Citrus Sinensis ID: 018270

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcccccEEcccccHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHcccccccccccccccEEcccccHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHcccccccEEEEccccccccccccccccHHHHHHHHHHHcccccccccccccEEEEccccccHHEccccccEEEEEEcccccccEEEcccccEEEEccccccEEEEEEEEHHHHHHHHcHcccccccEEEEEcccccccccccccccHHHHHHHHHHHccccccccccccHHHccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MERYQIWLALGTLTLFFVSALADDVvvltednfekevgqdrgalvefyapwcghckkLAPEYEKLGASFKKAKSVLigkvdcdehkslcskygvqgyptiqwfpkgslepkkyegprsTEALAEYVnneggtnvkiaavpsnvvvltadnfdeivldKSKDVLVEfyapwcghcknlaPTYEKVAAAFTLEDDVVVANLDADKYKDLAekygvsgfptlkffpkgnkdgeeygggrdlEDFVSFInekcgtsrdgkgqltsTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEvlegstarhGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKknilstft
Flexible Loop (DISEMBL)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLcskygvqgyptiqWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAekygvsgfptlkffpkgnKDGEEYGGGRDLEDFVSFINEKcgtsrdgkgqlTSTAGIVASLDALVKEFVAASGDEKKAVFSKIErgvevlegstarhgkiyLKVAKNYMDKGSDYAKKEIDRLQRMLDKsisaakadefvlkknilstft
Low Complexity Region (SEG)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Disordered region (IsUnstruct)
***YQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG***************LAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK**EEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYA**********************FVL*********
Disordered Region (DISOPRED)
***YQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK*YEGPRSTEALAEYVN***************VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC***************IVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Disordered Region (DISEMBL)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Disordered Region (DISPRO)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
P38661	364	Probable protein disulfid	N/A	no	0.997	0.980	0.772	1e-159
O22263	361	Protein disulfide-isomera	yes	no	0.997	0.988	0.773	1e-155
Q942L2	371	Protein disulfide isomera	yes	no	0.938	0.905	0.758	1e-154
Q75M08	366	Protein disulfide isomera	no	no	0.938	0.918	0.755	1e-151
Q86IA3	363	Protein disulfide-isomera	yes	no	0.983	0.969	0.469	5e-87
O13811	359	Protein disulfide-isomera	yes	no	0.966	0.963	0.429	4e-74
Q00216	359	Protein disulfide-isomera	yes	no	0.927	0.924	0.432	8e-68
Q92249	369	Protein disulfide-isomera	N/A	no	0.916	0.888	0.397	4e-62
Q63081	440	Protein disulfide-isomera	yes	no	0.645	0.525	0.422	8e-44
Q15084	440	Protein disulfide-isomera	yes	no	0.650	0.529	0.403	1e-43

>sp|P38661|PDIA6_MEDSA Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1

 Score =  559 bits (1441), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/361 (77%), Positives = 313/361 (86%), Gaps = 4/361 (1%)

Query: 1   MERYQIW----LALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCK 56
           ME +QIW    LA     + FVS  ADDVVVLTE+NFEKEVG D+GALVEFYAPWCGHCK
Sbjct: 3   MEMHQIWSRIALASFAFAILFVSVSADDVVVLTEENFEKEVGHDKGALVEFYAPWCGHCK 62

Query: 57  KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP 116
           KLAPEYEKL  SFKKAKSVLI KVDCDEHKS+CSKYGV GYPTIQWFPKGSLEPKK+EGP
Sbjct: 63  KLAPEYEKLPNSFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKFEGP 122

Query: 117 RSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKN 176
           R+ E+LAE+VN EGGTNVKIA  PS+VVVLT + F+E+VLD +KDVLVEFYAPWCGHCK+
Sbjct: 123 RTAESLAEFVNTEGGTNVKIATAPSHVVVLTPETFNEVVLDGTKDVLVEFYAPWCGHCKS 182

Query: 177 LAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 236
           LAP YEKVAA F  EDDVV+ANLDADKY+DLAEKY VSGFPTLKFFPKGNK GE+YGGGR
Sbjct: 183 LAPIYEKVAAVFKSEDDVVIANLDADKYRDLAEKYDVSGFPTLKFFPKGNKAGEDYGGGR 242

Query: 237 DLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVE 296
           DL+DFV+FINEK GTSRD KGQLTS AGIV  LD LVKEFVAA+ +EKKAVF++IE  V+
Sbjct: 243 DLDDFVAFINEKSGTSRDAKGQLTSEAGIVEDLDELVKEFVAANDEEKKAVFARIEEEVK 302

Query: 297 VLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILST 356
            LEGS +R+GKIYLKV+K Y++KGSDYAK EI RL+R+L+KSIS AKADE  LKKNILST
Sbjct: 303 KLEGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILST 362

Query: 357 F 357
           +
Sbjct: 363 Y 363

Medicago sativa (taxid: 3879)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|O22263|PDI21_ARATH Protein disulfide-isomerase like 2-1 OS=Arabidopsis thaliana GN=PDIL2-1 PE=1 SV=1

 Score =  546 bits (1408), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/357 (77%), Positives = 307/357 (85%)

Query: 1   MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAP 60
           M + QIW     L L  VSA+ADDVVVLT+D+FEKEVG+D+GALVEFYAPWCGHCKKLAP
Sbjct: 1   MAKSQIWFGFALLALLLVSAVADDVVVLTDDSFEKEVGKDKGALVEFYAPWCGHCKKLAP 60

Query: 61  EYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 120
           EYEKLGASFKKAKSVLI KVDCDE KS+C+KYGV GYPTIQWFPKGSLEP+KYEGPR+ E
Sbjct: 61  EYEKLGASFKKAKSVLIAKVDCDEQKSVCTKYGVSGYPTIQWFPKGSLEPQKYEGPRNAE 120

Query: 121 ALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPT 180
           ALAEYVN EGGTNVK+AAVP NVVVLT DNFDEIVLD++KDVLVEFYAPWCGHCK+LAPT
Sbjct: 121 ALAEYVNKEGGTNVKLAAVPQNVVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPT 180

Query: 181 YEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED 240
           YEKVA  F  E+ VV+ANLDAD +K L EKYGVSGFPTLKFFPK NK G +Y GGRDL+D
Sbjct: 181 YEKVATVFKQEEGVVIANLDADAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGRDLDD 240

Query: 241 FVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEG 300
           FVSFINEK GTSRD KGQLTS AGIV SLDALVKE VAAS DEKKAV S+IE     L+G
Sbjct: 241 FVSFINEKSGTSRDSKGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKG 300

Query: 301 STARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           ST R+GK+YLK+AK+Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct: 301 STTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357

Protein disulfide isomerase that may be required for proper pollen development, ovule fertilization and embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q942L2|PDI22_ORYSJ Protein disulfide isomerase-like 2-2 OS=Oryza sativa subsp. japonica GN=PDIL2-2 PE=2 SV=1

 Score =  545 bits (1405), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 255/336 (75%), Positives = 294/336 (87%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
           DDVV LTE  FEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSV I KVDC
Sbjct: 35  DDVVALTESTFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVFIAKVDC 94

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSN 142
           DEHKS+CSKYGV GYPTIQWFPKGSLEPKKYEG RS EALAE+VN EGGTNVK+A +PS+
Sbjct: 95  DEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGQRSAEALAEFVNTEGGTNVKLATIPSS 154

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           VVVL  DNFD IVLD++KD+LVEFYAPWCGHCK+LAP YEK+A+ + L+D VV+ANLDAD
Sbjct: 155 VVVLGPDNFDSIVLDENKDILVEFYAPWCGHCKHLAPIYEKLASVYKLDDGVVIANLDAD 214

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTST 262
           K+KDLAEKYGVSG+PTLKFFPKGNK GE+Y GGR+L+DFV FINEKCGTSRD KGQLTS 
Sbjct: 215 KHKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGRELDDFVKFINEKCGTSRDTKGQLTSE 274

Query: 263 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 322
           AG +ASLDAL KEF+ A+ D++K + S +E  V  L GS A+HGK+Y+ +AK  +DKG D
Sbjct: 275 AGRIASLDALAKEFLGAANDKRKEILSNMEEEVVKLSGSAAKHGKVYIAIAKKILDKGHD 334

Query: 323 YAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT 358
           Y KKE +RL+RML+KSIS +KADEF++KKN+LSTF+
Sbjct: 335 YTKKETERLERMLEKSISPSKADEFIIKKNVLSTFS 370

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q75M08|PDI21_ORYSJ Protein disulfide isomerase-like 2-1 OS=Oryza sativa subsp. japonica GN=PDIL2-1 PE=2 SV=2

 Score =  533 bits (1374), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/336 (75%), Positives = 289/336 (86%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
           DDV+ LTE  FEKEVGQDR ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI KVDC
Sbjct: 30  DDVLALTESTFEKEVGQDRAALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDC 89

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSN 142
           DEHKS+CSKYGV GYPTIQWFPKGSLEPKKYEG R+ EALAEYVN+E  TNVKIAAVPS+
Sbjct: 90  DEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGQRTAEALAEYVNSEAATNVKIAAVPSS 149

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           VVVLT + FD +VLD++KDVLVEFYAPWCGHCK+LAP YEK+A+ +  ++ VV+ANLDAD
Sbjct: 150 VVVLTPETFDSVVLDETKDVLVEFYAPWCGHCKHLAPIYEKLASVYKQDEGVVIANLDAD 209

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTST 262
           K+  LAEKYGVSGFPTLKFFPKGNK GE+Y GGR+L+DFV FINEKCGTSRD KGQLTS 
Sbjct: 210 KHTALAEKYGVSGFPTLKFFPKGNKAGEDYDGGRELDDFVKFINEKCGTSRDSKGQLTSE 269

Query: 263 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 322
           AGIV SL  LVKEF+ A+ D++K   SK+E  V  L G  A++GKIY+  AK  M+KGS+
Sbjct: 270 AGIVESLAPLVKEFLGAANDKRKEALSKMEEDVAKLTGPAAKYGKIYVNSAKKIMEKGSE 329

Query: 323 YAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT 358
           Y KKE +RLQRML+KSIS +KADEFV+KKNILSTF+
Sbjct: 330 YTKKESERLQRMLEKSISPSKADEFVIKKNILSTFS 365

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q86IA3|PDI1_DICDI Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2

 Score =  321 bits (823), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 169/360 (46%), Positives = 229/360 (63%), Gaps = 8/360 (2%)

Query: 5   QIWLALGTLTLFFVSALA--DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY 62
           +I L +  + L FV+  +   +VVVL+ DNF+  V   +   V+FYAPWCGHCKKLAP++
Sbjct: 2   KILLFVTLIALAFVALCSAEGNVVVLSPDNFDTVVDGSKTVFVKFYAPWCGHCKKLAPDF 61

Query: 63  EKLGASFKKAKS-VLIGKVDCDE--HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 119
           E L  +F    + V+I KVDCD+  +K+LCSKY V GYPT++ F K S   K Y G RS 
Sbjct: 62  EILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDK-STTAKDYNGARSV 120

Query: 120 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP 179
           + L  Y+NN   TNVK+   PSNVV L+  NFD +VLDKSK+VLVEFYAPWCGHCK L P
Sbjct: 121 DELLTYINNHAKTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWCGHCKKLMP 180

Query: 180 TYEKVAAAFTLEDDVVVANLDADKY--KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
            YE +   +  E DVV+A +D D    K +  KYGV+GFPTLK+F K +KDGE+Y  GRD
Sbjct: 181 DYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRD 240

Query: 238 LEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEV 297
           L+ F+++IN++ G +R   G+L   AG V  LD +  EF+AA+ + +K +  K +  V+ 
Sbjct: 241 LDTFINYINKQAGVNRVKGGKLAVGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDS 300

Query: 298 LEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           L       G  Y+KV K   +K  D+   EI R+ +++  S+S  KADEF  K NIL +F
Sbjct: 301 LPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESF 360

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|O13811|PDI2_SCHPO Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.14c PE=3 SV=1

 Score =  278 bits (711), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 153/356 (42%), Positives = 214/356 (60%), Gaps = 10/356 (2%)

Query: 8   LALGTLTLFFVSAL--ADDVVVLTEDN-FEKEV-GQDRGALVEFYAPWCGHCKKLAPEYE 63
           L L +  +F + AL  A  VV L   N  E  +    +GAL+EFYA WCGHCK LAP YE
Sbjct: 3   LPLLSFVIFALFALVFASGVVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYE 62

Query: 64  KLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 123
           +LGA F+    VLIGK+D D H  +  KY + G+PT+ WFP    EP +Y   R  ++L 
Sbjct: 63  ELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSLT 122

Query: 124 EYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEK 183
           ++V+ + G   +   +PSNVV L + NFD++V+D  KDVLVEFYA WCG+CK LAPTYE 
Sbjct: 123 QFVSEKTGIKKRKIVLPSNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYET 182

Query: 184 VAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE-YGGGRDLEDFV 242
           +   F  E +V +  ++AD + D+   + V+ FPT+KFFPK +KD  E Y G R LE  +
Sbjct: 183 LGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLI 242

Query: 243 SFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGST 302
            +IN+K GT R   G L STAG + + D    EF+  S   K+ V  K+++    LE S+
Sbjct: 243 EYINKKSGTQRSPDGTLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQL--ALEDSS 300

Query: 303 ARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRML-DKSISAAKADEFVLKKNILSTF 357
            R  K Y KV +  ++   ++  KE  RL ++L  KSI+ A AD+F  + NIL++F
Sbjct: 301 -RWTKYYKKVFEKILN-DENWVHKEAKRLSKLLRQKSIALASADDFKTRLNILNSF 354

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q00216|TIGA_ASPNG Protein disulfide-isomerase tigA OS=Aspergillus niger GN=tigA PE=2 SV=1

 Score =  257 bits (657), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 151/349 (43%), Positives = 211/349 (60%), Gaps = 17/349 (4%)

Query: 15  LFFVSALADDVVVLTEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAK 73
           L   SA+   VV L   NF+  V +  + ALVEF+APWCGHCK LAP YE+LG +F  A 
Sbjct: 11  LGLASAVTAAVVDLVPKNFDDVVLKSGKPALVEFFAPWCGHCKNLAPVYEELGQAFAHAS 70

Query: 74  S-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT 132
             V +GKVD DEH+ L  K+GVQG+PT++WF   S EP+ Y+G R  E+L+ +++ + G 
Sbjct: 71  DKVTVGKVDADEHRDLGRKFGVQGFPTLKWFDGKSDEPEDYKGGRDLESLSSFISEKTGV 130

Query: 133 NVK-IAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE 191
             +     PS V +L    F   V     DVLV F APWCGHCKNLAPT+E +A  F LE
Sbjct: 131 KPRGPKKEPSKVEMLNDATFKGAV-GGDNDVLVAFTAPWCGHCKNLAPTWEALANDFVLE 189

Query: 192 DDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 249
            +VV+A +DAD    K  A + GVSG+PT+KFFPKG+ +   Y G R  + F+ F+NEK 
Sbjct: 190 PNVVIAKVDADAENGKATAREQGVSGYPTIKFFPKGSTESVPYEGARSEQAFIDFLNEKT 249

Query: 250 GTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIY 309
           GT R   G L + AG +ASLD L+    AA       + + +++    L+   A++   Y
Sbjct: 250 GTHRTVGGGLDTKAGTIASLDELIASTSAAD------LAAAVKKAATELKDKYAQY---Y 300

Query: 310 LKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAA-KADEFVLKKNILSTF 357
           +KVA + + + ++YA KE+ RL+++L K  SA  K D+ + + NIL  F
Sbjct: 301 VKVA-DKLSQNAEYAAKELARLEKILAKGGSAPEKVDDLISRSNILRKF 348

Aspergillus niger (taxid: 5061)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q92249|ERP38_NEUCR Protein disulfide-isomerase erp38 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erp38 PE=2 SV=2

 Score =  238 bits (608), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 133/335 (39%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 28  LTEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAK-SVLIGKVDCDEH 85
           L   NF+  V +  +  LVEF+APWCGHCK LAP YE+L  + + AK  V I KVD D  
Sbjct: 25  LIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAE 84

Query: 86  KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVV 145
           ++L  ++GVQG+PT+++F   S +P  Y+G R  ++L+ ++  + G   +      ++V 
Sbjct: 85  RALGKRFGVQGFPTLKFFDGKSEQPVDYKGGRDLDSLSNFIAEKTGVKARKKGSAPSLVN 144

Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY- 204
           +  D   +  +   K+VLV F APWCGHCKNLAPT+EK+AA F  + ++ +A +DAD   
Sbjct: 145 ILNDATIKGAIGGDKNVLVAFTAPWCGHCKNLAPTWEKLAATFASDPEITIAKVDADAPT 204

Query: 205 -KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTA 263
            K  A +YGVSGFPT+KFFPKG+   E+Y GGR   D V F+NEK GT R   G L + A
Sbjct: 205 GKKSAAEYGVSGFPTIKFFPKGSTTPEDYNGGRSEADLVKFLNEKAGTHRTPGGGLDTVA 264

Query: 264 GIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDY 323
           G +A+LD +V ++   +    +      E    +   +  ++   YL+V  + + K   Y
Sbjct: 265 GTIAALDEIVAKYTGGA-SLAEVAEEAKEAVKSLKNSAELKYADYYLRVL-DKLSKSEGY 322

Query: 324 AKKEIDRLQRMLDK-SISAAKADEFVLKKNILSTF 357
           A KE  RL+ +L K  ++ AK DE  +K N+L  F
Sbjct: 323 ATKEFARLEGILKKGGLAPAKVDELTVKVNVLRKF 357

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q63081|PDIA6_RAT Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2

 Score =  177 bits (450), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/263 (42%), Positives = 152/263 (57%), Gaps = 32/263 (12%)

Query: 8   LALGTLTLFF-VSAL---ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEY 62
           L L + T F  VSAL   +DDV+ LT  NF +EV Q D   LVEFYAPWCGHC++L PE+
Sbjct: 6   LGLVSCTFFLAVSALYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEW 65

Query: 63  EKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122
           +K  ++ K    V +G V+ D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+
Sbjct: 66  KKAASALKDV--VKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAI 123

Query: 123 AEYVNNEGGTNVKI------------------AAVPSNVVVLTADNFDEIVLDKSKDVLV 164
            +   +     VK                   ++   +VV LT D FD+ VLD     +V
Sbjct: 124 VDAALSALRQLVKDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSEDVWMV 183

Query: 165 EFYAPWCGHCKNLAPTYEKVAAAFTLEDD----VVVANLDADKYKDLAEKYGVSGFPTLK 220
           EFYAPWCGHCKNL P +   AAA  +++     V +A +DA   + LA +YG+ GFPT+K
Sbjct: 184 EFYAPWCGHCKNLEPEW--AAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIK 241

Query: 221 FFPKGNKDGEEYGGGRDLEDFVS 243
            F KG +   +Y GGR   D VS
Sbjct: 242 IFQKG-ESPVDYDGGRTRSDIVS 263

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q15084|PDIA6_HUMAN Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 145/263 (55%), Gaps = 30/263 (11%)

Query: 8   LALGTLTLFFVSAL------ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAP 60
           L LG ++  F  A+      +DDV+ LT  NF +EV Q D   LVEFYAPWCGHC++L P
Sbjct: 4   LVLGLVSCTFFLAVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTP 63

Query: 61  EYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 120
           E++K   + K    V +G VD D+H SL  +YGVQG+PTI+ F      P+ Y+G R+ E
Sbjct: 64  EWKKAATALKDV--VKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGE 121

Query: 121 ALAEYVNNEGGTNVKI------------------AAVPSNVVVLTADNFDEIVLDKSKDV 162
           A+ +   +     VK                   ++   +V+ LT D+FD+ VLD     
Sbjct: 122 AIVDAALSALRQLVKDRLGGRSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDVW 181

Query: 163 LVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 220
           +VEFYAPWCGHCKNL P +   A+      +  V +A +DA   + LA +YG+ GFPT+K
Sbjct: 182 MVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIK 241

Query: 221 FFPKGNKDGEEYGGGRDLEDFVS 243
            F KG     +Y GGR   D VS
Sbjct: 242 IFQKGESP-VDYDGGRTRSDIVS 263

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
255548505	359	protein disulfide isomerase, putative [R	0.997	0.994	0.849	1e-177
224068456	359	predicted protein [Populus trichocarpa]	0.997	0.994	0.840	1e-173
192910920	363	disulfide-isomerase precursor-like prote	0.997	0.983	0.806	1e-172
351724739	364	protein disulfide isomerase-like protein	0.997	0.980	0.817	1e-172
255645357	364	unknown [Glycine max]	0.997	0.980	0.814	1e-171
388513087	360	unknown [Lotus japonicus]	1.0	0.994	0.808	1e-170
341575453	359	protein disulfide isomerase [Gossypium h	0.991	0.988	0.836	1e-169
147821099	357	hypothetical protein VITISV_038267 [Viti	0.983	0.985	0.813	1e-168
225450626	357	PREDICTED: probable protein disulfide-is	0.983	0.985	0.813	1e-168
449436445	361	PREDICTED: probable protein disulfide-is	1.0	0.991	0.784	1e-168

>gi|255548505|ref|XP_002515309.1| protein disulfide isomerase, putative [Ricinus communis] gi|223545789|gb|EEF47293.1| protein disulfide isomerase, putative [Ricinus communis]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 304/358 (84%), Positives = 330/358 (92%), Gaps = 1/358 (0%)

Query: 1   MERY-QIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLA 59
           M++Y QIW+A+ ++ L  VSA ADDVVVLTEDNFEKEVGQDRGAL+EFYAPWCGHCKKLA
Sbjct: 1   MDKYKQIWIAICSVALLAVSASADDVVVLTEDNFEKEVGQDRGALIEFYAPWCGHCKKLA 60

Query: 60  PEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 119
           PEYEKLG SFKKAKSVLIGKVDCDEHKSLCSKYGV GYPT+QWFPKGSLEPKKYEGPR+ 
Sbjct: 61  PEYEKLGTSFKKAKSVLIGKVDCDEHKSLCSKYGVSGYPTVQWFPKGSLEPKKYEGPRTA 120

Query: 120 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP 179
           E+LAE+VN+EGGTNVKIAA PS+VVVLTADNF+E+VLD+SKDVLVEFYAPWCGHCKNLAP
Sbjct: 121 ESLAEFVNSEGGTNVKIAAAPSSVVVLTADNFNEVVLDESKDVLVEFYAPWCGHCKNLAP 180

