++.. .+.||++|.....           . +.
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~-----------~-~~  146 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITSVVGI-----------L-GN  146 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHH-----------H-CC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeChhhc-----------c-CC
Confidence            799999999875321   111   23345566655    566666665543 4677776653211           1 23


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      |..-.++.+......+...+++.+.  +..+++.++.
T Consensus       147 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  181 (245)
T 2ph3_A          147 PGQANYVASKAGLIGFTRAVAKEYA--QRGITVNAVA  181 (245)
T ss_dssp             SSBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHH--HcCeEEEEEE
Confidence            3333344444444455666776663  3345544443

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.09  E-value=0.0015  Score=59.21  Aligned_cols=158  Identities=15%  Similarity=0.068  Sum_probs=89.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---Hhhh---
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDAL---  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~---~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al---  112 (358)
                      +.+++.|+||+|.+|.+++..|+.   .|.  +|+++|++.  ......++........+..+.. -+|.   ++++   
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            345799999999999999999998   676  899999875  2222233332100122332211 1222   1222   


Q ss_pred             -C-----CCC--EEEEcCCCCCCCC------CC---HHhHHHHHHHHHHHHHHHHHhhC-----CCeEEEEecCCCCccH
Q 018265          113 -T-----GMD--IVIIPAGVPRKPG------MT---RDDLFNINAGIVKTLCEGIAKCC-----PKAIVNLISNPVNSTV  170 (358)
Q Consensus       113 -~-----~aD--iVIi~ag~~~~~g------~~---r~~~~~~N~~i~~~i~~~i~~~~-----p~a~viv~tNP~d~~t  170 (358)
                       +     .-|  ++|+.||.....+      .+   -...+..|+.....+++.+..+-     ..+.||+++.-.... 
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~-  161 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ-  161 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS-
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC-
Confidence             1     347  9999998743211      22   23345677777666666665432     236777776543221 


Q ss_pred             HHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          171 PIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       171 ~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                                 +.|..-.|+.+......+-+.++..++  .  |++..+.
T Consensus       162 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~--~--i~vn~v~  196 (259)
T 1oaa_A          162 -----------PYKGWGLYCAGKAARDMLYQVLAAEEP--S--VRVLSYA  196 (259)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHCT--T--EEEEEEE
T ss_pred             -----------CCCCccHHHHHHHHHHHHHHHHHhhCC--C--ceEEEec
Confidence                       233333455554444556777887774  2  6555554

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.09  E-value=0.0042  Score=57.19  Aligned_cols=78  Identities=17%  Similarity=0.120  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH----Hhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----EDA------  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----~~a------  111 (358)
                      +..+|.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++.... ...+..+.. -+|.    +++      
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHH
Confidence            445899999999999999999999987  999999876  233334454332 123333211 1222    112      


Q ss_pred             -hCCCCEEEEcCCCC
Q 018265          112 -LTGMDIVIIPAGVP  125 (358)
Q Consensus       112 -l~~aDiVIi~ag~~  125 (358)
                       +...|++|+.||..
T Consensus        88 ~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           88 HFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             hCCCCCEEEECCccc
Confidence             24799999999975

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.09  E-value=0.0025  Score=58.08  Aligned_cols=154  Identities=13%  Similarity=0.114  Sum_probs=84.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe-CCCc---HHhhh-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  112 (358)
                      ..+.|+||+|.+|.+++..|+..|.  .+++.|.+..   .....++....  ..+..+. .-+|   .++++       
T Consensus        26 k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           26 RVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4788999999999999999999987  8999986551   12222232221  2222221 1122   22223       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ...|++|+.||.....   ..+   -...+..|+.....    +.+.+.+. ..+.||+++....           .. +
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~~-~  168 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGSVNG-----------SR-G  168 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HH-C
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCChhh-----------cc-C
Confidence            3799999999875321   112   22344556554444    44444433 3567777765221           11 2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .+..-.++.+......+.+.++..++  +..|++.++
T Consensus       169 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  203 (269)
T 3gk3_A          169 AFGQANYASAKAGIHGFTKTLALETA--KRGITVNTV  203 (269)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhh--hcCCEEEEE
Confidence            34334455554444556677777764  334544433

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.09  E-value=0.0018  Score=59.34  Aligned_cols=157  Identities=19%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  112 (358)
                      +.+.|.|+||+|.+|.+++..|+..|.  .+++.|.+.   ......++....  ..+..+.. -+|   .++++     
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~  102 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIE  102 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999997  889988854   222233333321  22222211 122   22223     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                        ...|++|+.||......   .+   -...+..|+...    +.+.+.+.+. ..+.||+++.-..           ..
T Consensus       103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~~  170 (269)
T 4dmm_A          103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ-RSGRIINIASVVG-----------EM  170 (269)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCHHH-----------HH
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchhh-----------cC
Confidence              27899999999754221   12   223445565544    4444444443 3466777654211           11


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.+..-.++.+......+-+.+|..++  +..|++.++.
T Consensus       171 -~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v~  207 (269)
T 4dmm_A          171 -GNPGQANYSAAKAGVIGLTKTVAKELA--SRGITVNAVA  207 (269)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHHh--hhCcEEEEEE
Confidence             334444455554444556777787764  3445554443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.07  E-value=0.00087  Score=62.01  Aligned_cols=64  Identities=20%  Similarity=0.304  Sum_probs=47.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||+ |.+|..++..|...+.  +|.++|++...  ...+....    +..   +++++++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDA--CKEFQDAG----EQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            68999998 9999999999998887  89999987522  12233211    222   346778889999999984

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.07  E-value=0.0084  Score=55.21  Aligned_cols=159  Identities=13%  Similarity=0.107  Sum_probs=92.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------hhHHHHHhcCCCCCeEEEEeC-CCc---HHhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTNAVVRGFLG-QQQ---LEDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---------~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a  111 (358)
                      +..++.|+||+|.+|.+++..|+..|.  .|+++|++..         .....++...  ...+..+.. -+|   .+++
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~   83 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVAAA   83 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHH
Confidence            345899999999999999999999987  8999998752         1122233321  123332211 122   2223


Q ss_pred             h-------CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHH
Q 018265          112 L-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAE  175 (358)
Q Consensus       112 l-------~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP~d~~t~~~~~  175 (358)
                      +       ...|++|+.||.....   ..+   -...+..|+.-...+++.+...-   ..+.||+++.......     
T Consensus        84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-----  158 (285)
T 3sc4_A           84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP-----  158 (285)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG-----
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC-----
Confidence            3       3899999999975321   122   23345678777777777665542   3567888876554331     


Q ss_pred             HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       176 ~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                            .++..-.++.+...-..+-+.+|..++  +..|++..+-
T Consensus       159 ------~~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~vn~v~  195 (285)
T 3sc4_A          159 ------KWLRPTPYMMAKYGMTLCALGIAEELR--DAGIASNTLW  195 (285)
T ss_dssp             ------GGSCSHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEEE
T ss_pred             ------CCCCCchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEEe
Confidence                  011222344443333456677777764  3445554443

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.07  E-value=0.0014  Score=60.15  Aligned_cols=154  Identities=11%  Similarity=0.070  Sum_probs=85.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHh-------hhC
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLED-------ALT  113 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~-------al~  113 (358)
                      ...+..+|.|+||+|.+|.+++..|+..|.  +|+++|++.....    ...   ..+.. ++...+.++       .+.
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~----~~~---~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDV----NVS---DHFKIDVTNEEEVKEAVEKTTKKYG   80 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CT----TSS---EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhcc----Cce---eEEEecCCCHHHHHHHHHHHHHHcC
Confidence            344556999999999999999999999987  8999998762110    000   00100 000011222       234


Q ss_pred             CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..|++|+.||......   .+   -...+..|+...    +.+.+.+.+. ..+.||+++......            +.
T Consensus        81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~~  147 (269)
T 3vtz_A           81 RIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI-GHGSIINIASVQSYA------------AT  147 (269)
T ss_dssp             CCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------BC
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhcc------------CC
Confidence            8899999999753221   11   123345565544    4444445443 356777776543221            22


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +..-.++.+......+-+.+|..++  + .|++..+-
T Consensus       148 ~~~~~Y~asKaa~~~l~~~la~e~~--~-~i~vn~v~  181 (269)
T 3vtz_A          148 KNAAAYVTSKHALLGLTRSVAIDYA--P-KIRCNAVC  181 (269)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHT--T-TEEEEEEE
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHhc--C-CCEEEEEE
Confidence            3333444544444567778888875  2 45544443

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.05  E-value=0.0048  Score=56.73  Aligned_cols=157  Identities=17%  Similarity=0.237  Sum_probs=87.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|+.++..|+..|.  +|++++++.  ......++....  ..+..+.. -+|   .++++      
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  118 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE  118 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999998886  889988764  222233343321  22322211 122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                       .+.|+||..||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|.....           . 
T Consensus       119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~-----------~-  185 (285)
T 2c07_A          119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGL-----------T-  185 (285)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHH-----------H-
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhc-----------c-
Confidence             4789999999875321   112   23345566655    444444444433 4677776654211           1 


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.++.+......+...+++.+.  +..+++.++.
T Consensus       186 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v~  222 (285)
T 2c07_A          186 GNVGQANYSSSKAGVIGFTKSLAKELA--SRNITVNAIA  222 (285)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHH--HhCcEEEEEE
Confidence            233333445544444456666776663  3345554444

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.05  E-value=0.0012  Score=58.46  Aligned_cols=70  Identities=19%  Similarity=0.263  Sum_probs=45.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCc---HHhh-hCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi~a  122 (358)
                      |||+|+|+ |.+|++++..|...+.  +++++|.++.  ...++.+......+.+  ..+|   ++++ +++||+||++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~--~~~~l~~~~~~~~i~g--d~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDRE--LCEEFAKKLKATIIHG--DGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHH--HHHHHHHHSSSEEEES--CTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHH--HHHHHHHHcCCeEEEc--CCCCHHHHHhcCcccCCEEEEec
Confidence            68999998 9999999999999887  9999998752  1222221111111111  1122   3333 78999999985


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      +
T Consensus        74 ~   74 (218)
T 3l4b_C           74 P   74 (218)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.04  E-value=0.0029  Score=57.67  Aligned_cols=155  Identities=18%  Similarity=0.156  Sum_probs=86.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-------  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-------  113 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++....... .....  ..+..+.. -+|   .+++++       
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEA-VAALE--AEAIAVVADVSDPKAVEAVFAEALEEFG   79 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHH-HHTCC--SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHHhc--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            446899999999999999999999987  899999875211111 11111  12222111 122   223333       


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018265          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      ..|++|+.||.....   ..+   -...+..|+.....+++.+..+- ..+.||+++..... ..- .           .
T Consensus        80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~-~-----------~  146 (263)
T 2a4k_A           80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAF-G-----------L  146 (263)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHH-H-----------H
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCC-C-----------c
Confidence            569999999865321   112   23346678777777777666543 14677777665443 210 0           0


Q ss_pred             cEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      -.++.+......+-+.++..+.  +..|++.++
T Consensus       147 ~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  177 (263)
T 2a4k_A          147 AHYAAGKLGVVGLARTLALELA--RKGVRVNVL  177 (263)
T ss_dssp             HHHHHCSSHHHHHHHHHHHHHT--TTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            1122333333446667777764  345654444

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.03  E-value=0.0016  Score=60.25  Aligned_cols=154  Identities=16%  Similarity=0.182  Sum_probs=80.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCchhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L-~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      +.|+++||+|+||+|.+|+.++..+...+-. +|+- +|.+.....-.|+..... ...+.   .+.|+++.++++|+||
T Consensus         3 ~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~---v~~dl~~ll~~~DVVI   78 (272)
T 4f3y_A            3 GSMSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVA---LTDDIERVCAEADYLI   78 (272)
T ss_dssp             ---CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCB---CBCCHHHHHHHCSEEE
T ss_pred             CCccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCce---ecCCHHHHhcCCCEEE
Confidence            4477899999998899999999988876533 5554 677531111112222111 11222   2468888899999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ecc---
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLD---  195 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t-~ld---  195 (358)
                      ....                -....+.++...+.+.+  +++-|-.-+  ..- .+.+.++..- -.-+++-. .+-   
T Consensus        79 DfT~----------------p~a~~~~~~~al~~G~~--vVigTTG~s--~~~-~~~L~~aa~~-~~vv~a~N~s~Gv~l  136 (272)
T 4f3y_A           79 DFTL----------------PEGTLVHLDAALRHDVK--LVIGTTGFS--EPQ-KAQLRAAGEK-IALVFSANMSVGVNV  136 (272)
T ss_dssp             ECSC----------------HHHHHHHHHHHHHHTCE--EEECCCCCC--HHH-HHHHHHHTTT-SEEEECSCCCHHHHH
T ss_pred             EcCC----------------HHHHHHHHHHHHHcCCC--EEEECCCCC--HHH-HHHHHHHhcc-CCEEEECCCCHHHHH
Confidence            8641                12334444555555432  233332211  111 1123333321 01133321 222   


Q ss_pred             HHHHHHHHHHHhCCCCCCCceEEEEecCC
Q 018265          196 VVRANTFVAEVLGLDPREVDVPVVGGHAG  224 (358)
Q Consensus       196 s~R~~~~lA~~l~v~~~~v~~~v~G~hg~  224 (358)
                      -.+|....|+.|+   .+.++-|+=-|+.
T Consensus       137 ~~~~~~~aa~~l~---~~~diei~E~HH~  162 (272)
T 4f3y_A          137 TMKLLEFAAKQFA---QGYDIEIIEAHHR  162 (272)
T ss_dssp             HHHHHHHHHHHTS---SSCEEEEEEEECT
T ss_pred             HHHHHHHHHHhcC---cCCCEEEEEecCC
Confidence            2356677777775   4667888888876

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.01  E-value=0.00077  Score=62.74  Aligned_cols=109  Identities=12%  Similarity=0.137  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh-CCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi~ag~~  125 (358)
                      |||+|||+ |.+|..++..|...|.  +|.++|++...   .++............   .+..+++ +++|+||++.-  
T Consensus         3 mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~~g~~~~~~~---~~~~~~~~~~~D~vilavk--   71 (294)
T 3g17_A            3 LSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKT---ITYYTVPHAPAQDIV---VKGYEDVTNTFDVIIIAVK--   71 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEE---EEEESSTTSCCEEEE---EEEGGGCCSCEEEEEECSC--
T ss_pred             cEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCc---EEEEecCCeecccee---cCchHhcCCCCCEEEEeCC--
Confidence            79999998 9999999999988876  88999987511   011111111111121   1224555 89999999852  


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                        +.            -+.++++.++.+- |+..|+.+.|-++...        .   +|.+++++-
T Consensus        72 --~~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--------~---~~~~~v~~g  113 (294)
T 3g17_A           72 --TH------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLE--------H---IPFKNVCQA  113 (294)
T ss_dssp             --GG------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGG--------G---CCCSCEEEC
T ss_pred             --cc------------CHHHHHHHHHHhhCCCCEEEEeccCcccHh--------h---CCCCcEEEE
Confidence              11            1223344444433 6778888899998763        1   677787654

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.94  E-value=0.00095  Score=59.13  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=87.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      .+++.|+||+|.+|.+++..|+..|.  .|++.|++..    .|+.+..   .++      ..-+.+...|++|+.||..
T Consensus         6 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v~------~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            6 KTVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SVY------HYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HHH------HHHHHHCSEEEEEECCCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HHH------HHHHHhCCCCEEEECCCCC
Confidence            34789999999999999999998887  8899987532    2222211   000      1122345789999999865


Q ss_pred             CCC----CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHH
Q 018265          126 RKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (358)
Q Consensus       126 ~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~  197 (358)
                      ...    ..+   -...+..|+.-...+.+.+..+- +.+.|++++......            +.+..-.++.+.....
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------~~~~~~~Y~asK~a~~  138 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK------------VVANTYVKAAINAAIE  138 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS------------CCTTCHHHHHHHHHHH
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc------------CCCCchHHHHHHHHHH
Confidence            221    122   23346778877777777776553 346777776433211            2333334444444445


Q ss_pred             HHHHHHHHHhCCCCCCCceEEEE
Q 018265          198 RANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       198 R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+-+.+++.++-    |++..+.
T Consensus       139 ~~~~~la~e~~~----i~vn~v~  157 (223)
T 3uce_A          139 ATTKVLAKELAP----IRVNAIS  157 (223)
T ss_dssp             HHHHHHHHHHTT----SEEEEEE
T ss_pred             HHHHHHHHhhcC----cEEEEEE
Confidence            577778888752    6555544

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.92  E-value=0.0037  Score=58.57  Aligned_cols=65  Identities=23%  Similarity=0.411  Sum_probs=49.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +.||++||- |.+|+.++..|+..|+  ++..+|++.  ..+.++.....    +.   ..++.++.++||+||.+-
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~--~~~~~l~~~Ga----~~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQ--SAVDGLVAAGA----SA---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSH--HHHHHHHHTTC----EE---CSSHHHHHTTCSEEEECC
T ss_pred             cCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCH--HHHHHHHHcCC----EE---cCCHHHHHhcCCceeecC
Confidence            349999998 9999999999999998  999999874  22333433221    11   246789999999999973

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.92  E-value=0.0037  Score=56.55  Aligned_cols=156  Identities=11%  Similarity=0.061  Sum_probs=85.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-------  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-------  113 (358)
                      +++.|+||+|.+|.+++..|+..|.  ++++++.+..  .....++... ....+..+.. -+|   .+++++       
T Consensus         8 k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            8 RHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKD-VEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGG-GGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999987  8999887651  1122222211 1122333211 122   233333       


Q ss_pred             CCCEEEEcCCC--CCC-C--CCCH---HhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCC-CCccHHHHHHHHHHh
Q 018265          114 GMDIVIIPAGV--PRK-P--GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNP-VNSTVPIAAEVFKKV  180 (358)
Q Consensus       114 ~aDiVIi~ag~--~~~-~--g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP-~d~~t~~~~~~~~~~  180 (358)
                      ..|++|+.||.  ... +  ..+.   ...+..|+.....+.+.    +++. ..+.|++++.. ...           .
T Consensus        85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~~~~~-----------~  152 (264)
T 3i4f_A           85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQGADS-----------A  152 (264)
T ss_dssp             CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTTGGG-----------C
T ss_pred             CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeechhcc-----------c
Confidence            88999999993  211 1  1122   23455665544444444    4554 34677776644 211           1


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .+++..-.++.+......+-+.++..++  +..|++.++
T Consensus       153 ~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  189 (264)
T 3i4f_A          153 PGWIYRSAFAAAKVGLVSLTKTVAYEEA--EYGITANMV  189 (264)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            2333334455554444556677777763  344544443

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.89  E-value=0.002  Score=57.20  Aligned_cols=138  Identities=16%  Similarity=0.116  Sum_probs=78.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhC------CCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT------GMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~------~aDiVI  119 (358)
                      ++|.|+||+|.+|++++..|+..|.  +|+++|++.. .     ....   .+.. .+...+++++++      +.|++|
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~-~-----~~~~---~~~~D~~~~~~~~~~~~~~~~~~~~d~li   71 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE-G-----EDLI---YVEGDVTREEDVRRAVARAQEEAPLFAVV   71 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC-S-----SSSE---EEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc-c-----cceE---EEeCCCCCHHHHHHHHHHHHhhCCceEEE
Confidence            5899999999999999999999887  8999998652 1     1000   0000 000112334444      789999


Q ss_pred             EcCCCCCCCC------C----CHHhHHHHHHHHHHHHHHHHHhh----C-----CCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          120 IPAGVPRKPG------M----TRDDLFNINAGIVKTLCEGIAKC----C-----PKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       120 i~ag~~~~~g------~----~r~~~~~~N~~i~~~i~~~i~~~----~-----p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      +++|......      .    .-...+..|+.....+.+.+...    .     +.+.+|+++.....            
T Consensus        72 ~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~------------  139 (242)
T 1uay_A           72 SAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAF------------  139 (242)
T ss_dssp             ECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHH------------
T ss_pred             EcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc------------
Confidence            9998643211      1    22344566766655555555433    1     12377776543210            


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHh
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVL  207 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l  207 (358)
                      .+.+....++.+......+-..+++.+
T Consensus       140 ~~~~~~~~Y~~sK~a~~~~~~~l~~e~  166 (242)
T 1uay_A          140 EGQIGQAAYAASKGGVVALTLPAAREL  166 (242)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence            123333344554444445566667666

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.89  E-value=0.0008  Score=64.66  Aligned_cols=71  Identities=23%  Similarity=0.302  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++|||+|+|| |+||+.++..|... .  ++.+.|++...  ...+.+..  ..+.. ......+.+.++++|+||.+.+
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~--~~~~~~~~--~~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNEN--LEKVKEFA--TPLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHH--HHHHTTTS--EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHH--HHHHhccC--CcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            3589999998 99999999888654 3  89999987521  11122211  11211 0111345677899999999864

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.89  E-value=0.0012  Score=59.23  Aligned_cols=152  Identities=14%  Similarity=0.142  Sum_probs=86.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCcHHhhhC-----CCCEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALT-----GMDIV  118 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-----~aDiV  118 (358)
                      +++|.|+||+|.+|.+++..|+. .+.  .+++.|++.. .........++    +   +...+.+++++     ..|++
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~D----v---~~~~~v~~~~~~~~~~~id~l   74 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKAD----L---TKQQDITNVLDIIKNVSFDGI   74 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEECC----T---TCHHHHHHHHHHTTTCCEEEE
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEecC----c---CCHHHHHHHHHHHHhCCCCEE
Confidence            34799999999999999999988 565  8888888652 11100000000    0   00112222332     78999


Q ss_pred             EEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          119 IIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       119 Ii~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      |+.||.....   ..+   -...+..|+.-...+++.+..+- ..+.||+++......            +.|..-.++.
T Consensus        75 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------~~~~~~~Y~a  142 (244)
T 4e4y_A           75 FLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI------------AKPNSFAYTL  142 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC------------CCTTBHHHHH
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc------------CCCCCchhHH
Confidence            9999975321   122   23456778877777777776553 235677765443221            2333334455


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +......+-+.++..++  +..|++.++-
T Consensus       143 sKaa~~~~~~~la~e~~--~~gi~v~~v~  169 (244)
T 4e4y_A          143 SKGAIAQMTKSLALDLA--KYQIRVNTVC  169 (244)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHH--HcCeEEEEEe
Confidence            44444556777777763  3455544443

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.89  E-value=0.0067  Score=57.86  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=48.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|+.+|..+...|.  +|..+|++....       .    ....   ..++++.+++||+|++..
T Consensus       168 ~l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-------~----~~~~---~~sl~ell~~aDvVil~v  230 (340)
T 4dgs_A          168 SPKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG-------V----DWIA---HQSPVDLARDSDVLAVCV  230 (340)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT-------S----CCEE---CSSHHHHHHTCSEEEECC
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc-------c----Ccee---cCCHHHHHhcCCEEEEeC
Confidence            345579999998 9999999999987777  999999865220       0    1111   246789999999999974

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.88  E-value=0.0034  Score=58.66  Aligned_cols=63  Identities=22%  Similarity=0.337  Sum_probs=43.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ||++||- |.+|+.++..|+..|+  +|+.+|++..+  +.++....    ...   ..++.+++++||+||++.
T Consensus         7 kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            7 KIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASK--AEPLTKLG----ATV---VENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECC
T ss_pred             cEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHcC----CeE---eCCHHHHHhcCCceeeec
Confidence            8999998 9999999999999998  99999987521  11222211    122   245689999999999974

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.87  E-value=0.0012  Score=60.18  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=45.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||+ |.+|..++..|...++  +|.++|.........++....  .  .     +++++++++||+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g--~--~-----~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG--V--T-----ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT--C--E-----ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC--C--c-----CCHHHHHhcCCEEEEEC
Confidence            69999998 9999999999998887  888887632222222232211  1  1     23467889999999985

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.87  E-value=0.0027  Score=59.00  Aligned_cols=100  Identities=12%  Similarity=0.092  Sum_probs=60.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC-----C-CCcEEEEEeCCCchhHHHHHhc-CCC---C--Ce-EEE-EeCCCcHHhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKIN-----P-LVSVLHLYDVVNTPGVTADISH-MDT---N--AV-VRG-FLGQQQLEDA  111 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~-----~-~~~el~L~D~~~~~g~~~dl~~-~~~---~--~~-v~~-~~~t~d~~~a  111 (358)
                      +|||+|||+ |.+|..++..|...     | .  +|.++|+ .  .....+.+ ...   .  .. ... ...+++. ++
T Consensus         8 ~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~   80 (317)
T 2qyt_A            8 PIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AE   80 (317)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cc
Confidence            479999998 99999999999887     6 5  8999987 3  22222322 110   0  00 000 0011343 56


Q ss_pred             hCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCc
Q 018265          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  168 (358)
                      ++++|+||++....    .            +.++++.+..+- |+..|+.++|-.+.
T Consensus        81 ~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           81 VGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             HCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             cCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            79999999985322    1            233445555443 56677777887654

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.84  E-value=0.0065  Score=55.56  Aligned_cols=154  Identities=12%  Similarity=0.129  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  112 (358)
                      +..++.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++.     ..+..+.. -+|   .++++      
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAAEKGKALADELG-----NRAEFVSTNVTSEDSVLAAIEAANQL  101 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            445899999999999999999999987  899999876  222222331     11222111 122   22223      


Q ss_pred             CCCCEEEEc-CCCCCCC--------CCC---HHhHHHHHHHHHHHHH----HHHHhh-----CCCeEEEEecCCCCccHH
Q 018265          113 TGMDIVIIP-AGVPRKP--------GMT---RDDLFNINAGIVKTLC----EGIAKC-----CPKAIVNLISNPVNSTVP  171 (358)
Q Consensus       113 ~~aDiVIi~-ag~~~~~--------g~~---r~~~~~~N~~i~~~i~----~~i~~~-----~p~a~viv~tNP~d~~t~  171 (358)
                      ...|++|+. +|.....        ..+   -...+..|+.....+.    +.+.+.     ...+.||+++......  
T Consensus       102 ~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--  179 (281)
T 3ppi_A          102 GRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE--  179 (281)
T ss_dssp             SEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS--
T ss_pred             CCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC--
Confidence            267999998 5543211        111   2334455554444444    444331     2456777776544322  


Q ss_pred             HHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          172 IAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       172 ~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                                +.+..-.++.+......+.+.++..++  +..|++..+
T Consensus       180 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  215 (281)
T 3ppi_A          180 ----------GQIGQTAYAAAKAGVIGLTIAAARDLS--SAGIRVNTI  215 (281)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ----------CCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence                      233333455544444556777777773  334544443

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.82  E-value=0.0048  Score=56.10  Aligned_cols=151  Identities=17%  Similarity=0.145  Sum_probs=83.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhh-------CC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDAL-------TG  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al-------~~  114 (358)
                      .++|.|+||+|.+|++++..|+..|.  +|++.|++.....     .    ..+..+..    ..+.++++       .+
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~-----~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   96 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSA-----D----PDIHTVAGDISKPETADRIVREGIERFGR   96 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCS-----S----TTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcc-----c----CceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence            34899999999999999999999997  9999998752110     0    01111110    01222223       38


Q ss_pred             CCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHH----HHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      .|++|+.||......   .+   -...+..|+.....+++    .+.+. ..+.|++++.-....         .. ..+
T Consensus        97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~---------~~-~~~  165 (260)
T 3un1_A           97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITTSLVDQ---------PM-VGM  165 (260)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCTTTTS---------CB-TTC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEechhhcc---------CC-CCC
Confidence            999999999753221   12   22345566655444444    44443 356677665432110         00 111


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.-.++.+......+-+.+|..++  +..|++.++-
T Consensus       166 ~~~~Y~~sKaa~~~l~~~la~e~~--~~gI~vn~v~  199 (260)
T 3un1_A          166 PSALASLTKGGLNAVTRSLAMEFS--RSGVRVNAVS  199 (260)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhC--cCCeEEEEEe
Confidence            122333344444556777888774  4455544443

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.81  E-value=0.0033  Score=56.42  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=89.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCcH---HhhhC----
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQL---EDALT----  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~----  113 (358)
                      +..+|.|+||+|.+|.+++..|+..|.  .+++.+.+.   ......++....  ..+..+.. -+|.   +..++    
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   81 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDN   81 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  777764433   222333444321  22222211 1221   12221    


Q ss_pred             ---------CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHH
Q 018265          114 ---------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       114 ---------~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                               ..|++|+.||......   .+   -...+..|+.....+.+.+..+- +.+.|++++......        
T Consensus        82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~--------  153 (255)
T 3icc_A           82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI--------  153 (255)
T ss_dssp             HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS--------
T ss_pred             HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc--------
Confidence                     2899999998743211   11   22345677777777777665442 356777777644222        


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                          +.|..-.++.+......+-+.++..++  +..|++..+
T Consensus       154 ----~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  189 (255)
T 3icc_A          154 ----SLPDFIAYSMTKGAINTMTFTLAKQLG--ARGITVNAI  189 (255)
T ss_dssp             ----CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             ----CCCCcchhHHhHHHHHHHHHHHHHHHH--hcCeEEEEE
Confidence                233333455554444556777777773  334554443

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.0099  Score=53.66  Aligned_cols=151  Identities=16%  Similarity=0.135  Sum_probs=83.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhh-------C
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------T  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------~  113 (358)
                      +++.|+||+|.+|.+++..|+..|....|++++++..  .....++.     ..+..+.. -+|   .++++       .
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG-----GGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            3789999999999999999988753338888888651  21222221     11222111 122   22222       3


Q ss_pred             CCCEEEEcCCCCCC--C--CCCH---HhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 GMDIVIIPAGVPRK--P--GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 ~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ..|++|+.||....  +  ..+.   ...+..|+..    .+.+.+.+++..  +.||+++.-....            +
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~------------~  143 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNM------------Y  143 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCC------------S
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhcc------------C
Confidence            78999999997422  1  1222   2234555544    444444445543  6777776654332            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.++.+......+-+.+|..+    ..|++..+-
T Consensus       144 ~~~~~~Y~asK~a~~~~~~~la~e~----~~i~vn~v~  177 (254)
T 3kzv_A          144 FSSWGAYGSSKAALNHFAMTLANEE----RQVKAIAVA  177 (254)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHC----TTSEEEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhhc----cCcEEEEEe
Confidence            3333344444444455667777775    346555444

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.81  E-value=0.011  Score=58.31  Aligned_cols=109  Identities=15%  Similarity=0.203  Sum_probs=65.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC----------------CCeEEEEeCCCcH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------NAVVRGFLGQQQL  108 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~  108 (358)
                      ...|.+|||. |.||..+|..|+..|+  +++.+|+++  ..+..|.....                ...++.   ++| 
T Consensus        10 ~~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~--~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd-   80 (431)
T 3ojo_A           10 HGSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQ--QTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT-   80 (431)
T ss_dssp             --CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS-
T ss_pred             cCCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCH--HHHHHHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc-
Confidence            3468999998 9999999999999998  999999985  22233333210                112333   344 


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCcc
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNST  169 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~  169 (358)
                         +++||+||++.+.|......+    .-++..+...++.|.++. |..+|+.- |-|....
T Consensus        81 ---~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt  136 (431)
T 3ojo_A           81 ---PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPKTM  136 (431)
T ss_dssp             ---CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHH
T ss_pred             ---hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHH
Confidence               468999999988775332000    112334444555665554 44444433 4555443

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.76  E-value=0.0028  Score=58.37  Aligned_cols=153  Identities=20%  Similarity=0.172  Sum_probs=83.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCc---HHhh-------hCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTG  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l~~  114 (358)
                      .+++.|+||+|.+|.+++..|+..|.  .|+++|++.....  ++.... ...+..+. .-+|   .+++       +..
T Consensus         5 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (281)
T 3zv4_A            5 GEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSAERLR--ELEVAH-GGNAVGVVGDVRSLQDQKRAAERCLAAFGK   79 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHT-BTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHH--HHHHHc-CCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            45899999999999999999999997  9999998752111  111100 11122211 1122   1222       346


Q ss_pred             CCEEEEcCCCCCCCC-------C-C---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          115 MDIVIIPAGVPRKPG-------M-T---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       115 aDiVIi~ag~~~~~g-------~-~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      .|++|+.||.....+       . +   -...+..|+..    .+.+.+.+.+.  .+.+|+++.-....          
T Consensus        80 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------  147 (281)
T 3zv4_A           80 IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSS--RGSVVFTISNAGFY----------  147 (281)
T ss_dssp             CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCGGGTS----------
T ss_pred             CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCeEEEEecchhcc----------
Confidence            799999998642211       1 1   12234455544    44444545443  35666665433211          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                        +.+..-.|+.+......+-+.+|..++  +. |++..+.
T Consensus       148 --~~~~~~~Y~asKaa~~~l~~~la~e~~--~~-Irvn~v~  183 (281)
T 3zv4_A          148 --PNGGGPLYTATKHAVVGLVRQMAFELA--PH-VRVNGVA  183 (281)
T ss_dssp             --SSSSCHHHHHHHHHHHHHHHHHHHHHT--TT-SEEEEEE
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHhc--CC-CEEEEEE
Confidence              222223345544444567788888886  33 6655554

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.75  E-value=0.0045  Score=56.57  Aligned_cols=153  Identities=19%  Similarity=0.122  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEe-CCCc---HHhhh------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  112 (358)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++...  ....++..      +..+. .-+|   .++++      
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~   79 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRR   79 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999987  89999987521  11112211      11111 1122   22233      


Q ss_pred             -CCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 -~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       ...|++|+.+|.....+    .+   -...+..|+.....+++.+..+-  ..+.||+++.-..           .. +
T Consensus        80 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~-----------~~-~  147 (270)
T 1yde_A           80 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVG-----------AI-G  147 (270)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHH-----------HH-C
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccc-----------cC-C
Confidence             37899999998743211    11   22345566655544444443210  1366777654221           01 2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      .|..-.++.+......+-+.++..++  +..|++.++
T Consensus       148 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  182 (270)
T 1yde_A          148 QAQAVPYVATKGAVTAMTKALALDES--PYGVRVNCI  182 (270)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            23333344444444456667776653  344544433

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.75  E-value=0.0099  Score=55.91  Aligned_cols=158  Identities=14%  Similarity=0.161  Sum_probs=86.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC---------C--chhHHHHHhcCCCCCeEEEEeCCCcHHhh--
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV---------N--TPGVTADISHMDTNAVVRGFLGQQQLEDA--  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~---------~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~a--  111 (358)
                      +.++|.|+||+|.+|..++..|+..|.  .|++.|..         .  ......++..... ..+-......+.+++  
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~~   84 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVK   84 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHHH
Confidence            345899999999999999999999987  89998863         2  1222233432211 111111111122222  


Q ss_pred             -----hCCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHH
Q 018265          112 -----LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       112 -----l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~  176 (358)
                           +...|++|+.||......   .+   -...+..|+...    +.+.+.+++. ..+.||+++.-..         
T Consensus        85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~grIV~vsS~~~---------  154 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTASASG---------  154 (319)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH---------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECChhh---------
Confidence                 347899999999754321   22   123455566554    4444444544 3467777664321         


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                        .. +.+....|+.+......|-+.+++.+.  +..|++..+.
T Consensus       155 --~~-~~~~~~~Y~aSK~a~~~~~~~la~el~--~~gI~vn~v~  193 (319)
T 1gz6_A          155 --IY-GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCNTIA  193 (319)
T ss_dssp             --HH-CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             --cc-CCCCCHHHHHHHHHHHHHHHHHHHHhc--ccCEEEEEEe
Confidence              11 223333445555445556677777763  3455555444

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.72  E-value=0.0011  Score=60.03  Aligned_cols=152  Identities=18%  Similarity=0.123  Sum_probs=82.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CC---cHHhhh------CCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQ---QLEDAL------TGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al------~~a  115 (358)
                      .+.+.|+||+|.+|.+++..|+..|.  .|+++|++. .....++.     ..+..+.. -+   +.++++      ...
T Consensus         9 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~-~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            9 DAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRG-EDVVADLG-----DRARFAAADVTDEAAVASALDLAETMGTL   80 (257)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC-HHHHHHTC-----TTEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCch-HHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            35799999999999999999999987  899999854 21222221     11111111 11   222233      389


Q ss_pred             CEEEEcCCCCCCC------C-CC---HHhHHHHHHHHHHHHHHH----HHhh-------CCCeEEEEecCCCCccHHHHH
Q 018265          116 DIVIIPAGVPRKP------G-MT---RDDLFNINAGIVKTLCEG----IAKC-------CPKAIVNLISNPVNSTVPIAA  174 (358)
Q Consensus       116 DiVIi~ag~~~~~------g-~~---r~~~~~~N~~i~~~i~~~----i~~~-------~p~a~viv~tNP~d~~t~~~~  174 (358)
                      |++|+.||.....      + .+   -...+..|+.-...+++.    +.+.       ...+.||+++.-......   
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---  157 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQ---  157 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCH---
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCC---
Confidence            9999999864210      0 11   233456666554444444    4432       335678887765543321   


Q ss_pred             HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       175 ~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                               +..-.|+.+......+-+.+|..++  +..|++..+
T Consensus       158 ---------~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~vn~v  191 (257)
T 3tl3_A          158 ---------IGQAAYSASKGGVVGMTLPIARDLA--SHRIRVMTI  191 (257)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ---------CCCccHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence                     0011233333333456677777774  344554443

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.72  E-value=0.0041  Score=56.66  Aligned_cols=157  Identities=17%  Similarity=0.109  Sum_probs=86.3

Q ss_pred             CCCEEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCc---HHhhhC-----
Q 018265           45 PGFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-----  113 (358)
Q Consensus        45 ~~~KI~IiGa--~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-----  113 (358)
                      +.++|.|+||  +|.+|.+++..|+..|.  +|++.|++.... ..++.+... ..+..+. .-+|   .+++++     
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRLP-AKAPLLELDVQNEEHLASLAGRVTEA   81 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTSS-SCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhcC-CCceEEEccCCCHHHHHHHHHHHHHH
Confidence            3457999998  89999999999999987  899999875221 111221110 1111111 1122   223333     


Q ss_pred             -----CCCEEEEcCCCCCC------C--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHH
Q 018265          114 -----GMDIVIIPAGVPRK------P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEV  176 (358)
Q Consensus       114 -----~aDiVIi~ag~~~~------~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~  176 (358)
                           ..|++|+.||....      +  ..+   -...+..|+.....+++.+..+- +.+.||+++.... .       
T Consensus        82 ~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~-~-------  153 (269)
T 2h7i_A           82 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-R-------  153 (269)
T ss_dssp             HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-S-------
T ss_pred             hCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc-c-------
Confidence                 78999999987531      1  112   22345678777777777776542 2466777653221 1       


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       177 ~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                           +.|..-.++.+......+-+.+|..++  +..|++..+-
T Consensus       154 -----~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  190 (269)
T 2h7i_A          154 -----AMPAYNWMTVAKSALESVNRFVAREAG--KYGVRSNLVA  190 (269)
T ss_dssp             -----CCTTTHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEEE
T ss_pred             -----ccCchHHHHHHHHHHHHHHHHHHHHhc--ccCcEEEEEe
Confidence                 122222233333333445666777763  3455544443

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.71  E-value=0.022  Score=51.79  Aligned_cols=146  Identities=14%  Similarity=0.125  Sum_probs=79.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhh-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL-------  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al-------  112 (358)
                      .+|.|+||+|.+|.+++..|+..|.  ++++.+...   ......++...  ...+..+... +|   .++++       
T Consensus        27 k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           27 PVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            4799999999999999999999997  787764433   22222333332  1233332111 22   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC----CC---HHhHHHHHHHHH----HHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIV----KTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~----~~i~~~i~~~--~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      ...|+||+.||.....+    .+   -...+..|+...    +.+.+.+.+.  ...+.||++|.....           
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~-----------  171 (272)
T 4e3z_A          103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAI-----------  171 (272)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHH-----------
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhc-----------
Confidence            37899999999754321    12   223455565444    4444444442  235677777653311           


Q ss_pred             hCCCC-CCcEEEeeeccHHHHHHHHHHHhC
Q 018265          180 VGTYD-PKRLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       180 ~~~~p-~~kviG~t~lds~R~~~~lA~~l~  208 (358)
                      . +.+ ..-.++.+......+-+.+++.+.
T Consensus       172 ~-~~~~~~~~Y~asKaa~~~~~~~la~e~~  200 (272)
T 4e3z_A          172 L-GSATQYVDYAASKAAIDTFTIGLAREVA  200 (272)
T ss_dssp             H-CCTTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             c-CCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            1 122 112244544444556677777773

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.70  E-value=0.029  Score=51.20  Aligned_cols=159  Identities=14%  Similarity=0.169  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------hhHHHHHhcCCCCCeEEEEeC-CCc---HHhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTNAVVRGFLG-QQQ---LEDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---------~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a  111 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  .|++.|++..         .....++...  ...+..+.. -+|   .+++
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~   80 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRAA   80 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHH
Confidence            345899999999999999999999997  8999998751         1112222221  122222211 122   2222


Q ss_pred             -------hCCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHH
Q 018265          112 -------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAE  175 (358)
Q Consensus       112 -------l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~  175 (358)
                             +...|++|+.||......   .+   -...+..|+.-...+++.+..+   ...+.||+++.........   
T Consensus        81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~---  157 (274)
T 3e03_A           81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAW---  157 (274)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHH---
T ss_pred             HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC---
Confidence                   237899999999753221   12   2234456665544444444322   2457788887665554310   


Q ss_pred             HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       176 ~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                             ++..-.|+.+...-..+-+.+|..++  +..|++..+
T Consensus       158 -------~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  192 (274)
T 3e03_A          158 -------WGAHTGYTLAKMGMSLVTLGLAAEFG--PQGVAINAL  192 (274)
T ss_dssp             -------HHHCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHhh--hcCEEEEEE
Confidence                   00011233443334456677777774  344555444

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.62  E-value=0.0038  Score=59.37  Aligned_cols=68  Identities=24%  Similarity=0.330  Sum_probs=50.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|..++..+...|.  +|..+|++.......++  .     +..    .++++++++||+|+++.
T Consensus       147 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~--g-----~~~----~~l~~~l~~aDvVil~v  212 (334)
T 2dbq_A          147 DVYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL--N-----AEF----KPLEDLLRESDFVVLAV  212 (334)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH--C-----CEE----CCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc--C-----ccc----CCHHHHHhhCCEEEECC
Confidence            345679999998 9999999999988886  99999987633222211  1     111    25778899999999986


Q ss_pred             CC
Q 018265          123 GV  124 (358)
Q Consensus       123 g~  124 (358)
                      ..
T Consensus       213 p~  214 (334)
T 2dbq_A          213 PL  214 (334)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.57  E-value=0.021  Score=51.00  Aligned_cols=151  Identities=13%  Similarity=0.124  Sum_probs=75.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc---------HHhhhCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ---------LEDALTGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---------~~~al~~a  115 (358)
                      .++|.|+||+|.+|.+++..|+. +.  .++++|.+...  ..++.+..   .+..+... +|         ..+.+...
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~--~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~i   76 (245)
T 3e9n_A            5 KKIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEH--LAALAEIE---GVEPIESDIVKEVLEEGGVDKLKNLDHV   76 (245)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHH--HHHHHTST---TEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHH--HHHHHhhc---CCcceecccchHHHHHHHHHHHHhcCCC
Confidence            35899999999999999999977 54  89999986521  11122211   11111110 01         11223478


Q ss_pred             CEEEEcCCCCCCCC---CC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       116 DiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |++|+.||......   .+   -...+..|+..    .+.+.+.+++..  +.+|+++......            +.|.
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~------------~~~~  142 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNG------------PHPG  142 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC----------------------
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCccccc------------CCCC
Confidence            99999998753221   11   12234555544    555555555543  6677766543221            2233


Q ss_pred             CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .-.++.+......+-+.++..++  +..|++.++-
T Consensus       143 ~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v~  175 (245)
T 3e9n_A          143 NTIYAASKHALRGLADAFRKEEA--NNGIRVSTVS  175 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEEe
Confidence            33455554444556677777764  3445544443

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.57  E-value=0.0031  Score=59.85  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=48.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....+||+|||. |.+|+.++..+...|.  +|..+|++......  ....    .+..   . ++++.+++||+|+++.
T Consensus       152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~----g~~~---~-~l~e~l~~aDvVi~~v  218 (330)
T 2gcg_A          152 GLTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF----QAEF---V-STPELAAQSDFIVVAC  218 (330)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT----TCEE---C-CHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc----Ccee---C-CHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999988776  89999986521111  1111    1121   2 5778899999999986


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      .
T Consensus       219 p  219 (330)
T 2gcg_A          219 S  219 (330)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.51  E-value=0.0038  Score=58.94  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|+.+|..+...|.  +|..+|.+....     .      .+.......++++.+++||+|++..
T Consensus       136 ~l~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~------~~~~~~~~~~l~ell~~aDiV~l~~  201 (315)
T 3pp8_A          136 TREEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSW-----P------GVESYVGREELRAFLNQTRVLINLL  201 (315)
T ss_dssp             CSTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCC-----T------TCEEEESHHHHHHHHHTCSEEEECC
T ss_pred             CcCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhh-----h------hhhhhcccCCHHHHHhhCCEEEEec
Confidence            345679999998 9999999999987777  899999764210     0      0111112246889999999999975


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec--CCCCc
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  168 (358)
                      -..  + +++. ++  |    .   +.+....|.+++|+++  ..+|.
T Consensus       202 Plt--~-~t~~-li--~----~---~~l~~mk~gailIN~aRG~~vd~  236 (315)
T 3pp8_A          202 PNT--A-QTVG-II--N----S---ELLDQLPDGAYVLNLARGVHVQE  236 (315)
T ss_dssp             CCC--G-GGTT-CB--S----H---HHHTTSCTTEEEEECSCGGGBCH
T ss_pred             CCc--h-hhhh-hc--c----H---HHHhhCCCCCEEEECCCChhhhH
Confidence            321  1 1111 11  1    1   1233344789999986  44443

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.51  E-value=0.0058  Score=58.58  Aligned_cols=100  Identities=23%  Similarity=0.309  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ....++|+|||. |.||+.++..+...|.  +|..+|.+. ......++.       +..   ..++++.+++||+|+++
T Consensus       161 ~l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~  227 (351)
T 3jtm_A          161 DLEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVIN  227 (351)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEEC
T ss_pred             cccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEEC
Confidence            445679999998 9999999999987777  899999865 222222221       111   24678999999999998


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec--CCCCc
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  168 (358)
                      .-..  + +++. ++  |    .+.   +....|.+++|+++  .++|.
T Consensus       228 ~Plt--~-~t~~-li--~----~~~---l~~mk~gailIN~aRG~~vde  263 (351)
T 3jtm_A          228 MPLT--E-KTRG-MF--N----KEL---IGKLKKGVLIVNNARGAIMER  263 (351)
T ss_dssp             SCCC--T-TTTT-CB--S----HHH---HHHSCTTEEEEECSCGGGBCH
T ss_pred             CCCC--H-HHHH-hh--c----HHH---HhcCCCCCEEEECcCchhhCH
Confidence            5321  1 1111 11  1    122   23334789999986  44443

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.50  E-value=0.01  Score=58.29  Aligned_cols=93  Identities=18%  Similarity=0.121  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-HHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....+|+|+|. |.||..++..+...|.  +|..+|++..... +.  .+. .    ..    .++++++++||+|+.+.
T Consensus       209 L~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~--~~G-~----~~----~sL~eal~~ADVVilt~  274 (436)
T 3h9u_A          209 IAGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAA--MEG-Y----QV----LLVEDVVEEAHIFVTTT  274 (436)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH--HTT-C----EE----CCHHHHTTTCSEEEECS
T ss_pred             ccCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHH--HhC-C----ee----cCHHHHHhhCCEEEECC
Confidence            34569999998 9999999999988886  8999998752211 11  111 1    11    25789999999999875


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      +...--+.                 +.+....|+++|++++++..
T Consensus       275 gt~~iI~~-----------------e~l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          275 GNDDIITS-----------------EHFPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             SCSCSBCT-----------------TTGGGCCTTEEEEECSSSGG
T ss_pred             CCcCccCH-----------------HHHhhcCCCcEEEEeCCCCC
Confidence            43211110                 12333457899999987753

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.49  E-value=0.072  Score=48.31  Aligned_cols=152  Identities=17%  Similarity=0.168  Sum_probs=87.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc----------HHhhhCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ----------LEDALTGM  115 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~al~~a  115 (358)
                      +.|.|+||++.+|..++..|+..|.  .|++.|+++.  ...++....  ..+..+.. -+|          ..+.+..-
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~--~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEK--RSADFAKER--PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHHHTTC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc--CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            3789999999999999999999998  9999999752  112222211  11111111 112          12335688


Q ss_pred             CEEEEcCCCCCCC---CCCH---HhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          116 DIVIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       116 DiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |++|..||.....   ..+.   ...+..|+.-    .+...+.+.+.  .+.+|+++.-....            +.|.
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInisS~~~~~------------~~~~  142 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIASTRAFQ------------SEPD  142 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCGGGTS------------CCTT
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEeeccccc------------CCCC
Confidence            9999999875432   1222   2234555543    44555555543  47777775433221            2332


Q ss_pred             CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      .-.|+.+.-.-..|-+.+|..++  + +|++-.+..
T Consensus       143 ~~~Y~asKaal~~ltk~lA~ela--~-~IrVN~I~P  175 (247)
T 3ged_A          143 SEAYASAKGGIVALTHALAMSLG--P-DVLVNCIAP  175 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT--T-TSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHC--C-CCEEEEEec
Confidence            22344443333457788899886  4 676655543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.48  E-value=0.0066  Score=56.13  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEE-EEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~-~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ....+.++........+. ..+...+.+++++++|+||.+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            456899999779999999999999986  799999875  222233332210001111 111112356778899999999


Q ss_pred             CCCC
Q 018265          122 AGVP  125 (358)
Q Consensus       122 ag~~  125 (358)
                      +|..
T Consensus       196 ag~g  199 (287)
T 1lu9_A          196 GAIG  199 (287)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            8753

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.45  E-value=0.0055  Score=58.61  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=49.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      ....++|+|||. |.||+.++..+. ..|.  +|..+|++.. .....++.       +..   ..++++.+++||+|++
T Consensus       160 ~l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil  226 (348)
T 2w2k_A          160 NPRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKALG-------AER---VDSLEELARRSDCVSV  226 (348)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhcC-------cEE---eCCHHHHhccCCEEEE
Confidence            345579999998 999999999998 7776  8999998752 21222111       111   1367788999999999


Q ss_pred             cCC
Q 018265          121 PAG  123 (358)
Q Consensus       121 ~ag  123 (358)
                      +..
T Consensus       227 ~vp  229 (348)
T 2w2k_A          227 SVP  229 (348)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            853

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.43  E-value=0.011  Score=60.63  Aligned_cols=116  Identities=16%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC---------CC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV---------VN--TPGVTADISHMDTNAVVRGFLGQQQLEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~---------~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~  113 (358)
                      +...+.|+||+|.+|.+++..|+..|.  .|++.|+         +.  ......++..... ..+-......+.+++++
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~D~~d~~~~~~~~~   94 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA--KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG-EAVADYNSVIDGAKVIE   94 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEC--------------CHHHHHHHHHHTTC-CEEECCCCGGGHHHHHC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcccccccCCHHHHHHHHHHHHHhCC-eEEEEeCCHHHHHHHHH
Confidence            345789999999999999999999987  9999987         22  2223334433211 11111111122233333


Q ss_pred             -------CCCEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHH----HHHHHhhCCCeEEEEecC
Q 018265          114 -------GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       114 -------~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tN  164 (358)
                             ..|++|+.||.....   ..+.   ...+..|+.-...+    .+.+++. ..+.||++|.
T Consensus        95 ~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~-~~g~IV~isS  161 (613)
T 3oml_A           95 TAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ-NYGRIIMTSS  161 (613)
T ss_dssp             ----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             HHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECC
Confidence                   579999999975432   2222   23445565544444    4444443 3567777754

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.41  E-value=0.05  Score=49.40  Aligned_cols=157  Identities=16%  Similarity=0.189  Sum_probs=89.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCcH---Hhhh--CCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQL---EDAL--TGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al--~~aDiVI  119 (358)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|++..+.....+....  .....+. .-+|.   ++++  -.-|++|
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            34678899999999999999999998  999999876433333333322  1121111 11221   1111  3469999


Q ss_pred             EcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 018265          120 IPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       120 i~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      ..||......   .+   -...+..|+.    ..+..++.+.+....+.||+++.-....            +.|..-.|
T Consensus        85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~------------g~~~~~~Y  152 (247)
T 4hp8_A           85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ------------GGIRVPSY  152 (247)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCSSCHHH
T ss_pred             ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC------------CCCCChHH
Confidence            9999754321   22   2233455654    4555666666666668888876533221            22222223


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       153 ~asKaav~~ltr~lA~Ela--~~gIrVNaV~  181 (247)
T 4hp8_A          153 TAAKHGVAGLTKLLANEWA--AKGINVNAIA  181 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHh--hcCeEEEEEe
Confidence            3333233456778888875  5566555444

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.40  E-value=0.029  Score=51.18  Aligned_cols=158  Identities=15%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH----------Hhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a  111 (358)
                      +.+.+.|+||++-+|..++..|+..|.  .|+++|+++  ++..+.++....  .++..+.. -+|.          .+.
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            445788999999999999999999997  899999986  333444554332  12222111 1121          223