Query: 180 TYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE 239
           TYEKVAAAF  EDDVV+ANLDADKY+D+ EKYGVSGFPTLKFFPKGNK GE+Y GGRDLE
Sbjct: 181 TYEKVAAAFKSEDDVVIANLDADKYRDIGEKYGVSGFPTLKFFPKGNKAGEDYEGGRDLE 240

Query: 240 DFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLE 299
           DFV+FINEK GTSRD KGQLTS AGIV  LDALVKEFVAAS DEKKAVFS++E  VE LE
Sbjct: 241 DFVTFINEKSGTSRDAKGQLTSKAGIVEPLDALVKEFVAASNDEKKAVFSRLEEEVEKLE 300

Query: 300 GSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           GSTAR+GKIYLK AKN M+KGSDYAKKEI+RLQRMLDKSIS AKADEF LKKNILSTF
Sbjct: 301 GSTARYGKIYLKSAKNCMEKGSDYAKKEIERLQRMLDKSISPAKADEFTLKKNILSTF 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068456|ref|XP_002302750.1| predicted protein [Populus trichocarpa] gi|222844476|gb|EEE82023.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 301/358 (84%), Positives = 325/358 (90%), Gaps = 1/358 (0%)

Query: 1   MER-YQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLA 59
           MER  QIW A GT+ L  VSALADDVVVLTEDNFEKEVGQD+GALVEFYAPWCGHCKKLA
Sbjct: 1   MERCNQIWYAFGTMALLAVSALADDVVVLTEDNFEKEVGQDKGALVEFYAPWCGHCKKLA 60

Query: 60  PEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 119
           PEYEKLG+SFKKAK+VLIGKVDCDEHK +CSKYGV GYPT+QWFPKGSLEPKKYEGPR+ 
Sbjct: 61  PEYEKLGSSFKKAKAVLIGKVDCDEHKGVCSKYGVSGYPTLQWFPKGSLEPKKYEGPRTA 120

Query: 120 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP 179
           EALAE+VNNEGG+NVKIAAV S+VVVLTADNF++IVLD++KDVLVEFYAPWCGHCKNLAP
Sbjct: 121 EALAEFVNNEGGSNVKIAAVTSSVVVLTADNFNDIVLDENKDVLVEFYAPWCGHCKNLAP 180

Query: 180 TYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE 239
            YEKVA AF  E+DVVVANL+ADKY+DLAEKYGVSGFPTLKFFPKGNK GEEY GGRDL+
Sbjct: 181 IYEKVATAFKSEEDVVVANLEADKYRDLAEKYGVSGFPTLKFFPKGNKAGEEYEGGRDLD 240

Query: 240 DFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLE 299
           DFV+FINEK GTSRDGKGQLTS AGIV SLDALVKEFVAA  DEKKAVFS+IE  VE L+
Sbjct: 241 DFVAFINEKAGTSRDGKGQLTSKAGIVESLDALVKEFVAAGDDEKKAVFSRIEEEVEKLK 300

Query: 300 GSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           GSTARHGKIYLK AK  M KG+ YAK EI+RLQRML+KSIS AKADEF LKKNILSTF
Sbjct: 301 GSTARHGKIYLKAAKTCMVKGAGYAKNEIERLQRMLEKSISPAKADEFTLKKNILSTF 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910920|gb|ACF06568.1| disulfide-isomerase precursor-like protein [Elaeis guineensis]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 291/361 (80%), Positives = 330/361 (91%), Gaps = 4/361 (1%)

Query: 1   MERYQIWLALGTLTL----FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCK 56
           MER QIW + GTLTL     FVSA+ADDV VLTE NFE+EVGQDRGALVEFYAPWCGHCK
Sbjct: 1   MERSQIWFSFGTLTLILSLLFVSAVADDVFVLTEANFEEEVGQDRGALVEFYAPWCGHCK 60

Query: 57  KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP 116
           KLAPEYEKLG+S+KKAKS+LIGKVDCDEHKSLCSKYGV GYPTIQWF KGSLEPKKYEGP
Sbjct: 61  KLAPEYEKLGSSYKKAKSILIGKVDCDEHKSLCSKYGVSGYPTIQWFAKGSLEPKKYEGP 120

Query: 117 RSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKN 176
           R+ EALAE+VNNEGGTNVK+A VPS+VVVLTADNF+E+VLD++KDVLVEFYAPWCGHCKN
Sbjct: 121 RTAEALAEFVNNEGGTNVKVATVPSSVVVLTADNFNEVVLDETKDVLVEFYAPWCGHCKN 180

Query: 177 LAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 236
           LAPTYEKVA A+ LE+DVV+AN+DADKYKDLAEKYGVSG+PTLKFFPKGNK GE+Y GGR
Sbjct: 181 LAPTYEKVATAYKLEEDVVIANIDADKYKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGR 240

Query: 237 DLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVE 296
           DL++FV FINEKCGTSRD KG+L+S AGI+ASLDALVKEFV+AS DE+KA+ S++E  VE
Sbjct: 241 DLDEFVKFINEKCGTSRDTKGKLSSQAGIIASLDALVKEFVSASNDERKAIASQMEEEVE 300

Query: 297 VLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILST 356
            L+GS+AR+GK YLK AK+ +DKGSDYAK EI+RLQRMLDKSIS +KADEF++KKNILST
Sbjct: 301 KLKGSSARYGKTYLKAAKSCIDKGSDYAKNEIERLQRMLDKSISPSKADEFIIKKNILST 360

Query: 357 F 357
           F
Sbjct: 361 F 361

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724739|ref|NP_001236300.1| protein disulfide isomerase-like protein precursor [Glycine max] gi|49615095|dbj|BAD24714.2| protein disulfide isomerase-like protein [Glycine max]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/362 (81%), Positives = 325/362 (89%), Gaps = 5/362 (1%)

Query: 1   MERYQIW---LALGTL--TLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHC 55
           ME YQIW   +ALG L   L F+SA ADDVVVL+EDNFEKEVGQDRGALVEFYAPWCGHC
Sbjct: 1   MEMYQIWSRRIALGALAFVLLFLSASADDVVVLSEDNFEKEVGQDRGALVEFYAPWCGHC 60

Query: 56  KKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG 115
           KKLAPEYEKLG+SFKKAKSVLIGKVDCDEHKSLCSKYGV GYPTIQWFPKGSLEPKKYEG
Sbjct: 61  KKLAPEYEKLGSSFKKAKSVLIGKVDCDEHKSLCSKYGVSGYPTIQWFPKGSLEPKKYEG 120

Query: 116 PRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCK 175
           PR+ ++LAE+VN EGGTNVKIA  PSNVVVLT++NF+E+VLD++KDVLVEFYAPWCGHCK
Sbjct: 121 PRTADSLAEFVNTEGGTNVKIATAPSNVVVLTSENFNEVVLDETKDVLVEFYAPWCGHCK 180

Query: 176 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
           +LAPTYEKVA AF LE+DVV+ANLDADKYKDLAEKY VSGFPTLKFFPKGNK GEEYGGG
Sbjct: 181 SLAPTYEKVATAFKLEEDVVIANLDADKYKDLAEKYDVSGFPTLKFFPKGNKAGEEYGGG 240

Query: 236 RDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGV 295
           RDL+DFV+FINEK GTSRD KGQLTS AGIV SLD LVKEFVAAS +EKK VF+++E  V
Sbjct: 241 RDLDDFVAFINEKSGTSRDVKGQLTSQAGIVESLDVLVKEFVAASDEEKKFVFTRMEEEV 300

Query: 296 EVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILS 355
           E L+GS +RHGKIYLK AKNY++KGSDYAK EI RLQR+LDKSIS AK DE  LKKNILS
Sbjct: 301 EKLKGSASRHGKIYLKAAKNYLEKGSDYAKNEIQRLQRILDKSISPAKTDELTLKKNILS 360

Query: 356 TF 357
           T+
Sbjct: 361 TY 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645357|gb|ACU23175.1| unknown [Glycine max]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 295/362 (81%), Positives = 324/362 (89%), Gaps = 5/362 (1%)

Query: 1   MERYQIW---LALGTL--TLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHC 55
           ME YQIW   +ALG     L F+SA ADDVVVL+EDNFEKEVGQDRGALVEFYAPWCGHC
Sbjct: 1   MEMYQIWSRRIALGAFAFVLLFLSASADDVVVLSEDNFEKEVGQDRGALVEFYAPWCGHC 60

Query: 56  KKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG 115
           KKLAPEYEKLG+SFKKAKSVLIGKVDCDEHKSLCSKYGV GYPTIQWFPKGSLEPKKYEG
Sbjct: 61  KKLAPEYEKLGSSFKKAKSVLIGKVDCDEHKSLCSKYGVSGYPTIQWFPKGSLEPKKYEG 120

Query: 116 PRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCK 175
           PR+ ++LAE+VN EGGTNVKIA  PSNVVVLT++NF+E+VLD++KDVLVEFYAPWCGHCK
Sbjct: 121 PRTADSLAEFVNTEGGTNVKIATAPSNVVVLTSENFNEVVLDETKDVLVEFYAPWCGHCK 180

Query: 176 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
           +LAPTYEKVA AF LE+DVV+ANLDADKYKDLAEKY VSGFPTLKFFPKGNK GEEYGGG
Sbjct: 181 SLAPTYEKVATAFKLEEDVVIANLDADKYKDLAEKYDVSGFPTLKFFPKGNKAGEEYGGG 240

Query: 236 RDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGV 295
           RDL+DFV+FINEK GTSRD KGQLTS AGIV SLD LVKEFVAAS +EKK VF+++E  V
Sbjct: 241 RDLDDFVAFINEKSGTSRDVKGQLTSQAGIVESLDVLVKEFVAASDEEKKFVFTRMEEEV 300

Query: 296 EVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILS 355
           E L+G  +RHGKIYLK AKNY++KGSDYAK EI RLQR+LDKSIS AKADE  LKKNILS
Sbjct: 301 EKLKGFASRHGKIYLKAAKNYLEKGSDYAKNEIQRLQRILDKSISPAKADELTLKKNILS 360

Query: 356 TF 357
           T+
Sbjct: 361 TY 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513087|gb|AFK44605.1| unknown [Lotus japonicus]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 291/360 (80%), Positives = 322/360 (89%), Gaps = 2/360 (0%)

Query: 1   MERYQIWLALGTLT--LFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKL 58
           ME+YQIW+A G L   L  V+A ADDVVVL+EDNFEKEVGQD+GALVEFYAPWCGHCKKL
Sbjct: 1   MEKYQIWIAFGALAVALLSVTASADDVVVLSEDNFEKEVGQDKGALVEFYAPWCGHCKKL 60

Query: 59  APEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 118
           APEYEKLG SFKKAKSVLI KVDCDEHKS+CSKYGV GYPT+QWFPKGSLEPKKYEGPR+
Sbjct: 61  APEYEKLGGSFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTLQWFPKGSLEPKKYEGPRT 120

Query: 119 TEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLA 178
            EALAE+VN EGGTNVKIA  PS+VVVLTA+NF+E+VLD++KDVLVEFYAPWCGHCK+LA
Sbjct: 121 AEALAEFVNTEGGTNVKIATAPSSVVVLTAENFNEVVLDETKDVLVEFYAPWCGHCKSLA 180

Query: 179 PTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 238
           PTYEKVAAAF L+ DVV+ANLDADKY+DLAEKY VSGFPTLKFFPKGNK GEEYGGGRDL
Sbjct: 181 PTYEKVAAAFKLDGDVVIANLDADKYRDLAEKYEVSGFPTLKFFPKGNKAGEEYGGGRDL 240

Query: 239 EDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVL 298
           +DFV+FINEK GTSRDG GQLTS AG+V SLD LVKEFVAASG+EKKAVFS+IE  V  L
Sbjct: 241 DDFVAFINEKSGTSRDGNGQLTSKAGLVESLDVLVKEFVAASGEEKKAVFSRIEEEVGKL 300

Query: 299 EGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT 358
           +GS ARHGKIYLK AKN+++KGSDYA  EI RL+R+L KSIS AKADEF LKKNILS + 
Sbjct: 301 QGSAARHGKIYLKAAKNHLEKGSDYAMNEIQRLERILAKSISPAKADEFTLKKNILSAYA 360

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341575453|gb|AEK80406.1| protein disulfide isomerase [Gossypium hirsutum]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 297/355 (83%), Positives = 321/355 (90%)

Query: 3   RYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY 62
           + QI LA GTL L   SALADDVVVLTE NF+KEVGQDRG L+EFYAPWCGHCKKLAPEY
Sbjct: 2   KSQICLAFGTLALLLASALADDVVVLTEANFDKEVGQDRGVLIEFYAPWCGHCKKLAPEY 61

Query: 63  EKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122
           EKLGA+FKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT+QWFPKGSLEPKKYEG  + EA 
Sbjct: 62  EKLGATFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTVQWFPKGSLEPKKYEGTSTAEAP 121

Query: 123 AEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYE 182
            E+VN EGGTNVKIA +PSNV VL ADNFDEIVLD++KDVLVEFYAPWCGHCKNLAPTYE
Sbjct: 122 VEFVNTEGGTNVKIATLPSNVAVLNADNFDEIVLDETKDVLVEFYAPWCGHCKNLAPTYE 181

Query: 183 KVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 242
           KVA AF  E+DVV+ANLDADKY+DLAEKYG+SGFPTLKFFPKGNK GE+Y GGRDL+DFV
Sbjct: 182 KVATAFKSEEDVVIANLDADKYRDLAEKYGISGFPTLKFFPKGNKAGEDYDGGRDLDDFV 241

Query: 243 SFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGST 302
           SFINEKCGTSRD KGQLTSTAGI++SLDALVKEFVAAS DEKK VFSKIE  VE L+GST
Sbjct: 242 SFINEKCGTSRDAKGQLTSTAGILSSLDALVKEFVAASADEKKVVFSKIEEEVEKLKGST 301

Query: 303 ARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           ARHGKIYLK AK+ ++KG+DY KKEI+RLQRMLDKSIS AKADEF LKKNILSTF
Sbjct: 302 ARHGKIYLKAAKSCLEKGADYPKKEIERLQRMLDKSISPAKADEFTLKKNILSTF 356

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821099|emb|CAN70962.1| hypothetical protein VITISV_038267 [Vitis vinifera]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/354 (81%), Positives = 319/354 (90%), Gaps = 2/354 (0%)

Query: 6   IWLALGTLTLF--FVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYE 63
           IW AL TL L   F +  ADDVVVLTE NFE+E+G+DR ALVEFYAPWCGHCKKLAPEYE
Sbjct: 3   IWWALQTLALLLVFTAVSADDVVVLTEANFEQEIGKDRSALVEFYAPWCGHCKKLAPEYE 62

Query: 64  KLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 123
           KLGASFKKAKSVLIGKVDCDEHKS+CSKYGV GYPTIQWFPKGSLEPKKYEG RS EALA
Sbjct: 63  KLGASFKKAKSVLIGKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGARSAEALA 122

Query: 124 EYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEK 183
           E+VNNEGGTNVKIAAVPSNVVVLT+D+FDE+VL++ KDVLVEFYAPWCGHCK+LAP YEK
Sbjct: 123 EFVNNEGGTNVKIAAVPSNVVVLTSDSFDEVVLNEKKDVLVEFYAPWCGHCKSLAPIYEK 182

Query: 184 VAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 243
           VA AF  E DVV+ANLDADKYKDLAEKYGVSG+PTLKFFPKGNK GE+Y GGRDLEDFV+
Sbjct: 183 VATAFKSEGDVVIANLDADKYKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGRDLEDFVT 242

Query: 244 FINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTA 303
           F+NEKCGTSRDGKGQLTS AG VASLD+LVKEF++AS DEKKAVF++IE  VE LEGS A
Sbjct: 243 FVNEKCGTSRDGKGQLTSKAGTVASLDSLVKEFISASDDEKKAVFARIEEEVEKLEGSAA 302

Query: 304 RHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           R+GKIY+K AK+ + KG+DYAK EI RL+RML+KSI+ AKADEF+LKKNILSTF
Sbjct: 303 RYGKIYVKAAKSSLQKGADYAKNEIQRLERMLEKSINQAKADEFILKKNILSTF 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450626|ref|XP_002282603.1| PREDICTED: probable protein disulfide-isomerase A6 isoform 1 [Vitis vinifera] gi|296089758|emb|CBI39577.3| unnamed protein product [Vitis vinifera]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/354 (81%), Positives = 319/354 (90%), Gaps = 2/354 (0%)

Query: 6   IWLALGTLTLF--FVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYE 63
           IW AL TL L   F +  ADDVVVLTE NFE+E+G+DR ALVEFYAPWCGHCKKLAPEYE
Sbjct: 3   IWWALQTLALLLVFTAVSADDVVVLTEANFEQEIGKDRSALVEFYAPWCGHCKKLAPEYE 62

Query: 64  KLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 123
           KLGASFKKAKSVLIGKVDCDEHKS+CSKYGV GYPTIQWFPKGSLEPKKYEG RS EALA
Sbjct: 63  KLGASFKKAKSVLIGKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGARSAEALA 122

Query: 124 EYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEK 183
           E+VNNEGGTNVKIAAVPSNVVVLT+D+FDE+VL++ KDVLVEFYAPWCGHCK+LAP YEK
Sbjct: 123 EFVNNEGGTNVKIAAVPSNVVVLTSDSFDEVVLNEKKDVLVEFYAPWCGHCKSLAPIYEK 182

Query: 184 VAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 243
           VA AF  E DVV+ANLDADKYKDLAEKYGVSG+PTLKFFPKGNK GE+Y GGRDLEDFV+
Sbjct: 183 VATAFKSEGDVVIANLDADKYKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGRDLEDFVT 242

Query: 244 FINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTA 303
           FIN+KCGTSRDGKGQLTS AG VASLD+LVKEF++AS DEKKAVF++IE  VE LEGS A
Sbjct: 243 FINDKCGTSRDGKGQLTSKAGTVASLDSLVKEFISASDDEKKAVFARIEEEVEKLEGSAA 302

Query: 304 RHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           R+GKIY+K AK+ + KG+DYAK EI RL+RML+KSI+ AKADEF+LKKNILSTF
Sbjct: 303 RYGKIYVKAAKSSLQKGADYAKNEIQRLERMLEKSINQAKADEFILKKNILSTF 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436445|ref|XP_004136003.1| PREDICTED: probable protein disulfide-isomerase A6-like [Cucumis sativus]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/358 (78%), Positives = 321/358 (89%)

Query: 1   MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAP 60
           M ++QIW A+  L LF  SA+ADDVVVLTEDNFEKEVGQD+GALVEFYAPWCGHCKKLAP
Sbjct: 1   MAKHQIWFAVAALALFLSSAVADDVVVLTEDNFEKEVGQDKGALVEFYAPWCGHCKKLAP 60

Query: 61  EYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 120
           EYEKLG SFKKAKSVLIGKVDCDEHK +CSKYGV GYPTIQWFPKGSLEPKKYEG R+ +
Sbjct: 61  EYEKLGGSFKKAKSVLIGKVDCDEHKGVCSKYGVSGYPTIQWFPKGSLEPKKYEGQRTAD 120

Query: 121 ALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPT 180
           ALAE+VN+EGGTNVKIA++PS+VVVL+ADNFDE+VLD SKDVLVEFYAPWCGHCKNLAP 
Sbjct: 121 ALAEFVNSEGGTNVKIASIPSSVVVLSADNFDEVVLDSSKDVLVEFYAPWCGHCKNLAPI 180

Query: 181 YEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED 240
           YEKVA AF LE+DVV+ANLDADKY+DLAEKYG+SGFPTLKFFPKGNKDGE+Y GGRD++D
Sbjct: 181 YEKVATAFKLEEDVVIANLDADKYRDLAEKYGISGFPTLKFFPKGNKDGEDYDGGRDVDD 240

Query: 241 FVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEG 300
           FVSFINEK GT+RD KGQLT  AG+VASL++LVKEFVAAS +EKK++F+KIE     L G
Sbjct: 241 FVSFINEKSGTNRDAKGQLTVKAGLVASLESLVKEFVAASKEEKKSIFAKIEEEAGKLSG 300

Query: 301 STARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT 358
           S ARHGKIY+K AK  M+KG DYAK EI+R++R+L+KS+S AKADEF LK+NILS+F 
Sbjct: 301 SAARHGKIYVKSAKKCMEKGGDYAKSEIERIKRILEKSVSPAKADEFNLKRNILSSFV 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2062029	361	UNE5 "UNFERTILIZED EMBRYO SAC	0.997	0.988	0.773	1.1e-149
DICTYBASE|DDB_G0276141	363	pdi1 "protein disulfide isomer	0.983	0.969	0.469	5e-83
POMBASE|SPAC17H9.14c	359	SPAC17H9.14c "protein disulfid	0.966	0.963	0.429	4.1e-72
ASPGD|ASPL0000061308	368	tigA [Emericella nidulans (tax	0.966	0.940	0.412	9.4e-66
WB|WBGene00003962	485	pdi-1 [Caenorhabditis elegans	0.399	0.294	0.388	2.4e-48
UNIPROTKB|Q17967	485	pdi-1 "Protein disulfide-isome	0.399	0.294	0.388	2.4e-48
FB|FBgn0033663	489	ERp60 "ERp60" [Drosophila mela	0.379	0.278	0.401	4.8e-47
UNIPROTKB|F1NK96	447	PDIA6 "Uncharacterized protein	0.326	0.261	0.443	1.3e-46
UNIPROTKB|A6QNL5	453	PDIA6 "PDIA6 protein" [Bos tau	0.321	0.253	0.475	2e-46
FB|FBgn0025678	433	CaBP1 "calcium-binding protein	0.648	0.535	0.426	2.3e-46

TAIR|locus:2062029 UNE5 "UNFERTILIZED EMBRYO SAC 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
 Identities = 276/357 (77%), Positives = 307/357 (85%)

Query:     1 MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAP 60
             M + QIW     L L  VSA+ADDVVVLT+D+FEKEVG+D+GALVEFYAPWCGHCKKLAP
Sbjct:     1 MAKSQIWFGFALLALLLVSAVADDVVVLTDDSFEKEVGKDKGALVEFYAPWCGHCKKLAP 60

Query:    61 EYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 120
             EYEKLGASFKKAKSVLI KVDCDE KS+C+KYGV GYPTIQWFPKGSLEP+KYEGPR+ E
Sbjct:    61 EYEKLGASFKKAKSVLIAKVDCDEQKSVCTKYGVSGYPTIQWFPKGSLEPQKYEGPRNAE 120

Query:   121 ALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPT 180
             ALAEYVN EGGTNVK+AAVP NVVVLT DNFDEIVLD++KDVLVEFYAPWCGHCK+LAPT
Sbjct:   121 ALAEYVNKEGGTNVKLAAVPQNVVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPT 180

Query:   181 YEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED 240
             YEKVA  F  E+ VV+ANLDAD +K L EKYGVSGFPTLKFFPK NK G +Y GGRDL+D
Sbjct:   181 YEKVATVFKQEEGVVIANLDADAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGRDLDD 240

Query:   241 FVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEG 300
             FVSFINEK GTSRD KGQLTS AGIV SLDALVKE VAAS DEKKAV S+IE     L+G
Sbjct:   241 FVSFINEKSGTSRDSKGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKG 300

Query:   301 STARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
             ST R+GK+YLK+AK+Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct:   301 STTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357

GO:0005576 "extracellular region" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0009553 "embryo sac development" evidence=IMP

GO:0048868 "pollen tube development" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

DICTYBASE|DDB_G0276141 pdi1 "protein disulfide isomerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 169/360 (46%), Positives = 229/360 (63%)

Query:     5 QIWLALGTLTLFFVSALADD--VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY 62
             +I L +  + L FV+  + +  VVVL+ DNF+  V   +   V+FYAPWCGHCKKLAP++
Sbjct:     2 KILLFVTLIALAFVALCSAEGNVVVLSPDNFDTVVDGSKTVFVKFYAPWCGHCKKLAPDF 61

Query:    63 EKLGASFKKAKS-VLIGKVDCDE--HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 119
             E L  +F    + V+I KVDCD+  +K+LCSKY V GYPT++ F K S   K Y G RS 
Sbjct:    62 EILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDK-STTAKDYNGARSV 120

Query:   120 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP 179
             + L  Y+NN   TNVK+   PSNVV L+  NFD +VLDKSK+VLVEFYAPWCGHCK L P
Sbjct:   121 DELLTYINNHAKTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWCGHCKKLMP 180

Query:   180 TYEKVAAAFTLEDDVVVANLDADKY--KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
              YE +   +  E DVV+A +D D    K +  KYGV+GFPTLK+F K +KDGE+Y  GRD
Sbjct:   181 DYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRD 240

Query:   238 LEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEV 297
             L+ F+++IN++ G +R   G+L   AG V  LD +  EF+AA+ + +K +  K +  V+ 
Sbjct:   241 LDTFINYINKQAGVNRVKGGKLAVGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDS 300

Query:   298 LEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
             L       G  Y+KV K   +K  D+   EI R+ +++  S+S  KADEF  K NIL +F
Sbjct:   301 LPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESF 360

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA;IGI

GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" evidence=IDA

GO:0006457 "protein folding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC17H9.14c SPAC17H9.14c "protein disulfide isomerase" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 153/356 (42%), Positives = 214/356 (60%)

Query:     8 LALGTLTLFFVSAL--ADDVVVLTEDN-FEKEV-GQDRGALVEFYAPWCGHCKKLAPEYE 63
             L L +  +F + AL  A  VV L   N  E  +    +GAL+EFYA WCGHCK LAP YE
Sbjct:     3 LPLLSFVIFALFALVFASGVVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYE 62

Query:    64 KLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 123
             +LGA F+    VLIGK+D D H  +  KY + G+PT+ WFP    EP +Y   R  ++L 
Sbjct:    63 ELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSLT 122

Query:   124 EYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEK 183
             ++V+ + G   +   +PSNVV L + NFD++V+D  KDVLVEFYA WCG+CK LAPTYE 
Sbjct:   123 QFVSEKTGIKKRKIVLPSNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYET 182

Query:   184 VAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE-YGGGRDLEDFV 242
             +   F  E +V +  ++AD + D+   + V+ FPT+KFFPK +KD  E Y G R LE  +
Sbjct:   183 LGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLI 242

Query:   243 SFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGST 302
              +IN+K GT R   G L STAG + + D    EF+  S   K+ V  K+++    LE S+
Sbjct:   243 EYINKKSGTQRSPDGTLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQ--LALEDSS 300

Query:   303 ARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRML-DKSISAAKADEFVLKKNILSTF 357
              R  K Y KV +  ++   ++  KE  RL ++L  KSI+ A AD+F  + NIL++F
Sbjct:   301 -RWTKYYKKVFEKILND-ENWVHKEAKRLSKLLRQKSIALASADDFKTRLNILNSF 354

GO:0003756 "protein disulfide isomerase activity" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006457 "protein folding" evidence=IMP

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0045454 "cell redox homeostasis" evidence=IEA

ASPGD|ASPL0000061308 tigA [Emericella nidulans (taxid:162425)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 150/364 (41%), Positives = 212/364 (58%)

Query:     1 MERYQIWLALGTLTLFFV-SALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKL 58
             M R    L  G +TL    SA+ D    L   NF+K V    + ALVEF+APWCGHCK L
Sbjct:     1 MVRASTLLLSGLVTLATARSAVLD----LIPKNFDKVVLNSGKPALVEFFAPWCGHCKNL 56

Query:    59 APEYEKLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR 117
             AP YE+LG +F  A+  V I KVD D ++ L  ++G+QG+PTI+WF   S  P+ Y+G R
Sbjct:    57 APVYEELGQAFAHAEDKVSIAKVDADANRDLGKRFGIQGFPTIKWFDGKSETPEDYKGGR 116

Query:   118 STEALAEYVNNEGGTNVKIAAV-PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKN 176
               E+L  +V  + G   K A   PSNV +LT   F  +V    KDV V F APWCGHCK 
Sbjct:   117 DLESLTAFVTEKTGIKAKGAKKEPSNVEMLTDTTFKSVV-GGDKDVFVAFTAPWCGHCKK 175

Query:   177 LAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG 234
             LAPT+E +A  F LE +V++A +DA+    K  A   GV+G+PT+KFFPKG+ +G  Y G
Sbjct:   176 LAPTWETLATDFALEPNVIIAKVDAEAESSKATARSQGVTGYPTIKFFPKGSTEGIVYQG 235

Query:   235 GRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERG 294
              R  E FV F+N   GT R   G L   AG + +LD +V +++ +     K     ++  
Sbjct:   236 ARTEEAFVDFVNNNAGTHRAPGGTLNEKAGTILALDEIVAKYITS-----KNFGELVDEA 290

Query:   295 VEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAA-KADEFVLKKNI 353
              +V +    ++ + Y+KVA+  + +  +YA KE++RL+++L K  SA  K D+ V + N+
Sbjct:   291 KKVAKTVGGKYAEYYVKVAEK-LAQNEEYAAKELERLKKVLSKGGSAPEKLDDMVSRSNV 349

Query:   354 LSTF 357
             L  F
Sbjct:   350 LRKF 353

GO:0003756 "protein disulfide isomerase activity" evidence=IEA;ISA

GO:0006457 "protein folding" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

WB|WBGene00003962 pdi-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 272 (100.8 bits), Expect = 2.4e-48, Sum P(2) = 2.4e-48
 Identities = 59/152 (38%), Positives = 89/152 (58%)

Query:   111 KKYEGPRSTEALAE-YVNNEGGTNVKIAAVPSN-----VVVLTADNFDEIVLDKSKDVLV 164
             K  EG    EA    Y+  +   ++K   +P +     V VL A NF+EI LD++K V V
Sbjct:   328 KPQEG-EDFEAFTNSYLEGKSAQDLKAQDLPEDWNALPVKVLVASNFNEIALDETKTVFV 386

Query:   165 EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK 224
             +FYAPWCGHCK L P ++++A  +    +VV+A LDA    +LA+   V+ FPTLK +P 
Sbjct:   387 KFYAPWCGHCKQLVPVWDELAEKYESNPNVVIAKLDAT-LNELAD-VKVNSFPTLKLWPA 444

Query:   225 GNKDGEEYGGGRDLEDFVSFINEKCGTSRDGK 256
             G+    +Y G R+LE F  F+N+  G++ + +
Sbjct:   445 GSSTPVDYDGDRNLEKFEEFVNKYAGSASESE 476

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0003810 "protein-glutamine gamma-glutamyltransferase activity" evidence=IDA

GO:0080058 "protein deglutathionylation" evidence=IDA

UNIPROTKB|Q17967 pdi-1 "Protein disulfide-isomerase 1" [Caenorhabditis elegans (taxid:6239)]

 Score = 272 (100.8 bits), Expect = 2.4e-48, Sum P(2) = 2.4e-48
 Identities = 59/152 (38%), Positives = 89/152 (58%)

Query:   111 KKYEGPRSTEALAE-YVNNEGGTNVKIAAVPSN-----VVVLTADNFDEIVLDKSKDVLV 164
             K  EG    EA    Y+  +   ++K   +P +     V VL A NF+EI LD++K V V
Sbjct:   328 KPQEG-EDFEAFTNSYLEGKSAQDLKAQDLPEDWNALPVKVLVASNFNEIALDETKTVFV 386

Query:   165 EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK 224
             +FYAPWCGHCK L P ++++A  +    +VV+A LDA    +LA+   V+ FPTLK +P 
Sbjct:   387 KFYAPWCGHCKQLVPVWDELAEKYESNPNVVIAKLDAT-LNELAD-VKVNSFPTLKLWPA 444

Query:   225 GNKDGEEYGGGRDLEDFVSFINEKCGTSRDGK 256
             G+    +Y G R+LE F  F+N+  G++ + +
Sbjct:   445 GSSTPVDYDGDRNLEKFEEFVNKYAGSASESE 476

GO:0006457 "protein folding" evidence=IDA

FB|FBgn0033663 ERp60 "ERp60" [Drosophila melanogaster (taxid:7227)]

 Score = 271 (100.5 bits), Expect = 4.8e-47, Sum P(2) = 4.8e-47
 Identities = 59/147 (40%), Positives = 87/147 (59%)

Query:   118 STEALAEYVN----NEGGTNVKIAAVP-SN---VVVLTADNFDEIVLDKSKDVLVEFYAP 169
             S E L ++V     NE    +K   +P SN   V V  A NFD++V++  KD L+EFYAP
Sbjct:   333 SVENLQDFVEKLLANELEPYIKSEPIPESNDAPVKVAVAKNFDDLVINNGKDTLIEFYAP 392

Query:   170 WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 229
             WCGHCK L+P YE++A     ++DV +  +DA    D+  ++ V GFPTL + PK  K+ 
Sbjct:   393 WCGHCKKLSPIYEELAEKLQ-DEDVAIVKMDATA-NDVPPEFNVRGFPTLFWLPKDAKNK 450

Query:   230 E-EYGGGRDLEDFVSFINEKCGTSRDG 255
                Y GGR+++DF+ +I ++  T   G
Sbjct:   451 PVSYNGGREVDDFLKYIAKEATTELKG 477

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|F1NK96 PDIA6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 266 (98.7 bits), Expect = 1.3e-46, Sum P(3) = 1.3e-46
 Identities = 55/124 (44%), Positives = 79/124 (63%)

Query:     6 IWLALGTLTLFF-VSAL---ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAP 60
             +W    + TLF  V+ L   +DDV+ LT  NF KEV Q     LVEFYAPWCGHC++L P
Sbjct:     9 LWWGTVSCTLFLAVNGLYSASDDVIELTPTNFNKEVIQSESLWLVEFYAPWCGHCQRLTP 68

Query:    61 EYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 120
             E++K   + K    V +G VD D+H+SL  +YGV+G+PTI+ F     + + Y+G R++E
Sbjct:    69 EWKKAATALKGV--VKVGAVDADKHQSLGGQYGVRGFPTIKIFGANKNKAEDYQGGRTSE 126

Query:   121 ALAE 124
             A+ +
Sbjct:   127 AIVD 130

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

UNIPROTKB|A6QNL5 PDIA6 "PDIA6 protein" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
 Identities = 58/122 (47%), Positives = 80/122 (65%)

Query:     8 LALGTLTLFF-VSAL---ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEY 62
             L L + TLF  V+ L   +DDV+ LT  NF +EV Q D   LVEFYAPWCGHC++L PE+
Sbjct:    19 LGLMSCTLFITVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEW 78

Query:    63 EKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122
             +K   + K    V +G VD D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+
Sbjct:    79 KKAATALKDV--VKVGAVDADKHQSLGGQYGVQGFPTIKIFGSNKNKPEDYQGGRTGEAI 136

Query:   123 AE 124
              +
Sbjct:   137 VD 138

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

FB|FBgn0025678 CaBP1 "calcium-binding protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 110/258 (42%), Positives = 158/258 (61%)

Query:    10 LGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGAS 68
             +G+++ F+  + +D VV LT  NF++EV +D    +VEFYAPWCGHC+ L PEY+KL  +
Sbjct:    14 VGSVSAFY--SPSDGVVELTPSNFDREVLKDDAIWVVEFYAPWCGHCQSLVPEYKKLAKA 71

Query:    69 FKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
              K    V +G V+ D   +L  ++GV+G+PTI+ F      P  Y G R+ +A+AE    
Sbjct:    72 LKGV--VKVGSVNADADSTLSGQFGVRGFPTIKIFGANKKSPTDYNGQRTAKAIAEAALA 129

Query:   129 E------------GGTNVKIAAVPS--NVVVLTADNFDEIVLDKSKDV-LVEFYAPWCGH 173
             E            GG++   +   S  +V+ LT DNFD++VL+ S D+ LVEF+APWCGH
Sbjct:   130 EVKKKVQGVLGGGGGSSSGGSGSSSGDDVIELTEDNFDKLVLN-SDDIWLVEFFAPWCGH 188

Query:   174 CKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK---DGE 230
             CKNLAP + K  AA  L+  V +  LDA  ++  A +Y V G+PT+KFFP G+K   D +
Sbjct:   189 CKNLAPEWAK--AAKELKGKVKLGALDATAHQSKAAEYNVRGYPTIKFFPAGSKRASDAQ 246

Query:   231 EYGGGRDLEDFVSFINEK 248
             EY GGR   D VS+ ++K
Sbjct:   247 EYDGGRTASDIVSWASDK 264

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:2000427 "positive regulation of apoptotic cell clearance" evidence=IMP;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q00216	TIGA_ASPNG	5, ., 3, ., 4, ., 1	0.4326	0.9273	0.9247	yes	no
Q942L2	PDI22_ORYSJ	5, ., 3, ., 4, ., 1	0.7589	0.9385	0.9056	yes	no
O22263	PDI21_ARATH	5, ., 3, ., 4, ., 1	0.7731	0.9972	0.9889	yes	no
Q86IA3	PDI1_DICDI	5, ., 3, ., 4, ., 1	0.4694	0.9832	0.9696	yes	no
O13811	PDI2_SCHPO	5, ., 3, ., 4, ., 1	0.4297	0.9664	0.9637	yes	no
Q75M08	PDI21_ORYSJ	5, ., 3, ., 4, ., 1	0.7559	0.9385	0.9180	no	no
P38661	PDIA6_MEDSA	5, ., 3, ., 4, ., 1	0.7728	0.9972	0.9807	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.4.1	0.979
3rd Layer	5.3.4	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	2e-57
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	2e-54
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	6e-49
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	8e-49
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	2e-48
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	4e-47
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	7e-43
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	3e-41
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	4e-41
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	2e-38
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	4e-38
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	6e-38
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	1e-36
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	2e-34
pfam07749	95	pfam07749, ERp29, Endoplasmic reticulum protein ER	3e-34
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	3e-33
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	2e-31
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	9e-31
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	2e-29
cd00238	93	cd00238, ERp29c, ERp29 and ERp38, C-terminal domai	8e-29
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	1e-28
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	2e-28
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	4e-28
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	8e-28
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	1e-26
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	1e-25
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	2e-25
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	2e-24
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	2e-24
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	2e-24
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	5e-24
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	1e-23
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	2e-23
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	7e-22
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	9e-21
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	4e-20
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	2e-19
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	5e-19
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	6e-19
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	7e-19
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	9e-19
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	2e-18
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	2e-15
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	5e-15
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	5e-15
cd02950	142	cd02950, TxlA, TRX-like protein A (TxlA) family; T	8e-14
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	3e-13
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	4e-13
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	4e-13
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	5e-13
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	2e-12
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	4e-12
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	9e-12
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	1e-11
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	2e-11
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	9e-11
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	2e-10
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	2e-10
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	3e-10
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	6e-10
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	8e-10
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	1e-09
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	4e-09
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	4e-09
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	7e-09
TIGR02187	215	TIGR02187, GlrX_arch, Glutaredoxin-like domain pro	4e-08
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	1e-07
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	1e-07
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	1e-07
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	2e-07
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	2e-07
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	8e-07
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	1e-06
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	1e-06
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	1e-06
cd02950	142	cd02950, TxlA, TRX-like protein A (TxlA) family; T	3e-06
cd02962	152	cd02962, TMX2, TMX2 family; composed of proteins s	3e-06
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	4e-06
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	5e-06
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	5e-05
PRK00293	571	PRK00293, dipZ, thiol:disulfide interchange protei	5e-05
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	1e-04
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	2e-04
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	2e-04
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	2e-04
cd03006	113	cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP	3e-04
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	4e-04
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	5e-04
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	7e-04
TIGR02187	215	TIGR02187, GlrX_arch, Glutaredoxin-like domain pro	0.001
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	0.001
cd03006	113	cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP	0.003
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	0.003

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  181 bits (461), Expect = 2e-57
 Identities = 75/105 (71%), Positives = 86/105 (81%), Gaps = 1/105 (0%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           NVV LT  NFD++V D  KDVLVEFYAPWCGHCKNLAP YEK+AA F  EDDVV+A +DA
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 202 DK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
           D+  KDLA+KYGVSGFPTLKFFPKG+ +  +Y GGRDLED V F+
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  173 bits (441), Expect = 2e-54
 Identities = 64/105 (60%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 24  DVVVLTEDNFEKEVGQDR-GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
           +VV LT+ NF+K VG D+   LVEFYAPWCGHCK LAPEYEKL A F     V+I KVD 
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 83  DE-HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
           DE +K L  KYGV G+PT+++FPKGS EP KYEG R  E L ++V
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  159 bits (405), Expect = 6e-49
 Identities = 69/103 (66%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           LTA NFDEIVL   KDVLVEFYAPWCGHCKNLAP YEK+A     + D+V+A +DA   K
Sbjct: 1   LTASNFDEIVLSN-KDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK 59

Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248
           DLA ++GVSGFPT+KFFPKG K   +Y GGRDLE  V F+NEK
Sbjct: 60  DLASRFGVSGFPTIKFFPKG-KKPVDYEGGRDLEAIVEFVNEK 101

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  159 bits (404), Expect = 8e-49
 Identities = 54/100 (54%), Positives = 69/100 (69%), Gaps = 1/100 (1%)

Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS 87
           LT  NF++ V  ++  LVEFYAPWCGHCK LAPEYEKL    KK   +++ KVD    K 
Sbjct: 1   LTASNFDEIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKD 60

Query: 88  LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           L S++GV G+PTI++FPKG  +P  YEG R  EA+ E+VN
Sbjct: 61  LASRFGVSGFPTIKFFPKGK-KPVDYEGGRDLEAIVEFVN 99

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  158 bits (401), Expect = 2e-48
 Identities = 60/101 (59%), Positives = 74/101 (73%)

Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
           V LT+DNF++ V   +  LVEFYAPWCGHCK LAPEYEKL    K    V++ KVDC  +
Sbjct: 1   VELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN 60

Query: 86  KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
             LCS+YGV+GYPTI+ FP GS EP KYEGPR+ E+L E++
Sbjct: 61  NDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  154 bits (392), Expect = 4e-47
 Identities = 60/102 (58%), Positives = 70/102 (68%), Gaps = 1/102 (0%)

Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           V LT DNFDE+V D SKDVLVEFYAPWCGHCK LAP YEK+A     +  VVVA +D   
Sbjct: 1   VELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59

Query: 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
             DL  +YGV G+PT+K FP G+K+  +Y G R LE  V FI
Sbjct: 60  NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  143 bits (364), Expect = 7e-43
 Identities = 58/105 (55%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V VLT +NFDE V    K VLV+FYAPWCG CK LAP YEK+A  +   DDV  A +DAD
Sbjct: 2   VKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYK--DDVKFAKVDAD 59

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +  DLA +YGV GFPT+KFF  G K   +Y G R  +D V+FI +
Sbjct: 60  ENPDLASEYGVRGFPTIKFFKNGKKV-SDYVGARTKDDLVAFIKK 103

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  149 bits (379), Expect = 3e-41
 Identities = 69/225 (30%), Positives = 97/225 (43%), Gaps = 16/225 (7%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVD 81
           +DV+VLT+DNF+  +      LVEFYAPWCGHCK LAPEYEK     KK    + + KVD
Sbjct: 1   EDVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVD 60

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPS 141
             E K L  KYGV GYPT++ F  G      Y GPR  + + +Y+  + G        P+
Sbjct: 61  ATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSG--------PA 112

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
              + T  + +   L     V++ F+         L  T+  VA            + D 
Sbjct: 113 VKEIETVADLEA-FLADDDVVVIGFFK---DLDSELNDTFLSVAEKLRDVYFFFAHSSDV 168

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 245
             +  L            K   +  K  + +     D+ D   FI
Sbjct: 169 AAFAKLGAFPDSVVL--FKPKDEDEKFSKVDGEMDTDVSDLEKFI 211

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score =  139 bits (352), Expect = 4e-41
 Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 2/104 (1%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V V+   NFDE+VLD  KDVLVEFYAPWCGHCK LAP YE++A     +D+VV+A +DA 
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 245
              D+  ++ V GFPT+ FFP G+K    +Y G R LED + FI
Sbjct: 62  A-NDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  142 bits (359), Expect = 2e-38
 Identities = 71/161 (44%), Positives = 92/161 (57%), Gaps = 15/161 (9%)

Query: 109 EPKKY---EGPRSTEALAE----YVNNEGGTNVKIAAVPSN----VVVLTADNFDEIVLD 157
             KKY   +   S+E L      +++ +    +K   +P +    V VL   NFDEIVLD
Sbjct: 303 GNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLD 362