Q ss_pred             hCCCCEEEEcCCCCC--CC--CCCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 LTGMDIVIIPAGVPR--KP--GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 l~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      +-.-|++|..||...  .+  ..+.   ...+..|+    -..+..++.+.+.. .+.||+++.-....           
T Consensus        82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~-----------  149 (254)
T 4fn4_A           82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIR-----------  149 (254)
T ss_dssp             HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC-----------
T ss_pred             cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcC-----------
Confidence            467899999999643  22  1222   22344454    45566677776654 57788876433222           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                       +.|..-.|+.+.-....|-+.+|..++  +..|++-.+-.
T Consensus       150 -~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V~P  187 (254)
T 4fn4_A          150 -GGFAGAPYTVAKHGLIGLTRSIAAHYG--DQGIRAVAVLP  187 (254)
T ss_dssp             -SSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             -CCCCChHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEEEe
Confidence             222222334433333456788888875  56676655553

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.40  E-value=0.0058  Score=58.62  Aligned_cols=99  Identities=19%  Similarity=0.150  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCCchhHHHHHhcCCC-C-CeEEEEeCCCcHHhhhCCCCE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~-----~~~el~L~D~~~~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al~~aDi  117 (358)
                      +++||+|+||+|.+|..+...|...+     . .|++++......|...+-.+... . ..+...  ..+ .++++++|+
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~-~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~Dv   83 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYADGR-LRIGALTAATSAGSTLGEHHPHLTPLAHRVVE--PTE-AAVLGGHDA   83 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTS-EEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE--ECC-HHHHTTCSE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCCcc-EEEEEEECCCcCCCchhhhcccccccceeeec--cCC-HHHhcCCCE
Confidence            45799999999999999999998776     3 37777753322222121111110 0 111111  123 356789999


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      ||.+.|...                .+++++.+ +.  .+++|..|++-
T Consensus        84 Vf~alg~~~----------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           84 VFLALPHGH----------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             EEECCTTSC----------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             EEECCCCcc----------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            999865321                23455555 33  35777778775

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.39  E-value=0.0082  Score=56.55  Aligned_cols=67  Identities=16%  Similarity=0.388  Sum_probs=49.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|+.++..+...|.  +|..+|.+......   ....    +..    .++++.+++||+|+++.
T Consensus       139 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~---~~~g----~~~----~~l~ell~~aDvVvl~~  204 (313)
T 2ekl_A          139 ELAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKA---EKIN----AKA----VSLEELLKNSDVISLHV  204 (313)
T ss_dssp             CCTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHH---HHTT----CEE----CCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHH---HhcC----cee----cCHHHHHhhCCEEEEec
Confidence            445679999998 9999999999988886  99999987633221   1111    111    25678899999999985


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      .
T Consensus       205 P  205 (313)
T 2ekl_A          205 T  205 (313)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.37  E-value=0.013  Score=55.22  Aligned_cols=155  Identities=12%  Similarity=0.066  Sum_probs=80.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH---HHHhc-CCCCCeEEEEeC-CC---cHHhhhC---
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT---ADISH-MDTNAVVRGFLG-QQ---QLEDALT---  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~---~dl~~-~~~~~~v~~~~~-t~---d~~~al~---  113 (358)
                      ++|.|+||+|.+|.+++..|+..|.  .+++++.+.  .....   ..+.. ......+..+.. -+   +.+++++   
T Consensus         3 k~vlVTGas~GIG~ala~~L~~~G~--~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            3 TVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4789999999999999999999886  566666543  21111   11110 000122322211 12   2334444   


Q ss_pred             --CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          114 --GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                        ..|++|+.||......   .+   -...+..|+.....+++.    +++. ..+.||+++.-....            
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-~~g~IV~isS~~~~~------------  147 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGSVGGLM------------  147 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEGGGTS------------
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCccccc------------
Confidence              3899999998653211   12   223455666555555444    4443 356777765433221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v  218 (358)
                      +.|..-.|+.+......+-..++..+.  +..|++.+
T Consensus       148 ~~~~~~~Y~aSK~a~~~~~~~la~el~--~~gI~v~~  182 (327)
T 1jtv_A          148 GLPFNDVYCASKFALEGLCESLAVLLL--PFGVHLSL  182 (327)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhh--hcCcEEEE
Confidence            222233344444444456666666653  33444433

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.38  E-value=0.00056  Score=60.37  Aligned_cols=64  Identities=13%  Similarity=0.154  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..|||+|||+ |.+|+.++..|...+.  ++.++|++..   ...+..    ..+..   . +..++++++|+||++.
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~----~g~~~---~-~~~~~~~~aDvVilav   81 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLP----RGAEV---L-CYSEAASRSDVIVLAV   81 (201)
Confidence            3468999998 9999999999988776  7888987642   111211    11111   2 4567889999999985

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.33  E-value=0.014  Score=52.70  Aligned_cols=158  Identities=11%  Similarity=0.107  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeC-CC---cHHhhh---
Q 018265           45 PGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQ---QLEDAL---  112 (358)
Q Consensus        45 ~~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al---  112 (358)
                      +.++|.|+||+  |.+|.+++..|+..|.  .++++|.+..   .....++.... ...+..+.. -+   +.++++   
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHH
Confidence            34589999998  7999999999999987  8999988762   22333343210 111221110 11   222222   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          113 ----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       113 ----~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                          ...|++|+.||......   .+   -...+..|+..    .+.+.+.+.+.. .+.||+++......         
T Consensus        96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~---------  165 (267)
T 3gdg_A           96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITASMSGHI---------  165 (267)
T ss_dssp             HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS---------
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEccccccc---------
Confidence                36799999998754221   12   22345556544    444444445543 45666665543221         


Q ss_pred             HhCCCC-CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          179 KVGTYD-PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       179 ~~~~~p-~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                        ..++ ..-.++.+......+-+.++..++  +. +++..+.
T Consensus       166 --~~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~-i~v~~v~  203 (267)
T 3gdg_A          166 --ANFPQEQTSYNVAKAGCIHMARSLANEWR--DF-ARVNSIS  203 (267)
T ss_dssp             --CCSSSCCHHHHHHHHHHHHHHHHHHHHTT--TT-CEEEEEE
T ss_pred             --cCCCCCCCcchHHHHHHHHHHHHHHHHhc--cC-cEEEEEE
Confidence              1121 222345544444567778888875  23 5544443

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.30  E-value=0.017  Score=52.74  Aligned_cols=158  Identities=12%  Similarity=0.108  Sum_probs=92.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---H-------Hhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---L-------EDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al  112 (358)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  +...+.++....  .++..+.. -+|   .       .+.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            44788999999999999999999998  999999976  233334454321  11221110 011   1       2224


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      -.-|++|..||......   .+   -...+..|+.    ..+..++.+.+....+.||+++.-....            +
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~------------~  152 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA------------A  152 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------B
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC------------C
Confidence            56899999999754321   22   2223445543    4566667776555568888886544222            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      .|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       153 ~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V~P  189 (255)
T 4g81_D          153 RPTVAPYTAAKGGIKMLTCSMAAEWA--QFNIQTNAIGP  189 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEee
Confidence            22222344433333456788888885  56676555543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.28  E-value=0.01  Score=56.69  Aligned_cols=99  Identities=23%  Similarity=0.283  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ...++|+|||. |.||+.+|..+...|.  +|..+|.........   ..     ...   ..++++.+++||+|++..-
T Consensus       171 l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~---~g-----~~~---~~~l~ell~~sDvV~l~~P  236 (345)
T 4g2n_A          171 LTGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALE---EG-----AIY---HDTLDSLLGASDIFLIAAP  236 (345)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHH---TT-----CEE---CSSHHHHHHTCSEEEECSC
T ss_pred             cCCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhh---cC-----CeE---eCCHHHHHhhCCEEEEecC
Confidence            34569999998 9999999999987776  999999865221111   11     111   2367899999999999753


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec--CCCCcc
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNST  169 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~~  169 (358)
                      ..  + +++. ++  |    .+.   +....|.+++|+++  ..+|.-
T Consensus       237 lt--~-~T~~-li--~----~~~---l~~mk~gailIN~aRG~~vde~  271 (345)
T 4g2n_A          237 GR--P-ELKG-FL--D----HDR---IAKIPEGAVVINISRGDLINDD  271 (345)
T ss_dssp             CC--G-GGTT-CB--C----HHH---HHHSCTTEEEEECSCGGGBCHH
T ss_pred             CC--H-HHHH-Hh--C----HHH---HhhCCCCcEEEECCCCchhCHH
Confidence            21  1 1111 11  1    122   33334789999986  444443

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.23  E-value=0.0074  Score=57.72  Aligned_cols=68  Identities=25%  Similarity=0.386  Sum_probs=49.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|+.++..+...|.  +|..+|.+.......++.       +..   ..++++.++.||+|++..
T Consensus       165 ~l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~  231 (347)
T 1mx3_A          165 RIRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHC  231 (347)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-------Cee---cCCHHHHHhcCCEEEEcC
Confidence            345679999998 9999999999987776  899999865322222221       111   135778899999999975


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      .
T Consensus       232 P  232 (347)
T 1mx3_A          232 G  232 (347)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.22  E-value=0.0078  Score=56.52  Aligned_cols=67  Identities=22%  Similarity=0.309  Sum_probs=49.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|..++..+...|.  +|..+|.+.......++   .    +..    .++++.+++||+|++..
T Consensus       139 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~  204 (307)
T 1wwk_A          139 ELEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GKF----VDLETLLKESDVVTIHV  204 (307)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEECC
T ss_pred             ccCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----ccc----cCHHHHHhhCCEEEEec
Confidence            345679999998 9999999999988776  99999987633222211   1    111    25678899999999985


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      .
T Consensus       205 p  205 (307)
T 1wwk_A          205 P  205 (307)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.22  E-value=0.079  Score=47.88  Aligned_cols=160  Identities=11%  Similarity=0.108  Sum_probs=89.2

Q ss_pred             CCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcH----------H
Q 018265           45 PGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL----------E  109 (358)
Q Consensus        45 ~~~KI~IiGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~  109 (358)
                      +.+.+.|+||+|  -+|..++..|++.|.  .|++.|+++  .+.....+.+.. ...+..+. .-+|.          .
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQIG   81 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            345788999866  699999999999997  999999986  222223333322 11222211 11221          2


Q ss_pred             hhhCCCCEEEEcCCCCCCC-------CCCHHhH---HHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHH
Q 018265          110 DALTGMDIVIIPAGVPRKP-------GMTRDDL---FNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~-------g~~r~~~---~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                      +.+-..|++|..+|.....       ..+..++   +..|.......++....+. ..+.||+++.-....         
T Consensus        82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~---------  152 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF---------  152 (256)
T ss_dssp             HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS---------
T ss_pred             HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc---------
Confidence            2345799999998864311       1223222   3445555555555555444 357788776433221         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                         +.|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       153 ---~~~~~~~Y~asKaal~~ltr~lA~Ela--~~gIrVN~V~P  190 (256)
T 4fs3_A          153 ---AVQNYNVMGVAKASLEANVKYLALDLG--PDNIRVNAISA  190 (256)
T ss_dssp             ---CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             ---CcccchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEEec
Confidence               222222344443333456778888874  56676655543

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.19  E-value=0.018  Score=57.44  Aligned_cols=117  Identities=18%  Similarity=0.140  Sum_probs=73.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-----hhHHHHHhcCCCCCeEEEEeCC-C---cHHhhhC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFLGQ-Q---QLEDALT  113 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~t-~---d~~~al~  113 (358)
                      ..+..+|.|+||+|.+|..++..|+..|. ..|++++++..     .....++....  ..+..+... +   +.+++++
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dv~d~~~v~~~~~  299 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLG  299 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHH
Confidence            44567999999999999999999998875 25899998652     12223344321  234332211 2   3344555


Q ss_pred             CC------CEEEEcCCCCCCC---CCCH---HhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          114 GM------DIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       114 ~a------DiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ..      |.||+++|.....   ..+.   ...+.-|+.....+.+.+.+.. ...|+++|
T Consensus       300 ~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~-~~~~V~~S  360 (486)
T 2fr1_A          300 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFS  360 (486)
T ss_dssp             TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEE
T ss_pred             HHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC-CCEEEEEc
Confidence            55      9999999975422   1222   2345668888888888877653 34555554

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.14  E-value=0.042  Score=51.68  Aligned_cols=117  Identities=17%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcC--CCCCeEEEEeC-CC---cHHhhhC---
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHM--DTNAVVRGFLG-QQ---QLEDALT---  113 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~--~~~~~v~~~~~-t~---d~~~al~---  113 (358)
                      .++|.|+||+|.+|.+++..|+..|.  .|++.+++.   ......++.+.  .....+..+.. -+   +.+++++   
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            45799999999999999999999997  888877653   11111111110  00122222211 12   2334444   


Q ss_pred             ----CCCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 018265          114 ----GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNP  165 (358)
Q Consensus       114 ----~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  165 (358)
                          ..|++|+.||.....   ..+   -...+..|+.....+++.+    ++. ..+.||++|.-
T Consensus        83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS~  147 (324)
T 3u9l_A           83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISSS  147 (324)
T ss_dssp             HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEecc
Confidence                899999999964321   112   2234566665555554444    544 35667776643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.08  E-value=0.016  Score=52.60  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=30.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .||+|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCC
Confidence            48999998 9999999999998885 4999999875

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.08  E-value=0.031  Score=50.37  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHL   39 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            445899999999999999999999987  899999875

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.07  E-value=0.0076  Score=56.74  Aligned_cols=61  Identities=21%  Similarity=0.238  Sum_probs=47.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|..++..+...|.  ++..+|.+.....            +    ...++++.+++||+|+++.
T Consensus       141 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------------~----~~~~l~ell~~aDvV~l~~  201 (311)
T 2cuk_A          141 DLQGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------------Y----PFLSLEELLKEADVVSLHT  201 (311)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------------S----CBCCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------------c----ccCCHHHHHhhCCEEEEeC
Confidence            445679999998 9999999999988776  8999998652111            0    1235778899999999975

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.06  E-value=0.022  Score=56.30  Aligned_cols=73  Identities=14%  Similarity=0.061  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEE--eCC--CcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF--LGQ--QQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~--~~t--~d~~~al~~aDiVIi  120 (358)
                      +.+||+|+|+ |++|++++..|+..+.  +|+++|++..  .+.++....  ..+..+  ..+  .++.++++++|+||+
T Consensus         2 ~~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~--~a~~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn   74 (450)
T 1ff9_A            2 ATKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGV--QHSTPISLDVNDDAALDAEVAKHDLVIS   74 (450)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHH--HHHHTTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHH--HHHHHHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence            4568999996 9999999999998775  8999998642  222232211  112111  111  245577899999999


Q ss_pred             cCCC
Q 018265          121 PAGV  124 (358)
Q Consensus       121 ~ag~  124 (358)
                      +++.
T Consensus        75 ~a~~   78 (450)
T 1ff9_A           75 LIPY   78 (450)
T ss_dssp             CCC-
T ss_pred             CCcc
Confidence            9864

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=96.06  E-value=0.012  Score=54.83  Aligned_cols=67  Identities=12%  Similarity=0.190  Sum_probs=45.0

Q ss_pred             CCCCEEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEeCCCchhH--HHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           44 SPGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~-~a~~l~~~~~~~el~-L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      |+++||+|||+ |.+|.. .+..+...+-. +++ ++|.+.....  +..+. .   +      ..+|+++.++++|+|+
T Consensus         4 M~~~~igiIG~-G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~~-~---~------~~~~~~~ll~~~D~V~   71 (308)
T 3uuw_A            4 MKNIKMGMIGL-GSIAQKAYLPILTKSERF-EFVGAFTPNKVKREKICSDYR-I---M------PFDSIESLAKKCDCIF   71 (308)
T ss_dssp             -CCCEEEEECC-SHHHHHHTHHHHTSCSSS-EEEEEECSCHHHHHHHHHHHT-C---C------BCSCHHHHHTTCSEEE
T ss_pred             cccCcEEEEec-CHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcC-C---C------CcCCHHHHHhcCCEEE
Confidence            56789999998 999996 77777664433 655 8998762222  22121 1   1      1357888889999999


Q ss_pred             EcC
Q 018265          120 IPA  122 (358)
Q Consensus       120 i~a  122 (358)
                      ++.
T Consensus        72 i~t   74 (308)
T 3uuw_A           72 LHS   74 (308)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            974

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.05  E-value=0.011  Score=55.41  Aligned_cols=70  Identities=14%  Similarity=0.240  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..++|+|||+ |.+|..++..|... + ..+|.++|++....  .++..... ..+..   ..++++++++||+||++.
T Consensus       134 ~~~~igiIG~-G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~~--~~l~~~~~-~~~~~---~~~~~e~v~~aDiVi~at  204 (312)
T 2i99_A          134 SSEVLCILGA-GVQAYSHYEIFTEQFS-FKEVRIWNRTKENA--EKFADTVQ-GEVRV---CSSVQEAVAGADVIITVT  204 (312)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHCC-CSEEEEECSSHHHH--HHHHHHSS-SCCEE---CSSHHHHHTTCSEEEECC
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHHH--HHHHHHhh-CCeEE---eCCHHHHHhcCCEEEEEe
Confidence            3569999998 99999999988765 4 35899999875221  22221100 01222   356789999999999874

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.05  E-value=0.016  Score=55.76  Aligned_cols=100  Identities=20%  Similarity=0.275  Sum_probs=62.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|+.+|..+...|.  +|..+|.........+.  .     +..    .++++.++.||+|++..
T Consensus       173 ~l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~--g-----~~~----~~l~ell~~aDvV~l~~  238 (365)
T 4hy3_A          173 LIAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN--G-----VEP----ASLEDVLTKSDFIFVVA  238 (365)
T ss_dssp             CSSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT--T-----CEE----CCHHHHHHSCSEEEECS
T ss_pred             ccCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc--C-----eee----CCHHHHHhcCCEEEEcC
Confidence            344569999998 9999999999876676  99999986422222211  1     111    35789999999999975


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec--CCCCcc
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNST  169 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~~  169 (358)
                      -..  + +++. ++  |    .   +.+....|.+++|+++  .++|.-
T Consensus       239 Plt--~-~T~~-li--~----~---~~l~~mk~gailIN~aRG~~vde~  274 (365)
T 4hy3_A          239 AVT--S-ENKR-FL--G----A---EAFSSMRRGAAFILLSRADVVDFD  274 (365)
T ss_dssp             CSS--C-C----CC--C----H---HHHHTSCTTCEEEECSCGGGSCHH
T ss_pred             cCC--H-HHHh-hc--C----H---HHHhcCCCCcEEEECcCCchhCHH
Confidence            321  1 1111 11  1    1   2233445789999986  555543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.05  E-value=0.013  Score=54.30  Aligned_cols=97  Identities=20%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+.++|+|+|+ |.+|..++..+...|.  +|..+|++.....  .+....  ...  .. ..++++.++++|+|+++..
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g--~~~--~~-~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLA--RIAEMG--MEP--FH-ISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT--SEE--EE-GGGHHHHTTTCSEEEECCS
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHCC--Cee--cC-hhhHHHHhcCCCEEEECCC
Confidence            45569999998 9999999999988886  8999998642211  122111  111  11 2467788999999999863


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCCCc
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNS  168 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~  168 (358)
                      .    ++-       |.    +   .+....|.+++++++ +|.++
T Consensus       223 ~----~~i-------~~----~---~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          223 A----LVV-------TA----N---VLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             S----CCB-------CH----H---HHHHSCTTCEEEECSSTTCSB
T ss_pred             h----HHh-------CH----H---HHHhcCCCCEEEEecCCCCCC
Confidence            2    211       11    1   222334788999987 77765

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.04  E-value=0.0098  Score=56.76  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=45.9

Q ss_pred             ccccCCCCCCCCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEE-EEeCCCchh--HHHHHhcCCCCCeEEEEeCCCcHHh
Q 018265           35 RMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLH-LYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLED  110 (358)
Q Consensus        35 ~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~-~~~~~~el~-L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~~  110 (358)
                      .++.++...|+++||+|||+ |.+|...+..+. ..+-+ +|+ ++|++....  .+..+.     .....   .+|+++
T Consensus        12 ~~~~~~~~~m~~~rvgiIG~-G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~a~~~g-----~~~~~---~~~~~~   81 (357)
T 3ec7_A           12 SGRENLYFQGMTLKAGIVGI-GMIGSDHLRRLANTVSGV-EVVAVCDIVAGRAQAALDKYA-----IEAKD---YNDYHD   81 (357)
T ss_dssp             ----------CCEEEEEECC-SHHHHHHHHHHHHTCTTE-EEEEEECSSTTHHHHHHHHHT-----CCCEE---ESSHHH
T ss_pred             CCccccccCCCeeeEEEECC-cHHHHHHHHHHHhhCCCc-EEEEEEeCCHHHHHHHHHHhC-----CCCee---eCCHHH
Confidence            44555666778899999998 999999998887 44333 554 889886322  222221     01222   257888


Q ss_pred             hhC--CCCEEEEcC
Q 018265          111 ALT--GMDIVIIPA  122 (358)
Q Consensus       111 al~--~aDiVIi~a  122 (358)
                      .++  +.|+|+++.
T Consensus        82 ll~~~~~D~V~i~t   95 (357)
T 3ec7_A           82 LINDKDVEVVIITA   95 (357)
T ss_dssp             HHHCTTCCEEEECS
T ss_pred             HhcCCCCCEEEEcC
Confidence            776  589999974

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.03  E-value=0.026  Score=54.44  Aligned_cols=70  Identities=17%  Similarity=0.340  Sum_probs=45.3

Q ss_pred             CEEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCchhHH-HHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~-~l~~~~~-~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||+|+||+|.+|..+.. .|...+. ..++.++.... .|.. .++...  ...+..   .++. +.++++|+||.+.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~---~~~~-~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHD---AFDI-ESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEE---TTCH-HHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEe---cCCh-hHhccCCEEEECCC
Confidence            699999999999999998 7777663 45888886544 2221 122111  111221   2243 55899999999865

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.01  E-value=0.0047  Score=60.25  Aligned_cols=75  Identities=24%  Similarity=0.211  Sum_probs=49.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCcHHhhhCC--CCE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLV-SVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLEDALTG--MDI  117 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~-~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~--aDi  117 (358)
                      +||+|+|| |.+|+.++..|++.+.. .++++.|++.  ....+.++.... ...+....    ...++++++++  +|+
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            59999999 99999999999987743 5899999876  222333343211 01122111    11345666776  999


Q ss_pred             EEEcCC
Q 018265          118 VIIPAG  123 (358)
Q Consensus       118 VIi~ag  123 (358)
                      ||++++
T Consensus        80 Vin~ag   85 (405)
T 4ina_A           80 VLNIAL   85 (405)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999976

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=95.98  E-value=0.029  Score=54.24  Aligned_cols=71  Identities=17%  Similarity=0.332  Sum_probs=45.8

Q ss_pred             CCEEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCchhHH-HHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~-~l~~~~~-~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++||+|+||+|.+|.-+.. .|...++ ..++.++.... .|.. .++...  ...+..   .++. +.+.++|+||.+.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~~---~~~~-~~~~~vDvvf~a~   76 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLKD---ATSI-DDLKKCDVIITCQ   76 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCEE---TTCH-HHHHTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEEe---CCCh-hHhcCCCEEEECC
Confidence            4799999999999999998 7777663 45888886543 2221 222211  112221   1233 5578999999986


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      +
T Consensus        77 ~   77 (377)
T 3uw3_A           77 G   77 (377)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.98  E-value=0.02  Score=54.79  Aligned_cols=73  Identities=19%  Similarity=0.325  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ..+|+|||+ |.+|...+..+.......+|.++|++.  .+..+.++... ....+..   ..++++++++||+||++..
T Consensus       129 ~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aTp  203 (350)
T 1x7d_A          129 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVTA  203 (350)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECCC
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEecc
Confidence            459999998 999999887765432345999999876  23333334321 1122332   3578899999999999754

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.98  E-value=0.043  Score=53.81  Aligned_cols=91  Identities=18%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ...+|+|+|. |.||..++..+...|.  +|+.+|+++... .+.  .+.     ...    .++++++++||+||.+.|
T Consensus       219 ~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~--~~G-----~~v----~~Leeal~~ADIVi~atg  284 (435)
T 3gvp_A          219 GGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQAC--MDG-----FRL----VKLNEVIRQVDIVITCTG  284 (435)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH--HTT-----CEE----CCHHHHTTTCSEEEECSS
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHH--HcC-----CEe----ccHHHHHhcCCEEEECCC
Confidence            4569999998 9999999999988777  899999875211 111  111     111    257899999999999744


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      .+   +.-.           .+.   +....|.++|++++.+.
T Consensus       285 t~---~lI~-----------~e~---l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          285 NK---NVVT-----------REH---LDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             CS---CSBC-----------HHH---HHHSCTTEEEEECSSTT
T ss_pred             Cc---ccCC-----------HHH---HHhcCCCcEEEEecCCC
Confidence            32   1111           112   22334789999998664

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.95  E-value=0.015  Score=55.31  Aligned_cols=95  Identities=23%  Similarity=0.295  Sum_probs=60.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|..+|..+...|.  +|..+|.+.....+.+   ..  .  ..    .++++.+++||+|++..
T Consensus       162 ~l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~---~g--~--~~----~~l~ell~~aDvV~l~~  227 (335)
T 2g76_A          162 ELNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSAS---FG--V--QQ----LPLEEIWPLCDFITVHT  227 (335)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHH---TT--C--EE----CCHHHHGGGCSEEEECC
T ss_pred             CCCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhh---cC--c--ee----CCHHHHHhcCCEEEEec
Confidence            345569999998 9999999999987776  8999998653322111   11  1  11    25788899999999985


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      ....   +++. ++  |    .   +.+....|.+++|+++-
T Consensus       228 P~t~---~t~~-li--~----~---~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          228 PLLP---STTG-LL--N----D---NTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CCCT---TTTT-SB--C----H---HHHTTSCTTEEEEECSC
T ss_pred             CCCH---HHHH-hh--C----H---HHHhhCCCCcEEEECCC
Confidence            3221   1111 11  1    1   22333447899999863

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.95  E-value=0.016  Score=55.08  Aligned_cols=79  Identities=22%  Similarity=0.281  Sum_probs=49.4

Q ss_pred             cccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEE-EEEeCCCchhHHHHHhcCCCCCeEEEEeCC
Q 018265           28 GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVL-HLYDVVNTPGVTADISHMDTNAVVRGFLGQ  105 (358)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t  105 (358)
                      |+|..++++.      .+++||+|||+ |.+|...+..+... +-. +| .++|++.....  ++... ..  +..   .
T Consensus         1 ~~~~~~~m~~------~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~--~~~~~-~~--~~~---~   64 (354)
T 3q2i_A            1 GHMIVIPPIT------DRKIRFALVGC-GRIANNHFGALEKHADRA-ELIDVCDIDPAALK--AAVER-TG--ARG---H   64 (354)
T ss_dssp             --CCCCCCCC------SSCEEEEEECC-STTHHHHHHHHHHTTTTE-EEEEEECSSHHHHH--HHHHH-HC--CEE---E
T ss_pred             CceEEeecCC------CCcceEEEEcC-cHHHHHHHHHHHhCCCCe-EEEEEEcCCHHHHH--HHHHH-cC--Cce---e
Confidence            3455555543      34569999998 99999999888876 333 54 48898752211  11111 01  222   2


Q ss_pred             CcHHhhhC--CCCEEEEcC
Q 018265          106 QQLEDALT--GMDIVIIPA  122 (358)
Q Consensus       106 ~d~~~al~--~aDiVIi~a  122 (358)
                      +|+++.++  ++|+|+++.
T Consensus        65 ~~~~~ll~~~~~D~V~i~t   83 (354)
T 3q2i_A           65 ASLTDMLAQTDADIVILTT   83 (354)
T ss_dssp             SCHHHHHHHCCCSEEEECS
T ss_pred             CCHHHHhcCCCCCEEEECC
Confidence            57888886  899999974

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=95.94  E-value=0.03  Score=53.91  Aligned_cols=71  Identities=24%  Similarity=0.472  Sum_probs=46.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ++||+|+||+|.+|..+...|...+. ..+|.++......|....+.    ...+....  .+ .++++++|+||.+.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~----~~~~~~~~--~~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFK----DQDITIEE--TT-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEET----TEEEEEEE--CC-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceec----CCCceEee--CC-HHHhcCCCEEEECCC
Confidence            36999999999999999998887643 45888887654333322211    12232221  23 245789999999765

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.94  E-value=0.018  Score=52.88  Aligned_cols=71  Identities=13%  Similarity=0.213  Sum_probs=50.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+.+||+|||+ |.+|..++..|...+.  +|.++|++..  .+.++....   .+..   ..+++++++++|+||++..
T Consensus       127 ~~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~--~~~~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp  195 (275)
T 2hk9_A          127 VKEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKE--KAIKLAQKF---PLEV---VNSPEEVIDKVQVIVNTTS  195 (275)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHH--HHHHHTTTS---CEEE---CSCGGGTGGGCSEEEECSS
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHH--HHHHHHHHc---CCee---ehhHHhhhcCCCEEEEeCC
Confidence            34579999998 9999999999988886  9999998642  223333221   1232   2366788899999999865


Q ss_pred             CC
Q 018265          124 VP  125 (358)
Q Consensus       124 ~~  125 (358)
                      ..
T Consensus       196 ~~  197 (275)
T 2hk9_A          196 VG  197 (275)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.87  E-value=0.0067  Score=58.30  Aligned_cols=76  Identities=14%  Similarity=0.231  Sum_probs=44.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCC----CeEEEEeCCCcHHhhhCCCCE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTN----AVVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~----~~v~~~~~t~d~~~al~~aDi  117 (358)
                      ..|+++||+|+||+|.+|..++..|...+.+ |++.+......+...+-.+....    .++..    .+ ++.++++|+
T Consensus        12 ~~M~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~----~~-~~~~~~vDv   85 (359)
T 1xyg_A           12 KPEKDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVS----VK-DADFSTVDA   85 (359)
T ss_dssp             ---CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC----GG-GCCGGGCSE
T ss_pred             ccccCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCccccccee----cc-hhHhcCCCE
Confidence            4456689999998899999999999877543 66666543322222221111110    11111    12 345679999


Q ss_pred             EEEcCC
Q 018265          118 VIIPAG  123 (358)
Q Consensus       118 VIi~ag  123 (358)
                      ||++.+
T Consensus        86 Vf~atp   91 (359)
T 1xyg_A           86 VFCCLP   91 (359)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            999864

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=95.87  E-value=0.025  Score=56.01  Aligned_cols=150  Identities=19%  Similarity=0.202  Sum_probs=83.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhh-------CC-C
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL-------TG-M  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~-a  115 (358)
                      +...+.|+||+|.+|..++..|+..|.  .++++|++.......++........+.. ++...+.++++       -+ .
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga--~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~i  289 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA--TVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKV  289 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCC
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCc
Confidence            345899999999999999999999887  8999998652211111111000000110 01112222222       23 8


Q ss_pred             CEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018265          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       116 DiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      |+||+.||+....   .++   -...+.-|+.....+.+.+...   .+.+.||++|.-...           . +.+..
T Consensus       290 d~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~-----------~-g~~g~  357 (454)
T 3u0b_A          290 DILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGI-----------A-GNRGQ  357 (454)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHH-----------H-CCTTC
T ss_pred             eEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhC-----------C-CCCCC
Confidence            9999999975432   122   2234677877777777777654   245677776642211           1 23333


Q ss_pred             cEEEeeeccHHHHHHHHHHHhC
Q 018265          187 RLLGVTMLDVVRANTFVAEVLG  208 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~  208 (358)
                      -.|+.++..-..|...+|..+.
T Consensus       358 ~~YaasKaal~~l~~~la~e~~  379 (454)
T 3u0b_A          358 TNYATTKAGMIGLAEALAPVLA  379 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            3344433223346667777663

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.86  E-value=0.02  Score=54.41  Aligned_cols=67  Identities=25%  Similarity=0.341  Sum_probs=49.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|+.++..+...|.  +|..+|++.......++.       +..    .++++.+++||+|+++.
T Consensus       143 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~----~~l~e~l~~aDiVil~v  208 (333)
T 2d0i_A          143 SLYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKELK-------ARY----MDIDELLEKSDIVILAL  208 (333)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHHT-------EEE----CCHHHHHHHCSEEEECC
T ss_pred             CCCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhcC-------cee----cCHHHHHhhCCEEEEcC
Confidence            445679999998 9999999999988776  999999876332222111       221    25778899999999985


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      .
T Consensus       209 p  209 (333)
T 2d0i_A          209 P  209 (333)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.85  E-value=0.017  Score=55.77  Aligned_cols=118  Identities=19%  Similarity=0.217  Sum_probs=73.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chh------HHHHHhcCCCCCeEEEEeCCCcHHhhh
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPG------VTADISHMDTNAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g------~~~dl~~~~~~~~v~~~~~t~d~~~al  112 (358)
                      +.+..||+|+|| |.+|..++..|...|. .+|+++|++.    ...      ....+.+. ...    .....++++++
T Consensus       189 ~l~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-~~~----~~~~~~L~eav  261 (388)
T 1vl6_A          189 KIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARI-TNP----ERLSGDLETAL  261 (388)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCT----TCCCSCHHHHH
T ss_pred             CCCCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHh-hhc----cCchhhHHHHH
Confidence            345679999999 9999999999988774 5899999972    111      11222221 111    11235789999


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t  192 (358)
                      ++||++|=+.+ |   +.           +-+++.+.+.   ++.+|+=.+||.--.++   +-.++. |   ..+++..
T Consensus       262 ~~ADVlIG~Sa-p---~l-----------~t~emVk~Ma---~~pIIfalSNPt~E~~p---~~a~~~-g---~~i~atG  316 (388)
T 1vl6_A          262 EGADFFIGVSR-G---NI-----------LKPEWIKKMS---RKPVIFALANPVPEIDP---ELAREA-G---AFIVATG  316 (388)
T ss_dssp             TTCSEEEECSC-S---SC-----------SCHHHHTTSC---SSCEEEECCSSSCSSCH---HHHHHT-T---CSEEEES
T ss_pred             ccCCEEEEeCC-C---Cc-----------cCHHHHHhcC---CCCEEEEcCCCCCCCCH---HHHHHh-c---CeEEEeC
Confidence            99999887754 3   21           1123333332   56677777999866654   223343 2   3677764

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.85  E-value=0.019  Score=51.37  Aligned_cols=56  Identities=25%  Similarity=0.390  Sum_probs=42.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh-CCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi~a  122 (358)
                      |||+|||+ |.+|..++..+...++  ++ .++|.+. ..     ..        .   .+|+++.+ .++|+|+++.
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~-~~-----~~--------~---~~~~~~l~~~~~DvVv~~~   58 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRG-EH-----EK--------M---VRGIDEFLQREMDVAVEAA   58 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSC-CC-----TT--------E---ESSHHHHTTSCCSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCc-ch-----hh--------h---cCCHHHHhcCCCCEEEECC
Confidence            69999998 9999999988886666  76 6888764 11     00        1   24677877 6999999985

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.84  E-value=0.028  Score=53.16  Aligned_cols=66  Identities=20%  Similarity=0.246  Sum_probs=48.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|+.+|..+...|.  +|..+|.+....     ..   ....  . ...++++.+++||+|++..
T Consensus       134 ~l~gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~~---~~~~--~-~~~~l~ell~~aDvV~l~l  199 (324)
T 3evt_A          134 TLTGQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPA-----DH---FHET--V-AFTATADALATANFIVNAL  199 (324)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCC-----TT---CSEE--E-EGGGCHHHHHHCSEEEECC
T ss_pred             cccCCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchh-----Hh---Hhhc--c-ccCCHHHHHhhCCEEEEcC
Confidence            344569999998 9999999999988887  999999864210     00   0111  1 1246788999999999974

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.84  E-value=0.0084  Score=57.42  Aligned_cols=83  Identities=14%  Similarity=0.093  Sum_probs=47.8

Q ss_pred             cCCC--CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCC
Q 018265           38 CRAK--GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (358)
Q Consensus        38 ~~~~--~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a  115 (358)
                      ++++  |...+.||+|+||+|.+|..+...|...+.. ||.++......|...+-.+......+...  ..|.++.+.++
T Consensus         3 ~~~~~~~~~~~~~V~IvGAtG~vG~ellrlL~~hP~~-el~~l~S~~~aG~~~~~~~p~~~~~l~~~--~~~~~~~~~~~   79 (351)
T 1vkn_A            3 SDKIHHHHHHMIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS--EFDPEKVSKNC   79 (351)
T ss_dssp             ---------CCEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB--CCCHHHHHHHC
T ss_pred             cccccccccceeEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEeCcccccCChHHhChhhccCceEE--eCCHHHhhcCC
Confidence            3444  4455779999999999999999999988644 88888765433332220000000122221  12443433889


Q ss_pred             CEEEEcCC
Q 018265          116 DIVIIPAG  123 (358)
Q Consensus       116 DiVIi~ag  123 (358)
                      |+||++.+
T Consensus        80 Dvvf~alp   87 (351)
T 1vkn_A           80 DVLFTALP   87 (351)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCC
Confidence            99999754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.79  E-value=0.043  Score=51.66  Aligned_cols=128  Identities=16%  Similarity=0.154  Sum_probs=72.4

Q ss_pred             CCEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh--CCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~-~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--~~aDiVIi~a  122 (358)
                      ++||.|||. |..|.+ +|..|+..|.  +|..+|.+........|....  ..+.  .+ .+. +.+  .++|+||.+.
T Consensus         4 ~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g--i~v~--~g-~~~-~~l~~~~~d~vV~Sp   74 (326)
T 3eag_A            4 MKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG--IDVY--EG-FDA-AQLDEFKADVYVIGN   74 (326)
T ss_dssp             CCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT--CEEE--ES-CCG-GGGGSCCCSEEEECT
T ss_pred             CcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC--CEEE--CC-CCH-HHcCCCCCCEEEECC
Confidence            469999999 999996 8888999998  999999865222223344322  2232  23 233 335  4899999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHh-hCCCeEEEEec--CCCCccHHHHHHHHHHhCCCCC
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLIS--NPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~viv~t--NP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |+|...- ......+++++++.+. +.+.+ ...+..+|-+|  |==...+.++.++++.. |.++
T Consensus        75 gi~~~~p-~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~-g~~~  137 (326)
T 3eag_A           75 VAKRGMD-VVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA-GLAP  137 (326)
T ss_dssp             TCCTTCH-HHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT-TCCC
T ss_pred             CcCCCCH-HHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc-CCCc
Confidence            8874321 1112223445555443 22222 12233455554  33335556655655543 5443

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.79  E-value=0.023  Score=52.43  Aligned_cols=157  Identities=16%  Similarity=0.106  Sum_probs=90.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEE-EeCCCcH-------HhhhCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRG-FLGQQQL-------EDALTGMD  116 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~-~~~t~d~-------~~al~~aD  116 (358)
                      +.+.|+||++-+|..++..|+..|.  .|++.|++.  +...+.++....  ..+.. .+...+.       .+.+-.-|
T Consensus        30 KvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~g~~~--~~~~~Dv~~~~~v~~~~~~~~~~~G~iD  105 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEIGGGA--VGIQADSANLAELDRLYEKVKAEAGRID  105 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTTC--EEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCe--EEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4678899999999999999999998  999999876  333344443211  01110 0000111       23345679


Q ss_pred             EEEEcCCCCCC-C--CCC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 018265          117 IVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       117 iVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      ++|..||.... +  ..+   -...+..|+.-...+++....+- ..+.||+++.-....            +.|..-.|
T Consensus       106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~------------~~~~~~~Y  173 (273)
T 4fgs_A          106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST------------GTPAFSVY  173 (273)
T ss_dssp             EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS------------CCTTCHHH
T ss_pred             EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc------------CCCCchHH
Confidence            99999986432 1  122   23445667666666665554432 245677765433211            23333334


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      +.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       174 ~asKaav~~ltr~lA~Ela--~~gIrVN~V~P  203 (273)
T 4fgs_A          174 AASKAALRSFARNWILDLK--DRGIRINTLSP  203 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--TSCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhc--ccCeEEEEEee
Confidence            4443333457788888875  66676655553

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.78  E-value=0.012  Score=55.05  Aligned_cols=62  Identities=24%  Similarity=0.224  Sum_probs=47.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ....++|+|||. |.+|+.++..+...|.  +|..+|++.. .   +   . .    .   ...++++.++.||+|+++.
T Consensus       121 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~---~---~-~----~---~~~~l~ell~~aDvV~l~~  182 (303)
T 1qp8_A          121 LIQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E---G---P-W----R---FTNSLEEALREARAAVCAL  182 (303)
T ss_dssp             CCTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C---S---S-S----C---CBSCSHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c---c---C-c----c---cCCCHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999988786  8999997643 1   0   1 1    0   1235678899999999985

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.76  E-value=0.062  Score=53.93  Aligned_cols=119  Identities=17%  Similarity=0.117  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-----hhHHHHHhcCCCCCeEEEEeC-CCc---HHhhhC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT  113 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~  113 (358)
                      ..+..+|.|+||+|.+|..++..|+..|. ..|++++++..     .....++...  ...+..+.. -+|   ++++++
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~  332 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGA-ERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVT  332 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCC-cEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHh
Confidence            34557999999999999999999988875 25889988651     1223344432  233443321 123   334444


Q ss_pred             C--CCEEEEcCCCCCCC---CCC---HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          114 G--MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       114 ~--aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      +  .|+||+++|.....   ..+   -...+.-|+.....+.+.+....+...|+++|.
T Consensus       333 ~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS  391 (511)
T 2z5l_A          333 AYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS  391 (511)
T ss_dssp             HSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred             cCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence            3  89999999975422   112   223456677777777776654412334555443

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.74  E-value=0.026  Score=52.50  Aligned_cols=73  Identities=19%  Similarity=0.173  Sum_probs=45.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ++||+|+||+|.+|+.++..+...+-..=+..+|.+.....-.|+.....  ...+.   .+.|+++.+.++|+||-.
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~---v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVR---ITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCB---CBSCHHHHTTSCSEEEEC
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCce---eeCCHHHHhcCCCEEEEc
Confidence            46999999779999999998887653322345576531111112221111  11222   246888889999999865

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.71  E-value=0.028  Score=53.71  Aligned_cols=75  Identities=16%  Similarity=0.174  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCchhHHHHHhcCCC--------CCeEEEEeCCCcHHhhhCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDT--------NAVVRGFLGQQQLEDALTGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~~~g~~~dl~~~~~--------~~~v~~~~~t~d~~~al~~a  115 (358)
                      +++||+|+||+|.+|..++..|...+.. ||+.+ |.+...+...+-.+...        ...+...  ..|. ++++++
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~-~~~~~v   78 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYL-ELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIV--STNY-EDHKDV   78 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEE--CSSG-GGGTTC
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCc-EEEEEecChhhcCCCHHHhcCcccccccccCCceeEEe--eCCH-HHhcCC
Confidence            4579999998899999999988776533 77666 33322222121111100        0111121  1243 446899


Q ss_pred             CEEEEcCC
Q 018265          116 DIVIIPAG  123 (358)
Q Consensus       116 DiVIi~ag  123 (358)
                      |+|+++.+
T Consensus        79 DvVf~atp   86 (350)
T 2ep5_A           79 DVVLSALP   86 (350)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999854

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=95.70  E-value=0.04  Score=53.27  Aligned_cols=75  Identities=24%  Similarity=0.316  Sum_probs=44.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCchhH-HHHHhcCC---------CCCeEEEEeCCCcHHhhh
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGV-TADISHMD---------TNAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L-~D~~~~~g~-~~dl~~~~---------~~~~v~~~~~t~d~~~al  112 (358)
                      |+++||+|+||+|.+|..+...|...+.+ ||.. .......|. ..|.....         ....+..    .+.++.+
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~-el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~----~~~~~~~   91 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPEF-EIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE----CKPEGNF   91 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE----SSSCTTG
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCCc-eEEEeeccccccCCCHHHhcccccccccccccccceEEe----Cchhhhc
Confidence            56689999999999999999988776644 7754 444332232 22221110         0112222    1222257


Q ss_pred             CCCCEEEEcCC
Q 018265          113 TGMDIVIIPAG  123 (358)
Q Consensus       113 ~~aDiVIi~ag  123 (358)
                      .++|+||.+.+
T Consensus        92 ~~~Dvvf~alp  102 (381)
T 3hsk_A           92 LECDVVFSGLD  102 (381)
T ss_dssp             GGCSEEEECCC
T ss_pred             ccCCEEEECCC
Confidence            89999999854

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=95.70  E-value=0.12  Score=47.02  Aligned_cols=157  Identities=17%  Similarity=0.106  Sum_probs=89.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCc----------HHhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQ----------LEDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d----------~~~al~  113 (358)
                      +.+.+.|+||++-+|..++..|+..|.  .++++|++... .....+.........-.. .-+|          ..+.+-
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~-Dv~~~~~v~~~v~~~~~~~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA--IPVVFARHAPDGAFLDALAQRQPRATYLPV-ELQDDAQCRDAVAQTIATFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCCHHHHHHHHHHCTTCEEEEC-CTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCcccHHHHHHHHhcCCCEEEEEe-ecCCHHHHHHHHHHHHHHhC
Confidence            345788999999999999999999997  89999987722 222222221111111000 0111          122346


Q ss_pred             CCCEEEEcCCCCCCCC--CCHH---hHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          114 GMDIVIIPAGVPRKPG--MTRD---DLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g--~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      .-|++|..||......  .+..   ..+..|+    ...+...+.+++.  .+.||+++.-....            +.|
T Consensus        83 ~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~~~------------~~~  148 (258)
T 4gkb_A           83 RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--RGAIVNISSKTAVT------------GQG  148 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCTHHHH------------CCS
T ss_pred             CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEeehhhcc------------CCC
Confidence            7899999999754332  2322   2334454    3455566666543  36777776433111            333


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       149 ~~~~Y~asKaav~~ltr~lA~ela--~~gIrVN~V~  182 (258)
T 4gkb_A          149 NTSGYCASKGAQLALTREWAVALR--EHGVRVNAVI  182 (258)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            333444444334457788888875  5666655554

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=95.68  E-value=0.048  Score=54.30  Aligned_cols=67  Identities=13%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC------CCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKIN------PLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~------~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      +||+|||. |.+|.+++..|...      |+  ++++.+...  ....+.+..-......      ..+..+++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G~~v~d~t------a~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAGFTEESGT------LGDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTTCCTTTTC------EEEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCCCEEecCC------CCCHHHHHhcCCEE
Confidence            59999998 99999999999887      76  666555433  2222222211100000      12467999999999


Q ss_pred             EEcC
Q 018265          119 IIPA  122 (358)
Q Consensus       119 Ii~a  122 (358)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9984

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=95.65  E-value=0.02  Score=53.90  Aligned_cols=70  Identities=9%  Similarity=0.088  Sum_probs=45.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVII  120 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi  120 (358)
                      ++++||+|||+ |.+|...+..+...+.. +|+ ++|.+......  +......+  +   ..+|+++.+.  ++|+|++
T Consensus         3 m~~~~igiiG~-G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~--~~~~~~~~--~---~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            3 LDKIRYGIMST-AQIVPRFVAGLRESAQA-EVRGIASRRLENAQK--MAKELAIP--V---AYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             CCCEEEEECSC-CTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHHH--HHHHTTCC--C---CBSSHHHHHHCTTCSEEEE
T ss_pred             CCeEEEEEECc-hHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHHH--HHHHcCCC--c---eeCCHHHHhcCCCCCEEEE
Confidence            45679999998 99999999888875433 555 78887622221  11110001  1   2357888886  8999999


Q ss_pred             cC
Q 018265          121 PA  122 (358)
Q Consensus       121 ~a  122 (358)
                      +.
T Consensus        74 ~t   75 (330)
T 3e9m_A           74 PT   75 (330)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.64  E-value=0.024  Score=55.06  Aligned_cols=68  Identities=19%  Similarity=0.227  Sum_probs=48.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ....++|+|||. |.||+.++..+...|.  +|..+|... ......++.       +..   ..++++.++.||+|++.
T Consensus       188 ~l~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G-------~~~---~~~l~ell~~aDvV~l~  254 (393)
T 2nac_A          188 DLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLN  254 (393)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEEC
T ss_pred             cCCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcC-------cee---cCCHHHHHhcCCEEEEe
Confidence            445679999998 9999999999987776  899999875 222222221       111   13578889999999998


Q ss_pred             CC
Q 018265          122 AG  123 (358)
Q Consensus       122 ag  123 (358)
                      .-
T Consensus       255 ~P  256 (393)
T 2nac_A          255 CP  256 (393)
T ss_dssp             SC
T ss_pred             cC
Confidence            53

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.63  E-value=0.023  Score=54.54  Aligned_cols=76  Identities=20%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi  120 (358)
                      +.+.++|+|+|+ |.+|..++..+...|.  +|+++|++... ..+.+.  ...  .+.. .....++++.++++|+||.
T Consensus       163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~--~g~--~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          163 GVAPASVVILGG-GTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDV--FGG--RVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             BBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--TTT--SEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHh--cCc--eEEEecCCHHHHHHHHhCCCEEEE
Confidence            455689999999 9999999999998887  89999987521 112111  111  1211 1122456788899999999


Q ss_pred             cCCCC
Q 018265          121 PAGVP  125 (358)
Q Consensus       121 ~ag~~  125 (358)
                      +++.+
T Consensus       236 ~~g~~  240 (369)
T 2eez_A          236 AVLVP  240 (369)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            98765

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=95.60  E-value=0.0025  Score=58.63  Aligned_cols=63  Identities=10%  Similarity=0.124  Sum_probs=36.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||+ |.+|..++..|... .  ++ .++|++...  ...+... ...   .   ++|+++++++||+||++.
T Consensus         3 m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~--~~~~~~~-~g~---~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDR--ARNLAEV-YGG---K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHH--HHHHHHH-TCC---C---CCSSCCCCC---CEEECS
T ss_pred             ceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHH--HHHHHHH-cCC---c---cCCHHHHHhcCCEEEEeC
Confidence            69999998 99999999988766 4  77 489886521  1122111 011   1   235567789999999985

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=95.60  E-value=0.018  Score=58.11  Aligned_cols=66  Identities=26%  Similarity=0.314  Sum_probs=48.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ...++|+|||. |.+|+.++..+...|.  +|+.+|.+.....+.++.       +..    .++++++++||+|+++..
T Consensus       140 l~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~~~----~~l~e~~~~aDvV~l~~P  205 (529)
T 1ygy_A          140 IFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFISVHLP  205 (529)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEEEECCC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------cEE----cCHHHHHhcCCEEEECCC
Confidence            45579999998 9999999999988887  999999865322222221       111    156788999999999853

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.57  E-value=0.017  Score=55.97  Aligned_cols=123  Identities=19%  Similarity=0.277  Sum_probs=73.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-hhHHHHHhcCCC-C-CeEEEEeCCCcHHhhhCCCCEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~-~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      +.+..||+|+|| |..|.+++..+...|. .+|+++|.+. . .+...+|.+... + ......+...++++++++||++
T Consensus       185 ~l~d~kVVi~GA-GaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          185 SLDEVSIVVNGG-GSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             CTTSCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            455679999999 9999999998887775 6999999864 1 111001221110 0 0000001134688999999997


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t  192 (358)
                      |=+.+ |   |.           +.+++.+.|.   ++++|+=.+||..-.++   +..++. |   ..+++..
T Consensus       263 IG~Sa-p---gl-----------~T~EmVk~Ma---~~pIIfalsNPt~E~~p---e~a~~~-g---~~i~atG  311 (398)
T 2a9f_A          263 IGVSA-P---GV-----------LKAEWISKMA---ARPVIFAMANPIPEIYP---DEALEA-G---AYIVGTG  311 (398)
T ss_dssp             EECCS-T---TC-----------CCHHHHHTSC---SSCEEEECCSSSCSSCH---HHHHTT-T---CSEEEES
T ss_pred             EecCC-C---CC-----------CCHHHHHhhC---CCCEEEECCCCCccCCH---HHHHHh-C---CeEEEeC
Confidence            76643 2   32           1223333343   78899889999866654   222332 2   3577774

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.54  E-value=0.0026  Score=58.90  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      +++|||+|+|++|.+|+.++..+...+-. +|+ .+|.+.......|+.....  ...+..   ++|+++.++++|+||.
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~-elva~~d~~~~~~~g~d~~~~~g~~~~~v~~---~~dl~~~l~~~DvVID   78 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFID   78 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEE
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCchhhhhhhHHHHcCCCcCCcee---cCCHHHHhcCCCEEEE
Confidence            45689999998899999999887754322 665 7787541111112221110  111222   2467788889999995


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ec---cH
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-ML---DV  196 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t-~l---ds  196 (358)
                      .+. |               ....++++...+.+.+   +++.+| .....- .+.+.++..- ...+++.. .+   --
T Consensus        79 ft~-p---------------~~~~~~~~~a~~~G~~---vVigTt-G~~~e~-~~~L~~~a~~-~~vv~a~N~siGvn~~  136 (273)
T 1dih_A           79 FTR-P---------------EGTLNHLAFCRQHGKG---MVIGTT-GFDEAG-KQAIRDAAAD-IAIVFAANFSVGVNVM  136 (273)
T ss_dssp             CSC-H---------------HHHHHHHHHHHHTTCE---EEECCC-CCCHHH-HHHHHHHTTT-SCEEECSCCCHHHHHH
T ss_pred             cCC-h---------------HHHHHHHHHHHhCCCC---EEEECC-CCCHHH-HHHHHHhcCC-CCEEEEecCcHHHHHH
Confidence            431 1               2344555555555432   344455 222111 1222332211 11233221 11   12


Q ss_pred             HHHHHHHHHHhCCCCCCCceEEEEecCC
Q 018265          197 VRANTFVAEVLGLDPREVDVPVVGGHAG  224 (358)
Q Consensus       197 ~R~~~~lA~~l~v~~~~v~~~v~G~hg~  224 (358)
                      .++....|+.|+   .+.++-++--|+.
T Consensus       137 ~~l~~~aa~~~~---~~~dieiiE~Hh~  161 (273)
T 1dih_A          137 LKLLEKAAKVMG---DYTDIEIIEAHHR  161 (273)
T ss_dssp             HHHHHHHHHHHT---TTSEEEEEEEECT
T ss_pred             HHHHHHHHHhcC---CCCCEEEEEeecC
Confidence            355667777775   4566777777775

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.52  E-value=0.033  Score=52.95  Aligned_cols=100  Identities=15%  Similarity=0.261  Sum_probs=57.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhH-HHHHh-cCCCCCeEEEEeCCCcHHhhh-CCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV-TADIS-HMDTNAVVRGFLGQQQLEDAL-TGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~-~~dl~-~~~~~~~v~~~~~t~d~~~al-~~aDiVI  119 (358)
                      ++||+|+||+|.+|..+...|...+.+ ++..+....   ..|. ..|.. +......+.... ..|. +++ +++|+||
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~-~~~~-~~~~~~~Dvvf   80 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGIVELPLQP-MSDI-SEFSPGVDVVF   80 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEE-ESSG-GGTCTTCSEEE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCccceeEec-cCCH-HHHhcCCCEEE
Confidence            469999999999999999988876543 777665433   2332 22221 011111222211 0033 345 8999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      ++.+                -..-+++++.+.+.  .+++|-.|.+-
T Consensus        81 ~a~p----------------~~~s~~~~~~~~~~--g~~vIDlSa~f  109 (337)
T 3dr3_A           81 LATA----------------HEVSHDLAPQFLEA--GCVVFDLSGAF  109 (337)
T ss_dssp             ECSC----------------HHHHHHHHHHHHHT--TCEEEECSSTT
T ss_pred             ECCC----------------hHHHHHHHHHHHHC--CCEEEEcCCcc
Confidence            9854                13344555555443  45666666653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.51  E-value=0.023  Score=54.90  Aligned_cols=113  Identities=28%  Similarity=0.301  Sum_probs=67.6

Q ss_pred             CCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCe-----EEEE----------
Q 018265           39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV-----VRGF----------  102 (358)
Q Consensus        39 ~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~-----v~~~----------  102 (358)
                      +..+..++.||+|||+ |.+|...+..+...|.  +|..+|++.. ...+.++.-......     ....          
T Consensus       177 ~~~~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~  253 (381)
T 3p2y_A          177 TAAGTVKPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERA  253 (381)
T ss_dssp             CSSCEECCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHH
T ss_pred             cccCCcCCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHh
Confidence            4445677889999999 9999999998887776  8999999762 223333210000000     0000          


Q ss_pred             eCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       103 ~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      ....++++++++||+||.++..|.+... .  +      +.++..+.+   .|.++|+.++-+-
T Consensus       254 ~~~~~l~e~l~~aDIVI~tv~iPg~~ap-~--L------vt~emv~~M---kpGsVIVDvA~d~  305 (381)
T 3p2y_A          254 QQQQALEDAITKFDIVITTALVPGRPAP-R--L------VTAAAATGM---QPGSVVVDLAGET  305 (381)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCCTTSCCC-C--C------BCHHHHHTS---CTTCEEEETTGGG
T ss_pred             hhHHHHHHHHhcCCEEEECCCCCCcccc-e--e------ecHHHHhcC---CCCcEEEEEeCCC
Confidence            0113567889999999998766632110 0  0      112333333   4788888876443

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=95.51  E-value=0.022  Score=53.61  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+|+|||+ |.+|...+..|.....+.+|.++|++.....+.++.... ...+..   . ++++++++||+||.+..
T Consensus       122 ~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~---~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          122 SVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM---A-APADIAAQADIVVTATR  192 (313)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE---C-CHHHHHHHCSEEEECCC
T ss_pred             cEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE---e-CHHHHHhhCCEEEEccC
Confidence            48999998 999999988887643366999999984344444443211 122332   2 67899999999998754

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.50  E-value=0.032  Score=52.58  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=48.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ..+|+|||+ |.+|...+..|.......++.++|++.  ++..+.++....  ..+. .   .++++++ ++|+|+++..
T Consensus       125 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~--~~~~-~---~~~~e~v-~aDvVi~aTp  196 (322)
T 1omo_A          125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISAS-V---QPAEEAS-RCDVLVTTTP  196 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEE-E---CCHHHHT-SSSEEEECCC
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC--ceEE-E---CCHHHHh-CCCEEEEeeC
Confidence            459999998 999999988887633356999999876  233333333211  1222 2   4678899 9999999753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.50  E-value=0.029  Score=54.10  Aligned_cols=78  Identities=23%  Similarity=0.196  Sum_probs=53.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +.+..+|+|+|+ |.+|..++..+...|.  +|..+|++... ..+.+..  .....+. .....++.+.++++|+||.+
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~~~~~~--g~~~~~~-~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGA--TVTVLDINIDKLRQLDAEF--CGRIHTR-YSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT--TTSSEEE-ECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhc--CCeeEec-cCCHHHHHHHHcCCCEEEEC
Confidence            456789999998 9999999999988887  89999987521 1122211  1111111 11123567888999999999


Q ss_pred             CCCCC
Q 018265          122 AGVPR  126 (358)
Q Consensus       122 ag~~~  126 (358)
                      .+.|.
T Consensus       239 ~~~p~  243 (377)
T 2vhw_A          239 VLVPG  243 (377)
T ss_dssp             CCCTT
T ss_pred             CCcCC
Confidence            88764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.48  E-value=0.015  Score=56.69  Aligned_cols=109  Identities=23%  Similarity=0.298  Sum_probs=65.5

Q ss_pred             CCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCe---------EEEEeC-----
Q 018265           40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV---------VRGFLG-----  104 (358)
Q Consensus        40 ~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~---------v~~~~~-----  104 (358)
                      ..++.++.||+|+|+ |.+|...+..+...|.  ++..+|++.. ...+.++.-......         ...+..     
T Consensus       184 ~~g~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~  260 (405)
T 4dio_A          184 AAGTVPAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGE  260 (405)
T ss_dssp             TTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CH
T ss_pred             cCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchh
Confidence            344567789999999 9999999999988886  8999999872 222333210000000         000100     


Q ss_pred             -----CCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          105 -----QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       105 -----t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                           ..++++++++||+||.++..|-+... .  ++      .++..+   .-.|.++|+.++
T Consensus       261 ~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap-~--Lv------t~emv~---~Mk~GsVIVDvA  312 (405)
T 4dio_A          261 YQVKQAALVAEHIAKQDIVITTALIPGRPAP-R--LV------TREMLD---SMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCCCSSSCCC-C--CB------CHHHHT---TSCTTCEEEETT
T ss_pred             hhhhhHhHHHHHhcCCCEEEECCcCCCCCCC-E--Ee------cHHHHh---cCCCCCEEEEEe
Confidence                 12567889999999998876632210 0  11      123333   334788888876

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.45  E-value=0.038  Score=51.23  Aligned_cols=77  Identities=21%  Similarity=0.284  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      .+..+++|+|+ |.+|.+++..|+..|. .+|.++|++..  ...+.++........+.... ..+++++++++|+||.+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~-~~~l~~~l~~~DiVIna  201 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIEDVIAAADGVVNA  201 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC-STTHHHHHHHSSEEEEC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC-HHHHHHHHhcCCEEEEC
Confidence            45569999998 9999999999998775 37999998752  22333343211112333321 24677888999999997


Q ss_pred             CC
Q 018265          122 AG  123 (358)
Q Consensus       122 ag  123 (358)
                      ..
T Consensus       202 Tp  203 (283)
T 3jyo_A          202 TP  203 (283)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.45  E-value=0.026  Score=55.99  Aligned_cols=71  Identities=20%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc----HHhhhCCCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ----LEDALTGMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~-~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~al~~aDiVI  119 (358)
                      +||+|||+ |.||+.++..|++.. + ..+|++.|.+.......+...    ........+ .|    +.+.+++.|+||
T Consensus        14 ~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g----~~~~~~~Vdadnv~~~l~aLl~~~DvVI   88 (480)
T 2ph5_A           14 NRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYG----VSFKLQQITPQNYLEVIGSTLEENDFLI   88 (480)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHT----CEEEECCCCTTTHHHHTGGGCCTTCEEE
T ss_pred             CCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcC----CceeEEeccchhHHHHHHHHhcCCCEEE
Confidence            58999998 999999999998864 3 368999998763222222221    122221111 22    334566779999


Q ss_pred             EcC
Q 018265          120 IPA  122 (358)
Q Consensus       120 i~a  122 (358)
                      .++
T Consensus        89 N~s   91 (480)
T 2ph5_A           89 DVS   91 (480)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            854

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=95.44  E-value=0.015  Score=52.77  Aligned_cols=152  Identities=15%  Similarity=0.133  Sum_probs=86.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCc------HHhhhCCCCEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ------LEDALTGMDIV  118 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d------~~~al~~aDiV  118 (358)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|++....     ... ....+..+.. -+|      .-+.+..-|++
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~~-----~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL   82 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADGV-----HAP-RHPRIRREELDITDSQRLQRLFEALPRLDVL   82 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTST-----TSC-CCTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-----hhh-hcCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            34889999999999999999999998  999999976110     000 0111111110 111      22446788999


Q ss_pred             EEcCCCCCCCC-CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          119 IIPAGVPRKPG-MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       119 Ii~ag~~~~~g-~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      |..||..+... .+   -...+..|+.    ..+...+.+++.  .+.||+++.-....            +.|..-.|+
T Consensus        83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~~~------------~~~~~~~Y~  148 (242)
T 4b79_A           83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIASMYSTF------------GSADRPAYS  148 (242)
T ss_dssp             EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECCGGGTS------------CCSSCHHHH
T ss_pred             EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEeeccccC------------CCCCCHHHH
Confidence            99999754221 12   1223444543    344445555443  47888876533221            222222333


Q ss_pred             eeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      .+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       149 asKaav~~ltr~lA~Ela--~~gIrVNaV~P  177 (242)
T 4b79_A          149 ASKGAIVQLTRSLACEYA--AERIRVNAIAP  177 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hcCeEEEEEEe
Confidence            333333456788888875  56676555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	4e-49
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	9e-49
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	5e-44
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	5e-36
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	2e-32
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	2e-30
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	4e-30
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	6e-30
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	9e-30
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	1e-29
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	2e-29
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	2e-29
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	3e-29
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	3e-29
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	1e-28
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	3e-28
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	7e-28
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	6e-26
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	2e-25
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	2e-25
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	2e-25
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	6e-25
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	6e-25
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	6e-25
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	7e-24
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	2e-23
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	2e-23
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	3e-23
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	4e-23
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	4e-23
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	5e-23
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-22
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	2e-22
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	2e-22
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	2e-22
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	5e-22
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	7e-22
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	2e-20
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	3e-20
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	7e-19
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	8e-19
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	1e-18
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	1e-18
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	2e-16
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	5e-16
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	2e-15
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	9e-13

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  161 bits (407), Expect = 4e-49
 Identities = 84/167 (50%), Positives = 114/167 (68%)

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTD 250
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P       ++  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 251 RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFF 310
           RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  + G  GV+EC++V S  T+ P+F
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 311 ASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
           ++ + LG+ GIE+   +G ++ +E   + +A  EL  SI+KG  FV+
Sbjct: 121 STPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVK 167

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  159 bits (404), Expect = 9e-49
 Identities = 89/168 (52%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTD 250
           VT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV      T  E+  LT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS-FTEQEVADLTK 59

Query: 251 RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFF 310
           RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 119

Query: 311 ASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 358
           +  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct: 120 SQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 167

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  146 bits (370), Expect = 5e-44
 Identities = 93/143 (65%), Positives = 116/143 (81%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
           ST+PI AEVFKK G Y+P ++ G
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  125 bits (316), Expect = 5e-36
 Identities = 83/145 (57%), Positives = 101/145 (69%), Gaps = 3/145 (2%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                   G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DATPAL-EGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           VN+TV IAAEV KK G YD  +L G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  117 bits (294), Expect = 2e-32
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTNA---VV 99
            +AV GAAG I   L   +    +        L L     +      ++    ++   ++
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AI 158
           R         +    +D  ++    PR PGM R  L +IN  I     + +     K   
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 159 VNLISNPVNSTVPIAAE 175
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  111 bits (279), Expect = 2e-30
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ----VKPSCSLTPTEIDYL 248
           +LD  R  +F+A  LG+  ++++  V+GGH    +  +       +  S  L    ID L
Sbjct: 3   VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKL 62

Query: 249 TDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELP 308
            +R +NGG E+VE     GSA  + A +  +  ++     R                +  
Sbjct: 63  VERTRNGGAEIVEHL-KQGSAFYAPASSVVEMVESI-VLDRKRVLPCAVGLEGQYGIDKT 120

Query: 309 FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
           F    V+LGR G+E+IY +  L++ +   L+K+ K +  + + 
Sbjct: 121 FVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKM 162

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  110 bits (276), Expect = 4e-30
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+AV+GA G +G  LA       +   + L D+          D+ H  +        G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              E      D+V+I AG  +KPG +R +L      I+K +   + K  P AI  LI+NP
Sbjct: 62  DDPEIC-RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    IA  V +K+      ++ G
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  110 bits (275), Expect = 6e-30
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 12/149 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVS--------VLHLYDVVNTPGVTADISHMDTNAVV 99
           +VAV GAAG IG  L   +    ++         +L +   +                ++
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AI 158
            G       + A    D  ++    PRK GM R DL  +N  I       +A+   K   
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           V ++ NP N+   IA   +K     +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  109 bits (273), Expect = 9e-30
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+GA G +G   A  +    L   L L DVV     G   D+       +    +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV 191
           ++    +A            +R++G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  108 bits (272), Expect = 1e-29
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+  +GA G +G   A    +N  V  + L D+      G   D++H          +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                 L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV 191
           ++    I      K        + G+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  108 bits (271), Expect = 2e-29
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           K+ ++G  G +G   A  + +      + L DV         +  +      R       
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
               L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               +    F K    DP+++ G
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  109 bits (272), Expect = 2e-29
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 7/163 (4%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL----TPTEIDYL 248
           +LD  R  TF+A   G+  ++V   ++GGH    +            +     P  +  +
Sbjct: 3   VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQI 62

Query: 249 TDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELP 308
            +R + GG E+V      GSA  + A A A+  +A L+  +    V         + ++ 
Sbjct: 63  VERTRKGGGEIVNLLKT-GSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIY 121

Query: 309 FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
           F    V LG  G+E+I  L PLNE E A L  + K +  ++  
Sbjct: 122 FG-VPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDT 162

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  108 bits (270), Expect = 3e-29
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 48  KVAVLGAAGGIGQPLAML-----MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV--- 99
           +V V GAAG I   L        +       +L L D+    GV   +     +  +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
           +  +   + E A   +D+ I+   +PR+ GM R DL   N  I K     + K   K++ 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 160 NL-ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
            + + NP N+    A++    +     +    +
Sbjct: 125 VIVVGNPANTNCLTASKSAPSI---PKENFSCL 154

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  107 bits (269), Expect = 3e-29
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVA++GA G +G   A  M +    + L L DV     +   +        +        
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
               +   D++++ AG  RKPG TR DL   N  I K + + I K     ++ ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               +     +K       +++G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  106 bits (266), Expect = 1e-28
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFL 103
           KV+V+GAAG +G      + +  +   +   D+ +    T G  AD +H    A      
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIAYDSNTR 59

Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
            +Q   +   G D+V+I AG+PR+PG TR DL   NA I++ +   + +     I    S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           NPV+    +      + G    ++++G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQ 106
           K++++GA G +G   A  +    L  ++ L  V   P G   D+            +   
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
                    D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLG 190
           ++   +AAEV      +  +R++G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  104 bits (260), Expect = 7e-28
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGF 102
           +P  K+ ++G+ G IG  +A L+    L  V+    V N P G   D SH +  A     
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKA 157
           +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP A
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
            + +++NPV+  V +      +       +++G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 99.3 bits (247), Expect = 6e-26
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KV ++G  G +G   A  M    +     + DVV        +   D  A          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
                   D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               I      K   +  +R++G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.6 bits (245), Expect = 2e-25
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ V+G  G +G   A+ + +  L   L L D       G   D+ H          +  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFG 79

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +          +VII AG     G TR DL   N  I+K +  G+ +  P   + +++NP
Sbjct: 80  KDYNV-SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    +      K+  +   R++G
Sbjct: 139 VDILTYVVW----KISGFPVGRVIG 159

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 99.0 bits (246), Expect = 2e-25
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 13/177 (7%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LD  RA   +A  LG+   +V   ++ G+   T  P ++  K         +      
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 252 IQNGGTEVVEAKTGAG---------SATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
                 E +      G         S+ +S A A          G      V        
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120

Query: 303 T---VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 356
               V +   ++  V +     + +  L P+N++ R  ++   KELA   +    F+
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFL 176

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 98.4 bits (244), Expect = 2e-25
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 13/172 (7%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP--------T 243
             LD  R    + E LG+        V+G H              S  L P         
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 244 EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST 303
           +   L   + +   EV++ K     A   +  + A  A+  ++ L     V         
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWA---IGLSVADLAETIMKNLCRVHPVSTMVKDFYG 119

Query: 304 VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
           + +  F +    L   GI  I  +  L   E   L+K+   L   IQK + F
Sbjct: 120 IKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATTLW-DIQKDLKF 169

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 97.0 bits (241), Expect = 6e-25
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF 102
           P  K+ V+G  G +G   A+ +    L   L L DV+     G   D+ H          
Sbjct: 19  PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKI 77

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           +  +          IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++
Sbjct: 78  VADKDYSVT-ANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVV 136

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           SNPV+    +      K+      R++G
Sbjct: 137 SNPVDILTYVT----WKLSGLPKHRVIG 160

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 96.7 bits (240), Expect = 6e-25
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 46  GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTNAVVRGFL 103
           G +V V+GA G +G      +    +   + L D   +  +    D +H    A     +
Sbjct: 6   GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI 64

Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
                +D     D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +
Sbjct: 65  WHGDYDD-CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           NPV+    I      K      +R++G
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIG 146

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 96.7 bits (240), Expect = 6e-25
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTNAVVRGFLGQQ 106
           KVA++G+ G IG  +  L  +  L  V+    V   P   A D+SH+ +       +  +
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 107 -QLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
              E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK  + 
Sbjct: 68  YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           +++NP++  V +  E            + G
Sbjct: 128 VVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 94.5 bits (234), Expect = 7e-24
 Identities = 24/172 (13%), Positives = 59/172 (34%), Gaps = 17/172 (9%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT---------- 241
           T LD  R    +A+  G++ + V   + G H    +    S       ++          
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 242 --PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY 299
               + + +   ++N   +++  K     A   +  +     +A L        V     
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYA---IGMSGVDIIEAVLHDTNRILPVSSMLK 117

Query: 300 VASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
               ++++        L R G+    +  P+++ E A L+++ + L  +  +
Sbjct: 118 DFHGISDICMS-VPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 167

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 93.4 bits (231), Expect = 2e-23
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 8/171 (4%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPS---CSLTPTEIDYL 248
           T LD  R    + +   +DPR VD  ++G H G +     S              E    
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVS 59

Query: 249 TDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVT--- 305
            D +      V        +   +  Y          + +  D   +             
Sbjct: 60  DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGL 119

Query: 306 ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 356
              +  +   +G  G+++I    PL+  E   ++ +   L   +  G++ +
Sbjct: 120 NDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDGLAEL 169

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 92.1 bits (228), Expect = 2e-23
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTNAVVRGFL--- 103
           KV ++GA+G +G   A+L+   P +  L L     +   +      +             
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 104 --GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           I+NPV+     A         ++  ++ G
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 93.0 bits (230), Expect = 3e-23
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 11/171 (6%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP-------TE 244
           T LD  R    +AE++ +D R V   ++G H                ++          +
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIK 60

Query: 245 IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV 304
            D L    ++      E     G+    +A A A+ + A L        +    Y+    
Sbjct: 61  EDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAV--LPLSVYMDGQY 118

Query: 305 TEL-PFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVS 354
                +  +   + R GI+ I  + PL ++E   ++K+  +L   +    +
Sbjct: 119 GINDLYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDAFA 168

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 91.7 bits (227), Expect = 4e-23
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 12/149 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G  +A  +    +       D           D      N    G +  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 106 QQLEDALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L   D+VI   G  +     P   R       + +V+++   + +     ++ +
Sbjct: 62  NDWAA-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           ISNPV+    +   +F+ V  +   +++G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 92.2 bits (228), Expect = 4e-23
 Identities = 34/170 (20%), Positives = 52/170 (30%), Gaps = 7/170 (4%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T+LD  R  T +A+  G  PR V V V+G H    +      +     L           
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVT------ 305
            +       + K  A              A A    +       +     S         
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV 121

Query: 306 ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
           +    +  V LG+ G+E I  L  LNE E     K+   L  +I +  + 
Sbjct: 122 KDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINEITAE 170

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.2 bits (228), Expect = 5e-23
 Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 10/170 (5%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
             LD  R    + E LG++P      V+G H   ++           +L        TD+
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 252 IQNGGTEVVEAKTG--------AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST 303
            +     V +             G  + ++  +    A + L+ L+    V         
Sbjct: 63  NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHG 122

Query: 304 VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 353
           + E  F +    LG +GI +   +  +   E   L+K+   L   +QK +
Sbjct: 123 IKEEVFLSIPCVLGESGITDFVKV-NMTAEEEGLLKKSADTLWN-MQKNL 170

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 90.7 bits (224), Expect = 1e-22
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 3/160 (1%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
             LD  R    ++E      + V+  ++G H G   +P+ S+V    +      D     
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQL 61

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFA 311
           + +     ++     G+     A   A   +A L                    +   F 
Sbjct: 62  LGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHED-TAFG 120

Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
             V LG  G+EEI     L++YE+  +  A ++L+    K
Sbjct: 121 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 159

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 90.3 bits (223), Expect = 2e-22
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 3/165 (1%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T+LD  R    V E   LDPR V    +G H G +     S V+       T  D     
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFA 311
           +     E  +      +     +Y  A  A    + +  DA                + +
Sbjct: 61  LAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMG-MYLS 119

Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 356
               +GR G+    +L  L   E+  L +++  +     + V  +
Sbjct: 120 YPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIVDTL 163

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 90.3 bits (223), Expect = 2e-22
 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LD +R    +A+  G+   EV   ++G H G +++PLLS              +    
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS----TVTEL 307
           I     +V               +  A      +R +  +   +                
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRD 121

Query: 308 PFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
                 V++GR GIEE+ S+  L++ E     K+ + +    ++
Sbjct: 122 VCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 164

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 90.3 bits (223), Expect = 2e-22
 Identities = 21/173 (12%), Positives = 54/173 (31%), Gaps = 15/173 (8%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT---------- 241
           T+LD  R    + E   + P+ V   ++G H    +            +           
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 242 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVA 301
             +++ +   +++   +++E K               +        +   +  ++  Y  
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE 120

Query: 302 STVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVS 354
             V    +      + R GI E+  +  LN+ E+     +   L   + +  +
Sbjct: 121 RDV----YIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARAFT 168

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 5e-22
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 18/174 (10%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPT-------- 243
             LD  R    +AE LG+ P      ++G H G + + + S V  +              
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 244 ----EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY 299
                   +   +     EV++ K     A   +  + A   ++ L+ L     V     
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWA---IGLSVADLIESMLKNLSRIHPVSTMVK 118

Query: 300 VASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 353
               +    F +    L   G+  + +   L + E A L+K+   L   IQK +
Sbjct: 119 GMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVAQLKKSADTLWD-IQKDL 170

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 89.1 bits (220), Expect = 7e-22
 Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 16/171 (9%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT---------- 241
           T+LD +R    ++E LG+D + V   ++G H    +           ++           
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 242 -PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300
              +   + + ++  G  +++ K               +        +R    VI   Y 
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMY- 119

Query: 301 ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
                E    +    +   G++E+     L   E   L  + +++   + +
Sbjct: 120 ---GIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 166

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 84.9 bits (209), Expect = 2e-20
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 14/162 (8%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---------LSQVKPSCSLTPT 243
           +LD  R   ++++ L + PR+V+  +VG H    +L           L +   +  ++  
Sbjct: 2   VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61

Query: 244 EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST 303
           E++ + DR  N   E+V        A  +     A+     L+ +   + ++E  Y  S 
Sbjct: 62  ELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSD 121

Query: 304 VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL 345
           +    F  + V LG  G+E++  L  LN  E+A  ++A  E 
Sbjct: 122 I----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAET 158

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 84.5 bits (208), Expect = 3e-20
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTE-------- 244
           MLD  R   +VA+ L + PR+V   V+G H    +  +         +            
Sbjct: 3   MLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 245 -IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST 303
            ++ + +  +  G E+V    G GSA  + A +A   A + L   +              
Sbjct: 63  QLEEIAEHTKVSGGEIV-RFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYG 121

Query: 304 VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 356
           + +  F      +G AGIE +  L  LNE E+   +K+  ++   + K V+ +
Sbjct: 122 LKD-MFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMA-LNKAVAAL 171

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 81.0 bits (199), Expect = 7e-19
 Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 7/164 (4%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSLTPTEIDY 247
           T LD  RA   +A+  G     +    V G+   T+ P L   +    P+  L   E   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST--VT 305
                          +    S+  S A AA +       G      V           + 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP 121

Query: 306 ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI 349
           E   ++  V         +  L  +NE+ R  +E   +EL   +
Sbjct: 122 EGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEITAQELLDEM 164

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 80.6 bits (198), Expect = 8e-19
 Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 7/158 (4%)

Query: 194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID------Y 247
           LD  RA + +A   G     ++   V G+   T+       +   +     I+       
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTEL 307
                       +    G  SA  +   A     D  L        +   +  +  + E 
Sbjct: 63  TFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG 122

Query: 308 PFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL 345
             F   V       + +  L  ++ + +  +     EL
Sbjct: 123 VIFGFPVTTENGEYKIVQGL-SIDAFSQERINVTLNEL 159

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 80.8 bits (199), Expect = 1e-18
 Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 12/164 (7%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV-------KPSCSLTPTE 244
           T LD  RA   +A   G+   +V    + G+   T +P            K     T   
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 245 IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST- 303
            +  T  +Q  G  +++      S+  S A + A    + +             Y     
Sbjct: 61  EEEFTITVQKRGGALIQKWG--RSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 118

Query: 304 --VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL 345
             + E   F+   R    G  E+ +    +++    ++K++ EL
Sbjct: 119 YGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAEL 162

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 80.1 bits (197), Expect = 1e-18
 Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 32/167 (19%)

Query: 48  KVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGF 102
           ++AV+G  G    P  +   +    +  +  +  YD+      +  D          +  
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA----------- 151
           +     E A+     VI         G   D+   +  G++     G+            
Sbjct: 61  ISDT-FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 152 --------KCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                   +    A +   +NP         E  +     + ++ +G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 73.9 bits (181), Expect = 2e-16
 Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 36/172 (20%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP--GVTADISH---MDTNAV 98
           K+A +G  G    P  +   I       V  L L D+                 ++   V
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI-------- 150
                       AL G D V     V       +D+   +  G++     G         
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 151 ------------AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                        + CP A +   +NP      +  E   +      ++++G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLRY--TKQEKVVG 167

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 72.7 bits (178), Expect = 5e-16
 Identities = 32/162 (19%), Positives = 50/162 (30%), Gaps = 34/162 (20%)

Query: 47  FKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTNAV 98
           F + + G  G    P   L +L  +    +  L LYD      +      D+      A 
Sbjct: 4   FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI-REKAP 61

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA------- 151
              F      E+A T +D V+    V +      D+   +  G+V     G         
Sbjct: 62  DIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 152 -------------KCCPKAIVNLISNPVNSTVPIAAEVFKKV 180
                        K  P A +   SNP      I AE  +++
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVAEATRRL 159

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 27/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)

Query: 45  PGFKVAVLGAAGGIGQPLAM---LMKINPL-VSVLHLYDVV--NTPGVTADISHM-DTNA 97
           P  K+ ++GA G     L +   L K   L  S + L D+       +        +   
Sbjct: 1   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 59

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI------------------- 138
               F     L+D +   D VI  A V     + +                         
Sbjct: 60  ADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDY 119

Query: 139 -------NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK 178
                         +   I K  PKA     +NP+     +      
Sbjct: 120 YTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 63.1 bits (153), Expect = 9e-13
 Identities = 23/160 (14%), Positives = 50/160 (31%), Gaps = 12/160 (7%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
             LD  R    +      + R     ++G H G ++    S           + + + + 
Sbjct: 2   NQLDSQRLKERLYNAGARNIR--RAWIIGEH-GDSMFVAKSLADFDG---EVDWEAVEND 55

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFA 311
           ++    EV++ K    +     A A  +   A +                  +  +    
Sbjct: 56  VRFVAAEVIKRKG---ATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIENV-AVG 111

Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
              +LG+ G E       L++ E   L  + K L   +++
Sbjct: 112 VPAKLGKNGAEVADI--KLSDEEIEKLRNSAKILRERLEE 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	99.98
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.98
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.98
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.98
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.97
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.97
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.97
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.97
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.96
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.96
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.96
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.96
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.96
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.96
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.96
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.96
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.96
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.95
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.95
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.95
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.95
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.94
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.94
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.93
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.93
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.92
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.91
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.9
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.52
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.81
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.65
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.59
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.5
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.48
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.45
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.44
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.44
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.41
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.37
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.37
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.33
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.33
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.3
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.3
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.28
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.27
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.25
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.22
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.13
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.06
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.06
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.0
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.97
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.96
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.88
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.88
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	97.81
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	97.79
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	97.79
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.77
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.72
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.71
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	97.67
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.67
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.66
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	97.64
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.54
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	97.52
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.51
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.49
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.49
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.48
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.48
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.47
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.47
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.47
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.44
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.43
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.39
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.29
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.26
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.26
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.24
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.22
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.2
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.18
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.16
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.12
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.07
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.04
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.0
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.99
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.96
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.94
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.91
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.85
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.84
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.75
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.75
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.73
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.73
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.69
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.69
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.66
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.65
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.64
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.61
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.6
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.59
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.59
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.58
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.58
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.57
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.56
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.55
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.54
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.54
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.53
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.52
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.51
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.5
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.49
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.49
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.49
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.47
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.44
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.44
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.44
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.41
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.4
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.39
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.36
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.36
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.31
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.26
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.26
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.26
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.25
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.24
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.23
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.18
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.06
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.06
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.03
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.99
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.99
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.98
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.97
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.95
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.93
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.91
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.86
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.86
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.81
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.8
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.77
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.77
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	95.75
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.69
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.69
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.62
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.61
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.58
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.53
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.45
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.35
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	95.34
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.23
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.14
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.13
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.97
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.94
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.93
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.86
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.85
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.84
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	94.84
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.69
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	94.66
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.64
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.51
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.43
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	94.41
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.35
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.31
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.29
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.25
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.22
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	94.2
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.19
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.17
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.1
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.1
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.9
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.89
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.83
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	93.79
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.71
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	93.65
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.61
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.57
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.55
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.51
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	93.47
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.4
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.39
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.38
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.36
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.28
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.16
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.14
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.11
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.94
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.83
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.72
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	92.72
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.72
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.62
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.56
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	92.42
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	92.42
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.42
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	92.41
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.41
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.36
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.34
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.33
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	92.29
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.25
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	92.22
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.22
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.21
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.18
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.11
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.08
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	92.07
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.02
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	92.0
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.98
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.89
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.77
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.74
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	91.66
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.62
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	91.57
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.39
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.18
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.07
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.05
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	90.97
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.94
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.92
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	90.79
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.79
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.72
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	90.34
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.23
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.18
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	90.1
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	89.81
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.69
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	89.68
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.65
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.51
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.36
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.98
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.76
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.16
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	87.88
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	87.73
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	87.57
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.45
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	87.45
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.23
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	86.99
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.95
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.66
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.44
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	86.33
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.31
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.19
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	84.82
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	84.71
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.41
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	84.4
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	84.16
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	84.14
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	84.11
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	83.92
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	83.88
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	83.2
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	82.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.78
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	82.71
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.59
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	82.4
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	82.32
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	82.26
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	82.22
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.74
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.18
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.15
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.11
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	80.31
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	80.31
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	80.29
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	80.05

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=6.8e-35  Score=246.32  Aligned_cols=143  Identities=65%  Similarity=1.102  Sum_probs=133.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK  127 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~  127 (358)
                      ||+||||+|+||+++++.|+.+++++||+|+|+++.+++++|++|.........+..+.|++++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999977999999999999999999999999988899999999987655555544567778999999999999999999


Q ss_pred             CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       128 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      +||+|.+++..|++++++++++|.+++|+++++++|||+|++|+++++++++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999988889999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-34  Score=243.67  Aligned_cols=143  Identities=59%  Similarity=0.972  Sum_probs=131.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      |||+|||++|+||+++++.|+.+ ++.+||+|+|+++ ++|+++||+|+........+.+++++ ++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~-~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCH-HHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCc-cccCCCCEEEECCCc
Confidence            79999997799999999998754 7888999999977 78999999998766666666556665 789999999999999


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      |+++|++|.+++..|.+++++++++|.+++|+++++++|||+|+++++++++++++++||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=3.3e-34  Score=241.69  Aligned_cols=139  Identities=28%  Similarity=0.439  Sum_probs=124.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |.||+|||+ |+||+++|+.++.+++++||+|+|+++  ++|+++||+|...+ ...... .++|+ ++++|||+||+++
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~-~~~~~-~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID-GSDDP-EICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceee-cCCCH-HHhhCCcEEEEec
Confidence            469999998 999999999999999999999999988  78999999998532 222222 24565 7799999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      |.|+++|++|.+++..|++++++++++|.+++|++++|++|||+|+||+++    ++.+|||++||||+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~----~~~sg~p~~rViG~  142 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEEC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHH----HHHHCCChhhccCC
Confidence            999999999999999999999999999999999999999999999998764    78899999999996

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=6.9e-34  Score=239.62  Aligned_cols=138  Identities=29%  Similarity=0.495  Sum_probs=123.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||+ |+||+++++.++.+++++||+|+|+++  ++|+++||+|+..  ....+.. .++|+ ++++|||+||+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~-~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccc-cCCCH-HHhccccEEEEec
Confidence            79999998 999999999999999999999999988  7899999999742  1122222 24675 7899999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      |.|+++|++|.+++.+|++++++++++|.++||+++++++|||+|++|+++    ++++|||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViG~  142 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEEC
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH----HHHHCCChhcEecC
Confidence            999999999999999999999999999999999999999999999998764    78899999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.4e-33  Score=239.55  Aligned_cols=138  Identities=25%  Similarity=0.366  Sum_probs=124.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      ..||+|||| |+||+++++.|+++++++||+|+|+++  ++|+++||+|+..+  ..++..  +.|+ ++++|||+||++
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d~-~~l~daDvvvit   81 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGDY-DDCRDADLVVIC   81 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECCG-GGTTTCSEEEEC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECCH-HHhccceeEEEe
Confidence            349999998 999999999999999999999999987  78999999997542  234443  3565 789999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      +|.++++|++|.+++.+|++++++++++|.++||+++++++|||+|++|+++    ++++|||++||||+
T Consensus        82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~----~k~sg~p~~rViG~  147 (148)
T d1ldna1          82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGS  147 (148)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEEC
T ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHH----HHHHCcChhheecC
Confidence            9999999999999999999999999999999999999999999999998764    78899999999996

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=1.2e-32  Score=232.08  Aligned_cols=137  Identities=28%  Similarity=0.410  Sum_probs=116.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .||+|||| |+||+++++.++.+++++||+|+|+++  ++|+++||.|+.. .+....+  +.|+ ++++|||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~--~~~~-~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGDY-SDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CG-GGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe--eCcH-HHhCCCceEEEecc
Confidence            49999998 999999999999999999999999988  7899999999753 2334443  3464 78999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      .++++|++|.+++.+|++++++++++|.+++|+++++++|||+|++|+++    ++.+|||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~----~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHH----HHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999998764    78899999999996

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.6e-33  Score=232.80  Aligned_cols=137  Identities=29%  Similarity=0.515  Sum_probs=122.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |||+|||| |+||+++++.++.+++.+||+|+|+++  ++|+++|+.|... .......  +.|+ ++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~--~~~~-~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--AGDY-ADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--ECCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc--CCcH-HHhcCCCEEEEecc
Confidence            79999998 999999999999999999999999987  7899999998643 2333333  2464 78999999999999


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      .++++|++|.+++.+|++++++++++|.++||++|++++|||+|++|+++    ++.+|||++||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~----~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999998764    77889999999995

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.98  E-value=1.3e-32  Score=231.51  Aligned_cols=136  Identities=29%  Similarity=0.407  Sum_probs=120.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ||+||||+|+||+++++.++.+++++||+|+|++.    ++|+++||.|+.. ....+..+  .|+ ++++|||+||+++
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~--~~~-~~~~~aDiVvita   78 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GGY-EDTAGSDVVVITA   78 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CCG-GGGTTCSEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEee--CCH-HHhhhcCEEEEec
Confidence            99999976999999999999999999999999864    5789999998532 22333332  455 7799999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      |.|+++||+|.+++..|++++++++++|.+++|+++++++|||+|+||+++    ++++|||++||||
T Consensus        79 G~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~----~k~sg~~~~rViG  142 (142)
T d1o6za1          79 GIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL----YEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH----HHHSSSCGGGEEE
T ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHHH----HHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999998664    8899999999998

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.98  E-value=1e-32  Score=236.33  Aligned_cols=138  Identities=26%  Similarity=0.397  Sum_probs=123.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      ++.||+|||+ |+||+++++.|+..++++||+|+|+++  ++|+++||+|+..+  .....  .+.|+ ++++|||+||+
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~--~~~d~-~~~~~adiVVi   94 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV--ADKDY-SVTANSKIVVV   94 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEE--ECSSG-GGGTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEE--eccch-hhcccccEEEE
Confidence            3459999998 999999999999999999999999987  78999999997532  22222  34565 78999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      ++|.++++|++|++++..|++++++++++|.+++|+++++++|||+|+||+++    ++.+|||++||||
T Consensus        95 tAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~----~k~sglp~~rViG  160 (160)
T d1i0za1          95 TAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT----WKLSGLPKHRVIG  160 (160)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             ecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999998765    7888999999998

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.98  E-value=6.1e-33  Score=234.01  Aligned_cols=138  Identities=35%  Similarity=0.522  Sum_probs=122.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||| |+||+++++.|+..++.+||+|+|+++  ++++++|++|...  ....+.. .++| +++++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~-~~~~-~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT-GSND-YADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEE-EESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEE-ecCC-HHHhcCCeEEEEEE
Confidence            79999998 999999999999999999999999988  6888899988742  2223332 2356 47899999999999


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      |.|+++|++|.+++.+|++++++++++|.++||++|++++|||+|++|+++    ++.+|||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~----~~~sg~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH----HHHhCCChHhEeeC
Confidence            999999999999999999999999999999999999999999999998764    67789999999996

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.98  E-value=3.3e-33  Score=236.43  Aligned_cols=137  Identities=18%  Similarity=0.278  Sum_probs=116.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .||+|||+ |+||+++++.|+.+++.+||+|+|+++  ++|+++||+|+..+  ......  +.|+ ++++|||+||+++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~--~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee--ccCH-HHhccccEEEEec
Confidence            49999998 999999999999999999999999988  68999999997532  233333  3565 7799999999999


Q ss_pred             CCCC----CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          123 GVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       123 g~~~----~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      |.++    ++|++|.+++..|+++++++++.|+++||++|+|++|||+|+||+++    ++++|||++||||.
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF----QHVTGFPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH----HHHhCCCccceeCc
Confidence            9877    67899999999999999999999999999999999999999998764    78899999999995

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=5.3e-32  Score=228.61  Aligned_cols=138  Identities=31%  Similarity=0.500  Sum_probs=119.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCC--CCeEEEE-eCCCcHHhhhCCCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--NAVVRGF-LGQQQLEDALTGMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~-~~t~d~~~al~~aDiVI  119 (358)
                      |||+||||+|+||+++++.|+.+++++||+|+|+++    ++|+++||.|+..  ...++.. ..+.|+ ++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~-~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL-RIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG-GGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH-HHhccceEEE
Confidence            799999977999999999999999999999999986    4688999999632  2333332 224464 7899999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      ++||.|+++|++|.|++..|+++++++++.|.++||++++ ++|||+|+||+++    ++.+|||++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~----~k~sg~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKA----LVDSKFERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHH----HHHHCCCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999998864 5899999998764    7888999999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=1.6e-32  Score=232.32  Aligned_cols=139  Identities=26%  Similarity=0.407  Sum_probs=114.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +.|||+|||+ |+||+++++.|+++++++||+|+|+++  ++|+++||+|+... ......  +.|+ ++++|||+||++
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~--~~d~-~~~~~adivvit   79 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGEY-SDCKDADLVVIT   79 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe--eccH-HHhccccEEEEe
Confidence            3579999998 999999999999999999999999988  78999999997532 222333  3576 679999999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      +|.|+++|++|.+++..|++++++++++|.++||+++++++|||+|++|+++    ++.++||++||||+
T Consensus        80 ag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~----~k~sg~p~~rViG~  145 (146)
T d1ez4a1          80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGS  145 (146)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH----HHHHCcCccceecC
Confidence            9999999999999999999999999999999999999999999999998764    78889999999996

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2e-32  Score=234.45  Aligned_cols=142  Identities=24%  Similarity=0.360  Sum_probs=125.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCe-EEEEeCCCcHHhhhCCCCEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~-v~~~~~t~d~~~al~~aDiV  118 (358)
                      ..+++.||+|||+ |+||+++|+.|+..++++||+|+|+++  ++|+++||+|+..... -... .+.|+ ++++|||+|
T Consensus        15 ~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~-~~~d~-~~~~~adiv   91 (159)
T d2ldxa1          15 DKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIV-FGKDY-NVSANSKLV   91 (159)
T ss_dssp             CCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEE-EESSG-GGGTTEEEE
T ss_pred             ccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEE-eccch-hhhccccEE
Confidence            3355679999998 999999999999999999999999987  7899999999864211 1212 23565 779999999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      |+++|.|+++|++|.+++..|++++++++++|.+++|+++++++|||+|+||+++    ++.+|||++||||
T Consensus        92 vitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~----~k~sg~p~~rV~G  159 (159)
T d2ldxa1          92 IITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV----WKISGFPVGRVIG  159 (159)
T ss_dssp             EECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH----HHHHCSCTTTEEE
T ss_pred             EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999998764    7888999999998

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=2.6e-31  Score=230.19  Aligned_cols=167  Identities=50%  Similarity=0.836  Sum_probs=145.6

Q ss_pred             eeeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      +|.||++||++++|++||+++++|+++|+|+||+++++|+||.+.++..+..++++++.+++++++++|++.+++.+++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            37899999999999999999999999999999776889988888887788888999999999999999999886667788


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQ  350 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  350 (358)
                      ++++.++++++.+++.+..+...+.++++....+.+++|+|+||+||++|+++++++++|+++|+++|++|++.||+.++
T Consensus        81 ~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk~~I~  160 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK  160 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999877654444555444322235689999999999999999999757999999999999999999999


Q ss_pred             Hhhhhhh
Q 018265          351 KGVSFVR  357 (358)
Q Consensus       351 ~~~~~~~  357 (358)
                      ++++|++
T Consensus       161 ~g~~fi~  167 (169)
T d1mlda2         161 KGEEFVK  167 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999985

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=1.9e-31  Score=227.62  Aligned_cols=139  Identities=34%  Similarity=0.603  Sum_probs=122.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCcHHhhhCCCCE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~aDi  117 (358)
                      +|++||+|||| |.||+++++.|++.++. ||+|+|+++  ++|+++|+.|...    ...+.   .+++++++++|||+
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~adi   79 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR---AEYSYEAALTGADC   79 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE---EECSHHHHHTTCSE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHHHhhhccccCCeeEEe---ccCchhhhhcCCCe
Confidence            34569999998 99999999999988864 999999988  7899999998632    12233   24677899999999


Q ss_pred             EEEcCCCCCCCCC-----CHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          118 VIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       118 VIi~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      ||+++|.++++|+     +|.+++..|++++++++++|.++||+++++++|||+|++|+++    ++.+|||++||||+
T Consensus        80 Vvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~----~~~sg~p~~rViG~  154 (154)
T d1pzga1          80 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGM  154 (154)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             EEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHhCcChhcEecC
Confidence            9999999999985     8999999999999999999999999999999999999998765    77889999999996

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=1.1e-31  Score=227.90  Aligned_cols=138  Identities=30%  Similarity=0.547  Sum_probs=120.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +.||+|||+ |+||+++++.++++++ .||+|+|+++  ++|+++|++|...  ....... .+.+ +++++|||+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~-~~~~-~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS-GSNT-YDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEE-EECC-GGGGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEE-eccc-ccccCCCcEEEEe
Confidence            569999998 9999999999988886 5999999988  7899999999742  2222222 1234 5889999999999


Q ss_pred             CCCCCCCCCC-----HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          122 AGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       122 ag~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      +|.++++|++     |++++..|++++++++++|+++||+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~~~sg~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH----HHHHCCCchheecc
Confidence            9999999876     999999999999999999999999999999999999998764    78899999999997

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.9e-30  Score=224.15  Aligned_cols=167  Identities=54%  Similarity=0.809  Sum_probs=145.1

Q ss_pred             eeeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      +|.||++||++++|+++|+++++|+++|+|+||+.+++|++|++.. ..+++.+++++.+++++++.++++.+.|++++.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            3789999999999999999999999999999998666676565543 457788899999999999999999887888999


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQ  350 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  350 (358)
                      ||+|.++++++.+|+.+.++...+..+++.....++++|||+||++|++|+++++++++|+++|+++|++|+++|++.++
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~~~lk~~I~  159 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIA  159 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998775544544444444446789999999999999999999756999999999999999999999


Q ss_pred             HhhhhhhC
Q 018265          351 KGVSFVRK  358 (358)
Q Consensus       351 ~~~~~~~~  358 (358)
                      ++++|+++
T Consensus       160 ~~~~fi~~  167 (167)
T d2cmda2         160 LGQEFVNK  167 (167)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999875

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.97  E-value=8.1e-31  Score=225.87  Aligned_cols=153  Identities=28%  Similarity=0.490  Sum_probs=138.5

Q ss_pred             eccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-----CCChhHHHHHHHHHhcCcceeeecccCCC
Q 018265          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg  267 (358)
                      +||++||++++|+++|+++++|+++|||+||+ +++|+||++++.+     .++++.++++.++++++|+++++.+ |+|
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            69999999999999999999999999999999 8999999999854     2566667899999999999998865 689


Q ss_pred             cccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHH
Q 018265          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL  345 (358)
Q Consensus       268 ~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l  345 (358)
                      ++.|++|.++.+++++++.+.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus        81 sa~~a~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~l-~Ls~~E~~~l~~sa~~l  156 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIV  156 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHheeccCC---CEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999865   477776 568888 67999999999999999999995 99999999999999999


Q ss_pred             HHHHHH
Q 018265          346 AGSIQK  351 (358)
Q Consensus       346 ~~~~~~  351 (358)
                      ++.++.
T Consensus       157 ~~~i~~  162 (163)
T d1guza2         157 DENCKM  162 (163)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            998864

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=8.1e-31  Score=222.34  Aligned_cols=145  Identities=17%  Similarity=0.237  Sum_probs=128.2

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCC-ceEEEEecCCCcccccccccCCCCCCChhHHHHHHHHHhcCcceeeecccCCCccc
Q 018265          192 TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  270 (358)
                      |.|||+||++.|++..   +.++ +++|+|+||+ ++||+||.+++...   .+++++.++++.++++|++.   ||+|+
T Consensus         2 t~LDsaR~r~~l~~~~---~~~v~~a~ViGeHGd-s~vp~~S~~~i~g~---~~~~~i~~~v~~~g~eIi~~---kG~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAG---ARNIRRAWIIGEHGD-SMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKR---KGATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTT---CBSCCCCCEEBCSST-TCEECGGGCCCBSC---CCHHHHHHHHHTTHHHHHHH---HSSCC
T ss_pred             CccHHHHHHHHHHccC---CCCcceeEEEecCCC-ccccccccccccCc---cchhHhHHHHHHHHHHhhhh---cccee
Confidence            5799999999998765   4455 8999999999 99999999988542   35678999999999999985   48999


Q ss_pred             ccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHH
Q 018265          271 LSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS  348 (358)
Q Consensus       271 ~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~  348 (358)
                      ||+|.++++++++|++|++   .++|++ +++|+| .+|+|+|+||++|++|+ +++++ +|+++|+++|++|++.||+.
T Consensus        72 ~gia~a~~~iv~aIl~d~~---~v~pvs~~l~geyG~~dv~lsvP~vig~~Gv-ei~~l-~L~~~E~~~l~~Sa~~ik~~  146 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGA-EVADI-KLSDEEIEKLRNSAKILRER  146 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEE-EECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCC---CceeeeEEeccccCCCCEEEEeEEEECCCce-EEEcC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999965   599997 679999 67999999999999998 58895 99999999999999999998


Q ss_pred             HHH
Q 018265          349 IQK  351 (358)
Q Consensus       349 ~~~  351 (358)
                      +++
T Consensus       147 i~~  149 (152)
T d1ojua2         147 LEE  149 (152)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            865

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=7.3e-31  Score=221.09  Aligned_cols=134  Identities=28%  Similarity=0.548  Sum_probs=111.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      +||+|||+ |+||+++|+.|+.+++. |++|+|+++  ++++++|+.|...    ...+..   ++|+ ++++|||+||+
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~---~~d~-~~~~~advvvi   75 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEe---cCcH-HHhcCCCEEEE
Confidence            59999998 99999999999988875 899999988  7899999999853    223332   4576 67999999999


Q ss_pred             cCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      ++|.|+++|++|.+++..|++++++++++|.++||+++++++|||+|++||++    ++.+|||++||||
T Consensus        76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~----~~~sglp~~rViG  141 (142)
T d1uxja1          76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIG  141 (142)
T ss_dssp             CCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999998875    6788999999998

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=1.2e-30  Score=225.11  Aligned_cols=153  Identities=31%  Similarity=0.490  Sum_probs=138.9

Q ss_pred             eccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-----CCChhHHHHHHHHHhcCcceeeecccCCC
Q 018265          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg  267 (358)
                      +||++||+.++|+++|+++++|+++|||+||+ +++|+||++++++     .+++..++++.++++++|++|++++ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            59999999999999999999999999999998 8999999998853     2455678899999999999998876 679


Q ss_pred             cccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHH
Q 018265          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL  345 (358)
Q Consensus       268 ~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l  345 (358)
                      ++.|++|.++++++++|+.+.+   .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus        81 s~~~a~a~a~~~i~~~i~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  156 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAV  156 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHhCCCC---ceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999865   477776 579998 67899999999999999999996 99999999999999999


Q ss_pred             HHHHHH
Q 018265          346 AGSIQK  351 (358)
Q Consensus       346 ~~~~~~  351 (358)
                      +++++.
T Consensus       157 k~~i~~  162 (164)
T d1uxja2         157 RATLDT  162 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=1.2e-30  Score=226.31  Aligned_cols=158  Identities=19%  Similarity=0.355  Sum_probs=142.5

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVE  261 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~  261 (358)
                      |.||++||+.++|+++|+++++|+++|||+||+ +++|+||++++..          .+..+++.++.++++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            679999999999999999999999999999998 9999999998752          25566778899999999999887


Q ss_pred             cccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          262 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       262 ~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                      .   ++++.|++|.++.+++++++.+.+   .+++++ +++++| .+++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        80 ~---k~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~l-~Ls~~E~~~l~  152 (171)
T d1ez4a2          80 L---KGATFYGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQ  152 (171)
T ss_dssp             H---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             h---hhhHhHHHHHHHHHHHHHHhccCC---ceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            4   579999999999999999999865   477775 678988 77999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhhhhh
Q 018265          340 KAKKELAGSIQKGVSFVR  357 (358)
Q Consensus       340 ~s~~~l~~~~~~~~~~~~  357 (358)
                      +|++.|+++++++++.++
T Consensus       153 ~s~~~l~~~i~~~l~~l~  170 (171)
T d1ez4a2         153 DSAATLKKVLNDGLAELE  170 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999998875

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=4.7e-30  Score=223.18  Aligned_cols=144  Identities=22%  Similarity=0.304  Sum_probs=124.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      +++.||+|+||+|+||+++++.|++++++     .+|+|+|++.    ++|.++|++|+.. +.++....+++.+++++|
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~-~~~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDPYEVFED  100 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc-ccccCccccccchhhccC
Confidence            45679999999899999999999987654     3899999877    5788999999875 333333334566899999


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      ||+||+++|.||++||+|.|++..|.+++++++++|.+||| +++|+++|||+|++|+++   .++++++|++||+|+
T Consensus       101 aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         101 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999996 899999999999999875   244699999999986

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.96  E-value=2.6e-30  Score=224.09  Aligned_cols=152  Identities=16%  Similarity=0.327  Sum_probs=135.2