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLDADKYKDLAEKYGVSGF 216
           ++KDVLVEFYAPWCGHCKNLAP YE++A  +   E DVV+A +DA    D+   + V GF
Sbjct: 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-NDV-PPFEVEGF 420

Query: 217 PTLKFFPKGNKDGE-EYGGGRDLEDFVSFINEKCGTSRDGK 256
           PT+KF P G K     Y G R LEDF  FI +      +GK
Sbjct: 421 PTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLEGK 461

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  131 bits (332), Expect = 4e-38
 Identities = 51/103 (49%), Positives = 68/103 (66%), Gaps = 5/103 (4%)

Query: 24  DVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVD 81
           DVV LT+ NF+K+V   D   LVEFYAPWCGHCK LAPE++K   + K   K   +G VD
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVK---VGAVD 57

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 124
            D H+SL  +YGV+G+PTI+ F  G   P+ Y+G R+ +A+  
Sbjct: 58  ADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVS 100

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  131 bits (331), Expect = 6e-38
 Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 24  DVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
            V VLT++NF++EV + D+  LV+FYAPWCG CK LAPEYEKL   +K    V   KVD 
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYK--DDVKFAKVDA 58

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           DE+  L S+YGV+G+PTI++F  G  +   Y G R+ + L  ++ 
Sbjct: 59  DENPDLASEYGVRGFPTIKFFKNGK-KVSDYVGARTKDDLVAFIK 102

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  127 bits (321), Expect = 1e-36
 Identities = 53/103 (51%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           +VV LT  NFD+ VL+     LVEFYAPWCGHCKNLAP ++K A A  L+  V V  +DA
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKA--LKGIVKVGAVDA 58

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 244
           D ++ LA++YGV GFPT+K F  G    ++Y GGR  +  VS 
Sbjct: 59  DVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSA 101

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score =  122 bits (308), Expect = 2e-34
 Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCD 83
           V+ LTEDNF+  +  +    V+F+APWCGHCK+LAP +E+L   F     SV I KVDC 
Sbjct: 2   VLELTEDNFDHHI-AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
           +H+ LCS++ V+GYPT+  F K   +  KY+G R  ++L E+V
Sbjct: 61  QHRELCSEFQVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEFV 102

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|191840 pfam07749, ERp29, Endoplasmic reticulum protein ERp29, C-terminal domain

 Score =  121 bits (305), Expect = 3e-34
 Identities = 41/94 (43%), Positives = 61/94 (64%)

Query: 264 GIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDY 323
           G +  LD L  EFV AS DE+K + S++E  V  L+ S A++ K Y+KV +  ++KG DY
Sbjct: 1   GTIEELDELAAEFVTASDDERKELLSEVEEAVAKLKDSAAKYAKYYVKVMEKILEKGEDY 60

Query: 324 AKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
             KE+ RL+R+L+ S++  KADE   + NIL +F
Sbjct: 61  VAKELARLERLLEGSLAPEKADELTSRLNILRSF 94

ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals. ERp29 is comprised of two domains. This domain, the C-terminal domain, has an all helical fold. ERp29 is thought to form part of the thyroglobulin folding complex. Length = 95

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  128 bits (323), Expect = 3e-33
 Identities = 58/114 (50%), Positives = 77/114 (67%), Gaps = 8/114 (7%)

Query: 141 SNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVV 196
            +V+VLT DNFD+ +  KS + VLVEFYAPWCGHCK+LAP YEK  AA  L+     + +
Sbjct: 1   EDVLVLTKDNFDDFI--KSHEFVLVEFYAPWCGHCKSLAPEYEK--AADELKKKGPPIKL 56

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 250
           A +DA + KDLA+KYGVSG+PTLK F  G     +Y G RD +  V ++ ++ G
Sbjct: 57  AKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSG 110

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score =  114 bits (287), Expect = 2e-31
 Identities = 50/108 (46%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
            V  LT  NFD++V + +   LVEFYAPWCGHCKNL P Y K A        V   + D 
Sbjct: 1   PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDG----EEYGGGRDLEDFVSFI 245
           DK K L  KYGV GFPTLK F    K      E+Y G R  +  V F+
Sbjct: 61  DKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  121 bits (305), Expect = 9e-31
 Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 31/188 (16%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLDA 201
           V VLT   FD+ + +  + VLV+FYAPWCGHCK LAP Y+K A      + ++V+A++DA
Sbjct: 34  VTVLTDSTFDKFITEN-EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA 92

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG---TSRDGKGQ 258
            +  +LA+++GV G+PT+KFF KGN     Y GGR  +  VS+I +  G   T  +   +
Sbjct: 93  TEEMELAQEFGVRGYPTIKFFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVTEVESASE 150

Query: 259 LTSTAGIVASL---------DALVKEFV---------------AASGDEKKAVFSKIERG 294
           +   A  +              L K+F                   G  K  V  K E G
Sbjct: 151 IKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEEG 210

Query: 295 VEVLEGST 302
           VE+  G T
Sbjct: 211 VELFMGKT 218

Length = 477

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score =  108 bits (273), Expect = 2e-29
 Identities = 49/109 (44%), Positives = 61/109 (55%), Gaps = 9/109 (8%)

Query: 25  VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           V  LT  NF+K V   +   LVEFYAPWCGHCK L PEY K          V +  VDCD
Sbjct: 2   VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL--VQVAAVDCD 59

Query: 84  E--HKSLCSKYGVQGYPTIQWFPKG----SLEPKKYEGPRSTEALAEYV 126
           E  +K LC KYGVQG+PT++ F           + Y G RS +A+ ++V
Sbjct: 60  EDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|238146 cd00238, ERp29c, ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38

 Score =  107 bits (268), Expect = 8e-29
 Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 1/93 (1%)

Query: 266 VASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAK 325
           +  LD L KEFV AS +E+K +  K++  VE L+ + A++ K Y+KV +  ++KG DY +
Sbjct: 1   IEELDELAKEFVDASDEERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVE 60

Query: 326 KEIDRLQRMLDKSI-SAAKADEFVLKKNILSTF 357
           KE+ RL+R+L+K   +  KADE   + NIL +F
Sbjct: 61  KELARLERLLEKKGLAPEKADELTRRLNILRSF 93

ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5. However, unlike human P5, ERp38 also contains a C-terminal domain with homology to the C-terminal domain of ERp29. It may be a glucose-regulated protein. The function of the all-helical C-terminal domain of ERp29 and ERp38 remains unclear. The C-terminal domain of Wind is thought to provide a distinct site required for interaction with its substrate, Pipe. Length = 93

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score =  106 bits (268), Expect = 1e-28
 Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           V V+   NF++ V   D+  LVEFYAPWCGHCK LAP YE+L    K   +V+I K+D  
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSL-EPKKYEGPRSTEALAEYV 126
            +  + S++ V G+PTI +FP G    P KYEG R+ E L +++
Sbjct: 62  AN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  114 bits (288), Expect = 2e-28
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 15/165 (9%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVD 81
           + V VLT+  F+K + ++   LV+FYAPWCGHCK+LAPEY+K     K+ KS +++  VD
Sbjct: 32  EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVD 91

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPS 141
             E   L  ++GV+GYPTI++F KG   P  Y G R+ + +  ++    G  V       
Sbjct: 92  ATEEMELAQEFGVRGYPTIKFFNKG--NPVNYSGGRTADGIVSWIKKLTGPAVTE----- 144

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAA 186
                  ++  EI L  +K + V FY  +      L   +E+VA 
Sbjct: 145 ------VESASEIKL-IAKKIFVAFYGEYTSKDSELYKKFEEVAD 182

Length = 477

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score =  105 bits (264), Expect = 4e-28
 Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 4/105 (3%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLD 200
            V+ LT DNFD  +     +  V+F+APWCGHCK LAPT+E++A  F      V +A +D
Sbjct: 1   GVLELTEDNFDHHI--AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVD 58

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
             ++++L  ++ V G+PTL  F K  +  ++Y G RDL+    F+
Sbjct: 59  CTQHRELCSEFQVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEFV 102

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score =  104 bits (262), Expect = 8e-28
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 25  VVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           V+ LT ++F + V   +   LV+FYAPWCG C+ L PE  K  A   K K V +G VDC 
Sbjct: 3   VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKA-ARALKGK-VKVGSVDCQ 60

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG-PRSTEALAEYV 126
           +++SLC +  ++ YPTI+ +P  + +   Y G  R  +++ E++
Sbjct: 61  KYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score =  101 bits (253), Expect = 1e-26
 Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC- 82
           DVV LT+++F K + +++  LV FYAPWCGHCKK+ PE+ K     K+    ++  VDC 
Sbjct: 1   DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT 60

Query: 83  -DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEY 125
             EH +L  +Y V+G+PT ++F  G    +KYEG R+ E + E+
Sbjct: 61  KPEHDALKEEYNVKGFPTFKYFENGKFV-EKYEGERTAEDIIEF 103

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 98.9 bits (247), Expect = 1e-25
 Identities = 47/106 (44%), Positives = 62/106 (58%), Gaps = 4/106 (3%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           +VV LT ++F +  L K K VLV FYAPWCGHCK + P + K A     +   V+A +D 
Sbjct: 1   DVVHLTDEDFRKF-LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDC 59

Query: 202 DK--YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
            K  +  L E+Y V GFPT K+F  G K  E+Y G R  ED + F+
Sbjct: 60  TKPEHDALKEEYNVKGFPTFKYFENG-KFVEKYEGERTAEDIIEFM 104

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  105 bits (265), Expect = 2e-25
 Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 5/119 (4%)

Query: 23  DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKV 80
             V VL   NF++ V  + +  LVEFYAPWCGHCK LAP YE+L   +K A+S V+I K+
Sbjct: 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKM 405

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNEGGTNVKIAA 138
           D   +      + V+G+PTI++ P G   EP  Y+G R+ E  ++++       ++  A
Sbjct: 406 DATAND--VPPFEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLEGKA 462

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  103 bits (258), Expect = 2e-24
 Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 4/118 (3%)

Query: 134 VKIAAVPSN----VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT 189
           +K   +P      V V+  + F+EIV    KDVL+E YAPWCGHCKNL P Y ++   + 
Sbjct: 346 IKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYK 405

Query: 190 LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
             D ++VA ++    +   E++  S FPT+ F   G +    Y G R +E F  F+N+
Sbjct: 406 DNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNK 463

Length = 477

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 96.0 bits (239), Expect = 2e-24
 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 4/99 (4%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVDCDEHKSL 88
           +D+F K+V ++   LV+FYAPWCGHCKKL P + ++GA  K + S V +GK+D   + S+
Sbjct: 6   DDSF-KDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSI 64

Query: 89  CSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
            S++GV+GYPTI+   KG L    Y GPR+ + + E+ N
Sbjct: 65  ASEFGVRGYPTIKLL-KGDLA-YNYRGPRTKDDIVEFAN 101

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 95.4 bits (238), Expect = 2e-24
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           LT  NFDE +    K VLV+F+APWCG CK +AP  E++A     E  V    L+ D+  
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAK--EYEGKVKFVKLNVDENP 58

Query: 206 DLAEKYGVSGFPTLKFFPKGNK 227
           D+A KYG+   PTL  F  G +
Sbjct: 59  DIAAKYGIRSIPTLLLFKNGKE 80

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 94.2 bits (235), Expect = 5e-24
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 11/101 (10%)

Query: 149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 208
           + F+E++   +K V+V+F+APWCG CK +AP  E++A  +     V    +D D+  +LA
Sbjct: 1   EEFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEY---PKVKFVKVDVDENPELA 56

Query: 209 EKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFIN 246
           E+YGV   PT  FF    K+G+E     G    E+   F+ 
Sbjct: 57  EEYGVRSIPTFLFF----KNGKEVDRVVGADPKEELEEFLE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 93.5 bits (233), Expect = 1e-23
 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
            +V+ LT ++F E+VL++ +  LV+FYAPWCG C+ L P   K A A  L+  V V ++D
Sbjct: 1   PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARA--LKGKVKVGSVD 58

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFI 245
             KY+ L ++  +  +PT++ +P        Y G  RD +  + FI
Sbjct: 59  CQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 93.1 bits (232), Expect = 2e-23
 Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 8/111 (7%)

Query: 23  DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK-AKSVLIGKV 80
           D V+VL   +F   + G     LVEFYA WCGHC+  AP ++KL    +K    V +  V
Sbjct: 1   DPVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAV 60

Query: 81  DC--DEHKSLCSKYGVQGYPTIQWFPKGSLEPK---KYEGP-RSTEALAEY 125
           DC  +E+ +LC  +GV GYPT+++FP  S E     K EGP R    L E 
Sbjct: 61  DCADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGPERDVNELREA 111

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 88.9 bits (221), Expect = 7e-22
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 12/100 (12%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD----VVVA 197
            V+VL A +F+  +L      LVEFYA WCGHC+  APT++K+A            V VA
Sbjct: 2   PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDL---RKWRPVVRVA 58

Query: 198 NLD--ADKYKDLAEKYGVSGFPTLKFFP---KGNKDGEEY 232
            +D   ++   L   +GV+G+PTL++FP   K   DG + 
Sbjct: 59  AVDCADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQ 98

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 85.9 bits (213), Expect = 9e-21
 Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 4/107 (3%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK----AKSVLIGK 79
           ++V LT  N +  +      LV FYA WC   + L P +E+  A  K+    A  V+ GK
Sbjct: 2   EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGK 61

Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
           VDCD+   +  +Y +  YPT++ F  G +  ++Y G RS EALAE+V
Sbjct: 62  VDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 83.4 bits (207), Expect = 4e-20
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 31  DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCS 90
           + FE+ +   +  +V+F+APWCG CK +AP  E+L   + K K     KVD DE+  L  
Sbjct: 1   EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVK---FVKVDVDENPELAE 57

Query: 91  KYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           +YGV+  PT  +F K   E  +  G    E L E++ 
Sbjct: 58  EYGVRSIPTFLFF-KNGKEVDRVVGADPKEELEEFLE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 82.1 bits (203), Expect = 2e-19
 Identities = 42/97 (43%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 157 DKSKDV------LVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLDADKYKDLAE 209
           D  KDV      LV+FYAPWCGHCK L P + +V A   +    V V  LDA  Y  +A 
Sbjct: 7   DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIAS 66

Query: 210 KYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246
           ++GV G+PT+K   KG+     Y G R  +D V F N
Sbjct: 67  EFGVRGYPTIKLL-KGDLA-YNYRGPRTKDDIVEFAN 101

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 87.5 bits (217), Expect = 5e-19
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           V V+  + FE+ V + D+  L+E YAPWCGHCK L P Y +LG  +K   S+++ K++  
Sbjct: 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT 418

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG 131
            +++   ++    +PTI +   G   P  YEG R+ E   E+VN    
Sbjct: 419 ANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466

Length = 477

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 80.9 bits (200), Expect = 6e-19
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE----DDVVV 196
           S +V LT+ N D+I L  ++ VLV FYA WC   + L P +E+ AA    E      VV 
Sbjct: 1   SEIVSLTSGNIDDI-LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVW 59

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
             +D DK  D+A++Y ++ +PTLK F  G     EY G R +E    F+
Sbjct: 60  GKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 83.9 bits (207), Expect = 7e-19
 Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 13/138 (9%)

Query: 22  ADDVVVLTEDNFEKEVGQDRGA-----LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL 76
           A+ +V+L + NFEK      GA      V+FYAPWC HC+K+AP +E+L  + K    V 
Sbjct: 29  ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ--VN 86

Query: 77  IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYE-GPRSTEALAEYVNNEGGTNVK 135
           +  +D     +L  ++ ++GYPT+  F KG +   +YE G RSTE LA +   +    + 
Sbjct: 87  VADLDATRALNLAKRFAIKGYPTLLLFDKGKM--YQYEGGDRSTEKLAAFALGDFKKALG 144

Query: 136 IAAVPS--NVVVLTADNF 151
            A VP+  +   LT D F
Sbjct: 145 -APVPAPLSFFALTIDFF 161

Length = 224

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 80.0 bits (198), Expect = 9e-19
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 4/102 (3%)

Query: 28  LTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
           LT+ NF++ +   D+  LV+F+APWCG CK +AP  E+L    +    V   K++ DE+ 
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAK--EYEGKVKFVKLNVDENP 58

Query: 87  SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
            + +KYG++  PT+  F  G  E  +  G     AL + +N 
Sbjct: 59  DIAAKYGIRSIPTLLLFKNGK-EVDRSVGALPKAALKQLINK 99

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 82.8 bits (204), Expect = 2e-18
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 14/172 (8%)

Query: 132 TNVKIAAVPSN-VVVLTADNFDEIVLDKSKDV----LVEFYAPWCGHCKNLAPTYEKVAA 186
           TNVK+ A  +N +V+L   NF+++    +        V+FYAPWC HC+ +AP +E++A 
Sbjct: 20  TNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAK 79

Query: 187 AFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246
           A  L+  V VA+LDA +  +LA+++ + G+PTL  F KG K  +  GG R  E   +F  
Sbjct: 80  A--LKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKG-KMYQYEGGDRSTEKLAAF-- 134

Query: 247 EKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVL 298
                  D K  L +      S  AL  +F  +  +E   ++     G   +
Sbjct: 135 ----ALGDFKKALGAPVPAPLSFFALTIDFFVSGTNEALRIYDAAFAGFFTI 182

Length = 224

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 71.0 bits (174), Expect = 2e-15
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 5/103 (4%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL-IGKVDC 82
           ++V L   +F+  V       V FY+P C HC  LAP + +     K+   V+ IG V+C
Sbjct: 2   EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFA---KEMDGVIRIGAVNC 58

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEY 125
            + + LC   GV  YP++  FP G + P+KY G RS E+L ++
Sbjct: 59  GDDRMLCRSQGVNSYPSLYVFPSG-MNPEKYYGDRSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           +VV LT+ N+   V +    ++EFYAPWC  C++L PE+E+  A +     + + KVD  
Sbjct: 2   NVVELTDSNWT-LVLEGE-WMIEFYAPWCPACQQLQPEWEEF-ADWSDDLGINVAKVDVT 58

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
           +   L  ++ V   PTI     G    ++Y+GPR  E L  ++
Sbjct: 59  QEPGLSGRFFVTALPTIYHAKDG--VFRRYQGPRDKEDLISFI 99

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 14/111 (12%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD--VVVAN 198
           SNVV LT  N+  ++  +    ++EFYAPWC  C+ L P +E+ A      DD  + VA 
Sbjct: 1   SNVVELTDSNWTLVLEGEW---MIEFYAPWCPACQQLQPEWEEFA---DWSDDLGINVAK 54

Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE--EYGGGRDLEDFVSFINE 247
           +D  +   L+ ++ V+  PT+       KDG    Y G RD ED +SFI E
Sbjct: 55  VDVTQEPGLSGRFFVTALPTIYHA----KDGVFRRYQGPRDKEDLISFIEE 101

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

 Score = 67.7 bits (166), Expect = 8e-14
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 153 EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG 212
           E+ L   K  LVEFYA WC  C+ +AP   K+   +  + + V+ N+D  K+    ++Y 
Sbjct: 14  EVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYR 73

Query: 213 VSGFPTLKFFPKGNKDGEEYG 233
           V G P   F    +++G E G
Sbjct: 74  VDGIPHFVFL---DREGNEEG 91

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 65.1 bits (158), Expect = 3e-13
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 5   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 62

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG 234
           +    A KYG+ G PTL  F  G     + G 
Sbjct: 63  QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 94

Length = 109

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 29  TEDNFEKEVGQDRGA---LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
           TE NFE+EV Q       LV+F+APWCG CK+L P  EKL A +K      + KV+CD  
Sbjct: 29  TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK--FKLAKVNCDAE 86

Query: 86  KSLCSKYGVQGYPTIQWFPKG 106
             + +++GVQ  PT+  F  G
Sbjct: 87  PMVAAQFGVQSIPTVYAFKDG 107

Length = 304

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 64.1 bits (156), Expect = 4e-13
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 145 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 204
           V +   F+   L +++ V+V+FYA WCG CK +AP YE+ +  +T    +V   +D D+ 
Sbjct: 5   VTSQAEFEST-LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDEL 60

Query: 205 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
            ++AEK  ++  PT K F  G+      G   +
Sbjct: 61  SEVAEKENITSMPTFKVFKNGSVVDTLLGANDE 93

Length = 98

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 64.1 bits (156), Expect = 5e-13
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 27  VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
           V ++  FE  + Q+   +V+FYA WCG CK++AP YE+    + K   V   KVD DE  
Sbjct: 5   VTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFV---KVDVDELS 61

Query: 87  SLCSKYGVQGYPTIQWFPKGS 107
            +  K  +   PT + F  GS
Sbjct: 62  EVAEKENITSMPTFKVFKNGS 82

Length = 98

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 63.2 bits (153), Expect = 2e-12
 Identities = 34/108 (31%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 21  LADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGK 79
           ++D ++ LT+D+F+ +V +  G  LV+F+A WCG CK +AP  +++   ++   +V   K
Sbjct: 1   MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AK 58

Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           ++ D++     KYG++G PT+  F  G +   K  G  S   L E+++
Sbjct: 59  LNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 105

Length = 109

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 24  DVVVLTEDNFEKEVGQDR---GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
            VV L+    E     +R     LV  YAPWC  C+ +   YE+L      +  V + K 
Sbjct: 2   AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN-VKVAKF 60

Query: 81  DCD-EHKSLC-SKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEALAEYV 126
           + D E +     +  ++ +PTI +FPK S +P KY    R  ++L  +V
Sbjct: 61  NADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 8/95 (8%)

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 194
           A     +  +T  NF++ V+  S++  VLV+F+APWCG CK L PT EK+AA +  +   
Sbjct: 19  AMAAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK--F 76

Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 229
            +A ++ D    +A ++GV   PT+  F    KDG
Sbjct: 77  KLAKVNCDAEPMVAAQFGVQSIPTVYAF----KDG 107

Length = 304

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 143 VVVLTADNFDEIVLDKSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           +V L   +FD  V   S ++  V FY+P C HC +LAPT+ + A    ++  + +  ++ 
Sbjct: 3   IVTLDRGDFDAAV--NSGEIWFVNFYSPRCSHCHDLAPTWREFAK--EMDGVIRIGAVNC 58

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 244
              + L    GV+ +P+L  FP G    E+Y G R  E  V F
Sbjct: 59  GDDRMLCRSQGVNSYPSLYVFPSGMN-PEKYYGDRSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V+  T +  D++ L     V+++F+APWCG C+N AP +E VAA  + +   V  N +A+
Sbjct: 37  VINATGETLDKL-LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE 95

Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
             ++L+ ++ +   PT+  F  G
Sbjct: 96  --RELSARFRIRSIPTIMIFKNG 116

Length = 139

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 149 DNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
            NF + VL +S    V+V+F+AP     K L P  E++A  +  +   V+A ++ D    
Sbjct: 1   QNFQQ-VLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ--FVLAKVNCDAQPQ 57

Query: 207 LAEKYGVSGFPTLKFFPKG 225
           +A+++GV   PT+  F  G
Sbjct: 58  IAQQFGVQALPTVYLFAAG 76

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 6/110 (5%)

Query: 141 SNVVVLTADNFDEIV-LDKS-KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
             VV L+    + +   ++  +  LV  YAPWC  C+ +  +YE++A       +V VA 
Sbjct: 1   EAVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLA-GSNVKVAK 59

Query: 199 LDADKY-KDLA-EKYGVSGFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFI 245
            +AD   ++ A E+  +  FPT+ FFPK ++   +Y    RD++  + F+
Sbjct: 60  FNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 31  DNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL 88
            NF++ + +      +V+F+AP     K+L P  E+L   +      ++ KV+CD    +
Sbjct: 1   QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEY--QGQFVLAKVNCDAQPQI 58

Query: 89  CSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
             ++GVQ  PT+  F  G      ++G +  E L + ++
Sbjct: 59  AQQFGVQALPTVYLFAAGQPVD-GFQGAQPEEQLRQMLD 96

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---HKSLCSKYGVQGYPTI 100
            V FYA WC       P +  L + F + + + I     +E     SL S+YGV G+PTI
Sbjct: 22  AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAI-----EESSIKPSLLSRYGVVGFPTI 76

Query: 101 QWFPKGSLEPKKYEGPRSTEALAEYV 126
             F        +Y G R+ ++LA + 
Sbjct: 77  LLFNSTPR--VRYNGTRTLDSLAAFY 100

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 19  SALAD-DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI 77
             L D +V+  T +  +K +  D   +++F+APWCG C+  AP +E + A  +++  V  
Sbjct: 30  HDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAA--ERSGKVRF 87

Query: 78  GKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 108
            KV+ +  + L +++ ++  PTI  F  G +
Sbjct: 88  VKVNTEAERELSARFRIRSIPTIMIFKNGQV 118

Length = 139

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 56.1 bits (134), Expect = 8e-10
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-DKYKDLAEKYG--VS 214
           K K VLV+F+APWC  C+  AP  E++A  +    DV V  ++  D+  DLA ++G  V 
Sbjct: 31  KGKPVLVDFWAPWCPPCRAEAPLLEELAEEY--GGDVEVVAVNVDDENPDLAAEFGVAVR 88

Query: 215 GFPTLKFFPKGN-KDGEEYGGGRDLEDFVSFINE 247
             PTL  F  G   D    G     E  +  + E
Sbjct: 89  SIPTLLLFKDGKEVDRLVGGKVLPKEALIDALGE 122

Length = 127

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 14/105 (13%)

Query: 155 VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAA-AFTLEDDVVVANLDADK---------- 203
                K VLV F  P C +CK L     K       L+D+ VV  ++ D           
Sbjct: 1   AKGNGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGE 60

Query: 204 ---YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
               K+LA KYGV G PT+ F     K+     G    E+F+  +
Sbjct: 61  TLSEKELARKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFLKLL 105

Length = 105

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 151 FDEIVLDKSKD---------VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
             E VL+ + D           V FYA WC    +  P +  +++ F     +    ++ 
Sbjct: 1   PPEEVLNIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEE 57

Query: 202 DK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
                 L  +YGV GFPT+  F    +    Y G R L+   +F 
Sbjct: 58  SSIKPSLLSRYGVVGFPTILLFNSTPR--VRYNGTRTLDSLAAFY 100

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 31  DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLC 89
           +N  K   +    LV  YAPWC  C+ +   YE+L      +  V + K   D + K   
Sbjct: 356 ENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG-VKVAKFRADGDQKEFA 414

Query: 90  S-KYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEALAEYVN 127
             +  +  +PTI  FPK S  P KY    R  ++L  +VN
Sbjct: 415 KQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVN 454

Length = 457

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 51.5 bits (123), Expect = 7e-09
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC---SKYGVQGYPTI 100
           LV FYAPWC  C+ L P   +L       K V    VD DE  +L     +YGV G PT+
Sbjct: 1   LVLFYAPWCPFCQALRPVLAEL---ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTL 57

Query: 101 QWFPKG 106
             F  G
Sbjct: 58  VVFGPG 63

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|233769 TIGR02187, GlrX_arch, Glutaredoxin-like domain protein

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 32/205 (15%)

Query: 51  WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 110
           +C   ++L  E  ++    K    + I   D  E K    KYGV+  PT     +G    
Sbjct: 36  YCKETEQLLEELSEVSPKLK----LEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGG 91

Query: 111 KKYEGPRSTEALAEYVNN-----EGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVE 165
            +Y G  +    A  + +     +G        +    V        E++    + V +E
Sbjct: 92  IRYTGIPAGYEFAALIEDIVRVSQGEPG-----LSEKTV--------ELLQSLDEPVRIE 138

Query: 166 -FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL-DADKYKDLAEKYGVSGFPTLKFFP 223
            F  P C +C    P    +A  F L +D ++  + +A++  DLAEKYGV   P +    
Sbjct: 139 VFVTPTCPYC----PYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVI-- 192

Query: 224 KGNKDGEEYGGGRDLEDFVSFINEK 248
             NK  EE+ G    E F+ +I   
Sbjct: 193 --NKGVEEFVGAYPEEQFLEYILSA 215

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. Length = 215

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLA-EKYGVSG 215
           + +  LV  YAPWC  C+ +  +YE++A        V VA   AD   K+ A ++  +  
Sbjct: 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLA-GSGVKVAKFRADGDQKEFAKQELQLGS 422

Query: 216 FPTLKFFPKGNKDGEEYGG-GRDLEDFVSFIN 246
           FPT+  FPK +    +Y    RD++  +SF+N
Sbjct: 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVN 454

Length = 457

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTL 219
           LV FYAPWC  C+ L P   ++A        V    +D D+   L +   +YGV G PTL
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLN---KGVKFEAVDVDEDPALEKELKRYGVGGVPTL 57

Query: 220 KFFPKGNK 227
             F  G  
Sbjct: 58  VVFGPGIG 65

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 147 TADNFDEIVLDKSKDVLV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           + + F+E++   +  +LV  F+APW   CK +   +E++A        V+  +++A++  
Sbjct: 1   SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPS--VLFLSIEAEELP 58

Query: 206 DLAEKYGVSGFPTLKFFPKG 225
           +++EK+ ++  PT  FF  G
Sbjct: 59  EISEKFEITAVPTFVFFRNG 78

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
           +LV + +P CG C+ L P   KV   F  +  V    +D D+ +++AE  G+ G PT++F
Sbjct: 16  ILVLYTSPTCGPCRTLKPILNKVIDEF--DGAVHFVEIDIDEDQEIAEAAGIMGTPTVQF 73

Query: 222 F 222
           F
Sbjct: 74  F 74

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 21/82 (25%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY------------- 204
           + K V V+F A WC  C        KV       D  V A L  D               
Sbjct: 10  QGKPVFVDFTADWCVTC--------KVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEI 61

Query: 205 KDLAEKYGVSGFPTLKFFPKGN 226
             L +++GV G PT  F+  G 
Sbjct: 62  TALLKRFGVFGPPTYLFYGPGG 83

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDV-----VVANLDADKYKDLAEKY 211
           K+K V+++FYA WC  CK     T+        L+D V     V AN  A     L ++ 
Sbjct: 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAI--TALLKRL 530

Query: 212 GVSGFPTLKFFPKGNKDGE 230
           GV G PT  FF     + E
Sbjct: 531 GVFGVPTYLFFGPQGSEPE 549

Length = 569

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--GYPTIQ 101
           LV  YAPWC  C+ +   Y +L         V + K   D  +   +K  +Q   +PTI 
Sbjct: 375 LVVLYAPWCPFCQAMEASYLELAEKL-AGSGVKVAKFRADGDQKEFAKQELQLGSFPTIL 433

Query: 102 WFPKGSLEPKKYEGP-RSTEALAEYVN 127
           +FPK S  P KY    R  ++L  +VN
Sbjct: 434 FFPKHSSRPIKYPSEKRDVDSLMSFVN 460

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%)

Query: 126 VNNEGGTNVKIAAVPSNVVVLTADNFDEIV-LDKSKDV-LVEFYAPWCGHCKNLAPTYEK 183
           VN  G   V      +NVV L+    + ++ L++ K+  LV  YAPWC  C+ +  +Y +
Sbjct: 336 VNGNGSDAVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLE 395

Query: 184 VAAAFTLEDDVVVA-NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY-GGGRDLEDF 241
           +A         V     D D+ +   ++  +  FPT+ FFPK +    +Y    RD++  
Sbjct: 396 LAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSL 455

Query: 242 VSFIN 246
           +SF+N
Sbjct: 456 MSFVN 460

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 17/87 (19%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL--------EDDVVVANLDADKYK---- 205
             K VLV F+A WC  C+  +PT  ++AA + +        +D  V   +    Y     
Sbjct: 19  SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVI 78

Query: 206 -----DLAEKYGVSGFPTLKFFPKGNK 227
                 ++ ++GVS  P +     G  
Sbjct: 79  NDPDGVISARWGVSVTPAIVIVDPGGI 105

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 36  EVGQDRG--ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYG 93
           EV    G   LVEFYA WC  C+++AP+  KL   +    + ++  VD  +      +Y 
Sbjct: 14  EVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYR 73

Query: 94  VQGYPTIQWF 103
           V G P   + 
Sbjct: 74  VDGIPHFVFL 83

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142

>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 140 PSNVVVLTADNFDEIVLDKSKDV--LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 197
           P ++   T    +E  L++ K V  LVEF+  W   C N AP + +++  +   +++   
Sbjct: 27  PEHIKYFTPKTLEEE-LERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFG 84

Query: 198 NLDADKYKDLAEKYGVSG------FPTLKFFPKG 225
            +D  ++ ++AEK+ VS        PT+  F  G
Sbjct: 85  KIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGG 118

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. Length = 152

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS 87
           L          + +  LV+F+APWC  C+  AP  E+L   +     V+   VD DE+  
Sbjct: 20  LDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVD-DENPD 78

Query: 88  LCSKYG--VQGYPTI 100
           L +++G  V+  PT+
Sbjct: 79  LAAEFGVAVRSIPTL 93

Length = 127

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 16/104 (15%)

Query: 38  GQDRGALVEFYAPWCGHCKKLAPEYEKLGA--SFKKAKSVLIGKVDCDEHKSLCS----- 90
           G  +  LV F  P C +CKKL  E  K      + K   V+I  V+ D+ K +       
Sbjct: 3   GNGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIY-VNVDDSKEVTDFDGET 61

Query: 91  --------KYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
                   KYGV+G PTI +      E  +  G    E   + +
Sbjct: 62  LSEKELARKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFLKLL 105

Length = 105

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 25/91 (27%)

Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLD-------------------- 200
           VLV F+A WC  C+   P  E +A  +  +   VV  N+D                    
Sbjct: 22  VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPV 81

Query: 201 -ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
             D   +LA+ YGV G PT       ++DG 
Sbjct: 82  LLDPDGELAKAYGVRGLPTTFLI---DRDGR 109

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 21/90 (23%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEK-------VAAAFT----LEDDVVVANLDADKYKD 206
           K K V+++ YA WC  CK     +EK       V  A      L+ D V AN   D    
Sbjct: 473 KGKPVMLDLYADWCVACKE----FEKYTFSDPQVQQALADTVLLQAD-VTANNAED--VA 525

Query: 207 LAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 236
           L + Y V G PT+ FF   +  G+E    R
Sbjct: 526 LLKHYNVLGLPTILFF---DAQGQEIPDAR 552

Length = 571

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL---DADKYKDLAEKYGV 213
            K + V++EF     G    + PT  K++      +DVV   +   + D   +L  +  +
Sbjct: 13  AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKI 69

Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDL 238
              P   F+  G K  EE G G D 
Sbjct: 70  IEVPHFLFYKDGEKIHEEEGIGPDE 94

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCK---KLAPEYEKLGASFKKAKSVLIGKV--DCDE 84
           E    + + Q +   V+F A WC  CK   K+     ++ A+ KK   +L      +  E
Sbjct: 1   EAALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPE 60

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEP 110
             +L  ++GV G PT  ++  G    
Sbjct: 61  ITALLKRFGVFGPPTYLFYGPGGEPE 86

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 38  GQDRGALVEFYAPWCGHCKKLAPEYEKLGAS-----FKKAKSVLIGKVDC----DEHKSL 88
            + +  +++FYA WC  CK    E EK   S           VL+ + D         +L
Sbjct: 472 AKAKPVMLDFYADWCVTCK----ENEKYTFSDPQVQQALQDVVLL-QADVTANDPAITAL 526

Query: 89  CSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
             + GV G PT  +F     EP+   G  + +A  E++
Sbjct: 527 LKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHL 564

Length = 569

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K +LV+F A WC  C+ L   +        L +  V+  +D           G  G P +
Sbjct: 18  KPLLVDFGADWCPTCQALDRDFLSDPRVKALAEKFVLLRVDVTTRDPNLLLDG-QGVPHV 76

Query: 220 KFFPK 224
            F   
Sbjct: 77  VFLDP 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

>gnl|CDD|239304 cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC-SKYGVQGYPTIQW 102
           LV +YAPW    +    E+E+   + K +  VL   ++C   +  C  +     +P I  
Sbjct: 33  LVMYYAPWDAQSQAARQEFEQ--VAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHL 90

Query: 103 FPKGSLEPKKYEGPRST 119
           + + S  P +Y+GP   
Sbjct: 91  YYR-SRGPIEYKGPMRA 106

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. Length = 113

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 40  DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
           DR  LV + +P CG C+ L P   K+   F  A  V   ++D DE + +    G+ G PT
Sbjct: 13  DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA--VHFVEIDIDEDQEIAEAAGIMGTPT 70

Query: 100 IQWF 103
           +Q+F
Sbjct: 71  VQFF 74

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 26/83 (31%)

Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD--------------- 206
           VL+ F+A WC  C+   P  +++      +  V +  +  D+ ++               
Sbjct: 4   VLLYFWASWCPPCRAFTPELKELYEKLK-KPKVEIVYVSLDRDEEEWKKYLKKMPKDWLN 62

Query: 207 ----------LAEKYGVSGFPTL 219
                     L   YGV   PTL
Sbjct: 63  VPFGDKERNELLRLYGVKAIPTL 85

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 22/78 (28%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG----------------------KVD 81
           LV F+A WC  C+   PE E L   +K     ++G                       V 
Sbjct: 23  LVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVL 82

Query: 82  CDEHKSLCSKYGVQGYPT 99
            D    L   YGV+G PT
Sbjct: 83  LDPDGELAKAYGVRGLPT 100

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|233769 TIGR02187, GlrX_arch, Glutaredoxin-like domain protein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 171 CGHCKNLAPTYEKVAAAFTLEDD---VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 227
           C +CK      E++    +       + + + D  + K+ AEKYGV   PT     +G  
Sbjct: 34  CQYCKET----EQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKD 89

Query: 228 DGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVK 274
            G  Y G     +F + I +    S+   G    T  ++ SLD  V+
Sbjct: 90  GGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVR 136

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. Length = 215

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKY 92
          L+ F+A WC  C+   PE ++L    KK K  ++  V  D  +    KY
Sbjct: 5  LLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVY-VSLDRDEEEWKKY 52

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239304 cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 134 VKIAAVPSNVVVLTADNFD--EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE 191
           V   +  S V+       D  E +   ++  LV +YAPW    +     +E+VA    L 
Sbjct: 2   VPFFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQ--KLS 59

Query: 192 DDVVVANLDA-DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR--DLEDFV 242
           D V+   ++         ++     FP +  + +     E  G  R   +E FV
Sbjct: 60  DQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. Length = 113

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 152 DEIVLDKSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKYKDLAE 209
           +EIV    K   L++  + WC  C ++ P +++V     LE   V +A ++A   + LA 
Sbjct: 16  NEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQ--ELEPLGVGIATVNAGHERRLAR 73

Query: 210 KYGVSGFPTL 219
           K G    P +
Sbjct: 74  KLGAHSVPAI 83

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	100.0
PTZ00102	477	disulphide isomerase; Provisional	100.0
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.97
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.96
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.9
PF07749	95	ERp29: Endoplasmic reticulum protein ERp29, C-term	99.89
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.88
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.88
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.88
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.87
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.87
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.87
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.87
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.86
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.86
cd00238	93	ERp29c ERp29 and ERp38, C-terminal domain; compose	99.86
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.86
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.85
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.85
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.85
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.84
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.84
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.84
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.84
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.84
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.83
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.83
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.83
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.83
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.83
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.82
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.82
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.82
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.82
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.81
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.81
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.81
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.81
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.81
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.81
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.8
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.8
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.8
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.8
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.8
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.8
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.8
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.79
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.79
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.79
PRK09381	109	trxA thioredoxin; Provisional	99.79
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.79
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.78
PRK09381	109	trxA thioredoxin; Provisional	99.78
PHA02278	103	thioredoxin-like protein	99.78
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.78
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.78
PHA02278	103	thioredoxin-like protein	99.77
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.77
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.77
PRK10996	139	thioredoxin 2; Provisional	99.77
PTZ00062	204	glutaredoxin; Provisional	99.76
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.76
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.76
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.76
PRK10996	139	thioredoxin 2; Provisional	99.75
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.75
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.75
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.75
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.75
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.74
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.74
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.73
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.73
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.73
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.73
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.73
PLN02309	457	5'-adenylylsulfate reductase	99.73
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.73
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.72
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.71
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.71
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.71
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.71
PLN02309	457	5'-adenylylsulfate reductase	99.71
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.71
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.71
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.71
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.7
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.7
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.7
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.7
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.69
PTZ00102	477	disulphide isomerase; Provisional	99.69
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.68
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.68
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.68
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.67
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.67
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.67
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.66
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.65
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.65
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.64
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.64
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.63
PTZ00051	98	thioredoxin; Provisional	99.63
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.62
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.61
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.6
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.6
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.6
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.59
PTZ00051	98	thioredoxin; Provisional	99.59
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.58
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.58
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.58
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.57
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.55
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.54
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.53
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.52
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.5
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.5
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.48
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.48
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.45
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.45
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.44
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.41
PTZ00062	204	glutaredoxin; Provisional	99.41
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.41
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.41
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.41
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.4
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.39
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.37
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.37
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.34
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.33
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.32
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.32
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.28
PHA02125	75	thioredoxin-like protein	99.28
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	99.28
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.27
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.26
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.25
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.24
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.22
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.22
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.22
PHA02125	75	thioredoxin-like protein	99.21
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.2
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.2
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.18
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.18
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.18
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.17
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.17
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.17
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.16
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.16
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.15
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.15
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.14
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.14
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.13
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.13
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.13
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.12
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.12
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.11
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.1
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.1
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.1
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.08
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.08
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.08
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.07
COG2143	182	Thioredoxin-related protein [Posttranslational mod	99.05
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.05
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
smart00594	122	UAS UAS domain.	99.01
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	99.01
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.99
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.98
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.97
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.95
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.95
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.94
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.94
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.94
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.94
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.91
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.9
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.9
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.87
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.85
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.85
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.84
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.82
PTZ00056	199	glutathione peroxidase; Provisional	98.8
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.78
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.78
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.78
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.76
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.75
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.74
smart00594	122	UAS UAS domain.	98.74
PTZ00056	199	glutathione peroxidase; Provisional	98.71
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.71
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.7
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.68
PLN02412	167	probable glutathione peroxidase	98.67
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.65
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.63
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.63
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.62
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	98.58
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.56
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.56
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.56
PLN02412	167	probable glutathione peroxidase	98.56
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.55
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.55
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.54
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.53
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.52
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.46
PF13728	215	TraF: F plasmid transfer operon protein	98.43
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.41
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.4
PTZ00256	183	glutathione peroxidase; Provisional	98.39
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.36
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.35
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.34
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.32
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.31
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.31
PF13728	215	TraF: F plasmid transfer operon protein	98.3
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.29
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.29
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.28
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.27
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.26
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.26
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.26
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.26
PTZ00256	183	glutathione peroxidase; Provisional	98.22
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.22
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.2
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.2
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.2
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.2
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.2
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.18
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.16
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.16
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.15
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.15
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.14
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.14
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.13
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.13
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.12
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.11
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	98.11
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.1
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.09
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.09
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.05
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.05
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.04
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.03
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.02
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.0
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.99
PRK13190	202	putative peroxiredoxin; Provisional	97.97
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.96
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.96
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.96
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.95
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.92
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.92
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.9
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.89
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.89
PRK15000	200	peroxidase; Provisional	97.88
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.88
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.86
PRK11200	85	grxA glutaredoxin 1; Provisional	97.85
PRK13190	202	putative peroxiredoxin; Provisional	97.85
KOG1672	211	consensus ATP binding protein [Posttranslational m	97.85
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	97.85
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.84
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.82
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.8
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.8
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.78
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.75
PRK15000	200	peroxidase; Provisional	97.75
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.75
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.72
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.7
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.67
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.65
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.63
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.63
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.62
PRK11200	85	grxA glutaredoxin 1; Provisional	97.6
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.6
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.59
PRK13189	222	peroxiredoxin; Provisional	97.57
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.56
PRK13599	215	putative peroxiredoxin; Provisional	97.53
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.52
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.52
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.52
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.5
PRK13191	215	putative peroxiredoxin; Provisional	97.48
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.47
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.45
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.4
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.39
PRK13189	222	peroxiredoxin; Provisional	97.38
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.34
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.34
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.34
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.33
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.32
PRK13599	215	putative peroxiredoxin; Provisional	97.32
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.32
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.3
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.3
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.29
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.25
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.25
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.24
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.23
KOG3425	128	consensus Uncharacterized conserved protein [Funct	97.22
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.22
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.22
PRK13191	215	putative peroxiredoxin; Provisional	97.21
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.16
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.14
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.14
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	97.13
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.1
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.07
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.02
KOG2640	319	consensus Thioredoxin [Function unknown]	97.02
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.93
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	96.88
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	96.85
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.83
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.82
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.8
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.76
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.75
PRK10329	81	glutaredoxin-like protein; Provisional	96.67
PHA03050	108	glutaredoxin; Provisional	96.62
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.59
PHA03050	108	glutaredoxin; Provisional	96.57
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.57
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.53
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.49
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.48
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.48
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.48
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	96.47
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.39
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.34
PRK10329	81	glutaredoxin-like protein; Provisional	96.33
KOG3171	273	consensus Conserved phosducin-like protein [Signal	96.33
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	96.3
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.11
KOG3170	240	consensus Conserved phosducin-like protein [Signal	96.04
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	95.97
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	95.92
KOG3171	273	consensus Conserved phosducin-like protein [Signal	95.84
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	95.82
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	95.8
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	95.72
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	95.7
KOG2640	319	consensus Thioredoxin [Function unknown]	95.61
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	95.59
PRK10638	83	glutaredoxin 3; Provisional	95.58
COG1331	667	Highly conserved protein containing a thioredoxin	95.52
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	95.5
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	95.43
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	95.4
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	95.37
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	95.29
PRK10638	83	glutaredoxin 3; Provisional	95.29
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	95.1
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	94.96
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	94.81
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	94.56
PRK10824	115	glutaredoxin-4; Provisional	94.28
KOG3170	240	consensus Conserved phosducin-like protein [Signal	94.04
PRK10824	115	glutaredoxin-4; Provisional	93.75
COG1331	667	Highly conserved protein containing a thioredoxin	93.66
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	93.62
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	93.58
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	93.34
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	92.84
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	92.8
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	92.48
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	92.45
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	91.94
cd02978	72	KaiB_like KaiB-like family; composed of the circad	91.73
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	91.7
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	91.62
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	90.23
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	90.21
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	89.61
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	88.39
PRK09301	103	circadian clock protein KaiB; Provisional	88.06
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	87.96
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	86.93
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	86.06
COG3019	149	Predicted metal-binding protein [General function	85.03
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	84.93
COG3019	149	Predicted metal-binding protein [General function	84.62
cd02978	72	KaiB_like KaiB-like family; composed of the circad	84.53
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	82.7
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	81.29
PHA03075	123	glutaredoxin-like protein; Provisional	81.18
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	81.0
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	80.81
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	80.46
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	80.35