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-------------CCChhHHHHHHHHHhcCcce
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-------------SLTPTEIDYLTDRIQNGGTE  258 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-------------~~~~~~~~~l~~~v~~~~~~  258 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ ++||+||++++..             .++...++++.++++.+|++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            679999999999999999999999999999999 9999999988732             13445678999999999999


Q ss_pred             eeecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHH
Q 018265          259 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERA  336 (358)
Q Consensus       259 ii~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~  336 (358)
                      |++   +||++.|++|.++++++++|+.+..   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|++
T Consensus        80 i~~---~kg~t~~~~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~l-~L~~~E~~  152 (170)
T d1llda2          80 IIN---GKGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELA  152 (170)
T ss_dssp             HHT---SCCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHH
T ss_pred             HHh---hhccchhhhHHHHHHHHHHHHcCCC---ceeeeeccccCccCCCCeeEeeccEEcCCeeEEEecC-CCCHHHHH
Confidence            988   4578999999999999999999865   467776 568888 77999999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018265          337 GLEKAKKELAGSIQK  351 (358)
Q Consensus       337 ~l~~s~~~l~~~~~~  351 (358)
                      +|++|++.||+.+++
T Consensus       153 ~l~~sa~~lk~~~~~  167 (170)
T d1llda2         153 ALKRSAETLKETAAQ  167 (170)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987753

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=3e-30  Score=225.64  Aligned_cols=161  Identities=20%  Similarity=0.264  Sum_probs=138.2

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceE-EEEecCCCcccccccccCCCC-C----------CChhHHHHHHHHHhcCccee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSC-S----------LTPTEIDYLTDRIQNGGTEV  259 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i  259 (358)
                      |.||++||++++|+++||++++|+++ |||+||+ ++||+||++++++ +          ++....+++.+.+++++++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            67999999999999999999999775 5599999 9999999999853 1          12223568888999999999


Q ss_pred             eecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeC-CC--CCccEEEEEEEEcCCceEEEccCCCCCHHHH
Q 018265          260 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVAS-TV--TELPFFASKVRLGRAGIEEIYSLGPLNEYER  335 (358)
Q Consensus       260 i~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~  335 (358)
                      ++.+  ++++.||+|.++++++++|+++.++.. ++++. +.+| +|  ++++|||+||++|++|++++.++ +|+++|+
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~~~~~-~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l-~L~~~E~  155 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGTPEGE-FVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSR  155 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCC-CCCHHHH
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhcccCC-ceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCC-CCCHHHH
Confidence            8875  367889999999999999999987543 55554 5566 56  68999999999999999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh
Q 018265          336 AGLEKAKKELAGSIQKGVSFVR  357 (358)
Q Consensus       336 ~~l~~s~~~l~~~~~~~~~~~~  357 (358)
                      ++|++|++.|+++++.+.++++
T Consensus       156 ~~l~~Sa~~L~~~~~~~~~~l~  177 (179)
T d5mdha2         156 EKMDLTAKELAEEKETAFEFLS  177 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999875

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=4.1e-30  Score=219.41  Aligned_cols=143  Identities=25%  Similarity=0.389  Sum_probs=119.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      ++||||+||||+|+||+++++.|+.++++     .+|+|+|+++    +++..+|+.++.. +....+..+.+.+++++|
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccc-ccccccccCcccccccCC
Confidence            46889999998899999999999876653     4899999987    3455667777754 232222233556799999


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCC-eEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-a~viv~tNP~d~~t~~~~~~~~~~~-~~p~~kviG~  191 (358)
                      ||+||+++|.|+++|++|.+++..|+++++++++.|.++||+ +++|++|||+|++|+++    ++++ |+|++||+|+
T Consensus        80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~----~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCL  154 (154)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHH----HHHcCCCCHHHEeCC
Confidence            999999999999999999999999999999999999999985 56888999999998765    6766 9999999986

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.96  E-value=6.6e-30  Score=224.71  Aligned_cols=161  Identities=19%  Similarity=0.165  Sum_probs=136.4

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCCCcccccccccCCCC-----CCChhH--HHHHHHHHhcCcceeeecc
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----SLTPTE--IDYLTDRIQNGGTEVVEAK  263 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~--~~~l~~~v~~~~~~ii~~~  263 (358)
                      |.||++||+.+||+++||++++|+ .+|||+||+ ++||+||++++..     ...++.  ++++.+.++++++++++.+
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            679999999999999999999996 568899999 9999999999853     133344  3789999999999999976


Q ss_pred             cCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCC-C--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVAST-V--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       264 ~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~-~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                        ++++++|+|.|+++++++|+++++.. .+++++ +++|+ |  ++|+|||+||++|++|+++++...+|+++|+++|+
T Consensus        80 --g~s~~~s~A~A~~~~~~ai~~~~~~~-~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~  156 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIKSLVTPTPEG-DWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIK  156 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHSCCCTT-CCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHHHHHHHHcCCCCC-ceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHH
Confidence              34667789999999999999998643 366775 56885 7  57999999999999999999864599999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 018265          340 KAKKELAGSIQKGVSFV  356 (358)
Q Consensus       340 ~s~~~l~~~~~~~~~~~  356 (358)
                      +|+++|+++.+.+..++
T Consensus       157 ~S~~eL~~e~~~v~~Ll  173 (188)
T d7mdha2         157 KSEAELLAEKKCVAHLT  173 (188)
T ss_dssp             HHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999887665443

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.7e-29  Score=215.58  Aligned_cols=143  Identities=25%  Similarity=0.443  Sum_probs=119.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~e-----l~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      +++|||+||||+|+||+++++.|++++++++     +.|+|.+.    ..+.++|+.++.. +..+.+..+.+.+++++|
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCchhhhccc
Confidence            3578999999889999999999999887643     56666654    4677888888864 333333234455799999


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      ||+||+++|.++++|++|.+++..|+++++++++.|.+||| +++++++|||+|++|+++   +++++|||++|||+
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            99999999999999999999999999999999999999995 799999999999999875   24569999999985

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.96  E-value=1.1e-29  Score=220.85  Aligned_cols=158  Identities=28%  Similarity=0.456  Sum_probs=134.2

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVE  261 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~  261 (358)
                      |+||++||++++|+++|+++++|+++||||||+ +++|+||++++.+          .....++.+...+.+.++..++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            789999999999999999999999999999998 9999999998753          12334455666666777777766


Q ss_pred             cccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          262 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       262 ~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                      .+ ++|++.|++|.++++++++|+.+.+   .+++++ +.+|+| .+++|||+||+||++|++.++++ +|+++|+++|+
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~~~---~~~~~s~~~~~~yGi~~v~~s~Pv~ig~~Gi~~v~~l-~l~~~E~~~l~  155 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQ  155 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHHhhcccCC---ceEEeeeccccccCCCCceeeeeeEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            55 6799999999999999999999864   478887 468888 55899999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 018265          340 KAKKELAGSIQKGVSFV  356 (358)
Q Consensus       340 ~s~~~l~~~~~~~~~~~  356 (358)
                      +|++.|+++.+ .++.+
T Consensus       156 ~s~~~l~~~~~-~v~~l  171 (174)
T d1pzga2         156 KSVDDVMALNK-AVAAL  171 (174)
T ss_dssp             HHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHH-HHHhc
Confidence            99999998664 44443

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.96  E-value=3.9e-30  Score=222.80  Aligned_cols=153  Identities=17%  Similarity=0.307  Sum_probs=134.4

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----C--------CChhHHHHHHHHHhcCccee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S--------LTPTEIDYLTDRIQNGGTEV  259 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~--------~~~~~~~~l~~~v~~~~~~i  259 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++++    .        ++.++++++.+++++.++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            679999999999999999999999999999999 9999999998742    1        23344678888999998888


Q ss_pred             eecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHH
Q 018265          260 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAG  337 (358)
Q Consensus       260 i~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~  337 (358)
                      ++.   ++++.|++|.++++++++++.|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++
T Consensus        80 ~~~---~~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~  152 (169)
T d1y6ja2          80 IKN---KGATYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEA  152 (169)
T ss_dssp             HHH---TSCCCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHH
T ss_pred             hhh---hhhhhhHHHHHHHHHHHHhccCCC---CceeeeeeeccccCCcccceeeeeEEcCCcEEEEecC-CCCHHHHHH
Confidence            774   579999999999999999999865   488886 679998 56999999999999999999996 999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 018265          338 LEKAKKELAGSIQKG  352 (358)
Q Consensus       338 l~~s~~~l~~~~~~~  352 (358)
                      |++|++.|++++++.
T Consensus       153 l~~s~~~lk~~~~~v  167 (169)
T d1y6ja2         153 LRFSAEQVKKVLNEV  167 (169)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999864

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=2e-29  Score=217.47  Aligned_cols=151  Identities=25%  Similarity=0.393  Sum_probs=134.8

Q ss_pred             eccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----------CCChhHHHHHHHHHhcCcceeeec
Q 018265          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEA  262 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~  262 (358)
                      .||++||++++|+++|+++++|+++|||+||+ +++|+||++++..          ...+++++++.+.++++++++++.
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence            58999999999999999999999999999998 9999999987642          245566788999999999998874


Q ss_pred             ccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHH
Q 018265          263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK  340 (358)
Q Consensus       263 ~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~  340 (358)
                         ++++.|++|.++++++++++.+.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++
T Consensus        81 ---~~~~~~a~a~a~~~~~~~i~~~~~---~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~l-~L~~~E~~~L~~  153 (165)
T d1t2da2          81 ---HASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  153 (165)
T ss_dssp             ---TSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             ---ccceeechhHHHHHHHHHHhhccc---cceeeeeccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHHHH
Confidence               578999999999999999999875   477775 789998 67999999999999999999996 999999999999


Q ss_pred             HHHHHHHHHHH
Q 018265          341 AKKELAGSIQK  351 (358)
Q Consensus       341 s~~~l~~~~~~  351 (358)
                      |+++|++..+.
T Consensus       154 s~~~lk~~~~~  164 (165)
T d1t2da2         154 AIAETKRMKAL  164 (165)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999988764

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.3e-29  Score=218.31  Aligned_cols=155  Identities=25%  Similarity=0.400  Sum_probs=137.2

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-----------CCChhHHHHHHHHHhcCcceee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVV  260 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~ii  260 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++..           .++.+.++++.+.++.++++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            679999999999999999999999999999998 9999999998742           2455667889999999999998


Q ss_pred             ecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHH
Q 018265          261 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL  338 (358)
Q Consensus       261 ~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l  338 (358)
                      +.   ++++.|++|.++++++.+++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        81 ~~---~~~~~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~~s~P~~lg~~Gv~~v~~l-~Ls~~E~~~l  153 (172)
T d1a5za2          81 ER---KGATHYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAF  153 (172)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             ec---cccchhhHHHHHHHHHHHHHhhcc---cceeeecccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHH
Confidence            74   478999999999999999999864   466765 568887 67999999999999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 018265          339 EKAKKELAGSIQKGVS  354 (358)
Q Consensus       339 ~~s~~~l~~~~~~~~~  354 (358)
                      ++|++.||+.+++..+
T Consensus       154 ~~sa~~lk~~i~~l~~  169 (172)
T d1a5za2         154 RKSASILKNAINEITA  169 (172)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987544

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=4.2e-29  Score=215.87  Aligned_cols=155  Identities=22%  Similarity=0.361  Sum_probs=129.6

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCC----C---ChhHHHHHHHHHhcCcceeeeccc
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----L---TPTEIDYLTDRIQNGGTEVVEAKT  264 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~----~---~~~~~~~l~~~v~~~~~~ii~~~~  264 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++.+.    +   ....++++.+.++++++.++..  
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRL--   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHh--
Confidence            789999999999999999999999999999999 99999999987531    1   1123577888889888888874  


Q ss_pred             CCCcccccHHHHHHHHHHHHHccCCCCCcEEEe-eEEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 018265          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIEC-AYVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA  341 (358)
Q Consensus       265 gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~-s~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s  341 (358)
                       ++++.|++|.+++.++++++++.+   .++++ +++.++|  ++++|||+||++|++|+++++++ +|+++|+++|++|
T Consensus        80 -k~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~l~~S  154 (168)
T d1hyea2          80 -KGGSEFGPAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKS  154 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             -ccCccccchhhhhHHHHhhhccCC---CeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecC-CCCHHHHHHHHHH
Confidence             467889999999999999999864   35555 4677775  78999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 018265          342 KKELAGSIQKGVS  354 (358)
Q Consensus       342 ~~~l~~~~~~~~~  354 (358)
                      ++.|++.+++..+
T Consensus       155 a~~lk~~~~~~k~  167 (168)
T d1hyea2         155 AEIIKKYCEEVKN  167 (168)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987754

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.96  E-value=5.8e-29  Score=213.97  Aligned_cols=155  Identities=20%  Similarity=0.283  Sum_probs=133.4

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C----C--ChhHHHHHHHHHhcCcceeeeccc
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKT  264 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~--~~~~~~~l~~~v~~~~~~ii~~~~  264 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ ++||+||++++++ +    +  .+..++++.++++++++++++.  
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~--   78 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG--   78 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHH--
Confidence            579999999999999999999999999999998 9999999998753 1    1  2234679999999999999885  


Q ss_pred             CCCcccccHHHHHHHHHHHHHccCCCCCcEEEeeEEeCCCCCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHH
Q 018265          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE  344 (358)
Q Consensus       265 gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  344 (358)
                       ||++.|++|.++..++.++..+.+   .+++++...+  ++++|||+||++|++|+++++++ +|+++|+++|++|++.
T Consensus        79 -kg~~~~~~a~~~~~~~~~~~~~~~---~~~~~s~~~~--~~~~~~s~Pv~ig~~Gv~~v~~l-~Ls~~E~~~l~~s~~~  151 (163)
T d1hyha2          79 -KGYTSYGVATSAIRIAKAVMADAH---AELVVSNRRD--DMGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDY  151 (163)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECT--TTCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHH
T ss_pred             -HHhHHHhHHHHhhHHHHHhcCCcc---ceeeeceecC--CcceEEEeEEEEcCCeEEEEecC-CCCHHHHHHHHHHHHH
Confidence             478999999999999999999864   3556553322  45799999999999999999996 9999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 018265          345 LAGSIQKGVSFV  356 (358)
Q Consensus       345 l~~~~~~~~~~~  356 (358)
                      |+++++++++.+
T Consensus       152 l~~~~~~~~~~l  163 (163)
T d1hyha2         152 IQQRFDEIVDTL  163 (163)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhC
Confidence            999999988753

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=7.8e-29  Score=212.24  Aligned_cols=155  Identities=24%  Similarity=0.366  Sum_probs=136.4

Q ss_pred             EEeeeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC---CCChhHHHHHHHHHhcCcceeeecccC
Q 018265          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC---SLTPTEIDYLTDRIQNGGTEVVEAKTG  265 (358)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~---~~~~~~~~~l~~~v~~~~~~ii~~~~g  265 (358)
                      || |+||++||++++|+++|+++++|+++|||+||+ +++|+||++.+..   .+..++++++.++++..+.++++   +
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~   75 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---R   75 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHH---h
Confidence            35 899999999999999999999999999999998 9999999998743   35566778888889998888876   4


Q ss_pred             CCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHH
Q 018265          266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK  343 (358)
Q Consensus       266 kg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~  343 (358)
                      ++++.+++|.++++++.+++.+..   .+++++ +++++| +++++||+||++|++|+++++++ +|+++|+++|++|++
T Consensus        76 ~~~s~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~S~Pv~ig~~Gv~~v~~l-~l~~~E~~~L~~s~~  151 (161)
T d1o6za2          76 KGATEWGPARGVAHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAE  151 (161)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhhHhhhHhhhhccc---cceeecccccccccccCceeeeeeEEcCCCEEEEeCC-CCCHHHHHHHHHHHH
Confidence            578999999999999999998865   356665 678887 77999999999999999999995 999999999999999


Q ss_pred             HHHHHHHHh
Q 018265          344 ELAGSIQKG  352 (358)
Q Consensus       344 ~l~~~~~~~  352 (358)
                      .|++++++.
T Consensus       152 ~L~~~~~~i  160 (161)
T d1o6za2         152 KLSDQYDKI  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998763

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=1e-28  Score=213.12  Aligned_cols=154  Identities=19%  Similarity=0.385  Sum_probs=133.4

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC----CC-------ChhHHHHHHHHHhcCcceee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----SL-------TPTEIDYLTDRIQNGGTEVV  260 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~~-------~~~~~~~l~~~v~~~~~~ii  260 (358)
                      |.||++||+.++|+++|+++++|+++|||+||+ +++|+||++++++    .+       .....+++.+.++..+++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            679999999999999999999999999999998 9999999998742    11       12234677888888888877


Q ss_pred             ecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHH
Q 018265          261 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL  338 (358)
Q Consensus       261 ~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l  338 (358)
                      ..   ++++.|+++.++.+++.+++.+.+   .+++++ +++++| ++++|||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~~---~~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~yg~~~v~~s~Pv~lg~~Gv~~v~~l-~Ls~~E~~~L  152 (168)
T d1ldna2          80 EK---KGATYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRF  152 (168)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             Hh---hccccchHHHHHhhHHHhhhcccc---eeeeeeeeeccccCCCCeeecceEEEcCCeEEEEeCC-CCCHHHHHHH
Confidence            64   478999999999999999998854   477775 568888 77999999999999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 018265          339 EKAKKELAGSIQKGV  353 (358)
Q Consensus       339 ~~s~~~l~~~~~~~~  353 (358)
                      ++|++.|++.+++|+
T Consensus       153 ~~s~~~lk~~i~~a~  167 (168)
T d1ldna2         153 HHSAATLKSVLARAF  167 (168)
T ss_dssp             HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999875

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.95  E-value=7e-29  Score=215.16  Aligned_cols=151  Identities=19%  Similarity=0.260  Sum_probs=132.8

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC------------CCChhHHHHHHHHHhcCccee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEV  259 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i  259 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||+++++.            ....+.++++.+.++.++.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            689999999999999999999999999999998 9999999998742            122344678888999999888


Q ss_pred             eecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHH
Q 018265          260 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERA  336 (358)
Q Consensus       260 i~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~  336 (358)
                      ++.   ++++.|++|.++++++++++.+.+   .++|++ +++|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~~---~~~s~~a~a~~~~~~~~~~~~~~~---~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~  154 (172)
T d1i0za2          82 IKL---KGYTNWAIGLSVADLIESMLKNLS---RIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVA  154 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHH
T ss_pred             eec---ccccchHHHHHHHHHHHHHhcCCC---cccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCC-CCCHHHHH
Confidence            874   478999999999999999999854   588887 568998  56999999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018265          337 GLEKAKKELAGSIQ  350 (358)
Q Consensus       337 ~l~~s~~~l~~~~~  350 (358)
                      +|++|++.|++..+
T Consensus       155 ~l~~Sa~~l~~~~~  168 (172)
T d1i0za2         155 QLKKSADTLWDIQK  168 (172)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987654

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.95  E-value=7.2e-30  Score=221.60  Aligned_cols=157  Identities=20%  Similarity=0.362  Sum_probs=136.7

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCC-----------CChhHHHHHHHHHhcCcceee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----------LTPTEIDYLTDRIQNGGTEVV  260 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~-----------~~~~~~~~l~~~v~~~~~~ii  260 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++.+.           +..+.++++.++++.++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            679999999999999999999999999999998 99999999887421           122234667778888999988


Q ss_pred             ecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC-CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHH
Q 018265          261 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL  338 (358)
Q Consensus       261 ~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l  338 (358)
                      +   ++|++.|++|.++++++.+++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~---~kg~~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~l-~L~~~E~~~l  152 (172)
T d1llca2          80 K---LKGATFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESM  152 (172)
T ss_dssp             S---SSSCTTHHHHHHHHHHHHHHHHTCC---CCEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECCC-CCTTHHHHHH
T ss_pred             H---hhhhhhhhhHHHHHHHHHHHhcCCC---CccceeeeecCccCcccceEEEEEEEcCCceEEEecC-CCCHHHHHHH
Confidence            7   4689999999999999999999875   377775 679999 66899999999999999999995 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 018265          339 EKAKKELAGSIQKGVSFV  356 (358)
Q Consensus       339 ~~s~~~l~~~~~~~~~~~  356 (358)
                      ++|+++|++.++++++-+
T Consensus       153 ~~s~~~lk~~i~~~~~~~  170 (172)
T d1llca2         153 QKSASQLKKVLTDAFAKN  170 (172)
T ss_dssp             HTTTTTTTTTTTTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999998887654

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.95  E-value=1.8e-28  Score=211.90  Aligned_cols=155  Identities=21%  Similarity=0.296  Sum_probs=129.2

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCCC---------CChhHHHHHHHHHhcCcceeeec
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---------LTPTEIDYLTDRIQNGGTEVVEA  262 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~---------~~~~~~~~l~~~v~~~~~~ii~~  262 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++...         .....+.++..+++.++.++.. 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIK-   80 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEec-
Confidence            689999999999999999999999999999998 89999999987421         1222334555566666666655 


Q ss_pred             ccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHH
Q 018265          263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE  339 (358)
Q Consensus       263 ~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~  339 (358)
                        +++++.|++|.++++++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        81 --~~~s~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~~l~  154 (169)
T d1ldma2          81 --LKGYTSWAIGLSVADLAETIMKNLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQ  154 (169)
T ss_dssp             --HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHhhhhheecCCCC---ceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecC-CCCHHHHHHHH
Confidence              3578999999999999999999865   478876 568988  57999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 018265          340 KAKKELAGSIQKGVSF  355 (358)
Q Consensus       340 ~s~~~l~~~~~~~~~~  355 (358)
                      +|++.|+ ++.+.++|
T Consensus       155 ~s~~~l~-~~~k~lkf  169 (169)
T d1ldma2         155 KSATTLW-DIQKDLKF  169 (169)
T ss_dssp             HHHHHHH-HHHHTCCC
T ss_pred             HHHHHHH-HHHHhcCC
Confidence            9999997 55566654

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.3e-27  Score=205.29  Aligned_cols=153  Identities=23%  Similarity=0.355  Sum_probs=129.2

Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEecCCCcccccccccCCCC-C-----------CChhHHHHHHHHHhcCccee
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S-----------LTPTEIDYLTDRIQNGGTEV  259 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i  259 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||+++++. +           ...+..+.+...++..+..+
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            679999999999999999999999999999999 8999999998742 1           11223456777777777777


Q ss_pred             eecccCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHH
Q 018265          260 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERA  336 (358)
Q Consensus       260 i~~~~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~  336 (358)
                      +..   ++++.+++|.++..++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~~---k~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l-~L~~~E~~  154 (172)
T d2ldxa2          82 LDM---KGYTSWAIGLSVTDLARSILKNLK---RVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKV-NMTAEEEG  154 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECC-CCCHHHHH
T ss_pred             hhc---ccchhHHHHHHHhHHHHhhcCCCc---cceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecC-CCCHHHHH
Confidence            664   478999999999999999998754   477776 568888  57999999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 018265          337 GLEKAKKELAGSIQKGV  353 (358)
Q Consensus       337 ~l~~s~~~l~~~~~~~~  353 (358)
                      +|++|++.|++. .+.+
T Consensus       155 ~l~~s~~~lk~~-~k~l  170 (172)
T d2ldxa2         155 LLKKSADTLWNM-QKNL  170 (172)
T ss_dssp             HHHHHHHHHHHH-TSCS
T ss_pred             HHHHHHHHHHHH-HHhc
Confidence            999999999854 3444

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=9.7e-27  Score=201.84  Aligned_cols=157  Identities=20%  Similarity=0.223  Sum_probs=125.8

Q ss_pred             eeeccHHHHHHHHHHHhCCCCCCCceE-EEEecCCCcccccccccCCCC----CC-ChhH-HHHHHHHHhcCcceeeecc
Q 018265          191 VTMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSC----SL-TPTE-IDYLTDRIQNGGTEVVEAK  263 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v~~----~~-~~~~-~~~l~~~v~~~~~~ii~~~  263 (358)
                      +|.||++||++++|+++|+++++|+++ |||+||+ +++|+||++++..    .+ .+.. ..+..++...+++.++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            478999999999999999999999875 6799999 9999999999853    12 2222 2344444455555555543


Q ss_pred             cCCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHH
Q 018265          264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK  340 (358)
Q Consensus       264 ~gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~  340 (358)
                        ++++.|++|.++++++++++.+.++. .++|++ +++|+|  ++++++|+||+++++|++.+.++ +|+++|+++|++
T Consensus        80 --~~~s~~~~a~a~~~~~~~~~~~~~~~-~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l-~L~~~E~~~l~~  155 (173)
T d1y7ta2          80 --GASSAASAANAAIEHIRDWALGTPEG-DWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEI  155 (173)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHTBCCTT-CCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCC-CCCHHHHHHHHH
T ss_pred             --ccCchhhHHHHHHHHHHHHhcccCCC-CceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCC-CCCHHHHHHHHH
Confidence              46888999999999999999987643 588887 569998  68999999999887666666665 999999999999


Q ss_pred             HHHHHHHHHHHh
Q 018265          341 AKKELAGSIQKG  352 (358)
Q Consensus       341 s~~~l~~~~~~~  352 (358)
                      |+++|+++++..
T Consensus       156 s~~~L~~~~e~v  167 (173)
T d1y7ta2         156 TAQELLDEMEQV  167 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998744

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=1.4e-26  Score=200.31  Aligned_cols=139  Identities=17%  Similarity=0.186  Sum_probs=109.2

Q ss_pred             CCEEEEEcCCCchHHHH--HHHHHhCCC--CcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCcHHhhhCCC
Q 018265           46 GFKVAVLGAAGGIGQPL--AMLMKINPL--VSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~--a~~l~~~~~--~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~a  115 (358)
                      +|||+|||| |++|...  +..++....  ..||+|+|+++  .++.++|+.+..    .....+.. .++|++++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~-~~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIH-LTLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEE-EESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceee-ecCCchhhcCCC
Confidence            479999998 9887544  444444432  46999999987  567888876532    12333333 356888999999


Q ss_pred             CEEEEcCCCCCCCCCCHHhH--------------------HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHH
Q 018265          116 DIVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~  175 (358)
                      |+||+++|.++++|++|.++                    +.+|++++++++++|+++|||+|+|++|||+|++|+++  
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~--  156 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV--  156 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH--
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH--
Confidence            99999999888776665554                    57999999999999999999999999999999998764  


Q ss_pred             HHHHhCCCCCCcEEEee
Q 018265          176 VFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       176 ~~~~~~~~p~~kviG~t  192 (358)
                        ++.  +|++||||+|
T Consensus       157 --~k~--~p~~kviGlC  169 (169)
T d1s6ya1         157 --LRY--TKQEKVVGLC  169 (169)
T ss_dssp             --HHH--CCCCCEEECC
T ss_pred             --HHH--CCCCCEEeeC
Confidence              565  5889999997

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.93  E-value=7.6e-26  Score=195.70  Aligned_cols=158  Identities=16%  Similarity=0.155  Sum_probs=119.8

Q ss_pred             eccHHHHHHHHHHHhCCCCCCCce-EEEEecCCCcccccccccCCCCC-----CChhH--HHHHHHHHhcCcceeeeccc
Q 018265          193 MLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSCS-----LTPTE--IDYLTDRIQNGGTEVVEAKT  264 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~~-----~~~~~--~~~l~~~v~~~~~~ii~~~~  264 (358)
                      .||++||++++|+++|+++++|+. +|||+||+ +++|+||.+++...     ..+..  .+++.+.++.++..+...+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            489999999999999999999975 77899999 99999999998531     11111  2455555666666666654 


Q ss_pred             CCCcccccHHHHHHHHHHHHHccCCCCCcEEEee-EEeCCC--CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 018265          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA  341 (358)
Q Consensus       265 gkg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s  341 (358)
                      +++++.++.+.++..+..++..+.+   .+++++ +++|+|  ++++|||+||++|++|++.+.++ +|+++|+++|++|
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i~~~~~---~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l-~L~~~e~~~l~~s  155 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWVLGTAG---KWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVT  155 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHCCTT---CCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHhCCCc---cceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence            3444444444444444555544432   377886 568988  68999999999999999999986 9999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 018265          342 KKELAGSIQKGVSFV  356 (358)
Q Consensus       342 ~~~l~~~~~~~~~~~  356 (358)
                      +++|+++++...+.+
T Consensus       156 ~~~L~~e~~~v~~ll  170 (171)
T d1b8pa2         156 LNELLEEQNGVQHLL  170 (171)
T ss_dssp             HHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999988776554

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=9e-26  Score=194.41  Aligned_cols=139  Identities=18%  Similarity=0.226  Sum_probs=107.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHH--HHHhC-CC-CcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCcHHhhhCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGM  115 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~--~l~~~-~~-~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~a  115 (358)
                      +|..||+|||| |++|...+.  .+... .+ .+||+|+|+++  +++.+.++.+..  .....+.. .++|+++|++||
T Consensus         1 ~k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~eal~~A   78 (167)
T d1u8xx1           1 KKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFA-ATTDPEEAFTDV   78 (167)
T ss_dssp             CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEE-EESCHHHHHSSC
T ss_pred             CCCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceE-ecCChhhccCCC
Confidence            36789999999 999877543  33222 22 47999999998  555566665542  12222322 246889999999


Q ss_pred             CEEEEcCCCCCCCCCCHHhHH--------------------HHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHH
Q 018265          116 DIVIIPAGVPRKPGMTRDDLF--------------------NINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~--------------------~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~  175 (358)
                      |+||+++|.++++|++|.+++                    .+|+++++++++.|+++|||||+|++|||+|++|+++  
T Consensus        79 D~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~--  156 (167)
T d1u8xx1          79 DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT--  156 (167)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH--
T ss_pred             CEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH--
Confidence            999999999999888888775                    4679999999999999999999999999999998765  


Q ss_pred             HHHHhCCCCCCcEEE
Q 018265          176 VFKKVGTYDPKRLLG  190 (358)
Q Consensus       176 ~~~~~~~~p~~kviG  190 (358)
                        +++  +|+.|||.
T Consensus       157 --~k~--~P~~rVI~  167 (167)
T d1u8xx1         157 --RRL--RPNSKILN  167 (167)
T ss_dssp             --HHH--STTCCEEE
T ss_pred             --HHH--CCcccccC
Confidence              565  69999973

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=4.8e-26  Score=195.51  Aligned_cols=137  Identities=15%  Similarity=0.220  Sum_probs=103.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh--C--CCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKI--N--PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~--~--~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      |||+|||| |++|...+.....  .  ...+||+|+|+++ ..+.+.|+.+........... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999998 9999888764432  2  2357999999988 334566766543222222322 45678999999999999


Q ss_pred             CCCCCCCCCCHHhH--------------------HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          122 AGVPRKPGMTRDDL--------------------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       122 ag~~~~~g~~r~~~--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      +|.+++++++|.++                    ..++++++.++.+ +.++||++|+|++|||+|++|+++    ++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~----~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFV----RNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHH----HHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHH----HHh-
Confidence            99988777766554                    4566777777765 778899999999999999998754    665 


Q ss_pred             CCCCCcEEEee
Q 018265          182 TYDPKRLLGVT  192 (358)
Q Consensus       182 ~~p~~kviG~t  192 (358)
                       +|++||+|+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5788999997

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.5e-24  Score=186.22  Aligned_cols=137  Identities=20%  Similarity=0.195  Sum_probs=105.3

Q ss_pred             CCCEEEEEcCCCchHHHHHH--HHHh-CCC-CcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCcHHhhhCCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAM--LMKI-NPL-VSVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMD  116 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~--~l~~-~~~-~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aD  116 (358)
                      ++|||+|||| |++|++++.  .++. ..+ ..||+|+|+++  +++.+.|+.+..  .....+.. .++|+++|++|||
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~-~~td~~eaL~dad   78 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFE-KTMNLDDVIIDAD   78 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEE-EESCHHHHHTTCS
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEE-EeCChhhcccCCC
Confidence            4789999998 999988654  2333 333 36999999997  667778877742  12233332 3578999999999


Q ss_pred             EEEEcCCC------------------CCCCCCCHHhH--------HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccH
Q 018265          117 IVIIPAGV------------------PRKPGMTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (358)
Q Consensus       117 iVIi~ag~------------------~~~~g~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t  170 (358)
                      +||++++.                  +++++++|.+.        +.+|+++++++++.|+++||++|+|++|||+|++|
T Consensus        79 ~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t  158 (171)
T d1obba1          79 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT  158 (171)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHH
T ss_pred             eEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHH
Confidence            99997654                  44556666554        57899999999999999999999999999999998


Q ss_pred             HHHHHHHHHhCCCCCCcEEE
Q 018265          171 PIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       171 ~~~~~~~~~~~~~p~~kviG  190 (358)
                      +++    ++++++   |+||
T Consensus       159 ~~~----~k~~~~---k~iG  171 (171)
T d1obba1         159 TLV----TRTVPI---KAVG  171 (171)
T ss_dssp             HHH----HHHSCS---EEEE
T ss_pred             HHH----HHhcCC---CccC
Confidence            654    677664   8887

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.6e-08  Score=87.33  Aligned_cols=119  Identities=15%  Similarity=0.216  Sum_probs=82.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--H-H---HHhcCCC--------------CCeEEEEe
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T-A---DISHMDT--------------NAVVRGFL  103 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~-~---dl~~~~~--------------~~~v~~~~  103 (358)
                      .||+|||| |.+|+.+|..++..|+  +++|+|+++ .  .+.  . .   .+.....              ..++..  
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~--   79 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT--   79 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE--
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc--
Confidence            49999998 9999999999999998  999999986 1  111  0 0   1111100              012333  


Q ss_pred             CCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       104 ~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                       ++|+.+++++||+||.+.              .+|+++.+++...+.+++| ++  |+.||...+...   +. .....
T Consensus        80 -~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~---~l-a~~~~  138 (192)
T d1f0ya2          80 -STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHT--IFASNTSSLQIT---SI-ANATT  138 (192)
T ss_dssp             -ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTC--EEEECCSSSCHH---HH-HTTSS
T ss_pred             -cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCc--eeeccCcccccc---hh-hhhcc
Confidence             468889999999999985              4578999999999999985 65  447887765542   21 23222


Q ss_pred             CCCCcEEEee
Q 018265          183 YDPKRLLGVT  192 (358)
Q Consensus       183 ~p~~kviG~t  192 (358)
                       .++|++|+.
T Consensus       139 -~p~r~ig~H  147 (192)
T d1f0ya2         139 -RQDRFAGLH  147 (192)
T ss_dssp             -CGGGEEEEE
T ss_pred             -CHhHEEeec
Confidence             356788874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.65  E-value=1.4e-08  Score=87.29  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=80.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hh--HHH----HHhc-CCC--------CCeEEEEeCCCcH
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTA----DISH-MDT--------NAVVRGFLGQQQL  108 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g--~~~----dl~~-~~~--------~~~v~~~~~t~d~  108 (358)
                      .||+|||| |.+|+.+|..++..|+  +++++|++. .  .+  ...    ++.. ...        ..++..   ++++
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~~   78 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TLSY   78 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ESSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---cccc
Confidence            48999998 9999999999999998  999999986 1  11  111    1111 110        012433   3454


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                       +++.+||+||.+.              .+|+++.+++.++|.+++| ++  |++||-......-+    ..... .++|
T Consensus        79 -~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~--IiaSnTS~l~i~~l----a~~~~-~p~r  136 (186)
T d1wdka3          79 -GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDA--ILASNTSTISISLL----AKALK-RPEN  136 (186)
T ss_dssp             -TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTC--EEEECCSSSCHHHH----GGGCS-CGGG
T ss_pred             -ccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCe--eEEeccccccHHHH----HHhcc-Cchh
Confidence             6799999999984              4568999999999999995 66  44788877664222    22222 3567


Q ss_pred             EEEee
Q 018265          188 LLGVT  192 (358)
Q Consensus       188 viG~t  192 (358)
                      ++|+-
T Consensus       137 ~~g~H  141 (186)
T d1wdka3         137 FVGMH  141 (186)
T ss_dssp             EEEEE
T ss_pred             eEeec
Confidence            87774

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.59  E-value=1.6e-07  Score=81.25  Aligned_cols=126  Identities=14%  Similarity=0.173  Sum_probs=79.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----------------CCCeEEEEeCCCcHHh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLED  110 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~t~d~~~  110 (358)
                      |||+|||+ |+||..+|..|+..|.  +|+.+|+++.  ....|....                ....+..   ++|+++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~--~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~   72 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSST--KIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHH--HHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHH
Confidence            89999998 9999999999999998  9999999851  111222110                1122333   468899


Q ss_pred             hhCCCCEEEEcCCCCCCC-CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCCCCccHHHHHHHHHHhCCC
Q 018265          111 ALTGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ++++||+++++.+.|... +......+   ..+..++.+.++...++..|++ -|-|....-.+....+.+.++.
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~  144 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGK  144 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSC
T ss_pred             HHhhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccc
Confidence            999999999999888543 32222222   2444455555555556665555 3566665544433333443333

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.50  E-value=1.2e-07  Score=88.41  Aligned_cols=174  Identities=15%  Similarity=0.041  Sum_probs=106.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEE--eCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF--LGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~--~~t~d~~~al~~aDiVIi~  121 (358)
                      +++|||.|+||+|+||++++..|++++.  +|+.+|.........++.    .......  ....++.+++++.|.||++
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~d~Vih~   86 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMF----CDEFHLVDLRVMENCLKVTEGVDHVFNL   86 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGT----CSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcc----cCcEEEeechhHHHHHHHhhcCCeEeec
Confidence            4689999999999999999999999998  999999765211111111    1122111  0112445667899999999


Q ss_pred             CCCCCCC---CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHH---HH---HHHHhCCCCCCcEEEee
Q 018265          122 AGVPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA---AE---VFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       122 ag~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~---~~---~~~~~~~~p~~kviG~t  192 (358)
                      ++.....   ...-......|+.....+.....+.+.. .+|..|.-...-..--   .+   .........|..++|.+
T Consensus        87 a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~s  165 (363)
T d2c5aa1          87 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLE  165 (363)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCcCCCCCHHHHH
Confidence            8654321   2234456678999999999999887643 4444432111100000   00   00011112345567777


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCc-eEEEEecCC
Q 018265          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~  224 (358)
                      .+...++...+.+..|++..-++ ..++|.++.
T Consensus       166 K~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~  198 (363)
T d2c5aa1         166 KLATEELCKHYNKDFGIECRIGRFHNIYGPFGT  198 (363)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence            77777777888888888776665 568887654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.2e-07  Score=85.20  Aligned_cols=168  Identities=13%  Similarity=0.081  Sum_probs=104.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      .||.|+||+|++|++++..|+..|.  +|+.+|.... +....+........+.... ....+.++.++|+||++|+...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~~   77 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFT-GRKRNVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPAS   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSS-CCGGGTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCc-CCHHHHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccCC
Confidence            4999999999999999999999887  8999986331 0001111111122233321 1234566789999999987543


Q ss_pred             CC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC------CCCc-cHHHHHHHHHHhCCCCCCcEEEeeeccHH
Q 018265          127 KP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVNS-TVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (358)
Q Consensus       127 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN------P~d~-~t~~~~~~~~~~~~~p~~kviG~t~lds~  197 (358)
                      ..  .....+.+..|+....++.+.+++...  .+|.+|.      |... ...   ........+.|...+|.+.+...
T Consensus        78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e---~~~~~~~~~~p~~~Y~~sK~~~E  152 (312)
T d2b69a1          78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSE---DYWGHVNPIGPRACYDEGKRVAE  152 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCT---TCCCBCCSSSTTHHHHHHHHHHH
T ss_pred             chhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCc---cccCCCCCCCCccHHHHHHHHHH
Confidence            11  123456678899999999999988753  4555432      1110 000   00000011234556788777777


Q ss_pred             HHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          198 RANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       198 R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      .+...+++..|++..-++ ..|+|.+.
T Consensus       153 ~~~~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         153 TMCYAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHhCCcEEEEEeeeEECCCC
Confidence            788888888898877775 56888654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.45  E-value=3e-07  Score=84.41  Aligned_cols=174  Identities=17%  Similarity=0.182  Sum_probs=108.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CcHHhhhCCCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~----~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiV  118 (358)
                      |||.|+||+|+||++++..|+..+.    ..++..+|.....+....+........+..+...    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999988763    4678888875422222222222122334333211    2344567999999


Q ss_pred             EEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCCCccHHHHHHHHHHhCCCCCCcEEEeeecc
Q 018265          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (358)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~~t~~~~~~~~~~~~~p~~kviG~t~ld  195 (358)
                      ++.|+.+...  .....+.+..|+.....+.+.+.++...- +|..| .-+..-..  ..-..+...+.|...+|.+.+.
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~-~I~~Ss~~~yg~~~--~~~~~E~~~~~p~~~Y~~sK~~  157 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR-VVHVSTNQVYGSID--SGSWTESSPLEPNSPYAASKAG  157 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEEEGGGGCCCS--SSCBCTTSCCCCCSHHHHHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCce-EEEeecceeecCCC--CCCCCCCCCCCCCCHHHHHHHH
Confidence            9998765322  12334567889999999999999887543 44433 21110000  0000111123345567777777


Q ss_pred             HHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          196 VVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       196 s~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      ...+...+++..|++...++ ..|+|.+.
T Consensus       158 ~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  186 (322)
T d1r6da_         158 SDLVARAYHRTYGLDVRITRCCNNYGPYQ  186 (322)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHhCCCEEEEEeeeEECcCC
Confidence            77778888889899888875 67889654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=3.8e-07  Score=84.34  Aligned_cols=167  Identities=19%  Similarity=0.160  Sum_probs=98.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCcHHhhhC--CCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDALT--GMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~--~aDiV  118 (358)
                      |||.||||+|++|++++..|+..+.  +|+++|+..  .......+.+... ..+..+.+    ...+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHT-SCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcC-CCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            8999999999999999999999987  999999643  2222121211110 11222111    123445566  78999


Q ss_pred             EEcCCCCCCC-C-CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC------CCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          119 IIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       119 Ii~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN------P~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      |++|+....+ . +...+.+..|+.....+.+.++++..+.+|...|.      +.....       .......+...+|
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~-------e~~~~~~p~~~Y~  150 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYV-------ESFPTGTPQSPYG  150 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBC-------TTSCCCCCSSHHH
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccc-------cccccCCCcchHH
Confidence            9998754211 0 23456788999999999999999876554443331      111110       0111223455667


Q ss_pred             eeeccHHHHHHHHHHH-hCCCCCCCc-eEEEEecC
Q 018265          191 VTMLDVVRANTFVAEV-LGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~-l~v~~~~v~-~~v~G~hg  223 (358)
                      .+.+...++....++. .+.+..-++ ..++|.+.
T Consensus       151 ~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~  185 (338)
T d1udca_         151 KSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHP  185 (338)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCT
T ss_pred             HHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccC
Confidence            7666665554444443 355444443 56788654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.44  E-value=5.6e-07  Score=74.86  Aligned_cols=90  Identities=20%  Similarity=0.195  Sum_probs=60.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      |||+|||+ |.+|+++|..|...++  +|..+|+++. ...+.+..  .  .. ..   .++ .+++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~--~--~~-~~---~~~-~~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQ--L--VD-EA---GQD-LSLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT--S--CS-EE---ESC-GGGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhh--c--cc-ee---eee-cccccccccccccC--c
Confidence            79999998 9999999999999998  9999998751 11122211  1  11 11   234 37899999999874  2


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  164 (358)
                                    ...+.++.+.+..+- |+.+|+..++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          234555666666654 6676665543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.41  E-value=3.8e-07  Score=76.62  Aligned_cols=101  Identities=16%  Similarity=0.137  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCC--C-CCeEE--EEeCCCcHHhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMD--T-NAVVR--GFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~--~-~~~v~--~~~~t~d~~~al~~aDiVI  119 (358)
                      ++||+|||| |.+|+.+|..|...|+  ++.++|+++.. ....+.....  . .....  ....++|.++++++||+||
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            359999999 9999999999999998  99999997521 1111111100  0 01111  1112357889999999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  165 (358)
                      ++...                ....+++++++.+- ++.+|+...|.
T Consensus        78 i~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          78 IVVPA----------------IHHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             ECSCG----------------GGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEEch----------------hHHHHHHHHhhhccCCCCEEEEeCCC
Confidence            98421                12355667777765 56666554443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=4.7e-07  Score=84.54  Aligned_cols=168  Identities=15%  Similarity=0.045  Sum_probs=103.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcC--CCCCeEEEEeC----CCcHHhhhCCC--C
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTNAVVRGFLG----QQQLEDALTGM--D  116 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~--~~~~~v~~~~~----t~d~~~al~~a--D  116 (358)
                      +|.|+||+|+||++++..|++.|.  +|+.+|+...   ......+.+.  .....+..+.+    ..++++++++.  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            555999999999999999999987  9999997531   0111111111  11234444321    12344556654  9


Q ss_pred             EEEEcCCCCCC--CCCCHHhHHHHHHHHHHHHHHHHHhhC--CCeEEEEec------CCCCccHHHHHHHHHHhCCCCCC
Q 018265          117 IVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLIS------NPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       117 iVIi~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~t------NP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      +|+++|+....  ...+....+..|+.....+.+.+++++  +...+|.+|      +|-+...       .+-..+.|.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~-------~E~~~~~P~  153 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQ-------KETTPFYPR  153 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSB-------CTTSCCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCc-------CCCCCCCCC
Confidence            99999886432  223445667889999999999999876  234566544      3322210       111223455


Q ss_pred             cEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCC
Q 018265          187 RLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~  224 (358)
                      ..+|.+.+...++...+++..+++..-++ ..++|...+
T Consensus       154 ~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~  192 (357)
T d1db3a_         154 SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRG  192 (357)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC
Confidence            67888888787888888888888776665 458886543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.37  E-value=7.7e-07  Score=75.46  Aligned_cols=97  Identities=22%  Similarity=0.244  Sum_probs=65.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----C---CCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----T---NAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----~---~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      |||+|||+ |..|+++|..|...+.  ++.|+.++........+....    .   ...... ..++|+++++++||+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEI-FWPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEE-ECGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhccccc-cccccHHHHHhccchhh
Confidence            89999998 9999999999998887  999997643222333343221    1   111222 24678899999999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++.  |              ...++++++++..+-++..+++.|
T Consensus        77 ~av--p--------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGV--S--------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECS--C--------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             ccc--c--------------hhhhHHHHHhhccccccceecccc
Confidence            974  2              234556677777776555555543

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.33  E-value=5.6e-07  Score=82.07  Aligned_cols=111  Identities=20%  Similarity=0.190  Sum_probs=74.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH---HHHHhcCCCCCeEEEEeCC----CcHHhhhCCC--CEE
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRGFLGQ----QQLEDALTGM--DIV  118 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~t----~d~~~al~~a--DiV  118 (358)
                      ||.|+||+|+||++++..|+.+|.  +|+.+|.....+.   ...+...   ..++.+.+.    .++.++++++  |+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~---~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhcc---CCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            899999999999999999999988  8999985432111   1122221   223332221    2455666654  999


Q ss_pred             EEcCCCCCCCC--CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          119 IIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       119 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      |++|+......  .+-.+....|+.....+.+...+....-.++..|
T Consensus        77 ih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          77 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            99987643221  1335667889999999999999887655555544

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.8e-06  Score=71.96  Aligned_cols=105  Identities=13%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVI  119 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVI  119 (358)
                      |.+.||+|+||+|++|++++..|+.+|.  +|.+++++..+     +.... ...++.+.+    ..++.++++++|+||
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~-----~~~~~-~~~~~~~~gD~~d~~~l~~al~~~d~vi   72 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhh-----ccccc-ccccccccccccchhhHHHHhcCCCEEE
Confidence            4567999999999999999999999997  99999886521     11110 111222212    146678899999999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  162 (358)
                      .+.|........     ..+....+.+++.+++..-+ .+|.+
T Consensus        73 ~~~g~~~~~~~~-----~~~~~~~~~l~~aa~~~~v~-r~i~~  109 (205)
T d1hdoa_          73 VLLGTRNDLSPT-----TVMSEGARNIVAAMKAHGVD-KVVAC  109 (205)
T ss_dssp             ECCCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCC-EEEEE
T ss_pred             EEeccCCchhhh-----hhhHHHHHHHHHHHHhcCCC-eEEEE
Confidence            998754221111     12345666778888877633 34443

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=7.7e-06  Score=73.03  Aligned_cols=72  Identities=10%  Similarity=0.052  Sum_probs=56.3

Q ss_pred             CCcccccHHHHHHHHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 018265          266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAY-VASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA  341 (358)
Q Consensus       266 kg~t~~s~A~ai~~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s  341 (358)
                      ++...||  ..++++|++|.+|++.   ++.+++ .+|.+   |++.++++||+|+++|+.++.. ++|++...+++..-
T Consensus       127 ~~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~  200 (253)
T d1up7a2         127 RGGSMYS--TAAAHLIRDLETDEGK---IHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIHAV  200 (253)
T ss_dssp             STTTTHH--HHHHHHHHHHHSSSCE---EEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHHHH
T ss_pred             ccCcchH--HHHHHHHHHHHcCCCc---EEEEeCCCcCcCCCCChhhheEEEEEecCCccccccc-CCCcHHHHHHHHHH
Confidence            3445454  7889999999999763   555554 46765   8899999999999999999876 69999998887664


Q ss_pred             HH
Q 018265          342 KK  343 (358)
Q Consensus       342 ~~  343 (358)
                      ..
T Consensus       201 ~~  202 (253)
T d1up7a2         201 KM  202 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=5.6e-07  Score=78.97  Aligned_cols=113  Identities=18%  Similarity=0.126  Sum_probs=74.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |+++||.|+||+|++|++++..|++.+...+|.++++++............  ..+..+....++.++++++|+|++++|
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~--~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVN--QEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCE--EEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceee--eeeeccccccccccccccccccccccc
Confidence            445699999999999999999999888777899999865110000001100  000001112467788999999999987


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEE
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  159 (358)
                      ... ......++...|.....++++...+...+-.+
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi  124 (232)
T d2bkaa1          90 TTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFN  124 (232)
T ss_dssp             CCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             ccc-cccchhhhhhhcccccceeeecccccCccccc
Confidence            542 12234556677888999999988876655433

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.28  E-value=3.4e-07  Score=85.82  Aligned_cols=182  Identities=16%  Similarity=0.094  Sum_probs=105.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhhC--CCCEEEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ---LEDALT--GMDIVII  120 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~--~aDiVIi  120 (358)
                      |||.|+||+|++|++++..|+..+.- .++++|.....+....+.+......+..+... +|   ++.+++  ++|+||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~-vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            79999999999999999999888762 47788865422222223333223344443221 23   233333  5899999


Q ss_pred             cCCCCCCCC--CCHHhHHHHHHHHHHHHHHHHHhhCC--------CeEEEEecC-CCCcc---HHHHHHH------HHHh
Q 018265          121 PAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCP--------KAIVNLISN-PVNST---VPIAAEV------FKKV  180 (358)
Q Consensus       121 ~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p--------~a~viv~tN-P~d~~---t~~~~~~------~~~~  180 (358)
                      +|+....+-  ..-.+.+..|+.....+.+.+.++..        ...++..|. -+.-.   ... .+-      ....
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~-~~~~~~~~~~~e~  158 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDE-VENSVTLPLFTET  158 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGG-SCTTSCCCCBCTT
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCc-cccccCCCCcccC
Confidence            987542110  12245678888888888888776532        124554432 11000   000 000      0000


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCCC-ccccc
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGV-TILPL  230 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~~-~~vp~  230 (358)
                      ....|..++|.+.+...++...+++..|++...++ ..|+|.++.. +.+|.
T Consensus       159 ~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~  210 (361)
T d1kewa_         159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPL  210 (361)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHH
Confidence            11224456888888888888888899998877775 5688876541 34454

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.27  E-value=4.5e-07  Score=77.71  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHh--cC--C------CCCeEEEEeCCCcHHhhhC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HM--D------TNAVVRGFLGQQQLEDALT  113 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~--~~--~------~~~~v~~~~~t~d~~~al~  113 (358)
                      +.+.||+|||| |..|+++|..|...+.  +|.|+++++.  .+..++  +.  .      ....+..   ++|++++++
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~--~~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a~~   76 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEE--EVRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYN   76 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHH--HHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHT
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHH--HHHHHhhccccccccccccccccccc---chhhhhccC
Confidence            34568999998 9999999999998887  9999998752  222222  11  1      1233543   468999999


Q ss_pred             CCCEEEEcC
Q 018265          114 GMDIVIIPA  122 (358)
Q Consensus       114 ~aDiVIi~a  122 (358)
                      +||+||++.
T Consensus        77 ~ad~iiiav   85 (189)
T d1n1ea2          77 GAEIILFVI   85 (189)
T ss_dssp             TCSCEEECS
T ss_pred             CCCEEEEcC
Confidence            999999974

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=7.2e-07  Score=73.66  Aligned_cols=102  Identities=18%  Similarity=0.227  Sum_probs=66.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      |||+|||+ |.+|+.++..|.+.|.  ++.++|++..................... .+.+ .+++.++|+||++.... 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESL-TAND-PDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEE-EESC-HHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCcccccccc-ccch-hhhhcccceEEEeeccc-
Confidence            89999998 9999999999999998  99999987622111111111111111111 1233 57789999999985321 


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCcc
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~  169 (358)
                                     -..+.++.+..+- ++..|+...|=++..
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccHH
Confidence                           1344556665543 688888888877654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.22  E-value=1.2e-06  Score=81.08  Aligned_cols=176  Identities=16%  Similarity=0.119  Sum_probs=103.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  121 (358)
                      +|||.|+||+|+||++++..|+..+.-..++.+|.....+....+... ....+..+.+    ...+.+++++.|.|++.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            689999999999999999999888763366667743211111111111 1123333222    13456778999999998