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.1e-42  Score=314.55  Aligned_cols=227  Identities=47%  Similarity=0.886  Sum_probs=207.0

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCe
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ....|..||.+||.+.+..+..++|.||||||+||+++.|+|+++|+.++.. ..+.+++|||+++.++|.+|+|.+|||
T Consensus        23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT  102 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT  102 (493)
T ss_pred             cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence            4678999999999999999999999999999999999999999999999865 489999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccCCCCcccc------------------------------------------
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIA------------------------------------------  137 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~------------------------------------------  137 (358)
                      +.+|++|.. +..|.|+|++++|+.|+....++.....                                          
T Consensus       103 lkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~  181 (493)
T KOG0190|consen  103 LKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDY  181 (493)
T ss_pred             EEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccc
Confidence            999999976 5899999999999999999888775310                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 018270          138 --------------------------------------------------------------------------------  137 (358)
Q Consensus       138 --------------------------------------------------------------------------------  137 (358)
                                                                                                      
T Consensus       182 ~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~  261 (493)
T KOG0190|consen  182 KFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDF  261 (493)
T ss_pred             eeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeE
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 018270          138 --------------------------------------------------------------------------------  137 (358)
Q Consensus       138 --------------------------------------------------------------------------------  137 (358)
                                                                                                      
T Consensus       262 ~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f  341 (493)
T KOG0190|consen  262 FVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESF  341 (493)
T ss_pred             EeccccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------C----C-CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEE
Q 018270          138 ----------------A----V-PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV  196 (358)
Q Consensus       138 ----------------~----~-~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~  196 (358)
                                      +    . .+.|..+.++||+.++.+.++.|+|.||||||+||+++.|.|++||+.|++++++++
T Consensus       342 ~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vvi  421 (493)
T KOG0190|consen  342 VKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVI  421 (493)
T ss_pred             HHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEE
Confidence                            1    1 145899999999999999999999999999999999999999999999999889999


Q ss_pred             EEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcC
Q 018270          197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       197 ~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +++|++.|+  .....+++||||++|+.|++ .++.|.|+|+.++|..|+.+..+
T Consensus       422 AKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  422 AKMDATAND--VPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             EEecccccc--CccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence            999999887  45667888999999999986 69999999999999999987544

>PTZ00102 disulphide isomerase; Provisional

Probab=100.00  E-value=2e-35  Score=283.17  Aligned_cols=227  Identities=37%  Similarity=0.797  Sum_probs=199.0

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..+..++.++|++.++++++++|.||++||++|+++.|.|.+++..++.. .++.++.|||+++.++|++|+|.++||++
T Consensus        32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~  111 (477)
T PTZ00102         32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK  111 (477)
T ss_pred             CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence            46899999999999988999999999999999999999999999888643 47999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccCCCCccc---------------------------------------------
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKI---------------------------------------------  136 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~---------------------------------------------  136 (358)
                      +|++|+.  ..|.|.++.+++.+|+.+..++....                                             
T Consensus       112 ~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~  189 (477)
T PTZ00102        112 FFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAK  189 (477)
T ss_pred             EEECCce--EEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccce
Confidence            9998864  38999999999999887654322100                                             


Q ss_pred             ------------------------------------------c-------------------------------------
Q 018270          137 ------------------------------------------A-------------------------------------  137 (358)
Q Consensus       137 ------------------------------------------~-------------------------------------  137 (358)
                                                                +                                     
T Consensus       190 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (477)
T PTZ00102        190 FFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCGTTEDYDKYKSVV  269 (477)
T ss_pred             EEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEecCHHHHHHHHHHH
Confidence                                                      0                                     


Q ss_pred             --------------------------------------------------------------------------------
Q 018270          138 --------------------------------------------------------------------------------  137 (358)
Q Consensus       138 --------------------------------------------------------------------------------  137 (358)
                                                                                                      
T Consensus       270 ~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se  349 (477)
T PTZ00102        270 RKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSE  349 (477)
T ss_pred             HHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccC
Confidence                                                                                            


Q ss_pred             CC----CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCC
Q 018270          138 AV----PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV  213 (358)
Q Consensus       138 ~~----~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v  213 (358)
                      +.    ...+..+++.+|++.+.+.+++++|.|||+||++|+.+.|.|+++++.++..+.+.++.+|++.++..++.|++
T Consensus       350 ~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v  429 (477)
T PTZ00102        350 PIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW  429 (477)
T ss_pred             CCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC
Confidence            00    12367788999999887889999999999999999999999999999997666899999999999999999999


Q ss_pred             CcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       214 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      +++||+++|++|++.+..|.|.++.+.+.+||++++..
T Consensus       430 ~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        430 SAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN  467 (477)
T ss_pred             cccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence            99999999999887778899999999999999998753

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-32  Score=252.01  Aligned_cols=225  Identities=51%  Similarity=0.873  Sum_probs=197.8

Q ss_pred             CeEEcChhhHHH-HhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVLTEDNFEK-EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l~~~~f~~-~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ....++..+|.. ....+.+++|+||+|||+||+.+.|+|.+++..++  +.+.++.|||+++.++|.+|+|.++||+.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~--~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~  107 (383)
T KOG0191|consen   30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALK--GKVKIGAVDCDEHKDLCEKYGIQGFPTLKV  107 (383)
T ss_pred             chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhc--CceEEEEeCchhhHHHHHhcCCccCcEEEE
Confidence            334444444444 44888999999999999999999999999999998  479999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHH
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYE  182 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~  182 (358)
                      |.++ ..+..|.|.++.+.+.+|............... .+..++..+|+..+.+.+..++|.||+|||++|+.+.|.|+
T Consensus       108 f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~  185 (383)
T KOG0191|consen  108 FRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEG-EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWE  185 (383)
T ss_pred             EcCC-CceeeccCcccHHHHHHHHHHhhccccccccCC-ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHH
Confidence            9998 556899999999999999998777655432222 58899999999999888999999999999999999999999


Q ss_pred             HHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          183 KVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       183 ~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +++..+.....+.++.+|++....++.+++|.++||+.+|++|......|.|.++.+.++.|+++..+..
T Consensus       186 ~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  186 KLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             HHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence            9999997667899999999999999999999999999999988653566788999999999999987764

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.97  E-value=1.8e-30  Score=248.10  Aligned_cols=226  Identities=50%  Similarity=0.932  Sum_probs=191.6

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      .+..+++++|.++++++++++|.|||+||++|+.+.|.|.++++.+.+. ..+.++.|||++++++|++|+|.++||+++
T Consensus         2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~   81 (462)
T TIGR01130         2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI   81 (462)
T ss_pred             CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence            5788999999999999999999999999999999999999999988643 469999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhccCCCCccc----------------------------------------------
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKI----------------------------------------------  136 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~----------------------------------------------  136 (358)
                      |.+|+.....|.|.++.+++.+|+.+..++....                                              
T Consensus        82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~  161 (462)
T TIGR01130        82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF  161 (462)
T ss_pred             EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence            9887652478888888888887776544322100                                              


Q ss_pred             ---------------------------------c----------------------------------------------
Q 018270          137 ---------------------------------A----------------------------------------------  137 (358)
Q Consensus       137 ---------------------------------~----------------------------------------------  137 (358)
                                                       .                                              
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~  241 (462)
T TIGR01130       162 FAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYY  241 (462)
T ss_pred             EEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCCCceeEEE
Confidence                                             0                                              


Q ss_pred             --------------------------------------------------------------------------------
Q 018270          138 --------------------------------------------------------------------------------  137 (358)
Q Consensus       138 --------------------------------------------------------------------------------  137 (358)
                                                                                                      
T Consensus       242 ~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~  321 (462)
T TIGR01130       242 NVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEA  321 (462)
T ss_pred             EecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------CC----CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC-CCCeE
Q 018270          138 -----------------AV----PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVV  195 (358)
Q Consensus       138 -----------------~~----~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~-~~~v~  195 (358)
                                       +.    ...+..++..+|++.+.+.+++++|.||++||++|+.+.|.++++++.+.. +..+.
T Consensus       322 fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~  401 (462)
T TIGR01130       322 FVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVV  401 (462)
T ss_pred             HHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEE
Confidence                             11    225677888999998878889999999999999999999999999999975 33799


Q ss_pred             EEEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcCC
Q 018270          196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       196 ~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      ++.+|++.+. +.. +++.++||+++|++|++ .+..|.|.++.+.|.+||.++...
T Consensus       402 ~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  456 (462)
T TIGR01130       402 IAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF  456 (462)
T ss_pred             EEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence            9999999775 333 99999999999999876 578899999999999999987643

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.96  E-value=1.8e-28  Score=209.20  Aligned_cols=200  Identities=25%  Similarity=0.318  Sum_probs=158.4

Q ss_pred             hhHHHHhcCCCcEEEEEEC---CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           31 DNFEKEVGQDRGALVEFYA---PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya---~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      +.|.+.++++. .++.|++   +||++|+.+.|.++++++.+.. -.+.++.+|.+++++++++|+|.++||+++|++|.
T Consensus        11 ~~~~~~~~~~~-~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~   88 (215)
T TIGR02187        11 ELFLKELKNPV-EIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK   88 (215)
T ss_pred             HHHHHhcCCCe-EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe
Confidence            34444454444 4666888   9999999999999999998842 24667788888999999999999999999999876


Q ss_pred             CCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCc-EEEEEcCCCCcccchhhhhHHHHHH
Q 018270          108 LEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAA  186 (358)
Q Consensus       108 ~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~-v~v~f~a~~C~~c~~~~~~~~~la~  186 (358)
                      ....++.|..+.+++.+||+...+....       ...++..+.+.+- ...++ +++.||++||++|+.+.|.+++++.
T Consensus        89 ~~~~~~~G~~~~~~l~~~i~~~~~~~~~-------~~~L~~~~~~~l~-~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~  160 (215)
T TIGR02187        89 DGGIRYTGIPAGYEFAALIEDIVRVSQG-------EPGLSEKTVELLQ-SLDEPVRIEVFVTPTCPYCPYAVLMAHKFAL  160 (215)
T ss_pred             eeEEEEeecCCHHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHH-hcCCCcEEEEEECCCCCCcHHHHHHHHHHHH
Confidence            5435889999999999999877543211       1244555555544 33444 5566999999999999999999988


Q ss_pred             HhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          187 AFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       187 ~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      ..   +++.+..+|.+.+++++++|+|.++||++++.+|.    .+.|..+.++|.+||.+
T Consensus       161 ~~---~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       161 AN---DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             hc---CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence            74   57889999999999999999999999999987652    38899999999999874

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.90  E-value=4.1e-23  Score=156.17  Aligned_cols=105  Identities=19%  Similarity=0.406  Sum_probs=95.0

Q ss_pred             hccCCCeEEcChhhHHHH---hcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH-hhcCc
Q 018270           19 SALADDVVVLTEDNFEKE---VGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC-SKYGV   94 (358)
Q Consensus        19 ~~~~~~v~~l~~~~f~~~---~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~-~~~~i   94 (358)
                      ++..+.|.+|++++|++.   ++++++++|.|||+||+||+.+.|.|+++++.++  +.+.|++|||+++.++| ++|+|
T Consensus         5 ~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~--~~v~~~~Vd~d~~~~l~~~~~~I   82 (113)
T cd03006           5 FSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS--DQVLFVAINCWWPQGKCRKQKHF   82 (113)
T ss_pred             cCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCChHHHHHhcCC
Confidence            455678999999999987   4889999999999999999999999999999997  45999999999999999 58999


Q ss_pred             cCCCeEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270           95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      .++||+++|.+|.. +..|.|.++.+.|..|+
T Consensus        83 ~~~PTl~lf~~g~~-~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          83 FYFPVIHLYYRSRG-PIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             cccCEEEEEECCcc-ceEEeCCCCHHHHHhhC
Confidence            99999999987764 58999999999999874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []

Probab=99.89  E-value=4.5e-23  Score=150.09  Aligned_cols=95  Identities=41%  Similarity=0.667  Sum_probs=86.6

Q ss_pred             cchhhHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhccCChhh
Q 018270          264 GIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAK  343 (358)
Q Consensus       264 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~~~  343 (358)
                      |+++++|.++..|+...++.+.+++++++..+..+++....+++||+++|+||+++|.+|+++|++||++||+++++++|
T Consensus         1 G~i~~lD~la~~f~~~~~~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E~~RL~~lL~~~l~~~K   80 (95)
T PF07749_consen    1 GRIEELDELAAEFVAASDDEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKEIARLERLLEGKLSPEK   80 (95)
T ss_dssp             T--HHHHHHHHHHHHS-CHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHHHHHHHHHHHSSS-HHH
T ss_pred             CchHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHHHHHHHHHHhccCCHHH
Confidence            68899999999999998888999999999999999887779999999999999999999999999999999999999999


Q ss_pred             hhhhHHhhhhhcccC
Q 018270          344 ADEFVLKKNILSTFT  358 (358)
Q Consensus       344 ~~~~~~~~nil~~f~  358 (358)
                      +|+|++|+|||++|.
T Consensus        81 ~del~~R~NIL~~F~   95 (95)
T PF07749_consen   81 KDELQKRLNILSSFQ   95 (95)
T ss_dssp             HHHHHHHHHHHHCTS
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999995

This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.88  E-value=1.1e-21  Score=165.16  Aligned_cols=221  Identities=26%  Similarity=0.490  Sum_probs=150.4

Q ss_pred             ChhHHHHHHHHHHHHHhhhc-----cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCC-c
Q 018270            1 MERYQIWLALGTLTLFFVSA-----LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAK-S   74 (358)
Q Consensus         1 M~~~~~~~~~~~~~~~~~~~-----~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~-~   74 (358)
                      |..+.++-++-+++++++..     ....|.+|++ .|.+ .+.+..|+|.||||||+||+++.|.|.++.-.+++.+ .
T Consensus         1 Maaw~~~~aLrLca~l~VlDm~ackgpt~VeDLdd-kFkd-nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~P   78 (468)
T KOG4277|consen    1 MAAWFLLPALRLCALLFVLDMEACKGPTAVEDLDD-KFKD-NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLP   78 (468)
T ss_pred             CchhhhhHHHHHhhhheeeeeeccCCchhhhhhhH-Hhhh-cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCc
Confidence            66665555444444443322     1224555553 3433 2456789999999999999999999999999888654 8


Q ss_pred             eEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCccc--HH
Q 018270           75 VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADN--FD  152 (358)
Q Consensus        75 v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~--f~  152 (358)
                      |.++++||+.-+.++.+|+|++||||.+|+++  ..+.|.|+|..+.|.+|..+..++-..         .++.++  |.
T Consensus        79 ikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~a~dYRG~R~Kd~iieFAhR~a~aiI~---------pi~enQ~~fe  147 (468)
T KOG4277|consen   79 IKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--HAIDYRGGREKDAIIEFAHRCAAAIIE---------PINENQIEFE  147 (468)
T ss_pred             eeecccccccchhhHhhhccCCCceEEEecCC--eeeecCCCccHHHHHHHHHhcccceee---------ecChhHHHHH
Confidence            99999999999999999999999999999877  458999999999999999887654332         244333  33


Q ss_pred             HHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcC-CCcccEEEEEeCCCcceee
Q 018270          153 EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG-VSGFPTLKFFPKGNKDGEE  231 (358)
Q Consensus       153 ~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pti~~~~~g~~~~~~  231 (358)
                      + ++...++.+|.|.+.-.    .+...|.+.|..     .+.++..-.. ..+++-.++ ....|.+.+|++..   +.
T Consensus       148 h-lq~Rhq~ffVf~Gtge~----PL~d~fidAASe-----~~~~a~FfSa-seeVaPe~~~~kempaV~VFKDet---f~  213 (468)
T KOG4277|consen  148 H-LQARHQPFFVFFGTGEG----PLFDAFIDAASE-----KFSVARFFSA-SEEVAPEENDAKEMPAVAVFKDET---FE  213 (468)
T ss_pred             H-HhhccCceEEEEeCCCC----cHHHHHHHHhhh-----heeeeeeecc-ccccCCcccchhhccceEEEccce---eE
Confidence            3 34677888888876531    233344444443     2334433221 122233332 34589999998752   33


Q ss_pred             ecCCCCHHHHHHHHHHh
Q 018270          232 YGGGRDLEDFVSFINEK  248 (358)
Q Consensus       232 ~~g~~~~~~l~~~i~~~  248 (358)
                      .....+.++|.+||++.
T Consensus       214 i~de~dd~dLseWinRE  230 (468)
T KOG4277|consen  214 IEDEGDDEDLSEWINRE  230 (468)
T ss_pred             EEecCchhHHHHHHhHh
Confidence            34456788999999864

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.88  E-value=3e-22  Score=151.45  Aligned_cols=103  Identities=19%  Similarity=0.316  Sum_probs=92.7

Q ss_pred             CCCceEcCcccHHHHH--hcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHH-HhcCCCcc
Q 018270          140 PSNVVVLTADNFDEIV--LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA-EKYGVSGF  216 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~--~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~-~~~~v~~~  216 (358)
                      .+.+++++..+|++.+  ...++.++|.||||||++|+.+.|.|+++|+.++  +.+.|++|||+.+.+++ ++|+|.++
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~--~~v~~~~Vd~d~~~~l~~~~~~I~~~   85 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS--DQVLFVAINCWWPQGKCRKQKHFFYF   85 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCChHHHHHhcCCccc
Confidence            4568999999999873  3788999999999999999999999999999995  45899999999999999 58999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      ||+.+|++|. .+..|.|.++.+.|..|+
T Consensus        86 PTl~lf~~g~-~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          86 PVIHLYYRSR-GPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             CEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence            9999998875 678899999999999874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.88  E-value=7.4e-22  Score=148.12  Aligned_cols=100  Identities=35%  Similarity=0.791  Sum_probs=92.2

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      ++..+|.++|++.+..+++++|.||++||++|+.+.|.|+++++.++  +.+.|+.|||++++.+|++++|.++||+++|
T Consensus         2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   79 (101)
T cd03003           2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD--GVIRIGAVNCGDDRMLCRSQGVNSYPSLYVF   79 (101)
T ss_pred             CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc--CceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence            57899999999999888999999999999999999999999999997  5699999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHH
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      +.|.. ...|.|.++.++|.+|.
T Consensus        80 ~~g~~-~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          80 PSGMN-PEKYYGDRSKESLVKFA  101 (101)
T ss_pred             cCCCC-cccCCCCCCHHHHHhhC
Confidence            87754 58899999999998873

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.87  E-value=7.3e-22  Score=150.03  Aligned_cols=104  Identities=38%  Similarity=0.740  Sum_probs=94.0

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC----CceEEEEEeCccchhhHhhcCccCCC
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA----KSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~----~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      +++.++++++|++.++.+++++|.|||+||++|+.+.|.|+++++.+++.    +.+.++.+||++++++|++|+|+++|
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           1 SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             CceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            36789999999999988899999999999999999999999999887532    35999999999999999999999999


Q ss_pred             eEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270           99 TIQWFPKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      |+++|++|......|.|.++.++|.+||
T Consensus        81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            9999988874558899999999999986

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.87  E-value=1e-21  Score=148.28  Aligned_cols=102  Identities=34%  Similarity=0.774  Sum_probs=93.9

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      .+.+++..+|++.+.+.+++++|.||++||++|+.+.|.|+++++.+.  +.+.++.+|++++++++++|+|.++||+++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            467889999999987778899999999999999999999999999984  569999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCC-HHHHHHHH
Q 018270          222 FPKGNKDGEEYGGGRD-LEDFVSFI  245 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~-~~~l~~~i  245 (358)
                      |++|+.....|.|..+ .++|.+||
T Consensus        80 ~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          80 YPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EcCCCCCceEccCCCCCHHHHHhhC
Confidence            9998678889999987 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.87  E-value=1.1e-21  Score=149.06  Aligned_cols=103  Identities=39%  Similarity=0.721  Sum_probs=93.2

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC----CCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE----DDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~----~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      ++.++++++|++.+ ..+++++|.||+|||++|+.+.|.|+++++.++.+    +++.++.+|++.+++++++|+|+++|
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            57889999999987 77889999999999999999999999999987432    35999999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      |+++|++|......|.|.++.++|.+||
T Consensus        81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            9999998865668899999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.87  E-value=1.5e-21  Score=147.27  Aligned_cols=101  Identities=36%  Similarity=0.791  Sum_probs=92.1

Q ss_pred             CeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      .+.+++.++|++.+ ..+++++|.||++||++|+.+.|.|+++++.+.  +.+.++.+||++++++|++++|.++||+++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            56789999999987 556799999999999999999999999999986  569999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCC-HHHHHHHH
Q 018270          103 FPKGSLEPKKYEGPRS-TEALAEYV  126 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~-~~~i~~~i  126 (358)
                      |.+|+....+|.|..+ .++|.+||
T Consensus        80 ~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          80 YPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EcCCCCCceEccCCCCCHHHHHhhC
Confidence            9998566789999987 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.6e-22  Score=184.22  Aligned_cols=158  Identities=35%  Similarity=0.649  Sum_probs=127.0

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      .++.|..|+.+||+..+ ..+..++|.||||||+||+.+.|.|.++|..+... +.+..++|||+.+.++|.+|+|++||
T Consensus        23 ~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP  101 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP  101 (493)
T ss_pred             cccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence            56789999999999999 78889999999999999999999999999999755 48999999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCCCCCccccccchhhHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEV  297 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  297 (358)
                      |+.+|++|.. +..|.|+|+++.++.|+.++.|+............+....-+..+..|+.+........+..+....++
T Consensus       102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d  180 (493)
T KOG0190|consen  102 TLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDD  180 (493)
T ss_pred             eEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhcccc
Confidence            9999999964 799999999999999999999988766555555555444434444455544333224444444444444


Q ss_pred             h
Q 018270          298 L  298 (358)
Q Consensus       298 ~  298 (358)
                      +
T Consensus       181 ~  181 (493)
T KOG0190|consen  181 Y  181 (493)
T ss_pred             c
Confidence            3

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.86  E-value=3.1e-21  Score=144.72  Aligned_cols=99  Identities=32%  Similarity=0.675  Sum_probs=90.9

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      ++.+++.++|++.+ ..+++++|.||++||++|+.+.|.|+++++.++  +.+.|+.+||++++.++++|+|+++||+++
T Consensus         2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   78 (101)
T cd03003           2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD--GVIRIGAVNCGDDRMLCRSQGVNSYPSLYV   78 (101)
T ss_pred             CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc--CceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence            57789999999998 667999999999999999999999999999996  469999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHH
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSF  244 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~  244 (358)
                      |++|. ....|.|.++.++|.+|
T Consensus        79 ~~~g~-~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          79 FPSGM-NPEKYYGDRSKESLVKF  100 (101)
T ss_pred             EcCCC-CcccCCCCCCHHHHHhh
Confidence            98874 57789999999999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38

Probab=99.86  E-value=2e-21  Score=140.01  Aligned_cols=91  Identities=43%  Similarity=0.724  Sum_probs=85.8

Q ss_pred             hhHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhcc-CChhhhh
Q 018270          267 ASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKS-ISAAKAD  345 (358)
Q Consensus       267 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~-~~~~~~~  345 (358)
                      +.+|.++..|++.+++.+.++++++++.++.+++...++++||+++|+||+++|.+|+.+|++||++||+++ ++++|+|
T Consensus         2 ~~lD~la~~f~~~~~~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~d   81 (93)
T cd00238           2 EELDELAKEFVDASDEERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKELARLERLLEKKGLAPEKAD   81 (93)
T ss_pred             hhHHHHHHHHhccchhHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            568999999999888889999999999999998777899999999999999999999999999999999985 6999999


Q ss_pred             hhHHhhhhhccc
Q 018270          346 EFVLKKNILSTF  357 (358)
Q Consensus       346 ~~~~~~nil~~f  357 (358)
                      +|+.|+|||++|
T Consensus        82 el~~R~NIL~~F   93 (93)
T cd00238          82 ELTRRLNILRSF   93 (93)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999998

ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2e-21  Score=149.36  Aligned_cols=106  Identities=30%  Similarity=0.569  Sum_probs=96.8

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      .+..++..+|++.+.+.+.||+|+|||+||+||+.+.|.+++++..|.  +.+.++++|.|++.+++.+|+|.++||+++
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvlv  121 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVLV  121 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEEE
Confidence            355578899999998999999999999999999999999999999995  689999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      |++|. ....+.|..+.+.|.++|++.+.
T Consensus       122 fknGe-~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  122 FKNGE-KVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EECCE-EeeeecccCCHHHHHHHHHHHhc
Confidence            99884 45688999999999999988653

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.85  E-value=8.2e-21  Score=144.47  Aligned_cols=106  Identities=17%  Similarity=0.215  Sum_probs=95.0

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcc--cc--hhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGH--CK--NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~--c~--~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      ..+..+|.+||++.+.+.+.++++.||++||+|  |+  .+.|.+.++|..+-..+++.|++||++++++++++|||.++
T Consensus         9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i   88 (120)
T cd03065           9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE   88 (120)
T ss_pred             cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence            357889999999999888889999999999988  99  78899999999884346799999999999999999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ||+++|++|.  ...|.|.++.+.|.+||.+.
T Consensus        89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~  118 (120)
T cd03065          89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLDL  118 (120)
T ss_pred             cEEEEEECCE--EEEeeCCCCHHHHHHHHHHH
Confidence            9999999885  34599999999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.85  E-value=1.6e-20  Score=141.44  Aligned_cols=103  Identities=41%  Similarity=0.829  Sum_probs=95.0

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      |..++.++|++.+.+.+++++|.||++||++|+.+.|.|.++++.+..  ++.++.+|++++..++++|+|.++||+++|
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence            467899999999966689999999999999999999999999999964  899999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      .+|. ...+|.|.++.+.|.+||+++
T Consensus        79 ~~g~-~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   79 KNGK-EVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             ETTE-EEEEEESSSSHHHHHHHHHHH
T ss_pred             ECCc-EEEEEECCCCHHHHHHHHHcC
Confidence            9885 455899999999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=158.85  Aligned_cols=107  Identities=36%  Similarity=0.696  Sum_probs=94.1

Q ss_pred             CCCeEEcChhhHHHHhcC-----CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC
Q 018270           22 ADDVVVLTEDNFEKEVGQ-----DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG   96 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~-----~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (358)
                      ...+.++|+++|++.+..     +++++|+||++||++|+.+.|.|+++++.++  +.+.++.+||+++++++++|+|.+
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~--~~v~~~~VD~~~~~~l~~~~~I~~  106 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK--GQVNVADLDATRALNLAKRFAIKG  106 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEecCcccHHHHHHcCCCc
Confidence            356899999999998732     5799999999999999999999999999997  569999999999999999999999


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      +||+++|++|. ....+.|.++.+++.+|+.+...
T Consensus       107 ~PTl~~f~~G~-~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        107 YPTLLLFDKGK-MYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             CCEEEEEECCE-EEEeeCCCCCHHHHHHHHHHHHH
Confidence            99999999775 32445688999999999987653

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.84  E-value=1e-20  Score=142.47  Aligned_cols=102  Identities=49%  Similarity=0.967  Sum_probs=94.8

Q ss_pred             eEEcChhhHHHHhcC-CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           25 VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        25 v~~l~~~~f~~~~~~-~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      |..+|+++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+++  .+.++.||+++++.+|++|+|.++|++++|
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence            568899999999976 89999999999999999999999999999974  899999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .+|... .+|.|.++.++|.+||+++
T Consensus        79 ~~g~~~-~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   79 KNGKEV-KRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             ETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred             ECCcEE-EEEECCCCHHHHHHHHHcC
Confidence            988755 6999999999999999753

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.84  E-value=1.5e-20  Score=141.08  Aligned_cols=100  Identities=24%  Similarity=0.408  Sum_probs=87.3

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEEC--CCCh---hhhhhhHHHHHHHHHhhcCCceEEEEEeC-----ccchhhHhhcC
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYA--PWCG---HCKKLAPEYEKLGASFKKAKSVLIGKVDC-----DEHKSLCSKYG   93 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya--~~c~---~C~~~~~~~~~~~~~~~~~~~v~~~~vd~-----~~~~~l~~~~~   93 (358)
                      .+..||+.||++.+++++.+||.|||  |||+   +|+++.|.+.+.+.      .|.++.|||     .++.+||++|+
T Consensus         2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~   75 (116)
T cd03007           2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK   75 (116)
T ss_pred             CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence            46889999999999999999999999  8898   77777777766553      388999999     56789999999


Q ss_pred             cc--CCCeEEEccCCC-CCcccccCC-CCHHHHHHHHhcc
Q 018270           94 VQ--GYPTIQWFPKGS-LEPKKYEGP-RSTEALAEYVNNE  129 (358)
Q Consensus        94 i~--~~P~l~~~~~~~-~~~~~~~g~-~~~~~i~~~i~~~  129 (358)
                      |+  +|||+++|.+|. ..+..|+|. ++.++|.+|+.++
T Consensus        76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            99  999999999874 356899997 9999999999865

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.5e-20  Score=174.40  Aligned_cols=204  Identities=40%  Similarity=0.759  Sum_probs=163.6

Q ss_pred             CCC-eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           22 ADD-VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        22 ~~~-v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ... +..++..+|.+.+ ..+..++|.||+|||+||+.+.|.|++++..++....+.++.+||+....+|.+++|.++|+
T Consensus       142 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt  221 (383)
T KOG0191|consen  142 VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT  221 (383)
T ss_pred             cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence            344 8999999999877 66778999999999999999999999999999766789999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccC-----CCC-CceEc-CcccHHHHHhcCCCcEEEEEcCCCCc
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAA-----VPS-NVVVL-TADNFDEIVLDKSKDVLVEFYAPWCG  172 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~-----~~~-~v~~l-~~~~f~~~~~~~~~~v~v~f~a~~C~  172 (358)
                      +.+|.++......|.|.|+.+.+..|+....+....+..     .++ ....+ +.++|.... ......++.|+++||+
T Consensus       222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~  300 (383)
T KOG0191|consen  222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSL-EKKKNKFVKFYAPWCG  300 (383)
T ss_pred             EEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhh-HHhhhhHhhhhcchhh
Confidence            999998876347788999999999999988766421111     110 01111 111221111 3445789999999999


Q ss_pred             ccchhhhhHHHHHHH-hcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270          173 HCKNLAPTYEKVAAA-FTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  226 (358)
Q Consensus       173 ~c~~~~~~~~~la~~-~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~  226 (358)
                      +|....|.+...+.. +.....+.+.+++|.....+|.+..++++|++.++..+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (383)
T KOG0191|consen  301 HCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLYNYGK  355 (383)
T ss_pred             cccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeEeecccc
Confidence            999999999999988 223457889999999888899999999999999998764

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.84  E-value=4.3e-20  Score=155.82  Aligned_cols=206  Identities=25%  Similarity=0.467  Sum_probs=148.1

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC---CceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA---KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        28 l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      ++.+|+++++..+..++|.|||+||+.++.+.|.|+++++.++..   +.+.++.|||+++..++.+|.|+.|||+.+|.
T Consensus         1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            467889999988999999999999999999999999999887632   68999999999999999999999999999999


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEc-CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHH
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVL-TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEK  183 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l-~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~  183 (358)
                      +|.....+|.|.|+++.+.+||.......+.         +. +-..+......+.+.++..|-....+    ....+.+
T Consensus        81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~---------Ef~sl~~l~n~~~p~K~~vIgyF~~kdsp----ey~~~~k  147 (375)
T KOG0912|consen   81 NGEMMKREYRGQRSVEALIEFIEKQLSDPIN---------EFESLDQLQNLDIPSKRTVIGYFPSKDSP----EYDNLRK  147 (375)
T ss_pred             ccchhhhhhccchhHHHHHHHHHHHhccHHH---------HHHhHHHHHhhhccccceEEEEeccCCCc----hHHHHHH
Confidence            9986656999999999999999987654322         12 22334444422344555555433322    2346778


Q ss_pred             HHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcce-eeecCC-CCHHHHHHHHHHhcCCCC
Q 018270          184 VAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGG-RDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       184 la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~-~~~~g~-~~~~~l~~~i~~~~~~~~  253 (358)
                      +|..++.+-.+.++.-|..      ....-.+.| +++|+++...+ ..|.|. .+.+.+..||++.|-+-.
T Consensus       148 va~~lr~dc~f~V~~gD~~------~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLV  212 (375)
T KOG0912|consen  148 VASLLRDDCVFLVGFGDLL------KPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLV  212 (375)
T ss_pred             HHHHHhhccEEEeeccccc------cCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhh
Confidence            8888864433433332221      111122333 45666554433 368887 579999999999886543

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.84  E-value=1.8e-20  Score=140.68  Aligned_cols=100  Identities=24%  Similarity=0.459  Sum_probs=83.4

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcC--CCCc---ccchhhhhHHHHHHHhcCCCCeEEEEEeC-----cccHHHHHhc
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYA--PWCG---HCKNLAPTYEKVAAAFTLEDDVVVANLDA-----DKYKDLAEKY  211 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a--~~C~---~c~~~~~~~~~la~~~~~~~~v~~~~vd~-----~~~~~l~~~~  211 (358)
                      .++.|+..||++++ ...+.++|.|||  |||+   +|+.+.|.+.+.+      ..+.+++|||     .++.+||++|
T Consensus         2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa------~~v~lakVd~~d~~~~~~~~L~~~y   74 (116)
T cd03007           2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT------DDLLVAEVGIKDYGEKLNMELGERY   74 (116)
T ss_pred             CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc------CceEEEEEecccccchhhHHHHHHh
Confidence            36789999999998 788899999999  7777   5555555554443      3589999999     4678899999


Q ss_pred             CCC--cccEEEEEeCCC-cceeeecCC-CCHHHHHHHHHHh
Q 018270          212 GVS--GFPTLKFFPKGN-KDGEEYGGG-RDLEDFVSFINEK  248 (358)
Q Consensus       212 ~v~--~~Pti~~~~~g~-~~~~~~~g~-~~~~~l~~~i~~~  248 (358)
                      +|+  +|||+.+|.+|. ..+..|.|+ ++.++|++||+++
T Consensus        75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            999  999999999884 367899997 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.83  E-value=4.6e-20  Score=140.50  Aligned_cols=101  Identities=49%  Similarity=0.920  Sum_probs=91.7

Q ss_pred             eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEE
Q 018270           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        25 v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~  101 (358)
                      +.++++++|++.+ +.+++++|.||++||++|+++.|.|.++++.+.  +.+.++.+||+.  ++++|++|+|.++|+++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD--GLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc--CCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            6789999999988 567789999999999999999999999999987  568899999998  88999999999999999


Q ss_pred             EccCCC----CCcccccCCCCHHHHHHHHh
Q 018270          102 WFPKGS----LEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus       102 ~~~~~~----~~~~~~~g~~~~~~i~~~i~  127 (358)
                      +|.+++    ..+..|.|.++.+++.+||.
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHhC
Confidence            999886    34578999999999999973

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.83  E-value=4e-20  Score=140.81  Aligned_cols=101  Identities=50%  Similarity=0.872  Sum_probs=92.5

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCCcccEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti~  220 (358)
                      +.+++..+|++.+.+.+++++|.||++||++|+.+.|.|+++++.+.  +.+.++.+|++.  +.+++++|+|.++||++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD--GLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc--CCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            57899999999997788899999999999999999999999999985  468899999998  88999999999999999


Q ss_pred             EEeCCC----cceeeecCCCCHHHHHHHH
Q 018270          221 FFPKGN----KDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       221 ~~~~g~----~~~~~~~g~~~~~~l~~~i  245 (358)
                      +|++|+    .....|.|.++.++|.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHh
Confidence            999886    3567899999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.83  E-value=6e-20  Score=137.77  Aligned_cols=100  Identities=32%  Similarity=0.661  Sum_probs=89.1

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      .|.+++.++|++.+++ . ++|.|||+||++|+.+.|.|+++++.+++ ..+.++.+||++++.++++|+|.++||+++|
T Consensus         2 ~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02994           2 NVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYHA   78 (101)
T ss_pred             ceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence            5789999999998854 3 89999999999999999999999997653 3699999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhc
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      .+|. . ..|.|.++.++|.+|+++
T Consensus        79 ~~g~-~-~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          79 KDGV-F-RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             CCCC-E-EEecCCCCHHHHHHHHhC
Confidence            7764 3 789999999999999864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.83  E-value=5.8e-20  Score=137.87  Aligned_cols=100  Identities=36%  Similarity=0.660  Sum_probs=88.9

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      .+.+++.++|++++ . +. ++|.||++||++|+.+.|.|+++++.+. ..++.++.+|+++++.++++|+|.++||+++
T Consensus         2 ~v~~l~~~~f~~~~-~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~-~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~   77 (101)
T cd02994           2 NVVELTDSNWTLVL-E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSD-DLGINVAKVDVTQEPGLSGRFFVTALPTIYH   77 (101)
T ss_pred             ceEEcChhhHHHHh-C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhc-cCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence            47889999999987 3 33 7899999999999999999999999764 3469999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      |++|.  ...|.|.++.++|.+||++
T Consensus        78 ~~~g~--~~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          78 AKDGV--FRRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             eCCCC--EEEecCCCCHHHHHHHHhC
Confidence            98874  4789999999999999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.83  E-value=5.4e-20  Score=139.76  Aligned_cols=103  Identities=30%  Similarity=0.701  Sum_probs=91.3

Q ss_pred             CceEcCcccHHHHHh--cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cHHHHH-hcCCCccc
Q 018270          142 NVVVLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAE-KYGVSGFP  217 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~--~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~l~~-~~~v~~~P  217 (358)
                      .|.+++..+|+.++.  +.+++++|.||++||++|+++.|.|.++++.++ ..++.++.||++. +..++. .|+|.++|
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~-~~~~~~~~vd~d~~~~~~~~~~~~v~~~P   80 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLA-GSNVKVAKFNADGEQREFAKEELQLKSFP   80 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc-cCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence            478899999999884  357899999999999999999999999999997 3469999999997 577886 49999999


Q ss_pred             EEEEEeCCCcceeeecCC-CCHHHHHHHH
Q 018270          218 TLKFFPKGNKDGEEYGGG-RDLEDFVSFI  245 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~-~~~~~l~~~i  245 (358)
                      |+++|++|+..+..|.|. ++.++|++||
T Consensus        81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            999999987788999995 8999999985

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.82  E-value=1.3e-19  Score=137.75  Aligned_cols=102  Identities=30%  Similarity=0.668  Sum_probs=90.5

Q ss_pred             CeEEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-chhhHh-hcCccCCC
Q 018270           24 DVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-HKSLCS-KYGVQGYP   98 (358)
Q Consensus        24 ~v~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~-~~~i~~~P   98 (358)
                      .|.+++.++|+.++   +.+++++|.||++||++|+++.|.|.++++.+++ ..+.++.|||+. +..+|. .++|+++|
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P   80 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP   80 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence            57899999999987   3578999999999999999999999999999973 359999999997 578886 49999999


Q ss_pred             eEEEccCCCCCcccccCC-CCHHHHHHHH
Q 018270           99 TIQWFPKGSLEPKKYEGP-RSTEALAEYV  126 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g~-~~~~~i~~~i  126 (358)
                      |+++|.+++..+..|.|. ++.++|..||
T Consensus        81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            999999887677899995 8999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=3.7e-20  Score=142.36  Aligned_cols=105  Identities=30%  Similarity=0.539  Sum_probs=96.0

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..+..++..+|++.+ +++.||+|.|||+||+||+.+.|.+++++..+.  +.+.++++|.+++.+++.+|+|..+||++
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvl  120 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVL  120 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEE
Confidence            356777889998877 889999999999999999999999999999997  78999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +|++|... .++.|..+.+.+.++|....
T Consensus       121 vfknGe~~-d~~vG~~~~~~l~~~i~k~l  148 (150)
T KOG0910|consen  121 VFKNGEKV-DRFVGAVPKEQLRSLIKKFL  148 (150)
T ss_pred             EEECCEEe-eeecccCCHHHHHHHHHHHh
Confidence            99988755 78899999999999998754

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.82  E-value=1.6e-19  Score=136.02  Aligned_cols=101  Identities=50%  Similarity=0.933  Sum_probs=92.0

Q ss_pred             CeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ++.++++++|.+.+ +.+++++|.||++||++|+.+.|.|.++++.+.  +.+.++.+||+++.+++++|+|.++|++++
T Consensus         1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~~~~~~i~~~P~~~~   78 (103)
T cd03001           1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK--GIVKVGAVDADVHQSLAQQYGVRGFPTIKV   78 (103)
T ss_pred             CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence            36789999999988 455669999999999999999999999999987  569999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHH
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      |.+|......|.|.++.+++.+|+
T Consensus        79 ~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          79 FGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             ECCCCcceeecCCCCCHHHHHHHh
Confidence            998865668999999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.82  E-value=1.5e-19  Score=136.16  Aligned_cols=101  Identities=51%  Similarity=0.883  Sum_probs=93.3

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      +.++++.+|++.+.+.+.+++|.||++||++|+.+.|.|.++++.+.  +.+.++.+|++++.+++++|+|+++|++++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~   79 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK--GIVKVGAVDADVHQSLAQQYGVRGFPTIKVF   79 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence            57889999999987777789999999999999999999999999885  4699999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHH
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      ++|......|.|+++.++|.+|+
T Consensus        80 ~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          80 GAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCCCcceeecCCCCCHHHHHHHh
Confidence            98866788999999999999996

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.81  E-value=1.6e-19  Score=135.72  Aligned_cols=100  Identities=48%  Similarity=1.023  Sum_probs=89.9

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhc-CCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK-AKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      +..++.++|++.+..+ +++|.||++||++|+.+.|.|.++++.+++ ...+.++.+||+++..+|++|+|.++|++++|
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   80 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF   80 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence            6789999999999655 599999999999999999999999999975 24799999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHH
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      .+|. ...+|.|.++.+++.+||
T Consensus        81 ~~g~-~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          81 KDGE-KVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             eCCC-eeeEeeCCCCHHHHHhhC
Confidence            8776 447899999999998875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.81  E-value=1e-19  Score=138.47  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=91.8