Q ss_pred             CCCCCCCC--CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc--c----HHHH----HHHHHHhCCCCCCcEE
Q 018265          122 AGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS--T----VPIA----AEVFKKVGTYDPKRLL  189 (358)
Q Consensus       122 ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~--~----t~~~----~~~~~~~~~~p~~kvi  189 (358)
                      |+......  .+..+.+..|+.....++....+....- +...|.-+..  .    .+..    ...........|...+
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~-i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF-HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEE-EEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhccccccc-cccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            87543221  1234567889999999999998887532 2222221110  0    0000    0000011122234568


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      |.+.+...++...+++..|++..-++ ..|+|.+.
T Consensus       160 ~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         160 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            88877777777777888888776664 45788554

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.13  E-value=4e-06  Score=77.15  Aligned_cols=170  Identities=14%  Similarity=0.030  Sum_probs=108.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh---HHHHHhcCCCCCeEEEEeCC----CcHHhhhCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG---VTADISHMDTNAVVRGFLGQ----QQLEDALTGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g---~~~dl~~~~~~~~v~~~~~t----~d~~~al~~a  115 (358)
                      ++++|.|+||+|++|++++..|.+.|.  +|..+|...  ...   ....+........++.+.+.    ........+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            456999999999999999999999998  999999643  111   11111111011223332211    1234556889


Q ss_pred             CEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC------ccHHHHHHHHHHhCCCCCCc
Q 018265          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN------STVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       116 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d------~~t~~~~~~~~~~~~~p~~k  187 (358)
                      |.|++.+....-+  ..+.......|+.....+.+.+.+.....+|...|..+.      ...        ...-..|..
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~--------E~~~~~p~~  164 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKV--------EDTIGKPLS  164 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC--------TTCCCCCCS
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCcc--------CCCCCCCCC
Confidence            9999887643211  223455778899999999999998876555444443221      111        111133456


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCC
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~  224 (358)
                      .+|.+.+...++...+++..+++..-++ ..|+|.+.+
T Consensus       165 ~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         165 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            7788888888888888899998877777 458887654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=7.7e-06  Score=75.00  Aligned_cols=167  Identities=13%  Similarity=0.061  Sum_probs=99.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----Cc-HHhhhCCCCEEEEc
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQ-LEDALTGMDIVIIP  121 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d-~~~al~~aDiVIi~  121 (358)
                      |||.|+||+|+||++++..|+..+.. +|..+|..... . ..+..   .+.++.+.+.    .+ .+.+++++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~-~-~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDA-I-SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGG-G-GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcc-h-hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            79999999999999999999887732 88999975411 1 11111   1233333221    12 23477899999999


Q ss_pred             CCCCCCCC--CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC-------CccHHHHHHHHHHhCCCCCCcEEEee
Q 018265          122 AGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-------NSTVPIAAEVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       122 ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-------d~~t~~~~~~~~~~~~~p~~kviG~t  192 (358)
                      |+.....+  ..-...+..|+.....+++.+.+....-  ++++...       ...... ........-..+...+|.+
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~--~~~ss~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~Y~~s  151 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI--IFPSTSEVYGMCSDKYFDED-HSNLIVGPVNKPRWIYSVS  151 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE--EEECCGGGGBTCCCSSBCTT-TCCCBCCCTTCGGGHHHHH
T ss_pred             cccccccccccCCccccccccccccccccccccccccc--cccccccccccccccccccc-cccccccccCCCcchhhhc
Confidence            88643221  1234567899999999999998876533  3322111       111000 0000000011233457777


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      .+...++....++..|++..-++ ..++|..
T Consensus       152 K~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~  182 (342)
T d2blla1         152 KQLLDRVIWAYGEKEGLQFTLFRPFNWMGPR  182 (342)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECSEECSS
T ss_pred             ccchhhhhhhhhcccCceeEEeecccccccc
Confidence            77777788888888888765553 3455543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.06  E-value=1e-05  Score=75.75  Aligned_cols=175  Identities=12%  Similarity=0.096  Sum_probs=102.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---------------h--H-HHHHhcCCCCCeEEEEeCC---
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------------G--V-TADISHMDTNAVVRGFLGQ---  105 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---------------g--~-~~dl~~~~~~~~v~~~~~t---  105 (358)
                      |||.|+||+|++|++++..|++.|.  +|+.+|.....               .  . ...+... ....+..+.+.   
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDICD   78 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCCC
Confidence            7999999999999999999999998  99999942100               0  0 0001000 01223332221   


Q ss_pred             -CcHHhhhCC--CCEEEEcCCCCCCC--CCC---HHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccH-HHH-HH
Q 018265          106 -QQLEDALTG--MDIVIIPAGVPRKP--GMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV-PIA-AE  175 (358)
Q Consensus       106 -~d~~~al~~--aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t-~~~-~~  175 (358)
                       ..+++++++  .|+|+++|+....+  -.+   -.+....|+.....+.+.+.+++.+..++..|.-..... ..- .+
T Consensus        79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~  158 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEE  158 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCS
T ss_pred             HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccccccc
Confidence             123445554  49999999754211  111   234568899999999999999998877766653321100 000 00


Q ss_pred             HHH--H--------hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCC
Q 018265          176 VFK--K--------VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (358)
Q Consensus       176 ~~~--~--------~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~  224 (358)
                      ...  .        .....+...+|.+.+....+...+++..+++...++ ..|+|.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~  218 (393)
T d1i24a_         159 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTD  218 (393)
T ss_dssp             SEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCT
T ss_pred             ccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCcc
Confidence            000  0        000122345666666666676777888888777775 468886543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.00  E-value=1.1e-05  Score=66.76  Aligned_cols=64  Identities=19%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||. |.+|+.+|..|+..|+  +|..+|+++.  ...++.....    ..   ..+.++++++||+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~~----~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAGA----ET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTTC----EE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhhh----hh---cccHHHHHhCCCeEEEEc
Confidence            79999998 9999999999999998  9999998752  2222332211    11   245789999999999984

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.97  E-value=6.6e-05  Score=68.89  Aligned_cols=112  Identities=14%  Similarity=-0.009  Sum_probs=72.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH---HHHhcCCCCCeEEEEe----CCCcHHhhhCCCCEE
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT---ADISHMDTNAVVRGFL----GQQQLEDALTGMDIV  118 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~---~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiV  118 (358)
                      .||+|+||+|+||++++..|++.|.  +|+...++. .....   .+....  ......+.    ....+.++++++|.|
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~v   87 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYP--GRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHST--TTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhcccc--ccccEEEeccccchhhhhhhcccchhh
Confidence            4999999999999999999999987  777655543 11111   111111  11222111    123456789999999


Q ss_pred             EEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +..++... ...+.......|+....++.+.+.++.--..++.+|
T Consensus        88 ~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S  131 (342)
T d1y1pa1          88 AHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             EECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             hhhccccc-ccccccccccchhhhHHHHHHhhhcccccccccccc
Confidence            99877542 334455666779999999999998864222344433

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.96  E-value=2e-05  Score=73.47  Aligned_cols=177  Identities=16%  Similarity=0.146  Sum_probs=103.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC----------c-hhHHHHHhcCC------CCCeEEEEeCC-C
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN----------T-PGVTADISHMD------TNAVVRGFLGQ-Q  106 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~----------~-~g~~~dl~~~~------~~~~v~~~~~t-~  106 (358)
                      -|||.|+||+||+|++++..|++ .+.  +|+.+|.-.          . ......+....      ....+..+.+. .
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            37999999999999999998875 566  899999521          1 11112222211      01223332221 2


Q ss_pred             c---HHhhh---CCCCEEEEcCCCCCCCC--CCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc-cH--HHHHH
Q 018265          107 Q---LEDAL---TGMDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS-TV--PIAAE  175 (358)
Q Consensus       107 d---~~~al---~~aDiVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~-~t--~~~~~  175 (358)
                      |   +++++   +++|+|+++|+......  .........|+.....+....++..++..+...+--+.. ..  ....+
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  159 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTN  159 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----C
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccc
Confidence            2   23333   57899999987543211  123445678999999999999988876554433211000 00  00000


Q ss_pred             --HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCC
Q 018265          176 --VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (358)
Q Consensus       176 --~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~  224 (358)
                        -+.....+.|...+|.+.+...++-..+.+..|++...++ ..++|....
T Consensus       160 ~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~  211 (383)
T d1gy8a_         160 AEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHED  211 (383)
T ss_dssp             CCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTT
T ss_pred             ccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCcc
Confidence              0000111334566777777777888888888898877775 568885543

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=2.2e-05  Score=72.17  Aligned_cols=113  Identities=19%  Similarity=0.078  Sum_probs=71.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhH---HHHHhcCCCCCeEEE-EeCCCcHHhhhC--CCCEEE
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV---TADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVI  119 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~---~~dl~~~~~~~~v~~-~~~t~d~~~al~--~aDiVI  119 (358)
                      .|.|+||+|++|++++..|+..+.  +|+.+|...  ....   ...+.+.. ...+.. +....+++.+++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~-v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHH-IPFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSC-CCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhcccC-CeEEEeecCCHHHHHHHHhccCCCEEE
Confidence            588999999999999999999987  999998643  1111   11122111 111111 000122334444  789999


Q ss_pred             EcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ++|+.....  .+........|......+.+..++.....++...|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            998865311  22345667789999999999999887665444433

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.88  E-value=6.1e-05  Score=62.20  Aligned_cols=95  Identities=14%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      .||+|||+ |.+|.++|..|...++..+|..+|.+. ....+.+..-    ... ..  +........++|+||++.-  
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~----~~~-~~--~~~~~~~~~~~dlIila~p--   71 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----IDE-GT--TSIAKVEDFSPDFVMLSSP--   71 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----CSE-EE--SCGGGGGGTCCSEEEECSC--
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc----chh-hh--hhhhhhhccccccccccCC--
Confidence            37999998 999999999999988766999999875 2222222211    111 11  1122344579999999842  


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  165 (358)
                                    ...+.++.+.+..+. ++.+++-+++-
T Consensus        72 --------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 --------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             --------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             --------------chhhhhhhhhhhccccccccccccccc
Confidence                          233445555555544 67777666544

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.2e-05  Score=70.68  Aligned_cols=166  Identities=11%  Similarity=0.040  Sum_probs=99.4

Q ss_pred             EE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcC---CCCCeEEEEeCC-Cc---HHhhh--CC
Q 018265           48 KV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM---DTNAVVRGFLGQ-QQ---LEDAL--TG  114 (358)
Q Consensus        48 KI-~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~---~~~~~v~~~~~t-~d---~~~al--~~  114 (358)
                      || .|+||+|+||++++..|+..|+  +|+-+|+...   .+..-++...   .....++.+.+. +|   +..++  .+
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   79 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK   79 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence            89 7999999999999999999998  9999998541   1111111111   011234443221 12   22333  35


Q ss_pred             CCEEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCC-C-eEEEEec------CCCC-ccHHHHHHHHHHhCCC
Q 018265          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP-K-AIVNLIS------NPVN-STVPIAAEVFKKVGTY  183 (358)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p-~-a~viv~t------NP~d-~~t~~~~~~~~~~~~~  183 (358)
                      .++|++.++.....  .....+....|+.....+.+.+++++- + .+++.+|      +|-. .+        ..-..+
T Consensus        80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~--------~E~~~~  151 (347)
T d1t2aa_          80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQ--------KETTPF  151 (347)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSB--------CTTSCC
T ss_pred             cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCC--------CCCCCC
Confidence            56888776643211  123455678899999999999988762 3 4566554      2211 11        111223


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecC
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg  223 (358)
                      .|...+|.+.+...++...+++..+++...++ ..++|...
T Consensus       152 ~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~  192 (347)
T d1t2aa_         152 YPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR  192 (347)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCC
Confidence            45567888877777777777888887655554 45777543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=2e-05  Score=71.23  Aligned_cols=159  Identities=13%  Similarity=0.100  Sum_probs=95.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhh--hCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA--LTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a--l~~aDiVIi~ag~  124 (358)
                      +||.|+||+|++|++++..|++.+.  +++++|....    .|+.+.            ....+.  ..+.|+|++.++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~------------~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDS------------RAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCH------------HHHHHHHhhcCCCEEEEcchh
Confidence            4999999999999999999999887  6666665321    111110            011122  2457899998754


Q ss_pred             CCCC---CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC-CCCccH--HHHHHH-HHHhCCCCCCcEEEeeeccHH
Q 018265          125 PRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTV--PIAAEV-FKKVGTYDPKRLLGVTMLDVV  197 (358)
Q Consensus       125 ~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN-P~d~~t--~~~~~~-~~~~~~~p~~kviG~t~lds~  197 (358)
                      ....   .....+.+..|+....++++.+.++.-+- +|.+|. -+.--.  .-+.|- .....-.+++..+|.+.+...
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~-~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E  143 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK-LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGI  143 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHH
Confidence            3211   12345667889999999999998886443 444322 111000  000000 000011122335788878888


Q ss_pred             HHHHHHHHHhCCCCCCCc-eEEEEecCC
Q 018265          198 RANTFVAEVLGLDPREVD-VPVVGGHAG  224 (358)
Q Consensus       198 R~~~~lA~~l~v~~~~v~-~~v~G~hg~  224 (358)
                      ++...+++..|++..-++ ..|+|.++.
T Consensus       144 ~~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         144 KLCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            888888888888777775 578897654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.79  E-value=7.5e-05  Score=67.34  Aligned_cols=166  Identities=15%  Similarity=0.025  Sum_probs=100.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-CcH---Hhhh--CCCCEEEEc
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQL---EDAL--TGMDIVIIP  121 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~---~~al--~~aDiVIi~  121 (358)
                      ||.|+||+|+||++++..|+.+|+  +|+.+|+.........+.+....++++.+... .|.   ...+  ...++++++
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence            899999999999999999999998  99999986521111112222222344443221 222   1112  246677777


Q ss_pred             CCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC------CCCccHHHHHHHHHHhCCCCCCcEEEeee
Q 018265          122 AGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (358)
Q Consensus       122 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN------P~d~~t~~~~~~~~~~~~~p~~kviG~t~  193 (358)
                      ++.....  .......+..|+.....+.+.++++.+..+++..|.      +.+...       .+..-+.+...+|.+.
T Consensus        80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~-------~E~~~~~p~~~Y~~sK  152 (321)
T d1rpna_          80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQ-------DENTPFYPRSPYGVAK  152 (321)
T ss_dssp             CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSB-------CTTSCCCCCSHHHHHH
T ss_pred             cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCC-------CCCCCccccChhHHHH
Confidence            6543211  123456678899999999999999987766665432      111110       0111223445567777


Q ss_pred             ccHHHHHHHHHHHhCCCCCCCc-eEEEEec
Q 018265          194 LDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~v~-~~v~G~h  222 (358)
                      +...++...+++..+++...++ +.++|..
T Consensus       153 ~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~  182 (321)
T d1rpna_         153 LYGHWITVNYRESFGLHASSGILFNHESPL  182 (321)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHhhcCCcEEEEEEecccCCC
Confidence            7777777777888887655554 3467753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.77  E-value=2.5e-05  Score=71.60  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=72.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhhC--CCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDALT--GMD  116 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~--~aD  116 (358)
                      +.+||.|+||+|+||++++..|+..|.  +|..+|++..  ... .+.....  ..+..+.+. +|   +.++++  ..|
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~-~~~~~~~--~~i~~~~~Dl~d~~~l~~~~~~~~~~   81 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSL-FETARVA--DGMQSEIGDIRDQNKLLESIREFQPE   81 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCH-HHHTTTT--TTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHH-Hhhhhcc--cCCeEEEeeccChHhhhhhhhhchhh
Confidence            457999999999999999999999998  9999998762  222 1111111  122222111 22   234444  458


Q ss_pred             EEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       117 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +|+++++.+...  ...-......|+.....+.+.+.+......++..|
T Consensus        82 ~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          82 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            899888654211  01224456779999999999999887655555443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.72  E-value=5.7e-05  Score=62.30  Aligned_cols=65  Identities=23%  Similarity=0.407  Sum_probs=48.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++||++||. |.+|+.+|..|...++  ++..+|++..  ...++.....   ..    ..++.++++++|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~--~~~~~~~~~~---~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAGA---SA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTTC---EE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchh--hhhhhhhhhc---cc----cchhhhhccccCeeeecc
Confidence            359999998 9999999999999998  9999998742  2233333221   11    245689999999999974

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.71  E-value=3.1e-05  Score=63.39  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=47.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||+ |.+|++++..|+..+.  ++.++|++..  ...++.....   +.   ...|.++++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~--~~~~l~~~~g---~~---~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLE--RSKEIAEQLA---LP---YAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHH--HHHHHHHHHT---CC---BCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHH--hHHhhccccc---ee---eechhhhhhhccceeeeec
Confidence            79999998 9999999999988876  9999997642  1222221100   11   1346788999999999985

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.67  E-value=0.00012  Score=65.69  Aligned_cols=73  Identities=12%  Similarity=0.074  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          274 AYAAAKFADACLRGLRGDAGVIECAY-VASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       274 A~ai~~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      +..++++|+||.+|.+.   ++.+++ .+|.+   |+|.++++||+|+++|+.++.. ++|++..++++......-+-.+
T Consensus       145 ~e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~~~~e~L~v  220 (270)
T d1s6ya2         145 SDAACSLISSIYNDKRD---IQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV-GDLPVAVRGLVQQIKSFERVAA  220 (270)
T ss_dssp             HHHHHHHHHHHHHTCCC---EEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEECCceEeeec-CCCcHHHHHHHHHHHHHHHHHH
Confidence            47899999999999763   555554 46665   8899999999999999999876 6999999998877554443334


Q ss_pred             H
Q 018265          350 Q  350 (358)
Q Consensus       350 ~  350 (358)
                      +
T Consensus       221 e  221 (270)
T d1s6ya2         221 E  221 (270)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.67  E-value=4.6e-05  Score=64.63  Aligned_cols=102  Identities=17%  Similarity=0.236  Sum_probs=61.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--------------CCCeEEEEeCCCcHHhhh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TNAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--------------~~~~v~~~~~t~d~~~al  112 (358)
                      |||+|||. |+||..+|..+. .+.  +++.||+++.  ....|....              .......   +++...+.
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~--~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~---~~~~~~~~   71 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHH--HHHHHhhcccccchhhHHHHhhhhhhhhhc---cchhhhhh
Confidence            89999998 999999997665 576  9999999861  111111110              1112222   24556888


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018265          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  162 (358)
                      .++|+++++...|.....+-.     ....+....+.+....+...+++-
T Consensus        72 ~~~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~iii~  116 (196)
T d1dlja2          72 KEAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSVNSHATLIIK  116 (196)
T ss_dssp             HHCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHHCSSCEEEEC
T ss_pred             hccccccccCCccccccCCCc-----ceeEEeehhhhhhhcccceeEEee
Confidence            999999998766642211111     123445555555556666655443

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.66  E-value=2.1e-05  Score=69.81  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (358)
                      |||.|+||+|+||++++..|...+   +++.+|.+... ...|+.+            ..++++.++  +.|+||++||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~------------~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCC------------HHHHHHHHHHcCCCEEEEeccc
Confidence            899999999999999999888776   56666665411 0011111            112344554  45999999985


Q ss_pred             CCC--CCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          125 PRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       125 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      ...  ...........|......+.+..++.+  .+++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~s  103 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYS  103 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhccc--ccccccc
Confidence            421  123345566788888888888887764  3455543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.64  E-value=3.1e-05  Score=66.13  Aligned_cols=104  Identities=12%  Similarity=0.100  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc-HHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ-LEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d-~~~al~~aDiVIi~ag  123 (358)
                      +.||.|+||+|++|++++..|+..+...+|+...++...          ..+.+...... .+ ......+.|.||+++|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~----------~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPRLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh----------hcccccccccchhhhhhccccchheeeeeee
Confidence            359999999999999999999998875566655443311          01112111000 01 1222356799999987


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEE
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  159 (358)
                      ...........+...|......+++..++...+-++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          72 TTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeccccccccccccchhhhhhhcccccccccccccc
Confidence            654333344566778888888999988876544433

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00022  Score=57.86  Aligned_cols=92  Identities=12%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      .||+|+||+|.||+-+...|+...  ...+++++......+........  ...+..   ..+ .++++++|+||++.+ 
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~--~~~~~~---~~~-~~~~~~~DivF~a~~-   74 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFD-LEALKALDIIVTCQG-   74 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTC--CCBCEE---TTC-HHHHHTCSEEEECSC-
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCC--ceeeec---ccc-hhhhhcCcEEEEecC-
Confidence            499999999999999997766654  35688888765532222211111  111111   234 356899999999863 


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~vi  160 (358)
                                     ..+.+++++.+.+.+.+++||
T Consensus        75 ---------------~~~s~~~~~~~~~~g~~~~VI   95 (146)
T d1t4ba1          75 ---------------GDYTNEIYPKLRESGWQGYWI   95 (146)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCCEEE
T ss_pred             ---------------chHHHHhhHHHHhcCCCeecc
Confidence                           355667777777665555443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.52  E-value=4e-05  Score=69.70  Aligned_cols=173  Identities=11%  Similarity=-0.019  Sum_probs=94.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHH----HHHhcCCCCCeEEEEeCC-CcH---Hhhh--C
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVT----ADISHMDTNAVVRGFLGQ-QQL---EDAL--T  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~----~dl~~~~~~~~v~~~~~t-~d~---~~al--~  113 (358)
                      .|+.|+||+|++|++++..|+..|+  +|+.+|+...   ....    .+.... ....+..+.+. ++.   +.++  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNV-NKALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhc-cccceEEEEccccCHHHHHHHHhhh
Confidence            3899999999999999999999998  9999997431   0110    111111 11223332211 232   2223  4


Q ss_pred             CCCEEEEcCCCCCCCC--CCHHhHHHHHHHHHHHHHHHHHhhC----CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          114 GMDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCC----PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      +.|+||++|+......  ..-......|......+...+++.+    ...+++..+ .+...... .....+..-+.|..
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~s-s~~~~~~~-~~~~~E~~~~~p~~  156 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG-SSEMFGST-PPPQSETTPFHPRS  156 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE-EGGGGTTS-CSSBCTTSCCCCCS
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecc-cceecccC-CCCCCCCCCCCCcc
Confidence            6799999997643211  1233455677777777766665432    223333322 11110000 00000111233456


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCc-eEEEEecCC
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~-~~v~G~hg~  224 (358)
                      .+|.+.+...++....++..+++...++ ..|+|.+..
T Consensus       157 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         157 PYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            6788777777777778888888766664 458887544

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.0015  Score=57.43  Aligned_cols=161  Identities=16%  Similarity=0.167  Sum_probs=95.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc----------HHhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~al  112 (358)
                      ...+.|+||++.+|.+++..|++.|.  .|++.|++.  .+..+.++........+..+.. -+|          ..+.+
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            34689999999999999999999998  999999876  3334445554332223333211 122          22335


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHhHHHHH----HHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNIN----AGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N----~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      ..-|++|+.||.....   ..+   -...+..|    .-..+.+.+.+++.. ..+.||+++......            
T Consensus        88 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------  155 (257)
T d1xg5a_          88 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR------------  155 (257)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS------------
T ss_pred             CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcC------------
Confidence            6789999999864321   122   12233444    456677777777665 467888876544321            


Q ss_pred             CCCC--CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDP--KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~--~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|.  .-.++.+.-.-..|-+.+|..|.-....|++.++.
T Consensus       156 ~~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~  196 (257)
T d1xg5a_         156 VLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCIS  196 (257)
T ss_dssp             CCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEe
Confidence            1111  11133333333446777787774445677766665

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.49  E-value=0.00031  Score=57.05  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=70.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      |||+|+||+|.+|+-+...|....  ...++.++......|...++.    ........ ..| .+.++++|+||++.. 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~----~~~~~~~~-~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFG----KDAGMLHD-AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSS----SCCCBCEE-TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccC----Ccceeeec-ccc-hhhhccccEEEEecC-
Confidence            799999999999999998776543  245888886654333322111    11111111 234 366899999999853 


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeecc
Q 018265          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (358)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~ld  195 (358)
                                     -...+++++.+.+.+.+++|  +.|..|.             .++++-++++.-+-
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf-------------R~~~dvpl~lPEiN  114 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL-------------RMDKEAIITLDPVN  114 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT-------------TTCTTEEEECHHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc-------------cccCCceEEeCCcC
Confidence                           35567888888887776654  4555543             25556677775443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.49  E-value=0.00012  Score=61.08  Aligned_cols=74  Identities=14%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .|||+|||. |.+|+.++..|+..++  +|..||+++.+.  ...+.......+.........++-..+..++.+++..
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            489999998 9999999999999998  999999875221  1111111111122332211123344556777777763

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.48  E-value=0.00017  Score=61.10  Aligned_cols=109  Identities=18%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEEEEcCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      +.+|.|+||+|++|++++..|+..|....++.++++.  ....++....  ..+.. .....++.++++++|.||++++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~--~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA--QGKEKIGGEA--DVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCH--HHHHHTTCCT--TEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCH--HHHHhccCCc--EEEEeeeccccccccccccceeeEEEEee
Confidence            4499999999999999999999988622444444432  1112222111  11111 11123556789999999998764


Q ss_pred             CCCC---------------CCCHHhHHHHHHHHHHHHHHHHHhhCCCeE
Q 018265          125 PRKP---------------GMTRDDLFNINAGIVKTLCEGIAKCCPKAI  158 (358)
Q Consensus       125 ~~~~---------------g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~  158 (358)
                      ....               ..........|....+.++...........
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (252)
T d2q46a1          79 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHI  127 (252)
T ss_dssp             CCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEE
T ss_pred             ccccccccchhhhhhcccccccchhhhccccccceeecccccccccccc
Confidence            3210               011233445566777777777776654433

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.48  E-value=0.00031  Score=62.95  Aligned_cols=73  Identities=12%  Similarity=0.115  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 018265          274 AYAAAKFADACLRGLRGDAGVIECAY-VASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI  349 (358)
Q Consensus       274 A~ai~~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  349 (358)
                      +..++++|++|.+|.+   ..+.+++ .+|.+   |+|.++++||+|+++|+.++-. ++|++..++++..-...-+-.+
T Consensus       152 ~e~av~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~k~~e~Ltv  227 (276)
T d1u8xx2         152 ASYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV-GTIPQFQKGLMEQQVSVEKLTV  227 (276)
T ss_dssp             THHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC---cEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeeec-CCCcHHHHHHHHHHHHHHHHHH
Confidence            3678999999999976   2444554 46764   8899999999999999999876 6999999988866444333333


Q ss_pred             H
Q 018265          350 Q  350 (358)
Q Consensus       350 ~  350 (358)
                      +
T Consensus       228 e  228 (276)
T d1u8xx2         228 E  228 (276)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.47  E-value=0.00011  Score=62.22  Aligned_cols=82  Identities=17%  Similarity=0.188  Sum_probs=56.4

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEE-EeCCCcHHhhhCCCCEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIV  118 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiV  118 (358)
                      .+.+..+|.|+||+|.+|..++..|++.|.  +++++|++.  ....+..+........... .....+.++++.++|+|
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCee
Confidence            455667999999999999999999999997  999999986  2222222221111011111 12234677889999999


Q ss_pred             EEcCCCC
Q 018265          119 IIPAGVP  125 (358)
Q Consensus       119 Ii~ag~~  125 (358)
                      |.++|.+
T Consensus        97 in~Ag~g  103 (191)
T d1luaa1          97 FTAGAIG  103 (191)
T ss_dssp             EECCCTT
T ss_pred             eecCccc
Confidence            9998864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.47  E-value=6.9e-05  Score=61.01  Aligned_cols=64  Identities=17%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||+|||. |.+|+.++..|.+.++  ++..+|.+....... .....   .+.     .+..+++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~---~~~-----~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV---GVT-----ETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH---TCE-----ECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc---ccc-----ccHHHHHhhcCeEEEEe
Confidence            79999998 9999999999999998  889998765221111 11111   111     12468899999999984

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00015  Score=66.15  Aligned_cols=110  Identities=20%  Similarity=0.116  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------chhHHHHHhcCCCCCeEEEEeCC-Cc---HHhhhCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------TPGVTADISHMDTNAVVRGFLGQ-QQ---LEDALTG  114 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~~  114 (358)
                      .||.|+||+|+||++++..|+..|.  +|+.+|...        .......+.... ..+++.+... +|   +++++.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc
Confidence            3899999999999999999999987  889998532        111111111111 1223332221 23   3445555


Q ss_pred             CC--EEEEcCCCCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhCCCeEE
Q 018265          115 MD--IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (358)
Q Consensus       115 aD--iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  159 (358)
                      .|  +|+++|+.+...  -....+....|+.....+....++++.+-++
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i  128 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc
Confidence            55  566777754211  0124566788999999999999988755433

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.44  E-value=0.00057  Score=53.89  Aligned_cols=99  Identities=20%  Similarity=0.205  Sum_probs=59.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCc---HHhh-hCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi~a  122 (358)
                      |||.|+|+ |.+|+.++..|...|.  +++++|.++.  .+.++.......-+.+  ..+|   ++++ +++||.++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~--~~~~~~~~~~~~vi~G--d~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKD--ICKKASAEIDALVING--DCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHHHHHCSSEEEES--CTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChh--hhhhhhhhhhhhhccC--cccchhhhhhcChhhhhhhcccC
Confidence            89999998 9999999999999888  9999999862  1112221101011111  1122   2222 58999998874


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      ...           ..|+. +..   ..++++++-++..+.||..
T Consensus        74 ~~d-----------~~N~~-~~~---~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          74 GKE-----------EVNLM-SSL---LAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             SCH-----------HHHHH-HHH---HHHHTTCCCEEEECSSTTH
T ss_pred             CcH-----------HHHHH-HHH---HHHHcCCceEEEEecCHHH
Confidence            211           34542 222   3345667656555566653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.43  E-value=0.00023  Score=59.22  Aligned_cols=97  Identities=15%  Similarity=0.161  Sum_probs=61.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-CCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      -+|+|||. |.+|+.+|..|+..|+  +++.+|++..+  ..++.... ............++.+++.++|.+|++... 
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~-   76 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKA-   76 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCT-
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHhccccccccchhhhhhhhhhhcccceEEEecCc-
Confidence            37999998 9999999999999998  99999997622  22332221 111122211224566888999999997421 


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  163 (358)
                                    .+.+.++...+.... |..++|..|
T Consensus        77 --------------~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          77 --------------GQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             --------------THHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             --------------hHHHHHHHHHHHhccccCcEEEecC
Confidence                          133444445555554 555666554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.39  E-value=8.8e-05  Score=65.25  Aligned_cols=89  Identities=21%  Similarity=0.215  Sum_probs=59.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEEEcCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (358)
                      |||.|+||+|++|++++..|..+|+  +|+.+|+...     |+.+.            .+++++++  +.|+||++++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~------------~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNV------------LAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCH------------HHHHHHHHHcCCCEEEeeccc
Confidence            8999999999999999999999888  9999987541     12111            12234443  67999998875


Q ss_pred             CCCC--CCCHHhHHHHHHHHHHHHHHHHHhhC
Q 018265          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCC  154 (358)
Q Consensus       125 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (358)
                      ....  ..........|......+.+......
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~   94 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG   94 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             cccccccccchhhccccccccccccccccccc
Confidence            4211  11233445666667767766666554

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00021  Score=62.78  Aligned_cols=161  Identities=15%  Similarity=0.193  Sum_probs=91.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +.+++.|+||++.+|..++..|+..|.  +|++.|+++  +.....++..... ..++.....-...-+.+..-|++|..
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn   83 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence            345899999999999999999999998  999999876  2222233322110 00110000000112235688999999


Q ss_pred             CCCCCCCC---CCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 018265          122 AGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (358)
Q Consensus       122 ag~~~~~g---~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~  191 (358)
                      ||......   .+.   ...+..|+    .+.+.+++.+.+....+.|++++.-....            +.|..-.++.
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~~~~~~~Y~a  151 (244)
T d1pr9a_          84 AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------AVTNHSVYCS  151 (244)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBHHHHH
T ss_pred             cccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc------------cccchhhhhh
Confidence            98754221   122   22344444    45566666655555567777776433221            2332233444


Q ss_pred             eeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      +.-.-..+-+.+|..++  +..|++-.+-.
T Consensus       152 sKaal~~lt~~lA~el~--~~gIrvN~I~P  179 (244)
T d1pr9a_         152 TKGALDMLTKVMALELG--PHKIRVNAVNP  179 (244)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHhC--CCcEEEEEEee
Confidence            43334457788888885  56676655543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.26  E-value=0.00076  Score=55.74  Aligned_cols=80  Identities=19%  Similarity=0.246  Sum_probs=55.2

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      .+.++-||+|+|+ |.+|.+-+...+.-|-  ++..+|.+. ......+...  ...... .+....+++.+++||+||-
T Consensus        28 ~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~--~~~~~~-~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          28 PGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFG--SRVELL-YSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             TTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG--GGSEEE-ECCHHHHHHHHHTCSEEEE
T ss_pred             CCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhc--ccceee-hhhhhhHHHhhccCcEEEE
Confidence            3577889999999 9999999988887775  999999976 2222221111  111222 2233467889999999999


Q ss_pred             cCCCCCC
Q 018265          121 PAGVPRK  127 (358)
Q Consensus       121 ~ag~~~~  127 (358)
                      ++-+|-+
T Consensus       102 aalipG~  108 (168)
T d1pjca1         102 AVLVPGR  108 (168)
T ss_dssp             CCCCTTS
T ss_pred             eeecCCc
Confidence            9877643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.26  E-value=0.0001  Score=59.98  Aligned_cols=65  Identities=15%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |||++||+ |.+|++++..|...+. .++.++|++..  ...++....   .+...   ++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~--~~~~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAE--KRERLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHH--HHHHHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChh--HHHHhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            79999998 9999999998776652 39999998752  122232211   12222   343 5588999999984

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=0.00079  Score=52.91  Aligned_cols=69  Identities=14%  Similarity=0.177  Sum_probs=45.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC--CCcHHhh-hCCCCEEEEcCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--QQQLEDA-LTGMDIVIIPAG  123 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t~d~~~a-l~~aDiVIi~ag  123 (358)
                      |++|+|+ |.+|+.++..|...|.  +++++|.++  ..+.++.+..  ..+-.-..  ...++++ +.+||.||++.+
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~--~~~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINE--EKVNAYASYA--THAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCH--HHHHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcH--HHHHHHHHhC--CcceeeecccchhhhccCCccccEEEEEcC
Confidence            7899998 9999999999999998  899999975  2222233221  11111111  1223333 789999888753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.22  E-value=0.00033  Score=61.98  Aligned_cols=77  Identities=17%  Similarity=0.099  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch-hHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP-GVTADISHMDTNAVVRGFLG----QQQLEDALTGMDI  117 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~-g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDi  117 (358)
                      +++||.|+||+|++|++++..|+..|.  +|+.++++.  .. .....+.... ...+..+.+    ..+..+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~v~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc-cCCcEEEEeecccchhhhhhccCcch
Confidence            467999999999999999999999887  888888765  11 1111111110 111222211    1345678899999


Q ss_pred             EEEcCCC
Q 018265          118 VIIPAGV  124 (358)
Q Consensus       118 VIi~ag~  124 (358)
                      ++.+++.
T Consensus        79 ~~~~~~~   85 (312)
T d1qyda_          79 VISALAG   85 (312)
T ss_dssp             EEECCCC
T ss_pred             hhhhhhh
Confidence            9997653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.20  E-value=0.00039  Score=61.22  Aligned_cols=158  Identities=14%  Similarity=0.039  Sum_probs=91.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH----------Hhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al  112 (358)
                      .+.+.|+||++.+|..++..|+..|.  .|++.|++.  ++....++...   ..+..+.. -+|.          .+.+
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34788999999999999999999998  999999876  22233334321   12222211 1221          2234


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---hHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMTRD---DLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      -.-|++|..||.....   ..+..   ..+..|+    ...+..++.+.+....+.||+++.-....            +
T Consensus        81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~------------~  148 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV------------G  148 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS------------C
T ss_pred             CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec------------c
Confidence            5789999999864322   12222   2344444    45666667776665556778776543222            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.|+.+.-.-..|.+.+|..+...+..|++-.+-
T Consensus       149 ~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~  186 (251)
T d1zk4a1         149 DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVH  186 (251)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEe
Confidence            23222344443333446677776644446667655554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.18  E-value=0.0015  Score=57.28  Aligned_cols=155  Identities=19%  Similarity=0.231  Sum_probs=90.9

Q ss_pred             EE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH----------HhhhC
Q 018265           48 KV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDALT  113 (358)
Q Consensus        48 KI-~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  113 (358)
                      || .|+||++.+|..++..|+..|.  .|++.|+++  ++....++.+..  .++..+.. -+|.          .+.+-
T Consensus         2 KValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            76 6789999999999999999998  999999986  333444555432  12222111 1121          22346


Q ss_pred             CCCEEEEcCCCCCCCC---CCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      .-|++|..||......   .+.   ...+..|+    ...+...+.+.+....+.|++++.-....            +.
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~  145 (255)
T d1gega_          78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------GN  145 (255)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CC
T ss_pred             CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------cC
Confidence            8999999998753211   221   22344454    44455666667776678777776443221            12


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      |..-.|+.+.-.-..+-+.+|..++  +..|++-.+-
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  180 (255)
T d1gega_         146 PELAVYSSSKFAVRGLTQTAARDLA--PLGITVNGYC  180 (255)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccccchhCHHHHHhhHHHHHHHhh--hhCcEEEEEe
Confidence            2222233333333456788888875  5566555544

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=0.0011  Score=53.30  Aligned_cols=52  Identities=21%  Similarity=0.392  Sum_probs=42.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .||+|||+.|.+|..++..|...|+  ++..+|++..                      .+.++.+.++|++++..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~----------------------~~~~~~~~~~~~v~~~~   61 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY--PISILDREDW----------------------AVAESILANADVVIVSV   61 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCG----------------------GGHHHHHTTCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC--CcEecccccc----------------------cccchhhhhcccccccc
Confidence            4999999449999999999999998  9999998641                      11245678999999874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00039  Score=60.92  Aligned_cols=155  Identities=17%  Similarity=0.203  Sum_probs=89.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcH---H---hhhCCCCE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQL---E---DALTGMDI  117 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~---~---~al~~aDi  117 (358)
                      .+++.|+||++.+|..++..|+..|.  .|++.|+++  +.....++....   .+. . .-+|.   +   +.+..-|+
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~---~~~-~-Dv~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE---PVC-V-DLGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEE-C-CTTCHHHHHHHHTTCCCCSE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe---EEE-E-eCCCHHHHHHHHHHcCCCeE
Confidence            45889999999999999999999998  999999875  222222332211   011 0 11221   2   22357899


Q ss_pred             EEEcCCCCCCCC---CCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 018265          118 VIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (358)
Q Consensus       118 VIi~ag~~~~~g---~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~k  187 (358)
                      +|..||......   .+.   ...+..|+    .+.+...+.+.+....+.+|+++......            +.|..-
T Consensus        78 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~~~  145 (242)
T d1cyda_          78 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------TFPNLI  145 (242)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBH
T ss_pred             EEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc------------cCCccc
Confidence            999998754221   222   22344444    34455566655555567777776543221            222222


Q ss_pred             EEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      .|+.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       146 ~Y~asKaal~~lt~~lA~e~~--~~gIrvN~I~P  177 (242)
T d1cyda_         146 TYSSTKGAMTMLTKAMAMELG--PHKIRVNSVNP  177 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             cccchHHHHHHHHHHHHHHhC--ccCeecccCCC
Confidence            344443334457788888874  56676655554

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.07  E-value=0.00032  Score=61.49  Aligned_cols=76  Identities=20%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---h-hHHHHHhcCCCCCeEEEEeC----CCcHHhhhCCCCE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---P-GVTADISHMDTNAVVRGFLG----QQQLEDALTGMDI  117 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~-g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDi  117 (358)
                      ++||.|+||+|++|++++..|+..|.  +|..++++..   . .....+.... ...+..+.+    ..+..++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhhhcee
Confidence            35999999999999999999999987  8999998651   1 1111111110 011121111    1234577899999


Q ss_pred             EEEcCCC
Q 018265          118 VIIPAGV  124 (358)
Q Consensus       118 VIi~ag~  124 (358)
                      |+..++.
T Consensus        80 vi~~~~~   86 (307)
T d1qyca_          80 VISTVGS   86 (307)
T ss_dssp             EEECCCG
T ss_pred             eeecccc
Confidence            9998754

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0015  Score=57.45  Aligned_cols=169  Identities=9%  Similarity=0.024  Sum_probs=91.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCC---cHHhhhCCCCEEEEcCCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ---QLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~---d~~~al~~aDiVIi~ag~~  125 (358)
                      |.|+||+|++|++++..|+++|. .+|..+|.-........+.+... ..........   .....+.++++|++.|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNI-ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCC-SEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccch-hhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999999874 27888884331111122222211 1111100000   0012357889999988766


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHH
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE  205 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~  205 (358)
                      .............|......+.+.....+..  +++.+...-...+- ..........++...+|.+.+....+...+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~--~v~~ss~~~~~~~~-~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~  156 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP--FLYASSAATYGGRT-SDFIESREYEKPLNVYGYSKFLFDEYVRQILP  156 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC--EEEEEEGGGGTTCC-SCBCSSGGGCCCSSHHHHHHHHHHHHHHHHGG
T ss_pred             ccccccccccccccccccccccccccccccc--cccccccccccccc-ccccccccccccccccccccchhhhhcccccc
Confidence            5555556666777788888888888877643  33322111000000 00000000122344566666666666666666


Q ss_pred             HhCCCCCCCc-eEEEEec
Q 018265          206 VLGLDPREVD-VPVVGGH  222 (358)
Q Consensus       206 ~l~v~~~~v~-~~v~G~h  222 (358)
                      ..+.+...++ ..++|..
T Consensus       157 ~~~~~~~~~r~~~vyGp~  174 (307)
T d1eq2a_         157 EANSQIVGFRYFNVYGPR  174 (307)
T ss_dssp             GCSSCEEEEEECEEESSS
T ss_pred             ccccccccccceeEeecc
Confidence            6676655554 3477753

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=97.00  E-value=0.0013  Score=58.69  Aligned_cols=53  Identities=15%  Similarity=0.022  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEEEEEcCCceEEEccCCCCC
Q 018265          275 YAAAKFADACLRGLRGDAGVIECAY-VASTV---TELPFFASKVRLGRAGIEEIYSLGPLN  331 (358)
Q Consensus       275 ~ai~~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~  331 (358)
                      ..++++|+||.+|++.   ++.+++ .+|.+   |+|.+++|||+|+++|+.++.- +++.
T Consensus       153 e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~v-g~~~  209 (278)
T d1vjta2         153 EQHIPFINAIANNKRV---RLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREKV-EPDL  209 (278)
T ss_dssp             CSHHHHHHHHHHCCCE---EEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECCC-CSCC
T ss_pred             HHHHHHHHHHhCCCCe---EEEEECCCCCcCCCCCchhheEeEEEEeCCceeeeec-CCCC
Confidence            4668999999999763   454554 46765   8899999999999999999865 3443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.99  E-value=0.0033  Score=55.41  Aligned_cols=159  Identities=14%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCc---HHh-------
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LED-------  110 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------  110 (358)
                      +.+.+.|+||++.+|.+++..|+..|.  .|++.|++.   ++....++....  ..+..+.. -+|   .++       
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            445788999999999999999999998  999999875   223334444322  22222111 112   212       


Q ss_pred             hhCCCCEEEEcCCCCCCCC---CCH---HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          111 ALTGMDIVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g---~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      .+..-|++|..||......   .+.   ...+..|    ....+..++.+.+......|++++......           
T Consensus        82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~-----------  150 (261)
T d1geea_          82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-----------  150 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-----------
T ss_pred             HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc-----------
Confidence            2347899999998754221   222   2234445    455667777777665556677666443222           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                       +.|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       151 -~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I~P  188 (261)
T d1geea_         151 -PWPLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNIGP  188 (261)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEEE
T ss_pred             -cCccccccccCCccchhhHHHHHHHhh--hhCcEEEEEee
Confidence             222222344443344567788888885  56676666554

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.0015  Score=59.22  Aligned_cols=61  Identities=15%  Similarity=0.084  Sum_probs=47.0

Q ss_pred             HHHHHHHHHccCCCCCcEEEeeE-EeCCC---CCccEEEEEEEEcCCceEEEccCCCCCHHHHH-HHHH
Q 018265          277 AAKFADACLRGLRGDAGVIECAY-VASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERA-GLEK  340 (358)
Q Consensus       277 i~~ii~ai~~~~~~~~~v~~~s~-~~g~~---~~~~~~svPv~ig~~Gv~~i~~~~~L~~~E~~-~l~~  340 (358)
                      ++++|.||.+|++.   ++.+.+ .+|.+   |+|.+++|||+|+++|+.++.-.++|++.-.+ +++.
T Consensus       184 a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~gl~~~  249 (308)
T d1obba2         184 HIPFIDALLNDNKA---RFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVKYYLRP  249 (308)
T ss_dssp             HHHHHHHHHHCCCE---EEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHHHTHHH
T ss_pred             HHHHHHHHHcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHHHHHHHHH
Confidence            78999999999763   555554 46765   88999999999999999998632589986644 5544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.94  E-value=0.0049  Score=53.94  Aligned_cols=154  Identities=16%  Similarity=0.171  Sum_probs=90.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc---HH-------hhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LE-------DAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~-------~al  112 (358)
                      ...+.|+||++.+|..++..|+..|.  +|++.|++.  ++....++...     +..+. .-+|   .+       +.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~-----~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGPA-----ACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCTT-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCc-----eEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            34788999999999999999999997  999999876  33334444211     11111 0112   11       223


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---HHhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      -.-|++|..+|......   .+   -...+..|+    .+.+.+++.+.+....+.|++++.-....            +
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------~  145 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR------------G  145 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------C
T ss_pred             CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc------------c
Confidence            57899999998653221   12   223345554    44556666666665567888876443221            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       146 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V~  181 (256)
T d1k2wa_         146 EALVGVYCATKAAVISLTQSAGLNLI--RHGINVNAIA  181 (256)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccccchhhhhhHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            22222333433334457788888875  5566554443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.91  E-value=0.005  Score=54.04  Aligned_cols=158  Identities=16%  Similarity=0.130  Sum_probs=89.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH----------HhhhC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDALT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  113 (358)
                      +.+.|+||++-+|..++..|+..|.  .|++.|++.  +.....++........+..+.. -+|.          .+.+-
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4788999999999999999999997  999999976  2222333332211122222111 1221          12246


Q ss_pred             CCCEEEEcCCCCCCCC----CCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 GMDIVIIPAGVPRKPG----MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g----~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      .-|++|..||.....+    .+.   ...+..|+    ...+...+.+++. ..+.||+++.-....            +
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~------------~  149 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASVGGIR------------G  149 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTS------------B
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh-cCCCCcccccHhhcc------------C
Confidence            7999999998642221    222   22344454    4445555555554 356677766443222            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      .|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       150 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~i~P  186 (258)
T d1iy8a_         150 IGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRINAIAP  186 (258)
T ss_dssp             CSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCceEEEEee
Confidence            23222344443334457788888875  56676665553

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.85  E-value=0.0061  Score=55.15  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-Cc----HHhhhCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ----LEDALTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~al~~aDiVI  119 (358)
                      ++++|+|+||+|++|++++..|+..|.  +|+.+-++........+...   +.+..+.+. .|    ++.+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhccc---CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            356999999999999999999999887  77777665422222233322   222322221 12    456889999988


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      +.....   .       ..|....+.++.+..+.+-.-+++..|
T Consensus        77 ~~~~~~---~-------~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQ---A-------GDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCST---T-------SCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eecccc---c-------chhhhhhhHHHHHHHHhCCCceEEEee
Confidence            864321   1       123344455666666665333444433

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.84  E-value=0.00059  Score=55.89  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=31.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |||+||||+|.+|+++|..|+..|.  +|++.++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            8999996669999999999999998  999999986

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.75  E-value=0.014  Score=51.11  Aligned_cols=161  Identities=17%  Similarity=0.103  Sum_probs=90.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCc----------H
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ----------L  108 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d----------~  108 (358)
                      ..+..++.|+||++.+|..++..|+..|.  +|++.|.+.   ++..+.++....  ..+..+. .-+|          .
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHH
Confidence            34556899999999999999999999998  999999875   222233343322  1222111 1122          2


Q ss_pred             HhhhCCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          109 EDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      .+.+-.-|++|..+|......   .+   ....+..|+.-...+++.+..+- .++.+++++.-....           .
T Consensus        91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~-----------~  159 (272)
T d1g0oa_          91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA-----------K  159 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC-----------S
T ss_pred             HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc-----------c
Confidence            334567899999988654321   11   23345556655555555555443 345555554332111           1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..+..-.++.+.-.-..+-+.+|..++  +..|++-.+-
T Consensus       160 ~~~~~~~Y~asKaal~~ltk~lA~e~~--~~gIrVN~I~  196 (272)
T d1g0oa_         160 AVPKHAVYSGSKGAIETFARCMAIDMA--DKKITVNVVA  196 (272)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhc--hhCeEEEEEc
Confidence            122122244443333457788888885  4566554444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.75  E-value=0.0031  Score=51.05  Aligned_cols=71  Identities=14%  Similarity=0.117  Sum_probs=47.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe--CCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~a  122 (358)
                      .||+|+|| |.+|+++|..|...|+  +|+++|++..  .+.++.............  .....++.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhcccccccccccccchhhhHhhhhccceeEeec
Confidence            49999998 9999999999999998  9999999752  333444322111111110  1123456678889888764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.73  E-value=0.004  Score=52.10  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=66.2

Q ss_pred             cccccccCC-CCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCcHH
Q 018265           32 GLGRMDCRA-KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLE  109 (358)
Q Consensus        32 ~~~~~~~~~-~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~  109 (358)
                      .|.+..+.. .......+|+|+|. |.+|..++..+..-+.  ++..+|.... .....+..       +..   ..+++
T Consensus        29 ~w~~~~~~~~~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~   95 (188)
T d2naca1          29 GWNIADCVSHAYDLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATRE   95 (188)
T ss_dssp             CCCHHHHHTTCCCCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHH
T ss_pred             CCCCcccCCcceeccccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHH
Confidence            454433322 23455679999998 9999999999987666  8999998652 22222111       111   24678


Q ss_pred             hhhCCCCEEEEcCCCC-CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          110 DALTGMDIVIIPAGVP-RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       110 ~al~~aDiVIi~ag~~-~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      +.+++||+|++..... ...++-..              +.+....+++++||++--
T Consensus        96 ~~l~~sD~v~~~~plt~~T~~li~~--------------~~l~~mk~ga~lIN~aRG  138 (188)
T d2naca1          96 DMYPVCDVVTLNCPLHPETEHMIND--------------ETLKLFKRGAYIVNTARG  138 (188)
T ss_dssp             HHGGGCSEEEECSCCCTTTTTCBSH--------------HHHTTSCTTEEEEECSCG
T ss_pred             HHHHhccchhhcccccccchhhhHH--------------HHHHhCCCCCEEEecCch
Confidence            9999999999975332 21222111              123334478899998643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.73  E-value=0.0043  Score=54.51  Aligned_cols=157  Identities=15%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC-Cc----------HHhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-QQ----------LEDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~~al  112 (358)
                      ...+.|+||++.+|..++..|+..|.  .|++.|+++  ++....++....  .++..+... +|          ..+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35788999999999999999999998  999999976  333344554432  222222111 12          12334


Q ss_pred             CCCCEEEEcCCCCCCCC----CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      -.-|++|..+|.....+    .+   ....+..|+.    ..+...+.+.+. ..+.||+++.....            .
T Consensus        81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~~------------~  147 (260)
T d1zema1          81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAGV------------K  147 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH------------S
T ss_pred             CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhhc------------c
Confidence            67999999998643222    22   2223444543    455556655543 56777777643211            1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      +.|..-.|+.+.-....|-+.+|..++  +..|++-.+-.
T Consensus       148 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~P  185 (260)
T d1zema1         148 GPPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAISP  185 (260)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEecc
Confidence            233333445544344557788888885  56676655553

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.0018  Score=56.02  Aligned_cols=157  Identities=15%  Similarity=0.143  Sum_probs=87.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +.+.+++.|+||++.+|..++..|++.|.  +|++.|+++.  ...+..+.....+++.  .-....+.+..-|++|..|
T Consensus         1 gLkgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~--~l~~~~~~~~~~Dv~~--~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           1 GIRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSGHRYVVCDLRK--DLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTCSEEEECCTTT--CHHHHHHHSCCCSEEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH--HHHhcCCcEEEcchHH--HHHHHHHHhCCCcEEEecc
Confidence            35667999999999999999999999998  9999998741  1111110000011100  0012345678899999999


Q ss_pred             CCCCCCC---CCHH---hHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee
Q 018265          123 GVPRKPG---MTRD---DLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       123 g~~~~~g---~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t  192 (358)
                      |.+....   .+..   ..+..|+    .+.+.+.+.+++. ..+.+|+++.-...            .+.+..-.++.+
T Consensus        75 G~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~G~ii~i~S~~~~------------~~~~~~~~Y~as  141 (234)
T d1o5ia_          75 GGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITSFSVI------------SPIENLYTSNSA  141 (234)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SCCTTBHHHHHH
T ss_pred             cccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc-cccccccccccccc------------ccccccccchhH
Confidence            9764321   2222   2234444    3566666666654 45666666542211            112222223333


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          193 MLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .-.-..|-+.+|..++  +..|++-.+-
T Consensus       142 Kaal~~ltk~lA~ela--~~gIrVN~I~  167 (234)
T d1o5ia_         142 RMALTGFLKTLSFEVA--PYGITVNCVA  167 (234)
T ss_dssp             HHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhc--ccCeEEeecc
Confidence            3233456788888875  4556554443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.69  E-value=0.0073  Score=52.75  Aligned_cols=155  Identities=15%  Similarity=0.122  Sum_probs=89.6

Q ss_pred             EE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC-CcH----------HhhhC
Q 018265           48 KV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-QQL----------EDALT  113 (358)
Q Consensus        48 KI-~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d~----------~~al~  113 (358)
                      || .|+||++.+|.+++..|++.|.  .|++.|+++  ++....++....  ..+..+... +|.          .+.+-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            45 6889999999999999999998  999999976  333444554432  122222111 121          22345


Q ss_pred             CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhh-----CCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-----~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      .-|++|..||......   .+   -.+.+..|+.-...+++.+..+     ...+.+++++.-....            +
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~------------~  146 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------------G  146 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS------------C
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc------------c
Confidence            7899999999754321   12   2344566766666666655432     1345666664433221            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       147 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  182 (257)
T d2rhca1         147 VVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAVC  182 (257)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            22222344443334457788888875  5567655554

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.66  E-value=0.0012  Score=57.75  Aligned_cols=153  Identities=16%  Similarity=0.177  Sum_probs=89.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc----------HHhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d----------~~~al  112 (358)
                      .+.+.|+||++.+|..++..|+..|.  +|++.|+++  ++....++...     ...+. .-+|          ..+.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-----ARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCc-----ceEEEeecCCHHHHHHHHHHHHHHh
Confidence            45788899999999999999999998  999999976  23333344321     11110 0111          12234


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      ..-|++|..||.....   ..+.   .+.+..|+    .+.+...+.+.+. +.+.||+++......            +
T Consensus        79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~------------~  145 (244)
T d1nffa_          79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGLA------------G  145 (244)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------C
T ss_pred             CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEecccccccc------------c
Confidence            6789999999864321   1222   22344454    3445555566554 467788877654322            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       146 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  181 (244)
T d1nffa_         146 TVACHGYTATKFAVRGLTKSTALELG--PSGIRVNSIH  181 (244)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhc--ccCEEEEEEe
Confidence            22222344443334457788888874  5566555444

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.017  Score=50.37  Aligned_cols=156  Identities=15%  Similarity=0.153  Sum_probs=91.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH----------Hhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al  112 (358)
                      .+.+.|+||++.+|.+++..|+..|.  .|++.|+++  ++..+.++....  ..+..+.. -+|.          .+.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45889999999999999999999997  999999876  333344454432  12222111 1221          2234


Q ss_pred             CCCCEEEEcCCCCCCC--CCCHH---hHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          113 TGMDIVIIPAGVPRKP--GMTRD---DLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      ..-|++|..+|.....  ..+..   ..+..|+    .+.+.+++.+.+.. .+.+|+++.-....            +.
T Consensus        87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~~------------~~  153 (255)
T d1fmca_          87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAEN------------KN  153 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC------------CC
T ss_pred             CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchhc------------cc
Confidence            6899999999865321  22322   2334443    45566667776654 45666665432211            22


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      |..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       154 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  188 (255)
T d1fmca_         154 INMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGIA  188 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHhC--ccCeEEEEee
Confidence            2222344444334557788888874  5667665554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.64  E-value=0.0027  Score=53.51  Aligned_cols=94  Identities=18%  Similarity=0.150  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .+..+|+|+|. |.||+.++..+..-+.  ++..+|..............     .    ...++++.++.||+|++..-
T Consensus        45 l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~~-----~----~~~~l~~ll~~sD~v~l~~p  112 (191)
T d1gdha1          45 LDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQA-----T----FHDSLDSLLSVSQFFSLNAP  112 (191)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHTC-----E----ECSSHHHHHHHCSEEEECCC
T ss_pred             ecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhcccc-----c----ccCCHHHHHhhCCeEEecCC
Confidence            34569999998 9999999998886666  99999986522221111111     1    12467899999999999743


Q ss_pred             C-CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          124 V-PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       124 ~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                      . +...++-       |.       +.+....|++++||++
T Consensus       113 lt~~T~~li-------~~-------~~l~~mk~~a~lIN~s  139 (191)
T d1gdha1         113 STPETRYFF-------NK-------ATIKSLPQGAIVVNTA  139 (191)
T ss_dssp             CCTTTTTCB-------SH-------HHHTTSCTTEEEEECS
T ss_pred             CCchHhhee-------cH-------HHhhCcCCccEEEecC
Confidence            2 2222221       11       1223344789999986

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.001  Score=58.26  Aligned_cols=157  Identities=15%  Similarity=0.125  Sum_probs=90.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-----CcHHhhhCCCCEEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDIVII  120 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~al~~aDiVIi  120 (358)
                      ...+.|+||++.+|.+++..|+..|.  +|++.|+++.  ...++.+.. .........+     ....+.+..-|++|.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~--~l~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~id~lVn   80 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINES--KLQELEKYP-GIQTRVLDVTKKKQIDQFANEVERLDVLFN   80 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHH--HHGGGGGST-TEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHH--HHHHHHhcc-CCceeeeeccccccccccccccccceeEEe
Confidence            34688889999999999999999997  9999998751  111222211 1111111000     112234568999999


Q ss_pred             cCCCCCCCC---CCHH---hHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          121 PAGVPRKPG---MTRD---DLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       121 ~ag~~~~~g---~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      .+|......   .+..   ..+.-|    ....+.+.+.+.+. +.+.+++++......           .+++..-.++
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~~-----------~~~~~~~~Y~  148 (245)
T d2ag5a1          81 VAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSV-----------KGVVNRCVYS  148 (245)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT-----------BCCTTBHHHH
T ss_pred             cccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhcc-----------CCccchhHHH
Confidence            998754321   2222   223334    34555566666544 567777776554322           1233333344


Q ss_pred             eeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      .+.-.-..+-+.+|..++  ++.|++-.+-.
T Consensus       149 ~sKaal~~l~r~lA~e~~--~~gIrvN~I~P  177 (245)
T d2ag5a1         149 TTKAAVIGLTKSVAADFI--QQGIRCNCVCP  177 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hhCcEEEEEee
Confidence            543334567888898885  56676655543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.023  Score=49.23  Aligned_cols=118  Identities=20%  Similarity=0.245  Sum_probs=74.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcHH----------hhhC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQLE----------DALT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~al~  113 (358)
                      .-+.|+||++.+|..++..|++.|.  .|++.|++.  ++..+.++....  .++..+. .-+|.+          +.+.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            3678889999999999999999998  999999986  334445554322  2222221 112321          2356


Q ss_pred             CCCEEEEcCCCCCCCC--CCH----HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCcc
Q 018265          114 GMDIVIIPAGVPRKPG--MTR----DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g--~~r----~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  169 (358)
                      .-|++|..+|......  ...    .+.+..|    .-..+.+.+.+.+. ..+.|++++......
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~~~  148 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAGHV  148 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-CC
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchhcC
Confidence            7999999998754322  111    2233333    45666777777665 467888887666544

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.59  E-value=0.0021  Score=52.56  Aligned_cols=107  Identities=18%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +.+..||+|||+ |.+|..++..|...+. .++.++++...++  .++.... .....   .-.++.+++.++|+||.+.
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~ka--~~l~~~~-~~~~~---~~~~~~~~l~~~Divi~at   92 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYERA--VELARDL-GGEAV---RFDELVDHLARSDVVVSAT   92 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHHH--HHHHHHH-TCEEC---CGGGHHHHHHTCSEEEECC
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHHH--HHHHHhh-hcccc---cchhHHHHhccCCEEEEec
Confidence            345569999998 9999999999988764 4789998764222  2222110 11111   1257788999999999987


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhh--CCCeEEEEecCCCCcc
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVNST  169 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~  169 (358)
                      +.+..- .++        +.++   ..+++-  ....+++=.+.|-|+-
T Consensus        93 ss~~~i-i~~--------~~i~---~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          93 AAPHPV-IHV--------DDVR---EALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             SSSSCC-BCH--------HHHH---HHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             CCCCcc-ccH--------hhhH---HHHHhcccCCCeEEEeecCCCCcC
Confidence            654211 111        1122   222222  2234677789998776

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.59  E-value=0.00062  Score=59.05  Aligned_cols=159  Identities=14%  Similarity=0.042  Sum_probs=82.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEE-eCCCcHHhhh--CCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGF-LGQQQLEDAL--TGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~-~~t~d~~~al--~~aDiVIi~a  122 (358)
                      -||.|+||+|.+|..++..|++.|.  +|+++|+++.. ....-...... ...... .......+.+  ..-|++|..|
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~iD~linnA   79 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNK-NWTEQEQSILEQTASSLQGSQVDGVFCVA   79 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTS-CHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCchhcccccceecccc-CchhHHHHHHHHHHHHhcCCCeeEEEECC
Confidence            3899999999999999999999997  89999987511 00000000000 000000 0000111222  3469999999


Q ss_pred             CCCCC--C-CCC---HH-hHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeec
Q 018265          123 GVPRK--P-GMT---RD-DLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (358)
Q Consensus       123 g~~~~--~-g~~---r~-~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~l  194 (358)
                      |....  + .+.   .. ..+..|+.-...+++....+- +.+.|++++......            +.|..-.|+.+.-
T Consensus        80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~------------~~~~~~~Y~asKa  147 (235)
T d1ooea_          80 GGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG------------PTPSMIGYGMAKA  147 (235)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCTTBHHHHHHHH
T ss_pred             cccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC------------CcccccchHHHHH
Confidence            85321  1 111   12 235556554444444444332 356777765433111            2332223444443


Q ss_pred             cHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          195 DVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       195 ds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ....|.+.+|..++-.+..|++..+.
T Consensus       148 al~~l~~~la~e~~~~~~~i~v~~i~  173 (235)
T d1ooea_         148 AVHHLTSSLAAKDSGLPDNSAVLTIM  173 (235)
T ss_dssp             HHHHHHHHHHSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEEe
Confidence            44556777777775445566655443

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.58  E-value=0.0011  Score=55.24  Aligned_cols=72  Identities=18%  Similarity=0.264  Sum_probs=45.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHH-HHh-cCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DIS-HMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~-dl~-~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |+||+|+||+|.+|.-+...|...+.+ ||..+=.+...|... +.. +......+.    ..+.++..+++|+|+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~   74 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTAL   74 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccccc----ccCHhHhccccceEEEcc
Confidence            579999999999999999999887654 666654433333222 221 111111222    235556667999999875

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.58  E-value=0.014  Score=50.82  Aligned_cols=159  Identities=13%  Similarity=0.120  Sum_probs=87.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---H-------Hhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---L-------EDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~a  111 (358)
                      +.+.+.|+||++.+|.+++..|+..|.  .|++.|++.  ....+.++.+.. ...+..+.. -+|   .       .+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456889999999999999999999998  999999876  223333443221 112222111 011   1       122


Q ss_pred             hCCCCEEEEcCCCCCCCC---CCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          112 LTGMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      +..-|++|..||......   .+.   ...+..|+    .+.+..++.+++. ..+.+|+++.-....           .
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~i~S~~~~~-----------~  148 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIGSLTVEE-----------V  148 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEECCGGGTC-----------C
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-ccccccccccchhcc-----------c
Confidence            457999999999754321   122   22344454    4555666666544 345666654311100           0


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.+..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       149 ~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I~  185 (251)
T d1vl8a_         149 TMPNISAYAASKGGVASLTKALAKEWG--RYGIRVNVIA  185 (251)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             cCccccchHHHHHhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            111112234433333456777888774  5566655554

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.57  E-value=0.0065  Score=53.18  Aligned_cols=81  Identities=14%  Similarity=0.067  Sum_probs=52.8

Q ss_pred             CCCCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCC---------CcHHh
Q 018265           43 GSPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ---------QQLED  110 (358)
Q Consensus        43 ~~~~~KI~IiGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t---------~d~~~  110 (358)
                      ..+.+++.|+||+|  .||.++|..|+..|.  +|++.|+++ +...+.++........+.....+         ....+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH
Confidence            34667899999877  599999999999998  999999987 33344444332211111111111         12234


Q ss_pred             hhCCCCEEEEcCCCC
Q 018265          111 ALTGMDIVIIPAGVP  125 (358)
Q Consensus       111 al~~aDiVIi~ag~~  125 (358)
                      .+-..|++|..+|..
T Consensus        80 ~~g~id~lV~nag~~   94 (274)
T d2pd4a1          80 DLGSLDFIVHSVAFA   94 (274)
T ss_dssp             HTSCEEEEEECCCCC
T ss_pred             HcCCCCeEEeecccc
Confidence            457889999988864

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.56  E-value=0.012  Score=51.32  Aligned_cols=157  Identities=15%  Similarity=0.087  Sum_probs=90.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC----CCcH-------Hhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG----QQQL-------EDA  111 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~----t~d~-------~~a  111 (358)
                      .+.+.|+||++.+|.+++..|+..|.  .|++.|+++   ++....++.... ...+..+..    ..+.       .+.
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            34678889999999999999999998  999999875   222222332110 111111110    0111       222


Q ss_pred             hCCCCEEEEcCCCCCCCC---CC---HHhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      +-.-|++|..||......   .+   -...+..|    ....+...+.+++.. .+.||+++......            
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~------------  147 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLV------------  147 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------
T ss_pred             hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeeccccccee------------
Confidence            357899999999754221   12   12234444    455566677776653 57778776544322            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       148 ~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  184 (260)
T d1x1ta1         148 ASANKSAYVAAKHGVVGFTKVTALETA--GQGITANAIC  184 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             ccCCcchhhhhhhhHHHhHHHHHHHhc--hhCcEEEEEe
Confidence            222222344443334457788888885  5667655544

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.55  E-value=0.0062  Score=51.26  Aligned_cols=94  Identities=20%  Similarity=0.289  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ....+|+|||. |.||+.++..+..-|.  ++..+|.........+..       +..   ..++++.++.||+|++...
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~~---~~~l~~ll~~sD~i~~~~p  113 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCG  113 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             eeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------ccc---ccchhhccccCCEEEEeec
Confidence            44569999998 9999999999987676  999999764222211111       111   2468899999999999753


Q ss_pred             C-CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          124 V-PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       124 ~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      . +...++-       |.       +.+....|++++||++=
T Consensus       114 lt~~T~~li-------~~-------~~l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         114 LNEHNHHLI-------ND-------FTVKQMRQGAFLVNTAR  141 (193)
T ss_dssp             CCTTCTTSB-------SH-------HHHTTSCTTEEEEECSC
T ss_pred             ccccchhhh-------hH-------HHHhccCCCCeEEecCC
Confidence            2 2222221       11       12333447899999873

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.54  E-value=0.00074  Score=58.63  Aligned_cols=160  Identities=14%  Similarity=0.063  Sum_probs=84.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCC-C-eEEEEeCCCcHHhhhC--CCCEEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTN-A-VVRGFLGQQQLEDALT--GMDIVII  120 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~-~-~v~~~~~t~d~~~al~--~aDiVIi  120 (358)
                      .++|.|+||+|.+|..++..|++.|.  .|+++|.++.. ....-..+.... . .....  .....+.+.  .-|++|+
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCCceEEEE
Confidence            35899999999999999999999998  89999986511 000000000000 0 00000  001112222  3699999


Q ss_pred             cCCCCC--CC-CCC----HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee
Q 018265          121 PAGVPR--KP-GMT----RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (358)
Q Consensus       121 ~ag~~~--~~-g~~----r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t  192 (358)
                      .||...  .+ ...    -...+..|+.....+++.+..+- ..+.|++++.-....            +.|..-.|+.+
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------~~~~~~~Y~as  145 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD------------GTPGMIGYGMA  145 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCTTBHHHHHH
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC------------CccCCcccHHH
Confidence            988422  11 111    12234556555555555444432 457777775432211            23322234444


Q ss_pred             eccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          193 MLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      .-.-..|.+.+|..++-.+..|++..+..
T Consensus       146 Kaal~~lt~~la~El~~~~~gI~vn~v~P  174 (236)
T d1dhra_         146 KGAVHQLCQSLAGKNSGMPSGAAAIAVLP  174 (236)
T ss_dssp             HHHHHHHHHHHTSTTSSCCTTCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccCCCcEEEEEEEe
Confidence            33334566777766654456777666653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.54  E-value=0.013  Score=51.46  Aligned_cols=158  Identities=15%  Similarity=0.136  Sum_probs=89.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCC-Cc---H-------Hhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQ-QQ---L-------EDA  111 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t-~d---~-------~~a  111 (358)
                      .+.+.|+||++.+|..++..|+..|.  .|++.|+++  ++....++..... ...+..+... +|   .       .+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34788999999999999999999998  999999986  3344455554321 1233332211 12   1       122


Q ss_pred             hCCCCEEEEcCCCCCCC--C-----CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHH
Q 018265          112 LTGMDIVIIPAGVPRKP--G-----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~--g-----~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                      +-.-|++|..+|.....  .     ++   -...+..|+.    ..+...+.+++. ..++|++.|......        
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~Ss~a~~~--------  153 (272)
T d1xkqa_          83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQ--------  153 (272)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCGGGSSS--------
T ss_pred             hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccchhcccc--------
Confidence            35789999999875321  1     11   1223344543    555666666543 345555543222111        


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                          +.|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       154 ----~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  190 (272)
T d1xkqa_         154 ----AQPDFLYYAIAKAALDQYTRSTAIDLA--KFGIRVNSVS  190 (272)
T ss_dssp             ----CCCSSHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEEE
T ss_pred             ----CCCCcchhhhHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence                222222344443334457788888875  5667655554

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.53  E-value=0.015  Score=50.88  Aligned_cols=157  Identities=14%  Similarity=0.075  Sum_probs=86.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH----------Hhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a  111 (358)
                      +.+.+.|+||++.+|..++..|+..|.  .|++.|+++  +...+.++....  ..+..+.. -+|.          .+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHH
Confidence            556899999999999999999999998  999999886  333344444322  12222111 1111          122


Q ss_pred             hCC-CCEEEEcCCCCCCC---CCCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 LTG-MDIVIIPAGVPRKP---GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 l~~-aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      +.+ -|++|..+|.....   ..+.   ...+..|+    .+.+...+.+++.. .+.||+++.-....           
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~-----------  150 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV-----------  150 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-----------------
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccccccccc-----------
Confidence            223 79999999864321   2222   22344444    44555566665543 56677766443222           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       151 -~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~V~  187 (259)
T d1xq1a_         151 -SASVGSIYSATKGALNQLARNLACEWA--SDGIRANAVA  187 (259)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -cccccccccccccchhhhhHHHHHHhc--ccCeEEEEec
Confidence             122223344544344557788888874  5667665554

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.52  E-value=0.0014  Score=54.89  Aligned_cols=76  Identities=16%  Similarity=0.224  Sum_probs=46.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-HHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++++||+|+||+|.+|.-+...|...+.+ ||..+-.+...|.. .+.............  ....++.++++|+|+.+.
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dvvf~al   79 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNL--VAVKDADFSNVDAVFCCL   79 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCC--BCGGGCCGGGCSEEEECC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccc--hhhhhhhhcccceeeecc
Confidence            46789999999999999999999887654 77777554422221 111111000111111  111235578999999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.015  Score=50.54  Aligned_cols=116  Identities=19%  Similarity=0.113  Sum_probs=71.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH---H-------hhhC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---E-------DALT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~-------~al~  113 (358)
                      +.+.|+||++-+|.+++..|+..|.  .|++.|++.  ......++........+..+.. -+|.   +       +.+-
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4788899999999999999999997  999999986  2333444543321122322211 1222   1       2235


Q ss_pred             CCCEEEEcCCCCCCCCCCHHhHHHHHH----HHHHHHHHHHHhhC--CCeEEEEecCCC
Q 018265          114 GMDIVIIPAGVPRKPGMTRDDLFNINA----GIVKTLCEGIAKCC--PKAIVNLISNPV  166 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~~~~~~N~----~i~~~i~~~i~~~~--p~a~viv~tNP~  166 (358)
                      .-|++|..||.....  +-.+.+..|+    ...+..++.+.+..  ..+.|++++...
T Consensus        82 ~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~  138 (254)
T d2gdza1          82 RLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  138 (254)
T ss_dssp             CCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence            789999999875432  2333444444    45566666665543  347788876543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0018  Score=56.56  Aligned_cols=155  Identities=17%  Similarity=0.225  Sum_probs=90.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCc----------HHhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d----------~~~a  111 (358)
                      +.+.+.|+||++.+|.+++..|+..|.  .|++.|+++  ++..+.++...     ...+. .-+|          ..+.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~   75 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGAN-----GKGLMLNVTDPASIESVLEKIRAE   75 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCC-----CcEEEEEecCHHHhhhhhhhhhcc
Confidence            345778889999999999999999998  999999876  23333333211     11110 0011          1223


Q ss_pred             hCCCCEEEEcCCCCCCCC---CC---HHhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      +-.-|++|..||......   .+   -...+..|+    ...+.+.+.+.+. ..+.||+++.....          .  
T Consensus        76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~~----------~--  142 (243)
T d1q7ba_          76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK-RHGRIITIGSVVGT----------M--  142 (243)
T ss_dssp             TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH----------H--
T ss_pred             cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc-CCCEeeeecchhhc----------C--
Confidence            457999999998654321   12   122344444    4556666666654 35778887643211          1  


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      +.|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       143 ~~~~~~~Y~asKaal~~lt~~lA~ela--~~gIrVN~I~P  180 (243)
T d1q7ba_         143 GNGGQANYAAAKAGLIGFSKSLAREVA--SRGITVNVVAP  180 (243)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEEec
Confidence            233333455554444567788888884  56666555543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.49  E-value=0.0063  Score=53.51  Aligned_cols=157  Identities=19%  Similarity=0.201  Sum_probs=89.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HH-------hh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LE-------DA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a  111 (358)
                      +.+.+.|+||++-+|..++..|+..|.  +|++.|+++  ++..+.++....   .+..+.. -+|   .+       +.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345788999999999999999999997  999999876  333344454321   1221111 112   22       22


Q ss_pred             hCCCCEEEEcCCCCCC-C----CCCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          112 LTGMDIVIIPAGVPRK-P----GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~-~----g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      +..-|++|..+|.... +    ..+.   ...+..|+    -..+...+.+.+. ..+.+++++.-....          
T Consensus        80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~ii~iss~~~~~----------  148 (268)
T d2bgka1          80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA-KKGSIVFTASISSFT----------  148 (268)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-TCEEEEEECCGGGTC----------
T ss_pred             cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc-CCCCccccccccccc----------
Confidence            3578999999986432 1    1221   22344454    4555566666554 356666665443222          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       .+.+..-.++.+.-....|-+.+|..++  +..|++-.+.
T Consensus       149 -~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  186 (268)
T d2bgka1         149 -AGEGVSHVYTATKHAVLGLTTSLCTELG--EYGIRVNCVS  186 (268)
T ss_dssp             -CCTTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             -cccccccccchhHHHHHhCHHHHHHHhC--hhCeEEEecC
Confidence             1111112344444344567788888875  5566655554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0027  Score=46.85  Aligned_cols=73  Identities=16%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      +..||+|+|. |-.|.+++..|...+.  ++.++|.+.......++.+   ...+..  +..+ ++.+.+.|+||++.|+
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~d~vi~SPGi   74 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE---AVERHT--GSLN-DEWLMAADLIVASPGI   74 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT---TSCEEE--SBCC-HHHHHHCSEEEECTTS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh---ccceee--cccc-hhhhccCCEEEECCCC
Confidence            3458999999 9999999999999987  8899998652111112221   112221  2222 4668899999999988


Q ss_pred             CC
Q 018265          125 PR  126 (358)
Q Consensus       125 ~~  126 (358)
                      |.
T Consensus        75 ~~   76 (93)
T d2jfga1          75 AL   76 (93)
T ss_dssp             CT
T ss_pred             CC
Confidence            74

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.49  E-value=0.01  Score=51.76  Aligned_cols=155  Identities=19%  Similarity=0.212  Sum_probs=91.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH----------HhhhC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDALT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  113 (358)
                      +.+.|+||++.+|..++..|+..|.  .|+++|+++  +...+.++....  ..+..+.. -+|.          .+.+.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            3566779999999999999999987  999999876  333445555432  22222211 1221          12336


Q ss_pred             CCCEEEEcCCCCCCCC---CC---HHhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      .-|++|..+|......   .+   -...+..|+    ...+...+.+.+. ..+.||+++.-....            +.
T Consensus        87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~~------------~~  153 (251)
T d2c07a1          87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSIVGLT------------GN  153 (251)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHH------------CC
T ss_pred             CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC-CCeEEEEECCHHhcC------------CC
Confidence            8999999988654321   22   222334443    4455666666655 457788876533111            23


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      |..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       154 ~~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN~V~  188 (251)
T d2c07a1         154 VGQANYSSSKAGVIGFTKSLAKELA--SRNITVNAIA  188 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEEc
Confidence            3333455544444557788888874  5566655554

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.47  E-value=0.024  Score=49.12  Aligned_cols=157  Identities=18%  Similarity=0.175  Sum_probs=89.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCcH----------HhhhC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL----------EDALT  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  113 (358)
                      +...+.|+||++.+|..++..|+..|.  .|++.|+++.+.....+....  .++..+.. -+|.          .+.+-
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            345788999999999999999999998  999999977332222233221  12222111 1221          12245


Q ss_pred             CCCEEEEcCCCCCCCC---CCH---HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~  183 (358)
                      .-|++|..||......   .+.   ...+..|    ....+.+.+.+++.. .+.||+++.-....            +.
T Consensus        80 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~------------~~  146 (247)
T d2ew8a1          80 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWL------------KI  146 (247)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGS------------CC
T ss_pred             CCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccccchhcc------------cC
Confidence            7999999998753221   121   2234444    345566666666653 57777776433221            22


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       184 p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      |..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       147 ~~~~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~  181 (247)
T d2ew8a1         147 EAYTHYISTKAANIGFTRALASDLG--KDGITVNAIA  181 (247)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccccchhhhccHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            2222344433333456788888874  5566665554

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.44  E-value=0.0013  Score=52.95  Aligned_cols=71  Identities=21%  Similarity=0.315  Sum_probs=46.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      +|||+|+||+|.+|.-+...|.+.+ ...+|.++-.....|...  ..  ....+....  .+ .+.+.++|+++++.+
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i--~~--~~~~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM--GF--AESSLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE--EE--TTEEEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce--ee--ccccchhcc--ch-hhhhccceEEEecCC
Confidence            5899999999999999999887543 345888886654333221  11  122333221  22 355789999998853

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.44  E-value=0.017  Score=50.49  Aligned_cols=157  Identities=14%  Similarity=0.083  Sum_probs=89.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---HH-------hh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LE-------DA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a  111 (358)
                      +.+.+.|+||++.+|..++..|+..|.  .|++.|+++  ++....++....  ..+..+.. -+|   .+       +.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   82 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999997  899999976  333344444322  22222111 112   11       12


Q ss_pred             hC-CCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 LT-GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 l~-~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      +. .-|++|..+|......   .+   -...+..|+.    +.+...+.+.+ ...+.||+++.-....           
T Consensus        83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~G~Ii~isS~~~~~-----------  150 (259)
T d2ae2a_          83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA-SERGNVVFISSVSGAL-----------  150 (259)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TSSEEEEEECCGGGTS-----------
T ss_pred             hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhh-hccccccccccccccc-----------
Confidence            23 3799999998754322   22   2234455544    34445555544 3567777776543222           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.|..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       151 -~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  187 (259)
T d2ae2a_         151 -AVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGVG  187 (259)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             -ccccccchHHHHHHHHHHHHHHHHHhC--cCceEEEEee
Confidence             222222333333333457788888874  5566555444

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.44  E-value=0.019  Score=50.55  Aligned_cols=158  Identities=17%  Similarity=0.191  Sum_probs=88.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCC-Cc---HHh-------h
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQ-QQ---LED-------A  111 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t-~d---~~~-------a  111 (358)
                      ...+.|+||++.+|.+++..|+..|.  .|++.|+++  ++..+.++...... ..+..+... +|   .++       .
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999998  999999986  33444455443211 233332111 12   111       2


Q ss_pred             hCCCCEEEEcCCCCCCCC-----CCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          112 LTGMDIVIIPAGVPRKPG-----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g-----~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      +-.-|++|..+|.....+     ++.   ...+..|+.    ..+...+.+.+ ...+.+++.+.-....          
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~ss~~~~~----------  150 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSSIVAGPQ----------  150 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECCGGGSSS----------
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchhhhhccc----------
Confidence            346899999988643221     122   122344543    55556666654 3456666654221111          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                        +.|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       151 --~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~  187 (274)
T d1xhla_         151 --AHSGYPYYACAKAALDQYTRCTAIDLI--QHGVRVNSVS  187 (274)
T ss_dssp             --CCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             --cCCCCceehhhhhHHHHHHHHHHHHHh--HhCCceeeec
Confidence              122222233333333456788888874  5667655554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.41  E-value=0.025  Score=49.86  Aligned_cols=159  Identities=13%  Similarity=0.028  Sum_probs=87.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCcH----------Hhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL----------EDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~a  111 (358)
                      +...+.|+||+|.+|.+++..|+..|.  +|++.|++.  ....+.++.... ...+..+. .-+|.          .+.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhh
Confidence            345789999999999999999999997  999999986  233344443221 11111111 11222          223


Q ss_pred             hCCCCEEEEcCCCCCCCC---CC---HHhHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      +...|++|..+|......   .+   ....+..|...    ....+...........+++.+......            
T Consensus       101 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~------------  168 (294)
T d1w6ua_         101 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------  168 (294)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH------------
T ss_pred             ccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh------------
Confidence            467899999988654322   11   22223333322    344444444444555555544332111            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..|..-.|+.+.-.-..+-+.+|..++  +..|++-.+-
T Consensus       169 ~~~~~~~YsasKaal~~ltk~lA~ela--~~gIrVN~I~  205 (294)
T d1w6ua_         169 GSGFVVPSASAKAGVEAMSKSLAAEWG--KYGMRFNVIQ  205 (294)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHh--HhCeEEEEEc
Confidence            122222244443334457788888885  5666655554

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.013  Score=50.56  Aligned_cols=161  Identities=14%  Similarity=0.151  Sum_probs=90.7

Q ss_pred             CCCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCc----------HHh
Q 018265           44 SPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQ----------LED  110 (358)
Q Consensus        44 ~~~~KI~IiGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d----------~~~  110 (358)
                      -+.++|.|+||+|  -+|+++|..|++.|.  +|++.|+++ ....+.++............ ...+          ..+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQC-DVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeec-ccchHHHHHHHHHHhhh
Confidence            4567899999976  589999999999998  999999986 33333333322111111111 1111          122


Q ss_pred             hhCCCCEEEEcCCCCCCCCC-------C----HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHH
Q 018265          111 ALTGMDIVIIPAGVPRKPGM-------T----RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~-------~----r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                      .+...|++|..++.......       .    -.....-|......+.+.+..+- +...++++|......         
T Consensus        80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~---------  150 (258)
T d1qsga_          80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---------  150 (258)
T ss_dssp             TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS---------
T ss_pred             cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc---------
Confidence            23556788887765321110       0    11223455566666666665554 344555555443211         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                         +.|..-.++.+.-.-..+.+.+|..++  ++.|++-.+-.
T Consensus       151 ---~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~P  188 (258)
T d1qsga_         151 ---AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAISA  188 (258)
T ss_dssp             ---BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEEE
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeecccc
Confidence               233333455544444567899999996  66777666653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0075  Score=52.99  Aligned_cols=158  Identities=13%  Similarity=0.140  Sum_probs=85.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC-Cc----------HHhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-QQ----------LEDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d----------~~~a  111 (358)
                      +..++.|+||++.+|.++|..|+..|.  .|++.|+++  ++....++.... ...+...... .+          ..+.
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~   89 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKL   89 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            446899999999999999999999997  999999986  233333333221 1122221111 11          1223


Q ss_pred             hCCCCEEEEcCCCCCCC---CCCH---HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      +...|++++.+|.....   ..+.   ...+..|    ..+.+.+.+.+++.  ++.+++++......            
T Consensus        90 ~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS~~~~~------------  155 (269)
T d1xu9a_          90 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSLAGKV------------  155 (269)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEGGGTS------------
T ss_pred             hCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEeccchhcC------------
Confidence            45789999988753221   1121   1223444    34556666666543  46666665433221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      ++|..-.++.+.-.-..|-+.|+..++..-..|++..+
T Consensus       156 ~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v  193 (269)
T d1xu9a_         156 AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLC  193 (269)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEE
Confidence            23333344444333344666677665432234554433

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.36  E-value=0.011  Score=44.78  Aligned_cols=70  Identities=14%  Similarity=0.137  Sum_probs=47.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ..||+|+|+ |.+|...+..|+..|-  .+.+++....... ..+.+..   .++......+ ++.+.++++|+.+.+
T Consensus        12 ~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~-~~~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at~   81 (113)
T d1pjqa1          12 DRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQF-TVWANEG---MLTLVEGPFD-ETLLDSCWLAIAATD   81 (113)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHH-HHHHTTT---SCEEEESSCC-GGGGTTCSEEEECCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHH-HHHHhcC---CceeeccCCC-HHHhCCCcEEeecCC
Confidence            459999998 9999999999999886  8899987653322 2233321   2222222222 466899999998743

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0034  Score=54.93  Aligned_cols=155  Identities=18%  Similarity=0.118  Sum_probs=89.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCc-------HHhhhCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQ-------LEDALTGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d-------~~~al~~a  115 (358)
                      .+.+.|+||++.+|.+++..|+..|.  +|++.|+++  ++....++..... ..++.   ...+       ..+.+-.-
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs---~~~~v~~~~~~~~~~~g~i   80 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAVFILCDVT---QEDDVKTLVSETIRRFGRL   80 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEEEEECCTT---SHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEEEccCC---CHHHHHHHHHHHHHhcCCC
Confidence            34789999999999999999999998  999999876  2222222221100 00000   0011       22334578


Q ss_pred             CEEEEcCCCCCCCC----CCH---HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          116 DIVIIPAGVPRKPG----MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       116 DiVIi~ag~~~~~g----~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      |++|..||.....+    .+.   ...+..|    ..+.+...+.+++.  .+.||+++......            +.|
T Consensus        81 DilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~~~------------~~~  146 (250)
T d1ydea1          81 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVGAI------------GQA  146 (250)
T ss_dssp             CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHHHH------------CCT
T ss_pred             CEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccccccccc------------ccc
Confidence            99999998643222    122   2223444    45566677777654  46777766433111            233


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      ..-.++.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       147 ~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I~P  181 (250)
T d1ydea1         147 QAVPYVATKGAVTAMTKALALDES--PYGVRVNCISP  181 (250)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEEE
T ss_pred             CcchhHHHHhhHHHHHHHHHHHhc--ccCeEEEEEee
Confidence            333445544334457788888884  56676655553

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.31  E-value=0.0049  Score=53.80  Aligned_cols=158  Identities=16%  Similarity=0.136  Sum_probs=89.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEe----CCCcHHhhhCCCCEEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVII  120 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiVIi  120 (358)
                      .+.+.|+||++.+|.+++..|+..|.  .|++.|+++. .....++.......++....    .-....+.+-.-|++|.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            45789999999999999999999998  9999999862 22222221100001111000    00112334568999999


Q ss_pred             cCCCCCCC---CCCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 018265          121 PAGVPRKP---GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (358)
Q Consensus       121 ~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG  190 (358)
                      .||.....   ..+.   ...+..|+    .+.+...+.+++. ..+.||+++......            +.|..-.++
T Consensus        83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~isS~~~~~------------~~~~~~~Y~  149 (248)
T d2d1ya1          83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASVQGLF------------AEQENAAYN  149 (248)
T ss_dssp             CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCGGGTS------------BCTTBHHHH
T ss_pred             eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-ccccccccccccccc------------cccccchhH
Confidence            99864321   1222   22344454    4555666666554 357788876544322            223222344


Q ss_pred             eeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       150 asKaal~~ltk~lA~el~--~~gIrVN~I~  177 (248)
T d2d1ya1         150 ASKGGLVNLTRSLALDLA--PLRIRVNAVA  177 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            443334457788888885  5566655554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.26  E-value=0.054  Score=47.00  Aligned_cols=154  Identities=18%  Similarity=0.144  Sum_probs=89.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc---H-------Hhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---L-------EDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~a  111 (358)
                      +.+.+.|+||++-+|..++..|+..|.  +|++.|++.  +.....++..     .+..+.. -+|   .       .+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEcccCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999876  2222222221     1111111 011   1       223


Q ss_pred             hCCCCEEEEcCCCCCCCC---CC---HHhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhC
Q 018265          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~  181 (358)
                      +..-|++|..||......   .+   ....+..|+    -..+.+.+.+++. ..+.||+++.-....            
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~II~isS~~~~~------------  143 (254)
T d1hdca_          77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAGLM------------  143 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------
T ss_pred             cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc-CCCeecccccchhcc------------
Confidence            467999999998753221   12   223345554    4555566666554 467788876544222            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       182 ~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      +.|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       144 ~~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I~  180 (254)
T d1hdca_         144 GLALTSSYGASKWGVRGLSKLAAVELG--TDRIRVNSVH  180 (254)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhC--CCceEEEEee
Confidence            222222344443334457788888774  4556555444

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.26  E-value=0.0061  Score=49.93  Aligned_cols=67  Identities=19%  Similarity=0.403  Sum_probs=45.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      |+++||+|+|. |.+|+..+..+...+-+.-+.++|.+...         ........   ..++.+...+.|+|+++..
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~~~~---~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTPVFD---VADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSCEEE---GGGGGGTTTTCSEEEECSC
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc---------cccccccc---chhhhhhccccceEEEeCC
Confidence            57789999998 99999999988876544344566665411         11122222   3466777899999999753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.26  E-value=0.0052  Score=51.23  Aligned_cols=87  Identities=23%  Similarity=0.190  Sum_probs=54.5

Q ss_pred             ccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCC------CeEEE--------
Q 018265           37 DCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTN------AVVRG--------  101 (358)
Q Consensus        37 ~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~------~~v~~--------  101 (358)
                      .-...++.++-||+|||| |.+|.+-+...+.-|-  .+..+|++. ......++......      .....        
T Consensus        20 l~~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~   96 (183)
T d1l7da1          20 MMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEM   96 (183)
T ss_dssp             EEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC------------------
T ss_pred             cccccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhc
Confidence            344556777889999999 9999998887776665  999999987 33333322110000      00000        


Q ss_pred             ---E--eCCCcHHhhhCCCCEEEEcCCCCC
Q 018265          102 ---F--LGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus       102 ---~--~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                         +  .....+.+.+++||+||.++-.|-
T Consensus        97 s~~~~~~~~~~l~~~l~~aDlVI~talipG  126 (183)
T d1l7da1          97 GEEFRKKQAEAVLKELVKTDIAITTALIPG  126 (183)
T ss_dssp             -----CCHHHHHHHHHTTCSEEEECCCCTT
T ss_pred             CHHHHHHHHHHHHHHHHhhhhheeeeecCC
Confidence               0  001234456899999999987764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.25  E-value=0.0014  Score=57.15  Aligned_cols=155  Identities=17%  Similarity=0.199  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-----hHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      +.+++.|+||++.+|..++..|++.|.  .|++.|++...     ....|+.+..   .++..  -....+.+..-|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~--~~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRA--FTAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHH--HHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHH--HHHHHHhcCCceEEE
Confidence            345899999999999999999999998  99999987611     1112222111   01100  012234456899999


Q ss_pred             EcCCCCCCC---CCCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 018265          120 IPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       120 i~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      ..||.....   ..+.   ...+..|+.    +.+.+.+.+.+. ..+.||+++.-....            +.|..-.|
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Iv~isS~~~~~------------~~~~~~~Y  145 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSGLW------------GIGNQANY  145 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC-----------------CCHHH
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-CCCceEEEcchhhcc------------CCcccHHH
Confidence            999874321   1222   223444543    455666666654 456777776544332            11222234


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      +.+.-.-..|-+.+|..++  +..|++..+-.
T Consensus       146 ~asKaal~~lt~~lA~e~~--~~gIrVN~I~P  175 (237)
T d1uzma1         146 AASKAGVIGMARSIARELS--KANVTANVVAP  175 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhhh--cCCceeeeeee
Confidence            4443333457778888874  55666555543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.24  E-value=0.033  Score=48.52  Aligned_cols=158  Identities=13%  Similarity=0.056  Sum_probs=89.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE-eCCCcHH----------h
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF-LGQQQLE----------D  110 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~-~~t~d~~----------~  110 (358)
                      .+..++.|+||++.+|..++..|++.|.  .|++.|+++  +.....++.....  .+..+ ..-+|.+          +
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHH
Confidence            3556899999999999999999999998  999999986  2233334443321  12111 1112221          2


Q ss_pred             hh-CCCCEEEEcCCCCCCCC---CC---HHhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q 018265          111 AL-TGMDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (358)
Q Consensus       111 al-~~aDiVIi~ag~~~~~g---~~---r~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  179 (358)
                      -+ ..-|++|..+|......   .+   ....+..|    ....+.+.+.+.+. +.+.+++++......          
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~isS~~~~~----------  148 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIAGFS----------  148 (258)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGGGTS----------
T ss_pred             HhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-ccccccccccccccc----------
Confidence            22 23788888888654321   12   22233344    34455555666554 466777766554322          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       180 ~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                        +.|..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       149 --~~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I~  185 (258)
T d1ae1a_         149 --ALPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSVA  185 (258)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             --ccccchhHHHHHHHHHHHHHHHHHhcC--cCcEEEEEEe
Confidence              233333344433333457788888886  4556554444

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.23  E-value=0.037  Score=48.04  Aligned_cols=158  Identities=16%  Similarity=0.131  Sum_probs=85.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe--CCCcH----------Hhh
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL--GQQQL----------EDA  111 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~--~t~d~----------~~a  111 (358)
                      +...|.|+||++.+|..+|..|+..|.  .+++++.+. ......++........+..+.  .+.+.          .+.
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  666665433 222222222111112222211  11111          122


Q ss_pred             hCCCCEEEEcCCCCCCCCCCHHhHHHHHH----HHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINA----GIVKTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~----~i~~~i~~~i~~~--~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      +...|++|..||.....  .-...+..|+    ...+.+.+.+.+.  .+.+.||+++.-....            +.|.
T Consensus        82 ~g~iDilvnnAG~~~~~--~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~------------~~~~  147 (254)
T d1sbya1          82 LKTVDILINGAGILDDH--QIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------------AIHQ  147 (254)
T ss_dssp             HSCCCEEEECCCCCCTT--CHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS------------CCTT
T ss_pred             cCCCCEEEeCCCCCCHH--HHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc------------CCCC
Confidence            46789999999965432  2233444554    4667777777553  3567788775433211            1222


Q ss_pred             CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .-.|+.+.-....|-+.+|..+  .+..|++..+-
T Consensus       148 ~~~Y~asKaal~~~t~~la~el--~~~gIrVn~I~  180 (254)
T d1sbya1         148 VPVYSASKAAVVSFTNSLAKLA--PITGVTAYSIN  180 (254)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHH--HHHSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHhhc--cccCeEEEEEE
Confidence            2223333333344666677665  23445544444

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.18  E-value=0.0034  Score=52.35  Aligned_cols=89  Identities=25%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ....+|+|||. |.+|..++..+..-|.  ++..+|....++        ..    .   ...++++.+++||+|++.. 
T Consensus        40 l~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~--------~~----~---~~~~l~ell~~sDiv~~~~-  100 (181)
T d1qp8a1          40 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEG--------PW----R---FTNSLEEALREARAAVCAL-  100 (181)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCS--------SS----C---CBSCSHHHHTTCSEEEECC-
T ss_pred             ccCceEEEecc-ccccccceeeeecccc--cccccccccccc--------ce----e---eeechhhhhhccchhhccc-
Confidence            44569999998 9999999999987776  999999764211        10    0   1135789999999999964 


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                       |..+ +++. ++  |.       +.++...|++++|+++
T Consensus       101 -pl~~-~t~~-li--~~-------~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         101 -PLNK-HTRG-LV--KY-------QHLALMAEDAVFVNVG  128 (181)
T ss_dssp             -CCST-TTTT-CB--CH-------HHHTTSCTTCEEEECS
T ss_pred             -cccc-cccc-cc--cc-------ceeeeccccceEEecc
Confidence             2221 1111 11  11       2333445789999976

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.06  E-value=0.0033  Score=55.10  Aligned_cols=159  Identities=12%  Similarity=0.068  Sum_probs=86.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeC----CCcHHhhhCCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLG----QQQLEDALTGMD  116 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~----t~d~~~al~~aD  116 (358)
                      +.+.+.|+||++.+|..++..|+..|.  .|++.|+++  ++....++.....  ..++.....    -....+.+-.-|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD   82 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            345788889999999999999999998  899999876  2333344432110  011110000    001123346789


Q ss_pred             EEEEcCCCCCCC---CCCH---HhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018265          117 IVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       117 iVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      ++|..||.....   ..+.   ...+..|    .-..+...+.+++.  .+.||+++......            +.|..
T Consensus        83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~G~Iv~isS~~~~~------------~~~~~  148 (253)
T d1hxha_          83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--GGSIINMASVSSWL------------PIEQY  148 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--CEEEEEECCGGGTS------------CCTTB
T ss_pred             eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CCceecccchhhhc------------Ccccc
Confidence            999999875422   1122   2234445    34566666666542  47888876544322            22222


Q ss_pred             cEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      -.|+.+.-.-..|-+.+|..++-.-..|++-.+
T Consensus       149 ~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I  181 (253)
T d1hxha_         149 AGYSASKAAVSALTRAAALSCRKQGYAIRVNSI  181 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHHHHhhcCCCEEEEEE
Confidence            234443333344666677666432233444333

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.06  E-value=0.031  Score=48.58  Aligned_cols=165  Identities=11%  Similarity=0.087  Sum_probs=88.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCcH----------Hhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al  112 (358)
                      .+.+.|+||++.+|..++..|++.|.  .|++.|++.  ......++.... ..++..+.. -+|.          .+.+
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34788999999999999999999997  999999987  222233332211 111222111 1121          2234


Q ss_pred             CCCCEEEEcCCCCCCCC---CCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCC
Q 018265          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~  182 (358)
                      -.-|++|..+|......   .+.   ...+..|+    ...+.+++.+.+....+.+++.+.........     ....+
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~-----~~~~~  160 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ-----SSLNG  160 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCE-----EETTE
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccc-----ccccc
Confidence            57999999988643211   222   22344554    45566677776666666666654332211000     00000


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       183 ~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      .+..-.++.+.-.-..+-+.+|..++  +..|++-.+-
T Consensus       161 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrvN~I~  196 (260)
T d1h5qa_         161 SLTQVFYNSSKAACSNLVKGLAAEWA--SAGIRVNALS  196 (260)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CccccchhhhhhhHHHHHHHHHHHhc--hhCeEEeecC
Confidence            01111223333233456777888775  4556555554

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.03  E-value=0.0052  Score=53.42  Aligned_cols=156  Identities=19%  Similarity=0.140  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcH-------HhhhCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQL-------EDALTGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~-------~~al~~a  115 (358)
                      +..++.|+||++.+|..++..|+..|.  +|++.|+++.  +....++.......++.   ...+.       .+.+..-
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~~g~i   78 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVA---DPASVERGFAEALAHLGRL   78 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTT---CHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecC---CHHHHHHHHHHHHHhcCCc
Confidence            345789999999999999999999998  9999998761  11111111000001110   00111       2334578


Q ss_pred             CEEEEcCCCCCCCC---CCH---HhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          116 DIVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       116 DiVIi~ag~~~~~g---~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      |++|..||......   .+.   ...+..|+.    ..+...+.+.+. ..+.+++.+. ...            .+.|.
T Consensus        79 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~~~i~~~ss-~~~------------~~~~~  144 (242)
T d1ulsa_          79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTAS-RVY------------LGNLG  144 (242)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEECC-GGG------------GCCTT
T ss_pred             eEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc-ccceeeeecc-ccc------------cCCCC
Confidence            99999999754321   222   223445544    444455555443 3455555443 111            12333


Q ss_pred             CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      .-.|+.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       145 ~~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~P  178 (242)
T d1ulsa_         145 QANYAASMAGVVGLTRTLALELG--RWGIRVNTLAP  178 (242)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHHHHHHHh--hhCcEEEEEee
Confidence            33455544334457788888874  55676655543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.061  Score=47.78  Aligned_cols=164  Identities=13%  Similarity=0.075  Sum_probs=94.2

Q ss_pred             CCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC---CCCeEEEEeC-CCcH---H
Q 018265           39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TNAVVRGFLG-QQQL---E  109 (358)
Q Consensus        39 ~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~---~~~~v~~~~~-t~d~---~  109 (358)
                      .+++--+...+.|+||++.+|.+++..|+..|.  .|++.|++.  ++..+.++....   ...++..+.. -+|.   +
T Consensus         5 ~~~g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~   82 (297)
T d1yxma1           5 LAPGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN   82 (297)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred             CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHH
Confidence            355556677899999999999999999999998  999999986  344444554321   1123333211 1221   1


Q ss_pred             -------hhhCCCCEEEEcCCCCCCCC---CC---HHhHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCccHHH
Q 018265          110 -------DALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPI  172 (358)
Q Consensus       110 -------~al~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~  172 (358)
                             +.+..-|++|..||......   .+   -...+..|+.    +.+..++.+.+.. .+.+++++.....    
T Consensus        83 ~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss~~~~----  157 (297)
T d1yxma1          83 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKA----  157 (297)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTT----
T ss_pred             HHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-ccccccccccccc----
Confidence                   22457899999988643221   11   2233455543    4555566655543 4555655543211    


Q ss_pred             HHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          173 AAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       173 ~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                               ++|..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       158 ---------~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  194 (297)
T d1yxma1         158 ---------GFPLAVHSGAARAGVYNLTKSLALEWA--CSGIRINCVA  194 (297)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             ---------cccccccchhHHHHHHHHHHHHHHHhc--ccCceEEEee
Confidence                     122222233333334457788888874  5666655554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.019  Score=47.61  Aligned_cols=94  Identities=26%  Similarity=0.341  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ...++|+|+|. |.+|+.++..+..-+.  ++..+|.........+..       ++.    .++++.++.||+|++..-
T Consensus        42 l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~~----~~l~ell~~sDiv~~~~P  107 (184)
T d1ygya1          42 IFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFISVHLP  107 (184)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEEEECCC
T ss_pred             ccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------cee----ccHHHHHhhCCEEEEcCC
Confidence            34569999998 9999999998876565  999999765333222221       111    357899999999999743


Q ss_pred             C-CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          124 V-PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       124 ~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      . +...++-       |.       +.+....|++++||++--
T Consensus       108 lt~~T~~li-------n~-------~~l~~mk~~a~lIN~sRG  136 (184)
T d1ygya1         108 KTPETAGLI-------DK-------EALAKTKPGVIIVNAARG  136 (184)
T ss_dssp             CSTTTTTCB-------CH-------HHHTTSCTTEEEEECSCT
T ss_pred             CCchhhhhh-------hH-------HHHhhhCCCceEEEecch
Confidence            2 2222221       11       122334479999998743

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.98  E-value=0.031  Score=49.99  Aligned_cols=157  Identities=15%  Similarity=0.194  Sum_probs=89.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----------chhHHHHHhcCCCCCeEEEEeCCCcHH-----
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----------TPGVTADISHMDTNAVVRGFLGQQQLE-----  109 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----------~~g~~~dl~~~~~~~~v~~~~~t~d~~-----  109 (358)
                      ...+.|+||++.+|..++..|+..|.  .|++.|++.           +.....++..... ...-......+.+     
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~v~~   83 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVKT   83 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhccc-ccccccchHHHHHHHHHH
Confidence            34688899999999999999999998  899999764           1112223322211 1111111111222     


Q ss_pred             --hhhCCCCEEEEcCCCCCCCC---CCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHH
Q 018265          110 --DALTGMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       110 --~al~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                        +.+-.-|++|..||......   .+.   ...+..|+    ...+...+.+++.. .+.||+++....          
T Consensus        84 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~----------  152 (302)
T d1gz6a_          84 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASG----------  152 (302)
T ss_dssp             HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH----------
T ss_pred             HHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhh----------
Confidence              23457999999999754321   221   22344454    45666667776653 577888764321          


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       .. +.|..-.|+.+.-.-..|.+.+|..++  +..|++-.+-
T Consensus       153 -~~-~~~~~~~Y~asKaal~~lt~~la~E~~--~~gIrVN~I~  191 (302)
T d1gz6a_         153 -IY-GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCNTIA  191 (302)
T ss_dssp             -HH-CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             -cC-CCCCcHHHHHHHHHHHHHHHHHHHHHh--ccCCceeeeC
Confidence             11 233333445544444567788888874  5566655444

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.97  E-value=0.014  Score=48.21  Aligned_cols=73  Identities=18%  Similarity=0.361  Sum_probs=43.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC---CchhHHH-HHh-cCC--CCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV---NTPGVTA-DIS-HMD--TNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~---~~~g~~~-dl~-~~~--~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      |+||+|+||+|++|.-+...|...+.+ ||.-+-..   ...|... +.. +..  ....+...   .+......++|+|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            579999999999999999999988654 55443221   1122211 111 111  11222322   2334556899999


Q ss_pred             EEcC
Q 018265          119 IIPA  122 (358)
Q Consensus       119 Ii~a  122 (358)
                      +.+.
T Consensus        77 f~al   80 (179)
T d2g17a1          77 FLAT   80 (179)
T ss_dssp             EECS
T ss_pred             eccc
Confidence            9984

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.95  E-value=0.015  Score=48.90  Aligned_cols=63  Identities=22%  Similarity=0.306  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ...+|+|+|. |.||+.++..+..-|.  +|..+|.........   .. .        ...++++.++.||+|++..
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~~-~--------~~~~l~~~l~~sDii~~~~  104 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---KG-Y--------YVDSLDDLYKQADVISLHV  104 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---TT-C--------BCSCHHHHHHHCSEEEECS
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---ce-e--------eeccccccccccccccccC
Confidence            4469999998 9999999999987676  999999764221111   11 1        1135788999999999975

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.93  E-value=0.031  Score=48.17  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=90.5

Q ss_pred             E-EEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc----------H
Q 018265           48 K-VAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------L  108 (358)
Q Consensus        48 K-I~IiGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d----------~  108 (358)
                      + |.|+||++-+|.+++..|+..|.     ...++++|++.  ++....++....  ..+..+.. -+|          .
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            5 46889999999999999998774     13488999876  334445555432  22222211 122          1


Q ss_pred             HhhhCCCCEEEEcCCCCCCCC---CC---HHhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          109 EDALTGMDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g---~~---r~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                      .+.+-.-|++|..||......   .+   -...+..|    ..+.+.+.+.+++. ..+.+|+++.-....         
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~---------  149 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAATK---------  149 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS---------
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEechhhcC---------
Confidence            233457899999998754221   12   12234445    45566677777654 467777776544322         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                         ++|..-.|+.+.-.-..|-+.+|..++  +..|++..+-
T Consensus       150 ---~~~~~~~Y~asK~al~~lt~~la~el~--~~gIrvn~i~  186 (240)
T d2bd0a1         150 ---AFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRITDVQ  186 (240)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHHHhC--cCCeEEEEee
Confidence               233333344444334457777888775  4567655554

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.91  E-value=0.035  Score=48.40  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=86.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCC-Cc---HH-------hhh
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQ-QQ---LE-------DAL  112 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t-~d---~~-------~al  112 (358)
                      +.+.|+||++.+|..++..|+..|.  +|++.|+++  +...+.++..... ...+..+... +|   .+       +.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3567889999999999999999997  999999976  3344455554321 1223332111 11   11       223


Q ss_pred             CCCCEEEEcCCCCCCC-------CCCH---HhHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHH
Q 018265          113 TGMDIVIIPAGVPRKP-------GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~-------g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  178 (358)
                      -.-|++|..+|.....       .++.   ...+..|+    ...+...+.+++. ..++|++.|--....         
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S~~~~~~---------  153 (264)
T d1spxa_          84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISSIASGLH---------  153 (264)
T ss_dssp             SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTTSSSS---------
T ss_pred             CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeeeeccccc---------
Confidence            5789999999864211       1121   22344454    4556666666554 344444433222221         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       179 ~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                         +.|..-.|+.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       154 ---~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V~  190 (264)
T d1spxa_         154 ---ATPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRVNSIS  190 (264)
T ss_dssp             ---CCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             ---cCCCchhhhhhhhhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence               222222344443334457788888874  5667665554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.86  E-value=0.0075  Score=48.97  Aligned_cols=66  Identities=24%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             CCEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcHHhhhC-CCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~-~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~  121 (358)
                      +|||+|||+ |.+|.. ..+.+...+. .+++++|.+..  ...+.++. .   +.     ..+|+++.++ +.|+|+++
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~-~---~~-----~~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYR-V---SA-----TCTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTT-C---CC-----CCSSTTGGGGGCCSEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhcc-c---cc-----ccccHHHhcccccceeccc
Confidence            479999998 999976 4556655443 38889998752  21222221 1   11     1245666554 78999987


Q ss_pred             C
Q 018265          122 A  122 (358)
Q Consensus       122 a  122 (358)
                      .
T Consensus        70 t   70 (167)
T d1xeaa1          70 A   70 (167)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.86  E-value=0.0035  Score=53.08  Aligned_cols=92  Identities=24%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ...++|+|+|. |.||+.++..+..-|.  ++..+|.....+         .......    .++++.++.||+|++..-
T Consensus        43 l~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~---------~~~~~~~----~~l~~l~~~~D~v~~~~p  106 (199)
T d1dxya1          43 LGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG---------DHPDFDY----VSLEDLFKQSDVIDLHVP  106 (199)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS---------CCTTCEE----CCHHHHHHHCSEEEECCC
T ss_pred             ccceeeeeeec-ccccccccccccccce--eeeccCCccchh---------hhcchhH----HHHHHHHHhcccceeeec
Confidence            34569999998 9999999999987676  999999754211         0111222    357888999999999742


Q ss_pred             C-CCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          124 V-PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       124 ~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      . +...++     +  |.       +.+....+++++||++=.
T Consensus       107 lt~~T~~l-----i--~~-------~~l~~mk~~a~lIN~aRG  135 (199)
T d1dxya1         107 GIEQNTHI-----I--NE-------AAFNLMKPGAIVINTARP  135 (199)
T ss_dssp             CCGGGTTS-----B--CH-------HHHHHSCTTEEEEECSCT
T ss_pred             cccccccc-----c--cH-------HHhhccCCceEEEecccH
Confidence            2 111111     1  11       223333478999998743

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0042  Score=50.86  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC--CCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      .++||+|+|++|.+|+.++..+.+.+-+.=+..+|.......-.|+.....  ...+..   +.|+++.++++|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            357999999999999999998887653212245555331111122222211  122222   24667788999987654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.031  Score=44.98  Aligned_cols=66  Identities=14%  Similarity=0.237  Sum_probs=42.7

Q ss_pred             CCEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCchh--HHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~-~a~~l~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++||+|||+ |.+|.. ....+...+-+.-+.++|.+....  ...++. ..         ..+++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-~~---------~~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-IP---------YADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-CC---------BCSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-cc---------ccccchhhhhhcccccccc
Confidence            479999998 999975 566666654444456888876322  222221 11         1245677779999999874

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.0077  Score=49.69  Aligned_cols=71  Identities=13%  Similarity=0.113  Sum_probs=42.7

Q ss_pred             CCCCEEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCEEE
Q 018265           44 SPGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVI  119 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~-~a~~l~~~~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVI  119 (358)
                      |+++||+|||+ |.+|.. .++.+...+...+|+ ++|.+....  ..+.+....+  ..   .+|+++.++  +.|+|+
T Consensus         1 MkkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~--~~~~~~~~~~--~~---~~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           1 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHA--EEFAKMVGNP--AV---FDSYEELLESGLVDAVD   72 (181)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH--HHHHHHHSSC--EE---ESCHHHHHHSSCCSEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh--hhhhcccccc--ce---eeeeeccccccccceee
Confidence            57789999998 999986 466666543322554 788765222  2222110111  22   257778774  588898


Q ss_pred             EcC
Q 018265          120 IPA  122 (358)
Q Consensus       120 i~a  122 (358)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            873

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.77  E-value=0.017  Score=50.00  Aligned_cols=161  Identities=14%  Similarity=0.189  Sum_probs=89.1

Q ss_pred             CCCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCe-EEE-EeCCCcH-------Hhh
Q 018265           44 SPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAV-VRG-FLGQQQL-------EDA  111 (358)
Q Consensus        44 ~~~~KI~IiGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~-v~~-~~~t~d~-------~~a  111 (358)
                      .+.+++.|+||+|  -+|..++..|+..|.  +|++.|+++ ....+.++........ +.. .+...+.       .+.
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA   83 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHh
Confidence            3456899999976  599999999999997  899999876 2223322222111111 111 0000111       223


Q ss_pred             hCCCCEEEEcCCCCCCC-------CCCHH---hHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          112 LTGMDIVIIPAGVPRKP-------GMTRD---DLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       112 l~~aDiVIi~ag~~~~~-------g~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                      +-.-|++|..+|.....       ..+..   ..+..|+.....+++....+- ..+.+++++.-....           
T Consensus        84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~-----------  152 (256)
T d1ulua_          84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK-----------  152 (256)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----------
T ss_pred             cCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC-----------
Confidence            45689999998864311       12222   234556655666665554332 356777765433211           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.|..-.++.+.-.-..+-+.+|..++  +..|++-.+.
T Consensus       153 -~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~I~  189 (256)
T d1ulua_         153 -VVPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAIS  189 (256)
T ss_dssp             -BCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhc--ccCCEEeeec
Confidence             233333344444334457788888885  5667665554

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.75  E-value=0.036  Score=47.93  Aligned_cols=153  Identities=10%  Similarity=0.052  Sum_probs=87.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcH-------HhhhCCCCEEEE
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQL-------EDALTGMDIVII  120 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~-------~~al~~aDiVIi  120 (358)
                      ..|+||++.+|..+|..|++.|.  .|++.|++. ...+...+.......++..   ..+.       .+.+-.-|++|.
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~---~~~~~~~~~~~~~~~G~iDiLVn   77 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMS---EQEPAELIEAVTSAYGQVDVLVS   77 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECC---CCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCC---HHHHHHHHHHHHHHcCCCCEEEE
Confidence            57999999999999999999997  999999875 2111111111111122211   1222       233457899999


Q ss_pred             cCCCCC--CC--CCCHHh---HHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 018265          121 PAGVPR--KP--GMTRDD---LFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (358)
Q Consensus       121 ~ag~~~--~~--g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kvi  189 (358)
                      .||...  ++  ..+..+   .+..|    ....+.+.+.+++.. .+.||+++.-....            +.|..-.|
T Consensus        78 NAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~~------------~~~~~~~Y  144 (252)
T d1zmta1          78 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFG------------PWKELSTY  144 (252)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTS------------CCTTCHHH
T ss_pred             CCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccccccccc------------cccccccc
Confidence            887532  22  122222   22333    456677777777654 56677776543222            22222234


Q ss_pred             EeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      +.+.-.-..|-+.+|..++  +..|++-.+..
T Consensus       145 ~asKaal~~lt~~lA~ela--~~gIrVN~I~P  174 (252)
T d1zmta1         145 TSARAGACTLANALSKELG--EYNIPVFAIGP  174 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTCCEEEEEE
T ss_pred             ccccccHHHHHHHHHHHhc--ccCcEEEEEec
Confidence            4443334457788888885  56676655553

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.69  E-value=0.043  Score=47.28  Aligned_cols=154  Identities=21%  Similarity=0.204  Sum_probs=89.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCcH----------HhhhCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQL----------EDALTG  114 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~~  114 (358)
                      |.|+||++.+|..++..|+..|.  .|++.|.+.   .+....++....  .++..+.. -+|.          .+.+..
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            67889999999999999999998  888888755   222223333211  12222111 1121          222357


Q ss_pred             CCEEEEcCCCCCCCC---CC---HHhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018265          115 MDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (358)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p  184 (358)
                      -|++|..||......   .+   -...+..|    ....+..++.+.+. ..+.||+++.-...           . +.|
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~-----------~-~~~  146 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVGL-----------I-GNI  146 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH-----------H-CCT
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhhc-----------C-CCC
Confidence            899999998654321   12   12233444    45566666666654 46788887653311           1 334


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      ..-.|+.+.-.-..|-+.+|..++  +..|++-.+-.
T Consensus       147 ~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I~P  181 (244)
T d1edoa_         147 GQANYAAAKAGVIGFSKTAAREGA--SRNINVNVVCP  181 (244)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEEec
Confidence            334455554445567888888885  56676655543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.69  E-value=0.016  Score=51.00  Aligned_cols=152  Identities=21%  Similarity=0.214  Sum_probs=85.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCc----------HHhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~al  112 (358)
                      ...+.|+||++.+|..++..|+..|.  +|++.|++.  +.....++..     .+..+.. -+|          ..+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHHh
Confidence            45799999999999999999999998  999999875  2222333322     1111100 011          12335


Q ss_pred             CCCCEEEEcCCCCCCCC-------CC----HHhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHH
Q 018265          113 TGMDIVIIPAGVPRKPG-------MT----RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~g-------~~----r~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~  177 (358)
                      ...|++|..||......       +.    -...+..|    ....+...+.+++.  ++-+|+++.-....        
T Consensus        78 g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~g~iI~i~S~~~~~--------  147 (276)
T d1bdba_          78 GKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS--RGNVIFTISNAGFY--------  147 (276)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCGGGTS--------
T ss_pred             CCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc--CCCceeeeechhcc--------
Confidence            68899999998642211       11    11223344    45566667777654  24444444322211        


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       178 ~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                          +.|..-.|+.+.-.-..|-+.+|..++  +. |++-.+..
T Consensus       148 ----~~~~~~~Y~asKaal~~ltr~lA~ela--~~-IrVN~I~P  184 (276)
T d1bdba_         148 ----PNGGGPLYTAAKHAIVGLVRELAFELA--PY-VRVNGVGS  184 (276)
T ss_dssp             ----TTSSCHHHHHHHHHHHHHHHHHHHHHT--TT-CEEEEEEE
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHhh--cc-eEEcccCC
Confidence                122222344443333457788899886  33 76655553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.62  E-value=0.0099  Score=51.64  Aligned_cols=38  Identities=18%  Similarity=0.075  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           43 GSPGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..+.+++.|+||+|.  +|.++|..|+..|.  +|+|.+.+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            356679999997664  99999999999997  899999876

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.051  Score=43.03  Aligned_cols=101  Identities=8%  Similarity=-0.008  Sum_probs=61.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCcH----HhhhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQL----EDALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~----~~al~~aDiVI  119 (358)
                      +.+|.|+|. |.+|..++..|...+.  +++++|.++.  .....++.... ..-+.+  ..+|.    +..+.+||.||
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~-~~vi~G--d~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN-ADVIPG--DSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT-CEEEES--CTTSHHHHHHHTTTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCC-cEEEEc--cCcchHHHHHhccccCCEEE
Confidence            448999998 9999999999998887  8999998762  22233332211 111221  11222    23357899999


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCCC
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVN  167 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d  167 (358)
                      ++.+..           ..|+.+    +..+++.+|+..++..+ +|.+
T Consensus        77 ~~~~~d-----------~~n~~~----~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          77 ALSDND-----------ADNAFV----VLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             ECSSCH-----------HHHHHH----HHHHHHHTSSSCEEEECSSGGG
T ss_pred             EccccH-----------HHHHHH----HHHHHHhCCCCceEEEEcCHHH
Confidence            985321           335433    34556777887655554 5543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.58  E-value=0.045  Score=47.04  Aligned_cols=154  Identities=18%  Similarity=0.111  Sum_probs=91.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCc-------HHhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQ-------LEDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d-------~~~al  112 (358)
                      ..++.|+||++.+|..+|..|+..|.  +|++.|++.  +.....++.     ..+..+..    ..+       ..+.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45789999999999999999999998  999999876  222222221     11111111    111       12334


Q ss_pred             CCCCEEEEcCCCCCC-C--CCC---HHhHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018265          113 TGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~~~~~p~  185 (358)
                      ..-|++|..+|.... +  ..+   -...+.-|+.....+.+....+.. ...+++.+.....-.+             .
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~-------------~  144 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAF-------------G  144 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHH-------------H
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccccc-------------C
Confidence            679999998876432 1  122   234466777777777777666653 3445555544322211             0


Q ss_pred             CcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEEe
Q 018265          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (358)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G~  221 (358)
                      .-.++.+.-.-..|-+.+|+.++  +..|++-.+-.
T Consensus       145 ~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I~P  178 (241)
T d2a4ka1         145 LAHYAAGKLGVVGLARTLALELA--RKGVRVNVLLP  178 (241)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHT--TTTCEEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHHHHHh--HhCCEEeeecc
Confidence            11244554455668899999985  56676666553

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.059  Score=44.58  Aligned_cols=92  Identities=23%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      ....+|+|+|. |.+|..++..+..-+.  ++..+|......         ..... .   ..++++.++.||+|++...
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~---------~~~~~-~---~~~l~ell~~sDii~i~~p  105 (188)
T d1sc6a1          42 ARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLP---------LGNAT-Q---VQHLSDLLNMSDVVSLHVP  105 (188)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCC---------CTTCE-E---CSCHHHHHHHCSEEEECCC
T ss_pred             ccceEEEEeec-ccchhhhhhhcccccc--eEeeccccccch---------hhhhh-h---hhhHHHHHhhccceeeccc
Confidence            34569999998 9999999998887776  999999754110         00111 1   2367899999999999764


Q ss_pred             CCC-CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          124 VPR-KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       124 ~~~-~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      ... ..++-..              +.++...+++++||++=.
T Consensus       106 lt~~T~~li~~--------------~~l~~mk~~a~lIN~aRG  134 (188)
T d1sc6a1         106 ENPSTKNMMGA--------------KEISLMKPGSLLINASRG  134 (188)
T ss_dssp             SSTTTTTCBCH--------------HHHHHSCTTEEEEECSCS
T ss_pred             CCcchhhhccH--------------HHHhhCCCCCEEEEcCcH
Confidence            322 1222111              123344578999998733

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.45  E-value=0.041  Score=47.72  Aligned_cols=156  Identities=18%  Similarity=0.148  Sum_probs=83.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCc----------HHhhhC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d----------~~~al~  113 (358)
                      .+.|+||++.+|.+++..|+..|.  +|++.+.+.   .+....++.+..  .++..+. .-+|          ..+.+-
T Consensus         8 ~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           8 VALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            689999999999999999999998  888866544   222333444332  1222211 1112          122345


Q ss_pred             CCCEEEEcCCCCCCCC---CC---HHhHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018265          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (358)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~  186 (358)
                      .-|++|..+|......   .+   -...+..|+.-...+++....+- .++.+++++......           .++|..
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~-----------~~~~~~  152 (259)
T d1ja9a_          84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM-----------TGIPNH  152 (259)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC-----------CSCCSC
T ss_pred             CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccc-----------cCCCCc
Confidence            7899999998643211   12   22334555544444444433332 234555544332211           123332


Q ss_pred             cEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      -.++.+.-....+-+.+|..++  +..|++-++-
T Consensus       153 ~~Y~asK~al~~l~r~lA~e~~--~~gIrvN~I~  184 (259)
T d1ja9a_         153 ALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCIA  184 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHh--hcCeEEeccC
Confidence            2334444334457788888886  4556554444

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.35  E-value=0.0093  Score=50.48  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .||+|||| |..|.+.|+.|.+.|.  +|.++|.+.
T Consensus         7 ~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            38999999 9999999999999998  999999754

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=95.34  E-value=0.018  Score=48.37  Aligned_cols=91  Identities=14%  Similarity=0.213  Sum_probs=57.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEE---------------------eC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGF---------------------LG  104 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~---------------------~~  104 (358)
                      +||.|||. |.-|.+++..+...++ ..+++.+|.|.     .+|.......++..-                     ..
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL-----QVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH-----HHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH-----HHHhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            58999998 9999999998887664 34888898864     223332211111110                     00


Q ss_pred             CCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHH
Q 018265          105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI  150 (358)
Q Consensus       105 t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i  150 (358)
                      .....+.+.++|+||++||..-..|       ..-.+++.++++..
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlGGgTG-------tgaapviA~~ake~  113 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFGGGTG-------TGASPVIAKIAKEM  113 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCeEEEEEecCCCcc-------cchHHHHHHHHHHc
Confidence            1245677899999999988753222       22356776666654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.23  E-value=0.026  Score=45.11  Aligned_cols=61  Identities=15%  Similarity=0.144  Sum_probs=38.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ||++||. |.+|+.++..|...+.  .++ +|....+  ..++..... . . .    .. .+.+.++|++|++.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~~--~~~~~~~~~-~-~-~----~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFEK--ALRHQEEFG-S-E-A----VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTHH--HHHHHHHHC-C-E-E----CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHHH--HHHHHHHcC-C-c-c----cc-cccccceeEEEecc
Confidence            8999998 9999999999988775  554 5543321  122221111 1 1 1    12 35577899998873

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.14  E-value=0.011  Score=50.60  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~   81 (358)
                      ..||+|||| |..|.++|..|.+.|+  +++++|..
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERS   36 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            469999999 9999999999999998  99999974

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.13  E-value=0.027  Score=46.19  Aligned_cols=70  Identities=11%  Similarity=0.235  Sum_probs=43.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHHHHhc-CCCCCeEEEEeCCCcHHhhh--CCCCEEEEc
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISH-MDTNAVVRGFLGQQQLEDAL--TGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~~al--~~aDiVIi~  121 (358)
                      ++||+|||+ |.+|...+..+...+.+ +|+ ++|.+...+.  ++.. .......+.+   +|+++.+  .+.|+|+++
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~--~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAK--AFATANNYPESTKIH---GSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccc--cchhccccccceeec---CcHHHhhhccccceeeec
Confidence            369999998 99999999888776543 555 6787652221  1111 1111223333   4677766  568899987


Q ss_pred             C
Q 018265          122 A  122 (358)
Q Consensus       122 a  122 (358)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.97  E-value=0.0085  Score=51.22  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |||+|||| |..|.+.|..|.+.|+  ++.|++...
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            79999998 9999999999999998  899998754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.94  E-value=0.01  Score=51.86  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .++.||+|||| |..|.+.|..|.+.|+  +|+++|...
T Consensus        28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            34569999998 9999999999999998  999999754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.93  E-value=0.11  Score=41.49  Aligned_cols=99  Identities=14%  Similarity=0.067  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHH---hhh-----CCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLE---DAL-----TGM  115 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~---~al-----~~a  115 (358)
                      +..+|+|+|+ |.+|...+..+...|.  +++.+|.++ ....+.++.-   ...+.......+..   +.+     .++
T Consensus        26 ~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          26 LGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhcccccCC
Confidence            3458999997 9999999988888886  899999876 3333343321   11111100111211   112     469


Q ss_pred             CEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       116 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      |+||.++|.+               ..+.+.   ++-..|.+.+++++.|..
T Consensus       100 D~vid~~g~~---------------~~~~~a---~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2         100 NVTIDCSGNE---------------KCITIG---INITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             SEEEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCSS
T ss_pred             ceeeecCCCh---------------HHHHHH---HHHHhcCCceEEEecCCC
Confidence            9999987642               112222   233348899998876654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.86  E-value=0.22  Score=42.31  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..|+||++.+|.+++..|+..|.  +|++.|++.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            36899999999999999999998  999999886

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.14  Score=40.97  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=58.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhh--------CCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDAL--------TGMD  116 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--------~~aD  116 (358)
                      .-+|+|+|+ |.+|...+..+...|. ..|+.+|.++ ....+.++.   . ..+... ...+..+..        .++|
T Consensus        27 gd~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~G---a-~~~~~~-~~~~~~~~~~~~~~~~g~g~D   99 (171)
T d1pl8a2          27 GHKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIG---A-DLVLQI-SKESPQEIARKVEGQLGCKPE   99 (171)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT---C-SEEEEC-SSCCHHHHHHHHHHHHTSCCS
T ss_pred             CCEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhC---C-cccccc-cccccccccccccccCCCCce
Confidence            348999998 9999999988887774 4799999876 222333331   1 112221 223433322        3799


Q ss_pred             EEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       117 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      +||.+.|.+               ..+....+.   ..|.+.+++++.|.+
T Consensus       100 vvid~~G~~---------------~~~~~a~~~---~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2         100 VTIECTGAE---------------ASIQAGIYA---TRSGGTLVLVGLGSE  132 (171)
T ss_dssp             EEEECSCCH---------------HHHHHHHHH---SCTTCEEEECSCCCS
T ss_pred             EEEeccCCc---------------hhHHHHHHH---hcCCCEEEEEecCCC
Confidence            999997642               122222222   237888888875543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.04  Score=45.28  Aligned_cols=76  Identities=24%  Similarity=0.283  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH----HHHHhcCCCCCeEEEEeC--CCcHHhhhCCCCE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV----TADISHMDTNAVVRGFLG--QQQLEDALTGMDI  117 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~----~~dl~~~~~~~~v~~~~~--t~d~~~al~~aDi  117 (358)
                      +..+|+|+|+ |.+|.+++..|...+. .+|++++++.. ...    +.++... ....+.....  ..++.+.+.++|+
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhhcccce
Confidence            4569999998 9999999999988764 59999998762 112    2223221 1122322211  1234566789999


Q ss_pred             EEEcCC
Q 018265          118 VIIPAG  123 (358)
Q Consensus       118 VIi~ag  123 (358)
                      ||.+..
T Consensus        94 iIN~Tp   99 (182)
T d1vi2a1          94 LTNGTK   99 (182)
T ss_dssp             EEECSS
T ss_pred             eccccC
Confidence            999753

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=94.84  E-value=0.055  Score=49.24  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=48.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..++|||+ |..+..-+..+..--.+.+|.++|++.  ....+.++... ....+..   ..+.++|+++||+|+.+.
T Consensus       129 ~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~-~g~~v~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         129 RKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             ceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhc-cCCCcee---cCCHHHHHhcCCceeecc
Confidence            38999998 988887776554432367999999986  33344555432 1233443   357899999999998754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.69  E-value=0.014  Score=48.34  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=29.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |||+|||| |++|..+|..|...+...+|.+++.+.
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            89999999 999999999998765445999998654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=94.66  E-value=0.0039  Score=49.87  Aligned_cols=62  Identities=10%  Similarity=0.059  Sum_probs=34.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      |++||+ |.+|++++..|.....  ...+++++.  ....++.+... ..      ..+.+++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~-~~------~~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYG-GK------AATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTC-CC------CCSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhccc-cc------ccchhhhhccCcEEEEec
Confidence            689998 9999999987755433  234677654  22233332211 00      123467899999999985

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.64  E-value=0.015  Score=46.86  Aligned_cols=70  Identities=23%  Similarity=0.446  Sum_probs=45.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (358)
                      .||+|+||+|.+|.-+...|...++ ..++.++..++..|..  +...  .+......   ..+..+.++|+++++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~--~~~~--~~~~~~~~---~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS--LKFK--DQDITIEE---TTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCE--EEET--TEEEEEEE---CCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccc--cccc--CCcccccc---cchhhhhhhhhhhhccC
Confidence            3899999999999999988887763 5688888654322221  1111  12222221   12456789999999864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.51  E-value=0.018  Score=51.75  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=30.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .||+|||| |..|.+.|..|+..+...++++++.+.
T Consensus         5 KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            47999999 999999999998877666999999875

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.43  E-value=0.02  Score=51.32  Aligned_cols=40  Identities=20%  Similarity=0.270  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT   87 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~   87 (358)
                      +++||+|||| |.-|.+.|..|.+.|.  +|.+++.+. .-|.+
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGGG
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCCCcCee
Confidence            4569999998 9999999999998887  999999876 44544

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0052  Score=55.07  Aligned_cols=106  Identities=21%  Similarity=0.247  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEeCCCc--hhHHHHHhcCCCCCeEE--EEeCCCcHHhhhC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVNT--PGVTADISHMDTNAVVR--GFLGQQQLEDALT  113 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~----~~~-----~~el~L~D~~~~--~g~~~dl~~~~~~~~v~--~~~~t~d~~~al~  113 (358)
                      .||+|.|| |..|..++..|..    .|+     ...++++|.+.+  ++. .|+.+....+..+  ......+++++++
T Consensus        26 ~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r-~~~~~~~k~~~a~~~~~~~~~~L~e~i~  103 (294)
T d1pj3a1          26 HKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGR-KAKIDSYQEPFTHSAPESIPDTFEDAVN  103 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTC-SSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCC-CcccHHHHHHhhccccccchhHHHHHHH
Confidence            48999999 9999999877643    343     256999998651  211 1111110000000  0011235778776


Q ss_pred             --CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          114 --GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       114 --~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                        +.|++|-+.+.+.-              +-+++.+.|.+.+++.+|+-.|||..-
T Consensus       104 ~~kptvliG~S~~~g~--------------ft~evi~~Ma~~~~~PIIFaLSNPt~~  146 (294)
T d1pj3a1         104 ILKPSTIIGVAGAGRL--------------FTPDVIRAMASINERPVIFALSNPTAQ  146 (294)
T ss_dssp             HHCCSEEEECCCSSCC--------------SCHHHHHHHHHHCSSCEEEECCSSGGG
T ss_pred             hcCCceEEEecCCCCc--------------CCHHHHHHHHhcCCCcEEEEccCCCCc
Confidence              88988887664421              124566677788999999999999753

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.35  E-value=0.26  Score=42.16  Aligned_cols=42  Identities=19%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             EEE-EEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCC--chhHHHHHh
Q 018265           48 KVA-VLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADIS   91 (358)
Q Consensus        48 KI~-IiGa~G~vG~~~a~~l~~---~~~~~el~L~D~~~--~~g~~~dl~   91 (358)
                      ||+ |+||++.+|..++..|++   .|.  .|+++|++.  ++....++.
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHH
Confidence            555 559999999999999985   455  999999876  333444554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.31  E-value=0.022  Score=48.61  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |+||+|||| |..|.++|..|.+.|+. .+.+++...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi~-~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGIG-KVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            589999999 99999999999998842 788998754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.059  Score=43.67  Aligned_cols=70  Identities=14%  Similarity=0.306  Sum_probs=45.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      .+..+|.|+|| |-.+.++++.|...+.  +|.+++++..++  .+..+.+.   ..+...  +.+ +....++|+||.+
T Consensus        16 ~~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~--~~~-~~~~~~~dliIN~   86 (170)
T d1nyta1          16 RPGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQAL--SMD-ELEGHEFDLIINA   86 (170)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEEC--CSG-GGTTCCCSEEEEC
T ss_pred             CCCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---cccccc--ccc-cccccccceeecc
Confidence            34569999998 9999999999998886  799998865222  22222221   223332  112 2235789999997


Q ss_pred             C
Q 018265          122 A  122 (358)
Q Consensus       122 a  122 (358)
                      .
T Consensus        87 T   87 (170)
T d1nyta1          87 T   87 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.17  Score=40.48  Aligned_cols=134  Identities=15%  Similarity=0.228  Sum_probs=71.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      -.+..+|+|+|+ |.+|...+..+...|.  +++.+|.+. ....+.++.   . ..+-............++.|+||.+
T Consensus        28 ~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lG---a-d~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          28 AGPGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALG---A-DEVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHT---C-SEEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCCCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccC---C-cEEEECchhhHHHHhcCCCceeeee
Confidence            344568999998 9999999988888776  666788765 223333332   1 1111111111222334689999999


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee---eccHHH
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT---MLDVVR  198 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t---~lds~R  198 (358)
                      .|.+..        +          -..+.-..|.+.++.++-|.+....+...   .. -+...+++|..   .-|..+
T Consensus       101 ~g~~~~--------~----------~~~~~~l~~~G~iv~~G~~~~~~~~~~~~---~l-~~k~~~i~Gs~~~~~~d~~e  158 (168)
T d1uufa2         101 VAAPHN--------L----------DDFTTLLKRDGTMTLVGAPATPHKSPEVF---NL-IMKRRAIAGSMIGGIPETQE  158 (168)
T ss_dssp             CSSCCC--------H----------HHHHTTEEEEEEEEECCCC-------CHH---HH-HTTTCEEEECCSCCHHHHHH
T ss_pred             eecchh--------H----------HHHHHHHhcCCEEEEeccCCCCcccccHH---HH-HHCCcEEEEEeecCHHHHHH
Confidence            775421        0          11223345788888887654432211111   11 13345788883   344444


Q ss_pred             HHHHHHH
Q 018265          199 ANTFVAE  205 (358)
Q Consensus       199 ~~~~lA~  205 (358)
                      +..++++
T Consensus       159 ~l~l~a~  165 (168)
T d1uufa2         159 MLDFCAE  165 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4445444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.22  E-value=0.018  Score=47.02  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .||+|||| |..|...|..|.+.|+- ++.++|...
T Consensus         5 ~kVaIIGa-GpaGl~aA~~l~~~G~~-~V~v~E~~~   38 (196)
T d1gtea4           5 AKIALLGA-GPASISCASFLARLGYS-DITIFEKQE   38 (196)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCC-CEEEEESSS
T ss_pred             CEEEEECC-hHHHHHHHHHHHHCCCC-eEEEEEecC
Confidence            49999999 99999999999999872 588999766

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.20  E-value=0.047  Score=46.24  Aligned_cols=91  Identities=16%  Similarity=0.264  Sum_probs=55.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEE-------E--------------eC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRG-------F--------------LG  104 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-------~--------------~~  104 (358)
                      .||.|||. |.-|.+++..+...++ ..+.+.+|.|.     .+|.+.....++..       .              ..
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~   89 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA-----QQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKES   89 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH-----HHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHT
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH-----HHHhcCCcchhcccccccccccccccchHHHHHHHHHH
Confidence            49999998 9999999998887764 35888888864     12232221111111       0              00


Q ss_pred             CCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHH
Q 018265          105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI  150 (358)
Q Consensus       105 t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i  150 (358)
                      .....+.++++|.||++||..-..   .    ..-.+++.++++..
T Consensus        90 ~~~I~~~l~~~d~vfi~AGlGGGT---G----sgaapvia~~ake~  128 (209)
T d2vapa1          90 AEEIKAAIQDSDMVFITCGLGGGT---G----TGSAPVVAEISKKI  128 (209)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTSSH---H----HHHHHHHHHHHHHT
T ss_pred             HHHHHHhccCCCEEEEEEeCCCCc---c----ccHHHHHHHHHHHc
Confidence            014566789999999998875322   2    22256666665553

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.19  E-value=0.023  Score=48.34  Aligned_cols=33  Identities=33%  Similarity=0.478  Sum_probs=30.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +||+|||| |.-|.+.|..|.+.|+  +++++|...
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            49999998 9999999999999998  999999754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.12  Score=44.91  Aligned_cols=115  Identities=16%  Similarity=0.137  Sum_probs=67.5

Q ss_pred             CEE-EEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCc----------HHhhh
Q 018265           47 FKV-AVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQ----------LEDAL  112 (358)
Q Consensus        47 ~KI-~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d----------~~~al  112 (358)
                      ++| .|+||++-+|..++..|+.. +.  .|++.+++.  .+..+.+|............ .-+|          ..+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQL-DIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEEC-CTTCHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEE-ecCCHHHHHHHHHHHHHhc
Confidence            478 47899999999999998864 65  899999987  33334445432211111111 1112          22334


Q ss_pred             CCCCEEEEcCCCCCCC-C--CCHH---hHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 018265          113 TGMDIVIIPAGVPRKP-G--MTRD---DLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (358)
Q Consensus       113 ~~aDiVIi~ag~~~~~-g--~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  164 (358)
                      ..-|++|..||+.... .  .+..   ..+..|+--...+++.+...- +.+.+++++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            6799999999974322 1  1121   234556655555555554432 3577888765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.068  Score=43.35  Aligned_cols=94  Identities=17%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (358)
                      .+|+|+|- |.+|..+|..+...+-  .+..+|+++..+... ..+..   .+      ..+++++..+|+||.+.|...
T Consensus        25 k~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG~---~v------~~~~~a~~~adivvtaTGn~~   91 (163)
T d1li4a1          25 KVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEGY---EV------TTMDEACQEGNIFVTTTGCID   91 (163)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTTC---EE------CCHHHHTTTCSEEEECSSCSC
T ss_pred             CEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCce---Ee------eehhhhhhhccEEEecCCCcc
Confidence            47999998 9999999999998886  999999987333222 12221   11      236899999999999876432


Q ss_pred             CCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCCCccH
Q 018265          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTV  170 (358)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~~t  170 (358)
                      -  ..               .+.+++--+.+++.|++ -...+-+
T Consensus        92 v--I~---------------~eh~~~MKdgaIL~N~Ghfd~EId~  119 (163)
T d1li4a1          92 I--IL---------------GRHFEQMKDDAIVCNIGHFDVEIDV  119 (163)
T ss_dssp             S--BC---------------HHHHTTCCTTEEEEECSSSTTSBCH
T ss_pred             c--hh---------------HHHHHhccCCeEEEEeccccceecH
Confidence            1  11               12333344678888876 4444543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.032  Score=46.09  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++.||+|||| |..|.+.|..|.+.|+  ++.|+|...
T Consensus        42 ~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          42 QKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            3469999998 9999999999999998  999999865

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.90  E-value=0.026  Score=44.86  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .||+|||| |++|..+|..|...+.-.+|+|+|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            49999999 999999999998766544999999775

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.89  E-value=0.022  Score=46.71  Aligned_cols=73  Identities=18%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC---CeEEEEeCCCcHHhhhCCCCEE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      .+..+|.|+|+ |.++.++++.|...+   +|.+++++.  ++..+.++......   ..+..    .++...+.++|+|
T Consensus        16 ~~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dli   87 (177)
T d1nvta1          16 VKDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDII   87 (177)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCEE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhhh
Confidence            45669999998 989999998886543   999999875  23334444322111   12222    2445667899999


Q ss_pred             EEcCCC
Q 018265          119 IIPAGV  124 (358)
Q Consensus       119 Ii~ag~  124 (358)
                      |.+...
T Consensus        88 In~tp~   93 (177)
T d1nvta1          88 INATPI   93 (177)
T ss_dssp             EECSCT
T ss_pred             ccCCcc
Confidence            997544

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.83  E-value=0.054  Score=45.93  Aligned_cols=72  Identities=15%  Similarity=0.135  Sum_probs=42.8

Q ss_pred             CCCCEEEEEcCCCchHH-HHHHHHHhCCCCcEEE-EEeCCCchh--HHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCCE
Q 018265           44 SPGFKVAVLGAAGGIGQ-PLAMLMKINPLVSVLH-LYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALT--GMDI  117 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~-~~a~~l~~~~~~~el~-L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDi  117 (358)
                      .++.||+|||+ |.+|. +++..+...+.+ +|+ ++|++....  ...++. .. ...+..   .+|+++.++  +.|+
T Consensus        31 ~~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~---~~d~~ell~~~~iD~  103 (221)
T d1h6da1          31 DRRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG-VD-PRKIYD---YSNFDKIAKDPKIDA  103 (221)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT-CC-GGGEEC---SSSGGGGGGCTTCCE
T ss_pred             CCCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhc-cc-cccccc---cCchhhhccccccee
Confidence            35679999998 99996 455555554433 555 889876222  222211 11 122332   357777775  5888


Q ss_pred             EEEcC
Q 018265          118 VIIPA  122 (358)
Q Consensus       118 VIi~a  122 (358)
                      |+++.
T Consensus       104 V~I~t  108 (221)
T d1h6da1         104 VYIIL  108 (221)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            98874

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.32  Score=42.45  Aligned_cols=157  Identities=13%  Similarity=0.121  Sum_probs=81.5

Q ss_pred             CEEEE-EcCCCchHHHHHHHHHhCCCCcEEEEEeC---CC-chhHHHHH-hcCC-CCCeEEEEeC-CCcHHh---hh---
Q 018265           47 FKVAV-LGAAGGIGQPLAMLMKINPLVSVLHLYDV---VN-TPGVTADI-SHMD-TNAVVRGFLG-QQQLED---AL---  112 (358)
Q Consensus        47 ~KI~I-iGa~G~vG~~~a~~l~~~~~~~el~L~D~---~~-~~g~~~dl-~~~~-~~~~v~~~~~-t~d~~~---al---  112 (358)
                      .||++ +||++-+|.++|..|+..|.  .+++++.   +. ..+...+. .... ....+..+.. -+|.++   ++   
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            37765 59999999999999999885  4444432   22 11111111 1111 1123333211 122211   11   


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---HHhHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHh
Q 018265          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~  180 (358)
                        ..-|++|..+|......   .+   -...+..|    +...+.+.+.+.+.. .+.||+++.-....           
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS~~g~~-----------  147 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLM-----------  147 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTS-----------
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEechhhcC-----------
Confidence              46899999988654321   11   22234445    446677777777654 57777765433222           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       181 ~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                       +.|..-.|+.+.-.-..|-..+|..++  +..|++..+-
T Consensus       148 -~~~~~~~Y~asKaal~~l~~~la~El~--~~gIrVn~V~  184 (285)
T d1jtva_         148 -GLPFNDVYCASKFALEGLCESLAVLLL--PFGVHLSLIE  184 (285)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhh--ccCcEEEEEe
Confidence             233333344443334456677777763  4566555443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.71  E-value=0.24  Score=36.13  Aligned_cols=73  Identities=18%  Similarity=0.336  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcCCCchH-HHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIG-QPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG-~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .+.+||-+||- |-+| +++|..|+..|+  +|.-.|.... ....+|.+..  ..+..  +. + .+.++++|+||.+.
T Consensus         6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~G--i~v~~--g~-~-~~~i~~~d~vV~S~   75 (96)
T d1p3da1           6 RRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQAG--AKIYI--GH-A-EEHIEGASVVVVSS   75 (96)
T ss_dssp             TTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHTT--CEEEE--SC-C-GGGGTTCSEEEECT
T ss_pred             hhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHCC--CeEEE--CC-c-cccCCCCCEEEECC
Confidence            44569999998 6677 667999999999  9999998652 2233444432  33332  22 3 35589999999998


Q ss_pred             CCCC
Q 018265          123 GVPR  126 (358)
Q Consensus       123 g~~~  126 (358)
                      ++|.
T Consensus        76 AI~~   79 (96)
T d1p3da1          76 AIKD   79 (96)
T ss_dssp             TSCT
T ss_pred             CcCC
Confidence            8874

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.65  E-value=0.057  Score=43.63  Aligned_cols=73  Identities=10%  Similarity=0.070  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcC--C-CCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM--D-TNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~--~-~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      +..||+++|-...|..+++..+..-|.  ++.++-...  ......+....  . ....+..   +.|+.+|+++||+|.
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL---LHDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccceEEE---ecCHHHHhhhccEEe
Confidence            456999999966777888888777776  899997754  22222211110  0 1234444   357889999999988


Q ss_pred             EcC
Q 018265          120 IPA  122 (358)
Q Consensus       120 i~a  122 (358)
                      .+-
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            763

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.61  E-value=0.12  Score=42.44  Aligned_cols=73  Identities=15%  Similarity=0.195  Sum_probs=47.6

Q ss_pred             CCCEEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCC--CCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           45 PGFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa-~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      +..||+++|= ..+|..+++..+..-|.  ++.++-...   ......++....  ....+..   +.|+++|++++|+|
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eai~~aDvV   78 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL---TEDPKEAVKGVDFV   78 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhccCCeEEE---EeChhhccccccEE
Confidence            4579999994 24788888888888786  999997644   111112121110  1234444   36789999999998


Q ss_pred             EEcC
Q 018265          119 IIPA  122 (358)
Q Consensus       119 Ii~a  122 (358)
                      ....
T Consensus        79 yt~~   82 (185)
T d1dxha2          79 HTDV   82 (185)
T ss_dssp             EECC
T ss_pred             Eeeh
Confidence            8753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.046  Score=41.45  Aligned_cols=34  Identities=32%  Similarity=0.422  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.||+|||| |++|.-+|..+...|.  ++.+++...
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            459999998 9999999999998887  999999865

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.55  E-value=0.052  Score=41.58  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|||| |++|.-+|..|...+.  ++.+++...
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            359999998 9999999999999887  999999865

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.51  E-value=0.027  Score=48.44  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .|+|||| |-+|.++|+.|++.|.  +|+++|.+.
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999998 9999999999999997  999999764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.47  E-value=0.37  Score=40.86  Aligned_cols=158  Identities=14%  Similarity=0.099  Sum_probs=81.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCCchh-HHHHHhcCCCCCeEEEEeC----CCcHHhh-------
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLG----QQQLEDA-------  111 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~---~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~----t~d~~~a-------  111 (358)
                      ..|.|+||++-+|..++..|+.   .+.  .|++.++++... ...++....  .++..+..    ..+.+++       
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            3699999999999999988864   455  899999887221 222332211  22222211    1122211       


Q ss_pred             --hCCCCEEEEcCCCCCCCC----CCH---HhHHHHH----HHHHHHHHHHHHhh----------CCCeEEEEecCCCCc
Q 018265          112 --LTGMDIVIIPAGVPRKPG----MTR---DDLFNIN----AGIVKTLCEGIAKC----------CPKAIVNLISNPVNS  168 (358)
Q Consensus       112 --l~~aDiVIi~ag~~~~~g----~~r---~~~~~~N----~~i~~~i~~~i~~~----------~p~a~viv~tNP~d~  168 (358)
                        ...-|++|..||.....+    .+.   ...+..|    ....+.+.+.+++.          ...+.+|+++.-...
T Consensus        79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~  158 (248)
T d1snya_          79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS  158 (248)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred             hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence              235899999998743322    121   2233444    34455555556543          124566776544333


Q ss_pred             cHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEE
Q 018265          169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (358)
Q Consensus       169 ~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~  219 (358)
                      +..         ...+..-.|+.+...-..|-+.+|..+.  +..|++..+
T Consensus       159 ~~~---------~~~~~~~~Y~aSKaal~~lt~~la~e~~--~~gI~vn~v  198 (248)
T d1snya_         159 IQG---------NTDGGMYAYRTSKSALNAATKSLSVDLY--PQRIMCVSL  198 (248)
T ss_dssp             STT---------CCSCCCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             cCC---------CCCCChHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEc
Confidence            210         0011111233333333456677777763  445655444

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.40  E-value=0.056  Score=41.12  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.||+|||| |++|.-+|..|...|.  ++.|++...
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            569999999 9999999999988776  999999754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.39  E-value=0.061  Score=41.20  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..||+|||| |++|.-+|..|...|.  ++.+++...
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            3459999998 9999999999999887  999998764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.38  E-value=0.054  Score=40.93  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.||+|||| |++|.-+|..+...|.  ++.+++...
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            469999999 9999999999998887  999999765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.36  E-value=0.1  Score=41.09  Aligned_cols=36  Identities=14%  Similarity=0.151  Sum_probs=30.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~   80 (358)
                      +..+.++|+|||| |.+|..-+..|+..|-  +|++++.
T Consensus         9 ~~l~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1           9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             ECCTTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             eeeCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeC
Confidence            3455679999999 9999999999999886  8899964

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.28  E-value=0.29  Score=41.45  Aligned_cols=102  Identities=23%  Similarity=0.246  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch--------hHHHHHhcCCCCCeEEEEeCCCcHHhhhCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP--------GVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~--------g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  114 (358)
                      +..||++.|| |..|..++..|...+. .++.++|.+.  .+        ....++.+......     ...++.+++++
T Consensus        25 ~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~g   97 (222)
T d1vl6a1          25 EEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-----LSGDLETALEG   97 (222)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----CCSCHHHHHTT
T ss_pred             hhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchh-----hhcchHhhccC
Confidence            4468999999 9999999998887654 5999999874  11        11122222211111     12467899999


Q ss_pred             CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHH
Q 018265          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP  171 (358)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~  171 (358)
                      +++++-+..    +|.-+.              +.+++.++..+|+=.|||..-...
T Consensus        98 ~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e~  136 (222)
T d1vl6a1          98 ADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEIDP  136 (222)
T ss_dssp             CSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSCH
T ss_pred             cceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchhh
Confidence            998777642    222111              245667888888888999876653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.034  Score=47.86  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|+|+|-|.
T Consensus        30 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            349999998 9999999999999886 4999999875

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.14  E-value=0.045  Score=44.08  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=47.1

Q ss_pred             CCCEEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhHHHHHhcC--CCCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           45 PGFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa-~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~~~dl~~~--~~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      +..||+++|= ...|-.+++..+..-|.  ++.++-...  . ..........  .....+..   ++|+++|+++||+|
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~---~~d~~~ai~~aDvi   76 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKETDGSVSF---TSNLEEALAGADVV   76 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEE---ESCHHHHHTTCSEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhcCCceEE---EecHHHhhhhhhhe
Confidence            4569999994 25688888888877776  888887643  1 1111111111  01234444   36889999999999


Q ss_pred             EEcC
Q 018265          119 IIPA  122 (358)
Q Consensus       119 Ii~a  122 (358)
                      ....
T Consensus        77 yt~~   80 (161)
T d1vlva2          77 YTDV   80 (161)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            9863

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.05  Score=46.64  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++.||+|||| |.-|.+.|..|.+.|+  +|.+++-..
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4459999998 9999999999999998  999998654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.94  E-value=0.11  Score=41.95  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..||+|+|+ |.++.++++.|...+. .+|.+++++.
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccH
Confidence            4568999998 9999999999988875 4899998875

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.83  E-value=0.038  Score=45.33  Aligned_cols=80  Identities=20%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEE
Q 018265           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (358)
Q Consensus        43 ~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (358)
                      +.+..+|+|||-+.-||.-++.+|.+.+.  .+.++|++..    ......+.+.. -+.+.... ..++++..+.||+|
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~lk~~~~~aDIv  101 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHH-VEDLGEYS-EDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCE-EEEEEECC-HHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeec-cccccccc-hhHHhhccccCCEE
Confidence            34556999999977889999999998876  7888887541    11111111111 11222221 13467788899999


Q ss_pred             EEcCCCCC
Q 018265          119 IIPAGVPR  126 (358)
Q Consensus       119 Ii~ag~~~  126 (358)
                      |...|.|.
T Consensus       102 IsavG~p~  109 (171)
T d1edza1         102 ITGVPSEN  109 (171)
T ss_dssp             EECCCCTT
T ss_pred             EEccCCCc
Confidence            99988764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.72  E-value=0.052  Score=38.54  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ++|+|+|+ |+.|+-++.....-|+  +++.+|.+.
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            48999998 9999999988887787  999999865

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.72  E-value=0.04  Score=46.02  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=26.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDV   80 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~----~~el~L~D~   80 (358)
                      |||+|||| |-+|.++|+.|++.+.    +.++.+++.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            79999999 9999999999998763    345666654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.72  E-value=0.072  Score=40.72  Aligned_cols=34  Identities=12%  Similarity=0.190  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.|++|||| |.+|.-+|..|...|.  ++.+++...
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            469999999 9999999999998887  999999765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.62  E-value=0.079  Score=41.14  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.||+|||| |++|.-+|..|...+.  ++.+++...
T Consensus        35 ~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            359999998 9999999999999887  999999865

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.56  E-value=0.057  Score=46.11  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             CEE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI-~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ||| .|+||++.+|.+++..|+..|.  +|++.|+++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            455 7889999999999999999998  999999875

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=92.42  E-value=0.023  Score=50.90  Aligned_cols=108  Identities=14%  Similarity=0.210  Sum_probs=61.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCC-
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTG-  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~----~~~~-----~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~-  114 (358)
                      ..||+|.|| |..|..++.+|..    .|+.     ..++++|.+.+ .....|+..... +..+......++.++++. 
T Consensus        25 d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~-~~a~~~~~~~~l~~~i~~~  102 (308)
T d1o0sa1          25 QEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHV-QFAKDMPETTSILEVIRAA  102 (308)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGT-TTCBSSCCCCCHHHHHHHH
T ss_pred             HcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHH-HHHHhcccCCcHHHHHhcc
Confidence            358999999 9999998877653    3432     46999998651 111112221100 001111112345555543 


Q ss_pred             -CCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcc
Q 018265          115 -MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (358)
Q Consensus       115 -aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  169 (358)
                       .+++|-+.+.+   |.           +.+++.+.+.+.+++.+|+-.|||..-.
T Consensus       103 kptvliG~s~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1         103 RPGALIGASTVR---GA-----------FNEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             CCSEEEECSSCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             ccccEEeccccc---CC-----------CCHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence             35666665543   21           1244556777889999999999998633

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=92.42  E-value=0.03  Score=50.00  Aligned_cols=108  Identities=18%  Similarity=0.247  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhC-
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALT-  113 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~----~~~-----~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-  113 (358)
                      +..||+|.|| |..|-.++.+|..    .|+     ...++++|.+. ......|+.+... +..+......++.++++ 
T Consensus        24 ~d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~-~~a~~~~~~~~l~~~i~~  101 (298)
T d1gq2a1          24 SDHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKE-HFAHEHCEMKNLEDIVKD  101 (298)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGG-GGCBSCCCCCCHHHHHHH
T ss_pred             HHcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHH-HHHHHhhhhhhhHHHhhc
Confidence            3458999998 9999998877653    243     25799999865 1111112222110 00000001134555554 


Q ss_pred             -CCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc
Q 018265          114 -GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (358)
Q Consensus       114 -~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  168 (358)
                       +.+++|-+.+.+   |-           +-+++.+.+.+.+++.+|+-.|||..-
T Consensus       102 vkptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~~  143 (298)
T d1gq2a1         102 IKPTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTSK  143 (298)
T ss_dssp             HCCSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGG
T ss_pred             cChheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCCc
Confidence             366777766544   21           123455567788999999999999753

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.42  E-value=0.041  Score=46.08  Aligned_cols=37  Identities=11%  Similarity=0.136  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~   82 (358)
                      +|.||+|||| |.-|.+.|..|...|+     ..++.++|...
T Consensus         1 rp~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           1 RPYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            3569999998 9999999999988652     23899999876

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.41  E-value=0.12  Score=44.25  Aligned_cols=165  Identities=16%  Similarity=0.110  Sum_probs=87.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCcH---Hh-------hh
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---ED-------AL  112 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~-------al  112 (358)
                      |.+..|.|+||++-+|..++..|+..|....|++.+++....  .++.... ...+..+.. -+|.   ++       .+
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~--~~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   77 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH--HHHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence            345689999999999999999999988534788887765222  2233221 122222211 1121   11       11


Q ss_pred             --CCCCEEEEcCCCCCCC----CCCH---HhHHHHH----HHHHHHHHHHHHhhC----------CCeEEEEecCCCCcc
Q 018265          113 --TGMDIVIIPAGVPRKP----GMTR---DDLFNIN----AGIVKTLCEGIAKCC----------PKAIVNLISNPVNST  169 (358)
Q Consensus       113 --~~aDiVIi~ag~~~~~----g~~r---~~~~~~N----~~i~~~i~~~i~~~~----------p~a~viv~tNP~d~~  169 (358)
                        .+-|++|..||.....    ..+.   ...+..|    ..+.+.+.+.+++..          ..+.+++++.....+
T Consensus        78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~  157 (250)
T d1yo6a1          78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI  157 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred             CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccc
Confidence              2489999999964321    1222   2234445    344556666665432          235566655444333


Q ss_pred             HHHHHHHHHHhCCCC--CCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          170 VPIAAEVFKKVGTYD--PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       170 t~~~~~~~~~~~~~p--~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                      ..       ...+.+  +.-.|+.+...-..|-+.+|..+.  +..|++..+-
T Consensus       158 ~~-------~~~~~~~~~~~aY~aSKaal~~l~~~la~el~--~~gI~v~~i~  201 (250)
T d1yo6a1         158 TD-------NTSGSAQFPVLAYRMSKAAINMFGRTLAVDLK--DDNVLVVNFC  201 (250)
T ss_dssp             TT-------CCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEEE
T ss_pred             cC-------CcccccchhHHHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            21       011111  111244444444567788888773  5566655553

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.092  Score=39.67  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=29.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .||+|+|+ |+.|.-++.....-|+  +++.+|.+.
T Consensus        12 ~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          12 TRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            48999998 9999999999888888  999999875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.36  E-value=0.036  Score=48.07  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ||+|||| |.+|.++|..|.+.|+  ++.++|...
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            7999999 9999999999999998  999999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.34  E-value=0.16  Score=41.13  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=46.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhh------CCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMD  116 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------~~aD  116 (358)
                      .+.-+|+|+|+ |.||...+..+...|. ..|+.+|.++ ....+.++.-    ..+-.. ...++.+.+      +++|
T Consensus        26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa----~~~i~~-~~~~~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          26 EMGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGA----TDILNY-KNGHIEDQVMKLTNGKGVD   98 (174)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTC----SEEECG-GGSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCc----cccccc-cchhHHHHHHHHhhccCcc
Confidence            34458999998 9999998888887664 3689999876 2333444431    111001 112333322      4599


Q ss_pred             EEEEcCCCC
Q 018265          117 IVIIPAGVP  125 (358)
Q Consensus       117 iVIi~ag~~  125 (358)
                      +||.+.|.+
T Consensus        99 ~vid~~g~~  107 (174)
T d1jqba2          99 RVIMAGGGS  107 (174)
T ss_dssp             EEEECSSCT
T ss_pred             eEEEccCCH
Confidence            999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.33  E-value=0.098  Score=44.15  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ....||+|||| |..|.+.|..|.+.|+  ++.++|...
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            34569999998 9999999999999998  999999765

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.29  E-value=0.11  Score=46.56  Aligned_cols=68  Identities=10%  Similarity=0.069  Sum_probs=46.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ..++|||+ |..+...+..+...-.+.+|.++|++.  ....+.++.+..  ..+..     +..+++++||+|+.+.
T Consensus       126 ~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~--~~~~~-----~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         126 SVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISASV-----QPAEEASRCDVLVTTT  195 (320)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEEE-----CCHHHHTSSSEEEECC
T ss_pred             cEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC--Ccccc-----chhhhhccccEEEEec
Confidence            48999998 999888877766543467999999876  334444555432  22222     2368899999998753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.25  E-value=0.094  Score=42.58  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +..+|.|+|+ |.++.++++.|.+.+  .+|.+++++.  ++..+..+...   ..+....  .+ ...+.++|+||.+.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~--~~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAVS--MD-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEEE--GG-GCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhc---cccchhh--hc-cccccccceeeecc
Confidence            4568999998 999999999988754  4999999876  23333344321   2333322  12 23478999999985


Q ss_pred             C
Q 018265          123 G  123 (358)
Q Consensus       123 g  123 (358)
                      .
T Consensus        88 p   88 (171)
T d1p77a1          88 S   88 (171)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=92.22  E-value=0.6  Score=39.90  Aligned_cols=31  Identities=23%  Similarity=0.203  Sum_probs=27.2

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        50 ~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .|+||++.+|..++..|+..|.  .|++.|.+.
T Consensus         6 lITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           6 LVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            4669989999999999999997  899988765

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.22  E-value=0.12  Score=43.25  Aligned_cols=102  Identities=21%  Similarity=0.301  Sum_probs=62.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEE-------EE--------------eCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVR-------GF--------------LGQ  105 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~-------~~--------------~~t  105 (358)
                      +|-|||- |..|.+++..+...++ ..+++.+|.|.   ..+  .......++.       +.              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~---~~L--~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA---QAL--LMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH---HHH--HHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH---HHH--hcCCcchhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            6788998 8899999999988775 34888888763   112  2221111111       10              011


Q ss_pred             CcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      ....++++++|+||++||..-..|       ..=.|++.++++....    -.+-++|-|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~g~----l~v~ivt~PF  126 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKLGA----LTVGVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHHTC----EEEEEEEECC
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHcCC----cEEEEEecCh
Confidence            245678899999999998763332       2236888888777531    1234456664

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.21  E-value=0.31  Score=39.27  Aligned_cols=73  Identities=16%  Similarity=0.234  Sum_probs=45.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHh---hh------CCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLED---AL------TGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~---al------~~a  115 (358)
                      .-+|.|+|| |.||...+..+...|. ..|+.+|.++ ....+.++.   . ..+-.. ..++..+   .+      .++
T Consensus        29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lG---a-~~vi~~-~~~~~~~~~~~i~~~~~~~g~  101 (182)
T d1vj0a2          29 GKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIG---A-DLTLNR-RETSVEERRKAIMDITHGRGA  101 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTT---C-SEEEET-TTSCHHHHHHHHHHHTTTSCE
T ss_pred             CCEEEEECC-Cccchhheeccccccc-cccccccccccccccccccc---c-eEEEec-cccchHHHHHHHHHhhCCCCc
Confidence            358999998 9999998888887774 3789999876 223334332   1 111111 1223222   11      368


Q ss_pred             CEEEEcCCCC
Q 018265          116 DIVIIPAGVP  125 (358)
Q Consensus       116 DiVIi~ag~~  125 (358)
                      |+||.+.|.+
T Consensus       102 Dvvid~vG~~  111 (182)
T d1vj0a2         102 DFILEATGDS  111 (182)
T ss_dssp             EEEEECSSCT
T ss_pred             eEEeecCCch
Confidence            9999998754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.18  E-value=0.065  Score=44.93  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=28.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ||+|||| |..|.+.|..|...+...+|.+||...
T Consensus         3 kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            9999998 999999999887654333999999875

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.11  E-value=0.054  Score=44.49  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=29.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ||+|||| |..|.+.|..|.+.|+ .+|++++...
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            8999998 9999999999999885 2699998764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.12  Score=39.42  Aligned_cols=34  Identities=18%  Similarity=0.089  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.||+|||+ |++|.-+|..+...|.  ++.+++...
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            359999999 9999999999998887  999999865

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=92.07  E-value=0.89  Score=38.39  Aligned_cols=118  Identities=16%  Similarity=0.114  Sum_probs=67.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhHHHHHhcCCCCCeEEEEeCC-CcH---Hhh-
Q 018265           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTNAVVRGFLGQ-QQL---EDA-  111 (358)
Q Consensus        42 ~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----~~g~~~dl~~~~~~~~v~~~~~t-~d~---~~a-  111 (358)
                      .|.+.--|.|+||+|.+|..++..|++.|. ..|+|+.++.     ......++...  ...+..+... +|.   ++. 
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~~   81 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELL   81 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHhh
Confidence            355666899999999999999999999885 3688886643     22233444432  2334332211 221   111 


Q ss_pred             --h---CCCCEEEEcCCCCCCCC---CCH---HhHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 018265          112 --L---TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (358)
Q Consensus       112 --l---~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  163 (358)
                        +   -.-|.||+.+|......   ++.   ...+.-|+.....+.+.+... +.+.+++++
T Consensus        82 ~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          82 GGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             HTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence              1   14678888888654321   222   223455666666666665544 344555544

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=92.02  E-value=0.21  Score=40.49  Aligned_cols=56  Identities=21%  Similarity=0.453  Sum_probs=43.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      +..+|+|||.+..||..++..|.+.+.  .+..++..                       +.++.+-+++||+||..+|.
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G~   90 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVGK   90 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSCC
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhccC
Confidence            446999999988899999999988875  66665431                       24556778899999998886


Q ss_pred             C
Q 018265          125 P  125 (358)
Q Consensus       125 ~  125 (358)
                      |
T Consensus        91 p   91 (166)
T d1b0aa1          91 P   91 (166)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.00  E-value=0.12  Score=43.22  Aligned_cols=102  Identities=19%  Similarity=0.317  Sum_probs=61.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEE---------------------EeCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRG---------------------FLGQ  105 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~---------------------~~~t  105 (358)
                      +|-|||- |..|.+++..+...++ ..+++.+|.|.     .+|.......++..                     ....
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDA-----QALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBT-----GGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcH-----HHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            6889998 9999999999988764 34889999875     11111111001100                     0001


Q ss_pred             CcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 018265          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (358)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  166 (358)
                      ....+.++++|+||++||..-..|       ..-+|++.++++...    --.+-++|=|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~ake~g----~lvvaivtlPF  126 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVAKEMG----ILTVAVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHTT----CEEEEEEEECC
T ss_pred             HHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHHHHcC----CCEEEEEecch
Confidence            235677899999999998753322       223677777776532    12344445554

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.34  Score=39.27  Aligned_cols=56  Identities=21%  Similarity=0.407  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      +..+|+|||.+.-||..++..|.+.+-  .+.+++...                       .++.+-+++||+||...|.
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~t-----------------------~~l~~~~~~aDivi~a~G~   92 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSKT-----------------------AHLDEEVNKGDILVVATGQ   92 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTTC-----------------------SSHHHHHTTCSEEEECCCC
T ss_pred             ccceEEEEecCCccchHHHHHHHhccC--ceEEEeccc-----------------------ccHHHHHhhccchhhcccc
Confidence            446999999988899999999998876  777776432                       2344556677777776665


Q ss_pred             C
Q 018265          125 P  125 (358)
Q Consensus       125 ~  125 (358)
                      |
T Consensus        93 ~   93 (170)
T d1a4ia1          93 P   93 (170)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.89  E-value=0.075  Score=40.65  Aligned_cols=34  Identities=18%  Similarity=-0.040  Sum_probs=29.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |.|++|||| |.+|.-+|..+...|.  ++.++..++
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            458999999 9999999999998886  888887654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.77  E-value=0.086  Score=39.67  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=30.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |.|++|+|| |++|.-+|..|...|.  ++.+++..+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            469999998 9999999999998887  999999855

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.74  E-value=0.2  Score=40.29  Aligned_cols=97  Identities=19%  Similarity=0.303  Sum_probs=57.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhC-----CCCE
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALT-----GMDI  117 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-----~aDi  117 (358)
                      .+..+|+|+|+ |.+|...+..+...+. ..++..|.++ ....+.++.-    ..+-.. ...|+.+.++     +.|+
T Consensus        27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga----~~~i~~-~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          27 TPASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA----THVINS-KTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC----SEEEET-TTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC----eEEEeC-CCcCHHHHHHHHcCCCCcE
Confidence            34568999998 9999999988877665 2677788765 3334444431    111111 2234444332     4899


Q ss_pred             EEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      ||.+.|.+               ..+.+..+.   ..|.+.+++++.|
T Consensus       100 vid~~G~~---------------~~~~~~~~~---~~~~G~i~~~G~~  129 (174)
T d1f8fa2         100 ALESTGSP---------------EILKQGVDA---LGILGKIAVVGAP  129 (174)
T ss_dssp             EEECSCCH---------------HHHHHHHHT---EEEEEEEEECCCC
T ss_pred             EEEcCCcH---------------HHHHHHHhc---ccCceEEEEEeec
Confidence            99997642               222222222   3478888887643

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.66  E-value=0.31  Score=38.53  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=43.4

Q ss_pred             CCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           45 PGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        45 ~~~KI~IiGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      +..||+++|=..+  |..+++..+..-|.  +++++-..+......++.+. ....+..+   +|+++++++||+|..+
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~~---~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEILDE-LNYPVKEV---ENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHHTT-CCSCEEEE---SCGGGTGGGCSEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhccc-CCCeEEEE---eCHHHHhhcCCeEEEe
Confidence            3569999998434  88888888887776  55554433311000111111 12345443   5788999999988776

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.62  E-value=0.18  Score=40.73  Aligned_cols=67  Identities=21%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      .++++|+|= |.+|..+|..+...|.  .+..+++|+..+... ..|..   .+      ...++|++.+|++|.+.|..
T Consensus        23 Gk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdGf---~v------~~~~~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          23 GKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEGF---NV------VTLDEIVDKGDFFITCTGNV   89 (163)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTTC---EE------CCHHHHTTTCSEEEECCSSS
T ss_pred             CCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcCC---cc------CchhHccccCcEEEEcCCCC
Confidence            348999998 9999999999998776  899999987433211 22221   11      24689999999999987643

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.57  E-value=1.2  Score=34.55  Aligned_cols=114  Identities=10%  Similarity=-0.019  Sum_probs=66.8

Q ss_pred             CCEEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           46 GFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        46 ~~KI~IiGa~---G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      +.+|+||||+   +..|..++..|...|+  +|+.++.+.  ..   +.      ...   ...++.+.-...|+|++..
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~--~~---i~------G~~---~~~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKY--EE---VL------GRK---CYPSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--SE---ET------TEE---CBSSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCcc--cc---cC------CCc---ccccccccCccceEEEEEe
Confidence            3489999996   5789999999999988  889887542  00   11      011   1234444334789988873


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-e-eccHHHH
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T-MLDVVRA  199 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~-t-~lds~R~  199 (358)
                      .                .+.+.++.+++.+.+++++.+..+.-.+..    .+.+++. |+   +++|= | ..+..||
T Consensus        83 p----------------~~~~~~~~~e~~~~g~k~v~~~~G~~~ee~----~~~a~~~-gi---~vig~~C~~v~~~rl  137 (139)
T d2d59a1          83 K----------------PKLTMEYVEQAIKKGAKVVWFQYNTYNREA----SKKADEA-GL---IIVANRCMMREHERL  137 (139)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCSEEEECTTCCCHHH----HHHHHHT-TC---EEEESCCHHHHHHHH
T ss_pred             C----------------HHHHHHHHHHHHHhCCCEEEEeccccCHHH----HHHHHHC-CC---EEEcCCcChhhhhhh
Confidence            1                345556666666667666544333222222    2333443 43   78886 7 4455544

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.39  E-value=0.099  Score=40.54  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPL   71 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~   71 (358)
                      |||+|.|++|.+|+.++..+...+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            7999999999999999887777665

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.18  E-value=0.26  Score=39.32  Aligned_cols=99  Identities=16%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHH-hhhCCCCEEEEc
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLE-DALTGMDIVIIP  121 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~-~al~~aDiVIi~  121 (358)
                      .+..+|+|+|+ |.+|...+..+...|.  +++.+|.++ ....+.++.   ....+. .....+.. ......|+|+.+
T Consensus        26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lG---a~~~i~-~~~~~~~~~~~~~~~d~vi~~   98 (168)
T d1piwa2          26 GPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMG---ADHYIA-TLEEGDWGEKYFDTFDLIVVC   98 (168)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHT---CSEEEE-GGGTSCHHHHSCSCEEEEEEC
T ss_pred             CCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccC---CcEEee-ccchHHHHHhhhcccceEEEE
Confidence            44569999998 9999998888777776  888899876 334445543   111111 11112222 334678999998


Q ss_pred             CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      .+.......+                ..++-..|.+.+++++-|
T Consensus        99 ~~~~~~~~~~----------------~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          99 ASSLTDIDFN----------------IMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             CSCSTTCCTT----------------TGGGGEEEEEEEEECCCC
T ss_pred             ecCCccchHH----------------HHHHHhhccceEEEeccc
Confidence            6643221110                123334478888888543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.17  Score=42.98  Aligned_cols=158  Identities=13%  Similarity=0.145  Sum_probs=86.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC--------CcHHhhhCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ--------QQLEDALTG  114 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t--------~d~~~al~~  114 (358)
                      |.+.+.|+||++.+|.+++..|+..|.  .|++.|++.  ++....++....  .........        .........
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGNNC--VFAPADVTSEKDVQTALALAKGKFGR   79 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCTTE--EEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCc--cccccccccccccccccccccccccc
Confidence            445678999999999999999999998  899999987  333444443221  001100000        011233456


Q ss_pred             CCEEEEcCCCCCC-------CC--CC---HHhHHHHHHH----HHHHHHHHHHhhC-----CCeEEEEecCCCCccHHHH
Q 018265          115 MDIVIIPAGVPRK-------PG--MT---RDDLFNINAG----IVKTLCEGIAKCC-----PKAIVNLISNPVNSTVPIA  173 (358)
Q Consensus       115 aDiVIi~ag~~~~-------~g--~~---r~~~~~~N~~----i~~~i~~~i~~~~-----p~a~viv~tNP~d~~t~~~  173 (358)
                      .|+.+..++....       +.  .+   -...+..|+.    +.+.+.+.+....     ..+.||+++.-...     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~-----  154 (248)
T d2o23a1          80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF-----  154 (248)
T ss_dssp             CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH-----
T ss_pred             ccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhc-----
Confidence            7888886654221       11  11   1223445544    3444445444332     34677776654311     


Q ss_pred             HHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHhCCCCCCCceEEEE
Q 018265          174 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (358)
Q Consensus       174 ~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~~l~v~~~~v~~~v~G  220 (358)
                            . +.|..-.++.+.-.-..|.+.+|..++  +..|++-.+-
T Consensus       155 ------~-~~~~~~~Y~asKaal~~lt~~la~e~~--~~gIrvN~I~  192 (248)
T d2o23a1         155 ------E-GQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRVMTIA  192 (248)
T ss_dssp             ------H-CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ------c-CCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcceeeec
Confidence                  1 233333344544334457788888885  5666555553

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.05  E-value=0.13  Score=39.13  Aligned_cols=33  Identities=21%  Similarity=0.147  Sum_probs=30.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .+|+|||| |++|.-+|..|...|.  ++.|++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            58999999 9999999999998887  999999765

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=90.97  E-value=0.21  Score=39.72  Aligned_cols=62  Identities=11%  Similarity=0.169  Sum_probs=42.7

Q ss_pred             CCEEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEc
Q 018265           46 GFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (358)
Q Consensus        46 ~~KI~IiGa--~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (358)
                      .+||+++|-  .+.|..+++..+..-|.  +++++.....       ...  ...+..   +.|+++++++||+|..+
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~--~~~~~~---~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDE--ENTFGT---YVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hcc--ccceeE---EEechhccccCceeeee
Confidence            479999997  45699999888887776  7777765321       100  112333   24678999999998875

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.94  E-value=0.19  Score=41.15  Aligned_cols=74  Identities=22%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCc-hhHHHHHhcCC---C--------CCeEEEEeCCCcHHhhh
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNT-PGVTADISHMD---T--------NAVVRGFLGQQQLEDAL  112 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L-~D~~~~-~g~~~dl~~~~---~--------~~~v~~~~~t~d~~~al  112 (358)
                      +.||+|.|- |.+|..++..+.+++-+ ||+- .|.... .....-..+..   .        ...+.   ...++.+.+
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---v~g~~~~~~   75 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIP---VAGTVEDLI   75 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCC---CCCCHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceecccccee---cCCchhhhh
Confidence            469999998 99999999999887644 5444 454432 11111111110   0        00111   123567778


Q ss_pred             CCCCEEEEcCCC
Q 018265          113 TGMDIVIIPAGV  124 (358)
Q Consensus       113 ~~aDiVIi~ag~  124 (358)
                      .++|+||.+.|.
T Consensus        76 ~~vDiViecTG~   87 (178)
T d1b7go1          76 KTSDIVVDTTPN   87 (178)
T ss_dssp             HHCSEEEECCST
T ss_pred             hcCCEEEECCCC
Confidence            899999998763

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.92  E-value=0.81  Score=32.72  Aligned_cols=71  Identities=24%  Similarity=0.288  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCchHH-HHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCC
Q 018265           46 GFKVAVLGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~-~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (358)
                      .|||=+||- |-+|. .+|..|+..|+  .|.-.|..... ....|+...  ..+  +.+ .+ .+-++++|+||.+.++
T Consensus         1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~t~~L~~~G--i~i--~~g-h~-~~~i~~~d~vV~SsAI   70 (89)
T d1j6ua1           1 HMKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETE-RTAYLRKLG--IPI--FVP-HS-ADNWYDPDLVIKTPAV   70 (89)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTT--CCE--ESS-CC-TTSCCCCSEEEECTTC
T ss_pred             CcEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCCh-hHHHHHHCC--CeE--Eee-ec-ccccCCCCEEEEecCc
Confidence            479999999 66775 67888899998  99999987522 223355543  122  212 23 3557999999999888


Q ss_pred             CC
Q 018265          125 PR  126 (358)
Q Consensus       125 ~~  126 (358)
                      +.
T Consensus        71 ~~   72 (89)
T d1j6ua1          71 RD   72 (89)
T ss_dssp             CT
T ss_pred             CC
Confidence            73

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=90.79  E-value=0.6  Score=37.88  Aligned_cols=72  Identities=11%  Similarity=0.215  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCC-CchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH---HHHHhcCCCCCeEEEEeCCCcHHhhhCCCCE
Q 018265           45 PGFKVAVLGAA-GGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (358)
Q Consensus        45 ~~~KI~IiGa~-G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~---~~dl~~~~~~~~v~~~~~t~d~~~al~~aDi  117 (358)
                      +.+||+++|=. ..|..+++..+..-|.  ++.++-...  . ...   +.+.... ....+..   +.|.+++++++|+
T Consensus         4 ~~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~d~~~a~~~aDv   77 (183)
T d1duvg2           4 NEMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITL---TEDVAKGVEGADF   77 (183)
T ss_dssp             GGCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEE---ESCHHHHHTTCSE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEE---EechhhccccCCE
Confidence            45799999951 3577888777777676  999997654  1 111   1222111 1234443   3678999999999


Q ss_pred             EEEcC
Q 018265          118 VIIPA  122 (358)
Q Consensus       118 VIi~a  122 (358)
                      |..+.
T Consensus        78 vyt~~   82 (183)
T d1duvg2          78 IYTDV   82 (183)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            88764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.79  E-value=0.2  Score=37.90  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .+.||+|||| |++|.-+|..+...|.  ++.++....
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            3469999998 9999999999998887  888888655

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.72  E-value=0.2  Score=37.55  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +..+|+|+|+ |.+|.-+|..|...+.  ++.+++...
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            3469999998 9999999999988876  899998765

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=90.34  E-value=0.38  Score=40.68  Aligned_cols=73  Identities=14%  Similarity=0.221  Sum_probs=39.1

Q ss_pred             CCCCEEEEEcCCCc----hHHHHHHHHHhCCCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhC--CCC
Q 018265           44 SPGFKVAVLGAAGG----IGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMD  116 (358)
Q Consensus        44 ~~~~KI~IiGa~G~----vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aD  116 (358)
                      .+++||+|||+ |.    ++....+.+.......+|+ ++|++.....  .+......+....+   .|+++.++  +-|
T Consensus        14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~--~~~~~~~~~~~~~~---~~~~~l~~~~~iD   87 (237)
T d2nvwa1          14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSL--QTIEQLQLKHATGF---DSLESFAQYKDID   87 (237)
T ss_dssp             GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHH--HHHHHTTCTTCEEE---SCHHHHHHCTTCS
T ss_pred             CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHH--HHHHhcccccceee---cchhhcccccccc
Confidence            55679999998 65    4444455565432222655 8888652211  11111011222332   46777764  577


Q ss_pred             EEEEcC
Q 018265          117 IVIIPA  122 (358)
Q Consensus       117 iVIi~a  122 (358)
                      +|+++.
T Consensus        88 ~V~i~t   93 (237)
T d2nvwa1          88 MIVVSV   93 (237)
T ss_dssp             EEEECS
T ss_pred             eeeccC
Confidence            888873

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.23  E-value=0.12  Score=45.04  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=28.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +|+|||| |-+|.++|+.|+..|. .+|+|+|.+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            8999999 9999999999998875 2699999764

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.18  E-value=0.47  Score=38.37  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-CC----CCCeEE-----EEeCCCcHHhhhCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MD----TNAVVR-----GFLGQQQLEDALTGM  115 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-~~----~~~~v~-----~~~~t~d~~~al~~a  115 (358)
                      ++||+|.|- |.+|..++..+..++-+.-+.+.|.........-+.+ ..    ....+.     .+....++.+.+.++
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence            369999998 9999999988887764434445555442111110111 10    000000     011123566778899


Q ss_pred             CEEEEcCCC
Q 018265          116 DIVIIPAGV  124 (358)
Q Consensus       116 DiVIi~ag~  124 (358)
                      |+||-+.|.
T Consensus        81 DvViEcTG~   89 (172)
T d2czca2          81 DIIVDATPG   89 (172)
T ss_dssp             SEEEECCST
T ss_pred             CEEEECCCC
Confidence            999998764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.10  E-value=0.12  Score=42.03  Aligned_cols=32  Identities=25%  Similarity=0.239  Sum_probs=29.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      -|+|||| |..|.+.|..|+..|.  +|.++|.+.
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            4899998 9999999999999998  899999875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=89.81  E-value=0.13  Score=44.18  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=28.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      -|+|||| |.+|.++|+.|++.|.  .++|+|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899998 9999999999999997  899998643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.69  E-value=0.12  Score=45.60  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=32.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT   87 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~   87 (358)
                      +.+|+|||| |..|.++|..|.+.|.  +|.++|.+. .-|.+
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~~iGG~~   40 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRNHIGGNA   40 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSSSSSGGG
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCCCcccce
Confidence            348999998 9999999999998887  899999866 34443

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.68  E-value=0.085  Score=40.69  Aligned_cols=36  Identities=19%  Similarity=0.359  Sum_probs=28.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.||+|+|| |..|..++..+....-..-+.++|.+.
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            459999999 999999987665444345678999876

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.13  Score=48.16  Aligned_cols=35  Identities=31%  Similarity=0.528  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..||.|||+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus        37 ~~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            358999999 9999999999999886 4899999874

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.51  E-value=0.8  Score=37.45  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhh------CCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMD  116 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------~~aD  116 (358)
                      .+...|+|+|+ |.+|...+..++..+. ..++.+|.++ ....+.++.     ...-......|+.+.+      .++|
T Consensus        24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~G-----a~~~~~~~~~~~~~~i~~~t~g~g~D   96 (195)
T d1kola2          24 GPGSTVYVAGA-GPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPEVD   96 (195)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhcc-----ccEEEeCCCcCHHHHHHHHhCCCCcE
Confidence            34558999998 9999887777766653 4899999875 222233221     1211111123443333      4799


Q ss_pred             EEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 018265          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (358)
Q Consensus       117 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  164 (358)
                      ++|.+.|.+........-.-..+.+.+.+..+.+   .|.+.|.++.-
T Consensus        97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~---r~gG~v~~~G~  141 (195)
T d1kola2          97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVT---RVAGKIGIPGL  141 (195)
T ss_dssp             EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHE---EEEEEEEECSC
T ss_pred             EEEECccccccCCcccceeecCcHHHHHHHHHHH---hcCCEEEEeee
Confidence            9999887543211100000001122333333333   37888887753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.98  E-value=0.18  Score=42.24  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=30.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .+.|+||++.+|.+++..|+..|.  +|++.|+++
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            678899999999999999999998  999999876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.76  E-value=2.1  Score=34.12  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCC-CcHHh-----hhCCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ-QQLED-----ALTGMD  116 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t-~d~~~-----al~~aD  116 (358)
                      .+..+|+|+|+ |.+|...+..+...|. ..++..|.++ ....+.++.-.    .+-..... ...+.     .=.++|
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGAT----DCLNPRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCC----cccCCccchhhhhhhHhhhhcCCCc
Confidence            44568999998 9999999998887774 4788999876 33344444311    11100000 11111     126899


Q ss_pred             EEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCC-eEEEEecCCCCc
Q 018265          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVNS  168 (358)
Q Consensus       117 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-a~viv~tNP~d~  168 (358)
                      +||.+.|.+               ..+.   ..++-..|. +.++++..|.+-
T Consensus       101 ~vie~~G~~---------------~~~~---~a~~~~~~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2         101 YSLDCAGTA---------------QTLK---AAVDCTVLGWGSCTVVGAKVDE  135 (174)
T ss_dssp             EEEESSCCH---------------HHHH---HHHHTBCTTTCEEEECCCSSSE
T ss_pred             EEEEecccc---------------hHHH---HHHHHhhcCCeEEEecCCCCCc
Confidence            999998743               1122   222333464 788888877653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.16  E-value=0.29  Score=37.34  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .+.+++|||+ |.+|.-+|..+...|.  ++.+++...
T Consensus        25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            3569999999 9999999999988887  999998754

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=87.88  E-value=0.21  Score=41.86  Aligned_cols=32  Identities=28%  Similarity=0.221  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      -|+|||| |..|...|..|.+.|+  +++|+|.+.
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999998  999999765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.73  E-value=0.25  Score=38.76  Aligned_cols=31  Identities=26%  Similarity=0.295  Sum_probs=26.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ||+|||| |++|..+|..|.. +.  ++.+++...
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            8999998 9999999988864 33  899998643

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=87.57  E-value=0.72  Score=39.61  Aligned_cols=116  Identities=22%  Similarity=0.161  Sum_probs=69.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcCCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (358)
                      ..||++||- -    -....+...+.  ++..+|.++..+   |+             .....++.+..||+||+|+.  
T Consensus       122 g~kV~vIG~-~----P~v~~l~~~~~--~~~VlE~~p~~g---d~-------------p~~~~~~lLp~aD~viiTGs--  176 (251)
T d2h1qa1         122 GKKVGVVGH-F----PHLESLLEPIC--DLSILEWSPEEG---DY-------------PLPASEFILPECDYVYITCA--  176 (251)
T ss_dssp             TSEEEEESC-C----TTHHHHHTTTS--EEEEEESSCCTT---CE-------------EGGGHHHHGGGCSEEEEETH--
T ss_pred             CCEEEEEec-c----hhHHHHHhcCC--cEEEEeCCCCCC---CC-------------CchHHHHhhhcCCEEEEEec--
Confidence            469999986 2    34444555554  899999875221   10             01334688999999999962  


Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHH
Q 018265          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE  205 (358)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~~~~~p~~kviG~t~lds~R~~~~lA~  205 (358)
                                     -++..-.+.|-+.++++..+++.=|...+.+.+    .++ |.  +.+=|+-..|..++...+++
T Consensus       177 ---------------TlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~l----f~~-Gv--~~lag~~v~d~~~~~~~i~~  234 (251)
T d2h1qa1         177 ---------------SVVDKTLPRLLELSRNARRITLVGPGTPLAPVL----FEH-GL--QELSGFMVKDNARAFRIVAG  234 (251)
T ss_dssp             ---------------HHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGG----GGT-TC--SEEEEEEESCHHHHHHHHTT
T ss_pred             ---------------hhhcCCHHHHHHhCCcCCEEEEECCCcccCHHH----Hhc-CC--ceEeEEEEeCHHHHHHHHHc
Confidence                           333344455556676664444444555554421    232 33  33445567899999888875


Q ss_pred             HhC
Q 018265          206 VLG  208 (358)
Q Consensus       206 ~l~  208 (358)
                      --+
T Consensus       235 Ggg  237 (251)
T d2h1qa1         235 AEK  237 (251)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.45  E-value=0.4  Score=37.93  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=28.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~   81 (358)
                      +.+|+|||| |++|.-+|..|...+.-..|.+++..
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence            469999998 99999999999988764466666653

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=87.45  E-value=0.32  Score=41.04  Aligned_cols=106  Identities=11%  Similarity=0.063  Sum_probs=56.1

Q ss_pred             cccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCC---CcEEEEEeCCC-chhHHHHHhcCCCCCeEEE
Q 018265           26 IEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL---VSVLHLYDVVN-TPGVTADISHMDTNAVVRG  101 (358)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~KI~IiGa~G~vG~~~a~~l~~~~~---~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~  101 (358)
                      ++++|..|++.. ++.  ....||+|||= |.-|.+-|+.|...|+   ..--+.+..++ .......-.+.........
T Consensus        27 ~~~~r~~f~~~~-~~~--kg~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v  102 (226)
T d1qmga2          27 VRGGRNLFPLLP-DAF--KGIKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTL  102 (226)
T ss_dssp             EECCGGGGGGHH-HHT--TTCSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCE
T ss_pred             EecccchhhhhH-HHh--cCCCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcc
Confidence            356666665421 111  12248999998 9999999999998542   11113333322 1111111122211011111


Q ss_pred             EeCCCcHHhhhCCCCEEEEcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 018265          102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA  151 (358)
Q Consensus       102 ~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~  151 (358)
                      .    +.+||.+.||+|.++.     |+       +...+++.++.+.++
T Consensus       103 ~----~v~EAv~~ADiVmiLl-----PD-------e~Q~~vy~~I~p~Lk  136 (226)
T d1qmga2         103 G----DMWETISGSDLVLLLI-----SD-------SAQADNYEKVFSHMK  136 (226)
T ss_dssp             E----EHHHHHHTCSEEEECS-----CH-------HHHHHHHHHHHHHSC
T ss_pred             c----CHHHHHhhCCEEEEec-----ch-------HHHHHHHHHHHHhcC
Confidence            1    3478999999999983     22       223455666665554

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.23  E-value=1.1  Score=33.57  Aligned_cols=94  Identities=11%  Similarity=0.022  Sum_probs=54.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcH----HhhhCCCCEEEEcCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL----EDALTGMDIVIIPAG  123 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~al~~aDiVIi~ag  123 (358)
                      .|.|+|. |.+|..++..|...    +++++|.++....  .+..... .-+.+  ..+|.    +..+.+|+.+|++..
T Consensus         2 HivI~G~-g~~g~~l~~~L~~~----~i~vi~~d~~~~~--~~~~~~~-~~i~G--d~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELRGS----EVFVLAEDENVRK--KVLRSGA-NFVHG--DPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSCGG----GEEEEESCTTHHH--HHHHTTC-EEEES--CTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEEECC-CHHHHHHHHHHcCC----CCEEEEcchHHHH--HHHhcCc-ccccc--ccCCHHHHHHhhhhcCcEEEEecc
Confidence            6899998 99999999887432    5678888763222  2222111 11221  11232    123588999999742


Q ss_pred             CCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCC
Q 018265          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPV  166 (358)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~  166 (358)
                      .           -..|+.    ++..+++.+|+..++..+ +|-
T Consensus        72 ~-----------d~~n~~----~~~~~r~~~~~~~iia~~~~~~  100 (129)
T d2fy8a1          72 S-----------DSETIH----CILGIRKIDESVRIIAEAERYE  100 (129)
T ss_dssp             S-----------HHHHHH----HHHHHHHHCSSSCEEEECSSGG
T ss_pred             c-----------hhhhHH----HHHHHHHHCCCceEEEEEcCHH
Confidence            1           133443    344567788987666555 554

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=86.99  E-value=0.25  Score=39.44  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCchHHHHH-HHHHhCCCCcEEEEE-eCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLA-MLMKINPLVSVLHLY-DVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a-~~l~~~~~~~el~L~-D~~~   82 (358)
                      +++||+|||+ |.+|..+. ..+...+.. ||+.+ |++.
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            4579999996 99998754 444444444 66555 6654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.95  E-value=0.61  Score=37.22  Aligned_cols=96  Identities=18%  Similarity=0.208  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      ++..+|.|.||+|.+|...+..++..|.  +++..+.++ ....+.++.   . ..+-.+....+....-+++|+||-+.
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~lG---a-~~~i~~~~~~~~~~~~~g~D~v~d~~   99 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLALG---A-EEAATYAEVPERAKAWGGLDLVLEVR   99 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHTT---C-SEEEEGGGHHHHHHHTTSEEEEEECS
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccc--ccccccccccccccccccc---c-ceeeehhhhhhhhhcccccccccccc
Confidence            3456899999889999999988888886  777777654 222233221   1 12211110011123347899999876


Q ss_pred             CCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 018265          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (358)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  165 (358)
                      |-.          +.          ..++-..|.+.++.+.+|
T Consensus       100 G~~----------~~----------~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2         100 GKE----------VE----------ESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             CTT----------HH----------HHHTTEEEEEEEEEC---
T ss_pred             chh----------HH----------HHHHHHhcCCcEEEEeCC
Confidence            510          11          124444588888887554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.66  E-value=0.25  Score=37.46  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.+++|||| |.+|.-+|..+...|.  ++.++....
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            569999999 9999999999998886  999998765

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.44  E-value=0.29  Score=43.12  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ...|+|||| |..|...|..|.+.|+  +++++|...
T Consensus         7 ~~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           7 EVDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            358999999 9999999999999988  899999865

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.33  E-value=0.28  Score=42.41  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=28.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        49 I~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |+|||| |..|.+.|..|.+.|.  ++.++|...
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            799998 9999999999999998  899999654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.31  E-value=0.19  Score=40.65  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |..+|+|||+ |..|...|..+.+.+.  +++++|...
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANL--QPVLITGME   38 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEeec
Confidence            3458999999 9999999999999888  888887543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.19  E-value=0.29  Score=39.69  Aligned_cols=32  Identities=16%  Similarity=0.260  Sum_probs=28.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~   81 (358)
                      .||+|||| |..|...|..+.+.+.  +++++|..
T Consensus         6 ~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEee
Confidence            59999998 9999999999999887  78888753

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=84.82  E-value=0.34  Score=42.27  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=27.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHh-----CCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKI-----NPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~-----~~~~~el~L~D~~~   82 (358)
                      -|+|||| |.+|.++|..|++     .|+  +++++|...
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            5899999 9999999999964     577  899999764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.71  E-value=1.6  Score=34.13  Aligned_cols=74  Identities=22%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhh------CCCCE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDI  117 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------~~aDi  117 (358)
                      +.-+|+|+|++|.+|...+..+...+. .+++..|.++ ....+.++.   ....+.  ....|+.+.+      ++.|+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~G---a~~~i~--~~~~~~~~~~~~~~~~~~~d~  100 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAG---ADYVIN--ASMQDPLAEIRRITESKGVDA  100 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHT---CSEEEE--TTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcC---Cceeec--cCCcCHHHHHHHHhhcccchh
Confidence            345899999779999988887776664 3899999875 222333332   111111  1123333332      46899


Q ss_pred             EEEcCCC
Q 018265          118 VIIPAGV  124 (358)
Q Consensus       118 VIi~ag~  124 (358)
                      ||.+.|.
T Consensus       101 vid~~g~  107 (170)
T d1jvba2         101 VIDLNNS  107 (170)
T ss_dssp             EEESCCC
T ss_pred             hhccccc
Confidence            9998763

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=84.41  E-value=0.52  Score=38.05  Aligned_cols=77  Identities=19%  Similarity=0.120  Sum_probs=43.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCchhHHHHHh-cCC----CCCeEE-----EEeCCCcHHhhhCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADIS-HMD----TNAVVR-----GFLGQQQLEDALTG  114 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~~~g~~~dl~-~~~----~~~~v~-----~~~~t~d~~~al~~  114 (358)
                      |.||+|-|- |.+|..++..+..++.. +++.+ |+........-+. +..    ......     .+....++.+++.+
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~   78 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE   78 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcC
Confidence            459999998 99999999888777644 55544 4443221111111 111    000000     00112345677899


Q ss_pred             CCEEEEcCCC
Q 018265          115 MDIVIIPAGV  124 (358)
Q Consensus       115 aDiVIi~ag~  124 (358)
                      +|+||.+.|.
T Consensus        79 vDvViEcTG~   88 (171)
T d1cf2o1          79 ADIVIDCTPE   88 (171)
T ss_dssp             CSEEEECCST
T ss_pred             CCEEEEccCC
Confidence            9999998664

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.40  E-value=0.63  Score=36.10  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=24.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~   80 (358)
                      ||+|+|++|.+|+.++..+...+-..=+.-+|.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            899999999999999988877653322334454

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.16  E-value=1.5  Score=34.63  Aligned_cols=73  Identities=19%  Similarity=0.288  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCcHHhhh------CCCCEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIV  118 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------~~aDiV  118 (358)
                      +..+|.|+||+|.||...+..+...+.  +++..+.+..  ....+..... ..+-.. ...|+.+.+      ++.|+|
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~--~~~~l~~~Ga-~~vi~~-~~~~~~~~v~~~t~~~g~d~v   98 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDA--KREMLSRLGV-EYVGDS-RSVDFADEILELTDGYGVDVV   98 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHH--HHHHHHTTCC-SEEEET-TCSTHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccc--cceeeecccc--cccccccccc-cccccC-CccCHHHHHHHHhCCCCEEEE
Confidence            345899999989999999988877776  6666665431  1111222211 222221 234565555      579999


Q ss_pred             EEcCC
Q 018265          119 IIPAG  123 (358)
Q Consensus       119 Ii~ag  123 (358)
                      +-+.|
T Consensus        99 ~d~~g  103 (183)
T d1pqwa_          99 LNSLA  103 (183)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            99875

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.14  E-value=4.6  Score=30.44  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=27.9

Q ss_pred             CCCEEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCC
Q 018265           45 PGFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVV   81 (358)
Q Consensus        45 ~~~KI~IiGa~---G~vG~~~a~~l~~~~~~~el~L~D~~   81 (358)
                      ++..|+||||+   +..|..+...|...+ ..+|+.+...
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~   45 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIK   45 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSS
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccC
Confidence            45699999997   788888888876654 4588998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=84.11  E-value=0.42  Score=40.37  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=30.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..|.|||| |..|...|..+++.+.  ++.|+|.+.
T Consensus         5 ~DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36999999 9999999999999997  899999876

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.92  E-value=1  Score=36.51  Aligned_cols=66  Identities=23%  Similarity=0.301  Sum_probs=44.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEEcC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (358)
                      .+..||+|||= |.-|.+-|+.|..+|+  +|+ +...+ .......-.+. +    +.    .+.+||.+.||+|.++.
T Consensus        14 ik~k~IaViGY-GsQG~AhAlNLrDSG~--~V~-VGLr~gs~s~~~A~~~G-f----~v----~~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          14 IQGKKVAIIGY-GSQGHAHACNLKDSGV--DVT-VGLRSGSATVAKAEAHG-L----KV----ADVKTAVAAADVVMILT   80 (182)
T ss_dssp             HHTSCEEEECC-SHHHHHHHHHHHHTTC--CEE-EECCTTCHHHHHHHHTT-C----EE----ECHHHHHHTCSEEEECS
T ss_pred             HCCCEEEEEee-CcHhHHHHhhhhhcCC--CEE-EEcCCCCccHHHHhhhc-c----cc----ccHHHHhhhcCeeeeec
Confidence            35569999998 9999999999999998  433 34433 22222211222 1    12    23689999999999983

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=83.88  E-value=1.2  Score=34.76  Aligned_cols=70  Identities=20%  Similarity=0.305  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           45 PGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      +..||+++|=.  +.|..+++..+...|.  ++.++-...  . ......+...  ...+..   +.|++++++++|+|.
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~--~~~~~~---~~d~~~av~~aDvvy   75 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELREK--GMKVVE---TTTLEDVIGKLDVLY   75 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHHT--TCCEEE---ESCTHHHHTTCSEEE
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHhh--ccccee---ecCHHHhhccCcEEE
Confidence            35699999973  5688888888877776  888887644  1 2222222222  233433   357899999999887


Q ss_pred             Ec
Q 018265          120 IP  121 (358)
Q Consensus       120 i~  121 (358)
                      .+
T Consensus        76 ~~   77 (157)
T d1ml4a2          76 VT   77 (157)
T ss_dssp             EC
T ss_pred             ee
Confidence            76

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=1.3  Score=35.06  Aligned_cols=74  Identities=14%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhHHHHHhcC--CCCCeEEEEeCCCcHHhhhCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~~~dl~~~--~~~~~v~~~~~t~d~~~al~~aDiVI  119 (358)
                      +..||+++|-...|-.+++..+...|.  ++.++-...  . .....+....  .....+..   +.|+.+++++||+|.
T Consensus         3 ~gl~I~~vGD~~nV~~Sli~~~~~~g~--~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~---~~d~~~~~~~advi~   77 (170)
T d1otha2           3 KGLTLSWIGDGNNILHSIMMSAAKFGM--HLQAATPKGYEPDASVTKLAEQYAKENGTKLLL---TNDPLEAAHGGNVLI   77 (170)
T ss_dssp             TTCEEEEESCSSHHHHHHHTTTGGGTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE---ESCHHHHHTTCSEEE
T ss_pred             CCCEEEEEcCchhHHHHHHHHHHHcCC--EEEEEeccccCCchHHHHHHHHHHhccCCEEEE---EcCHHHHHhhhhhee
Confidence            457999999833333343433444455  888887654  1 1111111111  01234444   368899999999999


Q ss_pred             EcCC
Q 018265          120 IPAG  123 (358)
Q Consensus       120 i~ag  123 (358)
                      ...-
T Consensus        78 ~~~~   81 (170)
T d1otha2          78 TDTW   81 (170)
T ss_dssp             ECCS
T ss_pred             eece
Confidence            8643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.91  E-value=0.54  Score=38.55  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=29.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .-|+|||| |..|.+.|..+++.+.  +++++|...
T Consensus         6 yDviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           6 HDVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            46899998 9999999999999988  999999754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.78  E-value=2.7  Score=33.33  Aligned_cols=74  Identities=15%  Similarity=0.143  Sum_probs=46.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHH---h--hhCCCCEEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLE---D--ALTGMDIVI  119 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~---~--al~~aDiVI  119 (358)
                      .-.|+|+|+ |.+|...+..+...+. .+|+.+|.++ ....+.++.-..   .+.........+   +  .=.++|+||
T Consensus        30 g~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~---~in~~~~~~~~~~~~~~~~g~G~d~vi  104 (176)
T d1d1ta2          30 GSTCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATE---CISPKDSTKPISEVLSEMTGNNVGYTF  104 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred             CCEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcE---EECccccchHHHHHHHHhccccceEEE
Confidence            347999998 9999999998888774 3899999987 334455443211   111000111111   1  126899999


Q ss_pred             EcCCC
Q 018265          120 IPAGV  124 (358)
Q Consensus       120 i~ag~  124 (358)
                      .+.|.
T Consensus       105 ~~~g~  109 (176)
T d1d1ta2         105 EVIGH  109 (176)
T ss_dssp             ECSCC
T ss_pred             EeCCc
Confidence            98764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=82.71  E-value=0.81  Score=33.88  Aligned_cols=36  Identities=14%  Similarity=0.057  Sum_probs=27.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~   82 (358)
                      +.||+|||| |++|.-+|..+... ....++.+++...
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            469999999 99999999766542 2334999998754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.59  E-value=1.5  Score=34.52  Aligned_cols=71  Identities=17%  Similarity=0.098  Sum_probs=46.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhhh------CCCCEE
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIV  118 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------~~aDiV  118 (358)
                      ..+|+|+||+|.+|...+......|.  +++..|.++ ....+.++.   . ..+-.. .+.|+.+.+      ++.|+|
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a-~~vi~~-~~~d~~~~v~~~t~g~g~d~v  101 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---A-WQVINY-REEDLVERLKEITGGKKVRVV  101 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---C-SEEEET-TTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---C-eEEEEC-CCCCHHHHHHHHhCCCCeEEE
Confidence            35899999988899999988888786  888888765 222333332   1 122111 234555544      457888


Q ss_pred             EEcCC
Q 018265          119 IIPAG  123 (358)
Q Consensus       119 Ii~ag  123 (358)
                      +-+.|
T Consensus       102 ~d~~g  106 (179)
T d1qora2         102 YDSVG  106 (179)
T ss_dssp             EECSC
T ss_pred             EeCcc
Confidence            88765

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.40  E-value=0.89  Score=39.06  Aligned_cols=38  Identities=18%  Similarity=0.152  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           43 GSPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        43 ~~~~~KI~IiGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      +.+.+++.|+||+|  -+|..++..|++.|.  +|++.|.+.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~~   44 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVP   44 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            45667999999966  599999999999998  899998754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=82.32  E-value=0.95  Score=37.44  Aligned_cols=36  Identities=31%  Similarity=0.336  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        44 ~~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .+..+|+|-|- |.||+.++..|...|.  .|+.+|++.
T Consensus        25 L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          25 LDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            45568999998 9999999999999886  899999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.26  E-value=0.99  Score=35.36  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCcHHhh----hCCCCEEE
Q 018265           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDA----LTGMDIVI  119 (358)
Q Consensus        45 ~~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~a----l~~aDiVI  119 (358)
                      +..+|+|+|+ |.+|...+..+...|.  +++.+|.++ ....+.++.   ....+. . ...|..+.    ..+.|.+|
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~G---a~~~i~-~-~~~~~~~~~~~~~~g~~~~i   98 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLG---ASLTVN-A-RQEDPVEAIQRDIGGAHGVL   98 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT---CSEEEE-T-TTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccC---cccccc-c-cchhHHHHHHHhhcCCcccc
Confidence            3458999998 9999999988888885  899999875 223333332   111111 1 12333333    34567777


Q ss_pred             EcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 018265          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (358)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  167 (358)
                      +..+.+               +.+.+   .++-..|.+.+++++.|.+
T Consensus        99 ~~~~~~---------------~~~~~---~~~~l~~~G~iv~~G~~~~  128 (166)
T d1llua2          99 VTAVSN---------------SAFGQ---AIGMARRGGTIALVGLPPG  128 (166)
T ss_dssp             ECCSCH---------------HHHHH---HHTTEEEEEEEEECCCCSS
T ss_pred             cccccc---------------hHHHH---HHHHhcCCcEEEEEEecCC
Confidence            765421               11222   3333347899888876543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.22  E-value=0.56  Score=38.29  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=29.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .-|+|||| |+.|.+.|..+.+.|.  +++++|.+.
T Consensus         3 yDvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           3 YDYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            35899998 9999999999999888  899999765

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.74  E-value=0.59  Score=40.03  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~   82 (358)
                      -|+|||| |..|...|..|++. |+  +++++|...
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            5999999 99999999999874 87  999999764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.18  E-value=0.66  Score=36.62  Aligned_cols=30  Identities=20%  Similarity=0.279  Sum_probs=26.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~   80 (358)
                      -|+|||| |..|...|..+.+.+.  +++++|.
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGE   32 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEE
Confidence            5899998 9999999999999888  8888874

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.15  E-value=0.94  Score=33.63  Aligned_cols=36  Identities=17%  Similarity=0.075  Sum_probs=27.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~   82 (358)
                      +.||+|+|| |++|.-+|..+...+ ...++.+++...
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            459999999 999999997665433 223899998755

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.11  E-value=0.54  Score=38.34  Aligned_cols=33  Identities=15%  Similarity=0.077  Sum_probs=29.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      .-|+|||| |..|.+.|..+.+.+.  +++++|...
T Consensus         4 yDvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           4 NDVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            35899998 9999999999999887  899999754

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=80.31  E-value=0.72  Score=36.43  Aligned_cols=37  Identities=27%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        46 ~~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      |.||+|+|++|+||.+...-+.+.+---+|+.+-.+.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            4699999999999999888777654222666655443

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.31  E-value=0.66  Score=42.07  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHh------CCCCcEEEEEeCCC
Q 018265           48 KVAVLGAAGGIGQPLAMLMKI------NPLVSVLHLYDVVN   82 (358)
Q Consensus        48 KI~IiGa~G~vG~~~a~~l~~------~~~~~el~L~D~~~   82 (358)
                      -|+|||| |..|++.|..|++      .|+  +|+|+|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            6999999 9999999999986      677  999999764

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=80.29  E-value=2.2  Score=33.42  Aligned_cols=73  Identities=12%  Similarity=0.115  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCcHHhhhCCCCEEEE
Q 018265           45 PGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (358)
Q Consensus        45 ~~~KI~IiGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (358)
                      +..||+++|=..+  |..+++..+..-+. ..+++.-...  ......+..+.. ...+..   +.|+++|+++||+|..
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~-~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~---~~d~~~a~~~aDvvy~   77 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIAWSL---HSSIEEVMAEVDILYM   77 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHHT-TCCEEE---CSCSTTTGGGCSEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHcCC-CeEEeeccchhhhhHHHHHHHhhh-cccccc---ccCHHHHhCcCceEEe
Confidence            3569999997333  77777777765542 2667765433  222233333222 233443   4678899999999886


Q ss_pred             cC
Q 018265          121 PA  122 (358)
Q Consensus       121 ~a  122 (358)
                      +.
T Consensus        78 ~~   79 (160)
T d1ekxa2          78 TR   79 (160)
T ss_dssp             CC
T ss_pred             ec
Confidence            53

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=0.81  Score=37.69  Aligned_cols=35  Identities=9%  Similarity=0.043  Sum_probs=29.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018265           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (358)
Q Consensus        47 ~KI~IiGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   82 (358)
                      ..++|||| |+.|..+|..|.+.+...+|++++.+.
T Consensus         5 ~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           5 VPFLLIGG-GTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            36899998 999999999998877766899998643