Q ss_pred             cCCCeEEcChhhHHHHhcC-CCcEEEEEECCCChh--hh--hhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc
Q 018270           21 LADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGH--CK--KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ   95 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~-~~~~lv~fya~~c~~--C~--~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~   95 (358)
                      +...+..+|++||++.+.+ +.++++.||+.||++  |+  .+.|.+.++++++-..+.+.|++||+++++++|++|+|.
T Consensus         7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~   86 (120)
T cd03065           7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD   86 (120)
T ss_pred             CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence            3467899999999998854 557888888888876  99  888999999888722267999999999999999999999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++||+++|++|..  ..|.|.++.+.+.+||.+.
T Consensus        87 ~iPTl~lfk~G~~--v~~~G~~~~~~l~~~l~~~  118 (120)
T cd03065          87 EEDSIYVFKDDEV--IEYDGEFAADTLVEFLLDL  118 (120)
T ss_pred             cccEEEEEECCEE--EEeeCCCCHHHHHHHHHHH
Confidence            9999999998863  3499999999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.81  E-value=2e-19  Score=135.96  Aligned_cols=103  Identities=72%  Similarity=1.224  Sum_probs=94.4

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cHHHHHhcCCCcccEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~l~~~~~v~~~Pti~~  221 (358)
                      +.++++.+|++.+.+.+++++|.||++||++|+++.|.|.++++.+...+++.++.+|++. +.+++++|+|.++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            5678999999988666779999999999999999999999999999755689999999999 899999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHH
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      |.+|+.....|.|.++.++|.+||
T Consensus        82 ~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCCccccCCccCHHHHHhhC
Confidence            998877788899999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.81  E-value=2e-19  Score=135.75  Aligned_cols=102  Identities=54%  Similarity=1.029  Sum_probs=92.6

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      |.++++.+|++.+.+.+++++|.||++||++|+.+.|.|.++++.+....++.++.+|++.+ +++..+++.++||+++|
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~   80 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF   80 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence            67899999999987777999999999999999999999999999997656899999999987 58889999999999999


Q ss_pred             eCCC-cceeeecCCCCHHHHHHHH
Q 018270          223 PKGN-KDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       223 ~~g~-~~~~~~~g~~~~~~l~~~i  245 (358)
                      ++|+ .....|.|..+.++|.+||
T Consensus        81 ~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          81 PAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             cCCCcCCceEccCCcCHHHHHhhC
Confidence            9887 3678899999999999985

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.81  E-value=1.4e-18  Score=146.78  Aligned_cols=110  Identities=35%  Similarity=0.714  Sum_probs=96.1

Q ss_pred             CCCceEcCcccHHHHHhcC----CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc
Q 018270          140 PSNVVVLTADNFDEIVLDK----SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG  215 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~----~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~  215 (358)
                      ++.+.++++.+|++.+...    +++++|.||+|||++|+.+.|.|+++++.++  +.+.++.+|++.+++++++|+|.+
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~--~~v~~~~VD~~~~~~l~~~~~I~~  106 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK--GQVNVADLDATRALNLAKRFAIKG  106 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEecCcccHHHHHHcCCCc
Confidence            5679999999999988543    5799999999999999999999999999986  468999999999999999999999


Q ss_pred             ccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          216 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +||+++|++|. ....+.|.++.++|.+|+.+.....
T Consensus       107 ~PTl~~f~~G~-~v~~~~G~~s~e~L~~fi~~~~~~~  142 (224)
T PTZ00443        107 YPTLLLFDKGK-MYQYEGGDRSTEKLAAFALGDFKKA  142 (224)
T ss_pred             CCEEEEEECCE-EEEeeCCCCCHHHHHHHHHHHHHhh
Confidence            99999999873 3344567899999999999887533

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.81  E-value=3e-19  Score=134.18  Aligned_cols=101  Identities=52%  Similarity=1.016  Sum_probs=93.6

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        28 l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      |++++|++.+.++++++|.||++||++|+.+.|.|+++++.+++.+.+.++.+||++++.++++|+|.++|++++|.+++
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~   80 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK   80 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence            57889999999999999999999999999999999999999975447999999999999999999999999999999887


Q ss_pred             CCcccccCCCCHHHHHHHHhcc
Q 018270          108 LEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       108 ~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      . +..|.|.++.+++..||.+.
T Consensus        81 ~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        81 K-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             c-ceeecCCCCHHHHHHHHHhc
Confidence            6 68999999999999999864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.80  E-value=2.8e-19  Score=134.41  Aligned_cols=100  Identities=41%  Similarity=0.872  Sum_probs=89.4

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC-CCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~-~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      +.++++++|+..+. .+ .++|.||++||++|+.+.|.|.++++.+.. ...+.++.+|++.+..++++|+|.++||+++
T Consensus         2 ~~~l~~~~f~~~~~-~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           2 VLELTEDNFDHHIA-EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL   79 (102)
T ss_pred             eeECCHHHHHHHhh-cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence            56789999999983 33 599999999999999999999999999975 3479999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHH
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      |++|. ...+|.|.++.++|.+||
T Consensus        80 ~~~g~-~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          80 FKDGE-KVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EeCCC-eeeEeeCCCCHHHHHhhC
Confidence            98775 667899999999998885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.9e-19  Score=152.10  Aligned_cols=108  Identities=35%  Similarity=0.713  Sum_probs=99.5

Q ss_pred             CCCeEEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           22 ADDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      ...|.++|+.||.+.+   +..+||+|+||+|||++|+++.|.+++++..++  +.+.+++|||++++.++.+|||+++|
T Consensus        22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~vAaqfgiqsIP   99 (304)
T COG3118          22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPMVAAQFGVQSIP   99 (304)
T ss_pred             cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchhHHHHhCcCcCC
Confidence            3459999999999987   555699999999999999999999999999998  77999999999999999999999999


Q ss_pred             eEEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270           99 TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +++.|.+|... ..|.|....+.+.+|+....+.
T Consensus       100 tV~af~dGqpV-dgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         100 TVYAFKDGQPV-DGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             eEEEeeCCcCc-cccCCCCcHHHHHHHHHHhcCh
Confidence            99999999865 8899999999999999987654

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.80  E-value=4.5e-19  Score=133.24  Aligned_cols=101  Identities=66%  Similarity=1.157  Sum_probs=93.0

Q ss_pred             cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270          146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g  225 (358)
                      |++++|++.+ ..+++++|.||++||++|+.+.|.|++++..+...+++.++.+|++.+..++++|+|.++|++++|++|
T Consensus         1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            5678999988 488999999999999999999999999999997655799999999999999999999999999999998


Q ss_pred             CcceeeecCCCCHHHHHHHHHHh
Q 018270          226 NKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       226 ~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +. +..|.|..+.++|..||.++
T Consensus        80 ~~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        80 KK-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             Cc-ceeecCCCCHHHHHHHHHhc
Confidence            75 88999999999999999864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.5e-18  Score=147.75  Aligned_cols=108  Identities=31%  Similarity=0.636  Sum_probs=98.3

Q ss_pred             CCceEcCcccHHHHHhc--CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          141 SNVVVLTADNFDEIVLD--KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~--~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ..++++|..||++.+..  ...||+|+||+|||+||+++.|.+++++..++  +.+.+++||||.++.++.+|||+++||
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~vAaqfgiqsIPt  100 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPMVAAQFGVQSIPT  100 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchhHHHHhCcCcCCe
Confidence            34899999999998853  34599999999999999999999999999996  789999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      ++.|.+|. .+.-|.|....+.+..|+.++.+.
T Consensus       101 V~af~dGq-pVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         101 VYAFKDGQ-PVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EEEeeCCc-CccccCCCCcHHHHHHHHHHhcCh
Confidence            99999995 456789999999999999998876

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.80  E-value=3.8e-19  Score=132.49  Aligned_cols=89  Identities=28%  Similarity=0.543  Sum_probs=79.3

Q ss_pred             HHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-cchhhHhhcCccCCCeEEEccCCCCC
Q 018270           33 FEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        33 f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P~l~~~~~~~~~  109 (358)
                      +.+++  .++++++|.|||+||++|+.+.|.|+++++.++   .+.++.||++ +.+.++++|+|.++||+++|++|  .
T Consensus         9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~   83 (100)
T cd02999           9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--P   83 (100)
T ss_pred             HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--c
Confidence            44444  578999999999999999999999999999985   4778899998 78999999999999999999887  4


Q ss_pred             cccccCCCCHHHHHHHH
Q 018270          110 PKKYEGPRSTEALAEYV  126 (358)
Q Consensus       110 ~~~~~g~~~~~~i~~~i  126 (358)
                      ..+|.|.++.+++.+|+
T Consensus        84 ~~~~~G~~~~~~l~~f~  100 (100)
T cd02999          84 RVRYNGTRTLDSLAAFY  100 (100)
T ss_pred             eeEecCCCCHHHHHhhC
Confidence            58999999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.80  E-value=7.4e-19  Score=132.82  Aligned_cols=102  Identities=62%  Similarity=1.127  Sum_probs=92.4

Q ss_pred             eEEcChhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-chhhHhhcCccCCCeEEE
Q 018270           25 VVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-HKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        25 v~~l~~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~P~l~~  102 (358)
                      +.++++++|++.+. .+++++|.||++||++|+++.|.|.++++.++..+.+.++.+||++ ++++|++|+|.++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            57889999999885 4559999999999999999999999999998754679999999999 999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHH
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      |.+++.....|.|.++.+++.+|+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCCccccCCccCHHHHHhhC
Confidence            998866668899999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.80  E-value=6.3e-19  Score=132.96  Aligned_cols=102  Identities=42%  Similarity=0.903  Sum_probs=92.2

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEE
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~  101 (358)
                      ++..+++.+|++.++++++++|.||++||++|+.+.|.+.++++.+...+.+.++.+||+.  +..++++++|.++|+++
T Consensus         1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            3678899999999988899999999999999999999999999988754568999999998  89999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHH
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      +|++|. ....|.|..+.+++.+|+
T Consensus        81 ~~~~g~-~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGK-FVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCC-eeEEeCCCCCHHHHHhhC
Confidence            998775 457899999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.79  E-value=4e-19  Score=132.33  Aligned_cols=84  Identities=26%  Similarity=0.616  Sum_probs=77.7

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-ccHHHHHhcCCCcccEEEEEeCCCcceeeecCC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG  235 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~  235 (358)
                      .++++++|.|||+||++|+.+.|.|+++++.+.   ++.++.+|.+ .+++++++|+|.++||+++|++|  ...+|.|.
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~   90 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGT   90 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCC
Confidence            578999999999999999999999999999984   4788999998 78999999999999999999987  67899999


Q ss_pred             CCHHHHHHHH
Q 018270          236 RDLEDFVSFI  245 (358)
Q Consensus       236 ~~~~~l~~~i  245 (358)
                      ++.+.|.+||
T Consensus        91 ~~~~~l~~f~  100 (100)
T cd02999          91 RTLDSLAAFY  100 (100)
T ss_pred             CCHHHHHhhC
Confidence            9999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.79  E-value=8.4e-19  Score=132.27  Aligned_cols=101  Identities=47%  Similarity=0.914  Sum_probs=90.2

Q ss_pred             eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        25 v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      |..++.++|++.+ +.+++++|.||++||++|+.+.|.|.++++.+++...+.++.+||+++ +++..+++.++|++++|
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~   80 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF   80 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence            6789999999988 445899999999999999999999999999997545799999999987 58889999999999999


Q ss_pred             cCCC-CCcccccCCCCHHHHHHHH
Q 018270          104 PKGS-LEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus       104 ~~~~-~~~~~~~g~~~~~~i~~~i  126 (358)
                      .+|+ .....|.|.++.+++.+||
T Consensus        81 ~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          81 PAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             cCCCcCCceEccCCcCHHHHHhhC
Confidence            8887 4457899999999999886

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.79  E-value=5.1e-19  Score=134.68  Aligned_cols=101  Identities=19%  Similarity=0.379  Sum_probs=88.7

Q ss_pred             EEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           26 VVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        26 ~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ..++.++|.+.+   ..+++++|.||++||++|+.+.|.|+++++.+++ ..+.++.|||++++.++++++|.++||+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i   85 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVG   85 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence            456788897654   3689999999999999999999999999999974 258999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhc
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      |++|. ....+.|..+.+.+.+||++
T Consensus        86 ~~~g~-~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          86 IINGQ-VTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             EECCE-EEEEecCCCCHHHHHHHHhc
Confidence            98764 44677899999999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.79  E-value=1.5e-18  Score=132.00  Aligned_cols=107  Identities=33%  Similarity=0.661  Sum_probs=95.8

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      .+.++++++.+|.+.+.+.+++++|.||++||++|+.+.|.++++++.+.  +++.++.+|++.++.++++|+|.++||+
T Consensus         2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL   79 (109)
T ss_pred             CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC--CCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence            45688899999998776778999999999999999999999999999985  4689999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++|++| +....+.|..+.+++.+||.+++
T Consensus        80 ~~~~~G-~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         80 LLFKNG-EVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence            999877 45667889999999999998754

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.79  E-value=9e-19  Score=133.32  Aligned_cols=100  Identities=20%  Similarity=0.370  Sum_probs=87.4

Q ss_pred             cCcccHHHHHh--cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEe
Q 018270          146 LTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  223 (358)
Q Consensus       146 l~~~~f~~~~~--~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~  223 (358)
                      ++..+|++.+.  +.+++++|.||+|||++|+.+.|.|.++++.+.+ .++.++.||++.++.++++++|.++||+++|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~   87 (111)
T cd02963           9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVGII   87 (111)
T ss_pred             eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence            56677876553  3678999999999999999999999999999963 36899999999999999999999999999998


Q ss_pred             CCCcceeeecCCCCHHHHHHHHHH
Q 018270          224 KGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       224 ~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      +| +....+.|..+.+.|.+||++
T Consensus        88 ~g-~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          88 NG-QVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             CC-EEEEEecCCCCHHHHHHHHhc
Confidence            77 456677899999999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.78  E-value=1.3e-18  Score=129.26  Aligned_cols=93  Identities=27%  Similarity=0.606  Sum_probs=82.6

Q ss_pred             hHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270           32 NFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        32 ~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~  109 (358)
                      +|++.+  +++++++|+||++||++|+.+.|.+.+++..+.  +.+.++.+|++++++++++|+|.++|++++|.+|. .
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~   78 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ--GQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-P   78 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-E
Confidence            577777  336799999999999999999999999999987  46899999999999999999999999999998654 4


Q ss_pred             cccccCCCCHHHHHHHHh
Q 018270          110 PKKYEGPRSTEALAEYVN  127 (358)
Q Consensus       110 ~~~~~g~~~~~~i~~~i~  127 (358)
                      ...+.|..+.+++.+|+.
T Consensus        79 ~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          79 VDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             eeeecCCCCHHHHHHHhC
Confidence            468999999999999874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.78  E-value=1.8e-18  Score=131.58  Aligned_cols=106  Identities=30%  Similarity=0.680  Sum_probs=94.3

Q ss_pred             CCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      .+.+.+++.++|.+.+ +.+++++|+||++||++|+.+.|.|+++++.+.  +.+.++.+|++..+.++++|+|.++|++
T Consensus         2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL   79 (109)
T ss_pred             CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC--CCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence            4678899999999755 668899999999999999999999999999987  4699999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ++|.+|. ...++.|..+.+.+..+++..+
T Consensus        80 ~~~~~G~-~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         80 LLFKNGE-VAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEeCCe-EEEEecCCCCHHHHHHHHHHhc
Confidence            9997765 4467889999999999998653

>PHA02278 thioredoxin-like protein

Probab=99.78  E-value=1.1e-18  Score=129.80  Aligned_cols=94  Identities=19%  Similarity=0.290  Sum_probs=81.9

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----hhhHhhcCccCCCeEEEcc
Q 018270           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~P~l~~~~  104 (358)
                      +.++|.+.++++++++|+|||+||++|+.+.|.++++++.+.  ..+.++.+|++++    .+++++|+|.++||+++|+
T Consensus         3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk   80 (103)
T PHA02278          3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGD--IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK   80 (103)
T ss_pred             CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence            357888999889999999999999999999999999998754  4467899999976    6899999999999999999


Q ss_pred             CCCCCcccccCCCCHHHHHHH
Q 018270          105 KGSLEPKKYEGPRSTEALAEY  125 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~  125 (358)
                      +|... .+..|..+.+.+.++
T Consensus        81 ~G~~v-~~~~G~~~~~~l~~~  100 (103)
T PHA02278         81 DGQLV-KKYEDQVTPMQLQEL  100 (103)
T ss_pred             CCEEE-EEEeCCCCHHHHHhh
Confidence            87644 788898888888775

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.78  E-value=2.1e-18  Score=130.09  Aligned_cols=101  Identities=45%  Similarity=0.863  Sum_probs=90.7

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCCcccEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti~  220 (358)
                      +..+++.+|+..+ ..+++++|.||++||++|+.+.|.+.++++.+...+.+.++.+|++.  +..++++|+|.++||++
T Consensus         2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            5678899999988 56679999999999999999999999999998755678999999998  89999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHH
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      +|++|. ....|.|..+.+.+.+||
T Consensus        81 ~~~~g~-~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGK-FVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCC-eeEEeCCCCCHHHHHhhC
Confidence            999874 577899999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.78  E-value=3e-18  Score=127.28  Aligned_cols=94  Identities=26%  Similarity=0.573  Sum_probs=83.7

Q ss_pred             ccHHHHHhcC-CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc
Q 018270          149 DNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  227 (358)
Q Consensus       149 ~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~  227 (358)
                      ++|++.+.+. +++++|.||++||++|+.+.|.+.+++..+.  +.+.++.+|++.+..++++|+|.++||+++|++| +
T Consensus         1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~   77 (96)
T cd02956           1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ--GQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG-Q   77 (96)
T ss_pred             CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC-E
Confidence            3677777544 6899999999999999999999999999985  4689999999999999999999999999999866 4


Q ss_pred             ceeeecCCCCHHHHHHHH
Q 018270          228 DGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       228 ~~~~~~g~~~~~~l~~~i  245 (358)
                      ....+.|..+.++|..||
T Consensus        78 ~~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          78 PVDGFQGAQPEEQLRQML   95 (96)
T ss_pred             EeeeecCCCCHHHHHHHh
Confidence            566799999999999987

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PHA02278 thioredoxin-like protein

Probab=99.77  E-value=2.5e-18  Score=127.90  Aligned_cols=93  Identities=15%  Similarity=0.233  Sum_probs=80.0

Q ss_pred             cccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcCCCcccEEEEEe
Q 018270          148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFP  223 (358)
Q Consensus       148 ~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~v~~~Pti~~~~  223 (358)
                      ..+|.+.+ ..+++++|.|||+||+||+.+.|.++++++.+.  .++.++.+|++.+    ++++++|+|.++||+++|+
T Consensus         4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk   80 (103)
T PHA02278          4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD--IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK   80 (103)
T ss_pred             HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence            46788877 678999999999999999999999999998753  3466888888865    6899999999999999999


Q ss_pred             CCCcceeeecCCCCHHHHHHH
Q 018270          224 KGNKDGEEYGGGRDLEDFVSF  244 (358)
Q Consensus       224 ~g~~~~~~~~g~~~~~~l~~~  244 (358)
                      +| +...+..|..+.+.+.++
T Consensus        81 ~G-~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         81 DG-QLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             CC-EEEEEEeCCCCHHHHHhh
Confidence            88 466788898888888776

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.77  E-value=1.4e-18  Score=129.98  Aligned_cols=85  Identities=22%  Similarity=0.344  Sum_probs=72.8

Q ss_pred             cccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270          148 ADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  226 (358)
Q Consensus       148 ~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~  226 (358)
                      .++|++.+.. .+++++|.|||+||+||+.+.|.+++++..+.  +.+.|++||++++++++++|+|.++||+++|++|.
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~--~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS--NFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence            4567777743 57899999999999999999999999999985  45789999999999999999999999999999885


Q ss_pred             cceeeecCC
Q 018270          227 KDGEEYGGG  235 (358)
Q Consensus       227 ~~~~~~~g~  235 (358)
                       ......|.
T Consensus        80 -~v~~~~G~   87 (114)
T cd02954          80 -HMKIDLGT   87 (114)
T ss_pred             -EEEEEcCC
Confidence             44455553

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.77  E-value=3.5e-18  Score=127.84  Aligned_cols=100  Identities=59%  Similarity=1.151  Sum_probs=91.1

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        27 ~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      +++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.++..+.+.++.+||+++..++++|+|.++|++++|.++
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence            57889999999888899999999999999999999999999984336799999999999999999999999999999988


Q ss_pred             CCCcccccCCCCHHHHHHHH
Q 018270          107 SLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus       107 ~~~~~~~~g~~~~~~i~~~i  126 (358)
                      +....+|.|..+.+++.+|+
T Consensus        82 ~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          82 SKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CcccccCCCCcCHHHHHhhC
Confidence            55668999999999998875

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK10996 thioredoxin 2; Provisional

Probab=99.77  E-value=3.1e-18  Score=135.54  Aligned_cols=105  Identities=25%  Similarity=0.578  Sum_probs=95.1

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ...+.+++.++|++.++++++++|+||++||++|+.+.|.|.++++.+.  +.+.++.+|++++++++++|+|.++|+++
T Consensus        34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~V~~~Ptli  111 (139)
T PRK10996         34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS--GKVRFVKVNTEAERELSARFRIRSIPTIM  111 (139)
T ss_pred             CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence            4457789999999999889999999999999999999999999999886  56999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +|++|. ....+.|..+.+.+.+|+++.
T Consensus       112 i~~~G~-~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        112 IFKNGQ-VVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEECCE-EEEEEcCCCCHHHHHHHHHHh
Confidence            998665 447889999999999999864

>PTZ00062 glutaredoxin; Provisional

Probab=99.76  E-value=1.6e-17  Score=138.12  Aligned_cols=161  Identities=13%  Similarity=0.198  Sum_probs=115.7

Q ss_pred             ChhhHHHHhcCC-CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           29 TEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        29 ~~~~f~~~~~~~-~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      +.++|.+.++++ ..++++|+|+||++|+.+.|.+.++++.+   +.+.|+.||.+        |+|.++|++++|++|.
T Consensus         5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~---~~~~F~~V~~d--------~~V~~vPtfv~~~~g~   73 (204)
T PTZ00062          5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF---PSLEFYVVNLA--------DANNEYGVFEFYQNSQ   73 (204)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC---CCcEEEEEccc--------cCcccceEEEEEECCE
Confidence            467888888654 77899999999999999999999999998   56999999977        9999999999999887


Q ss_pred             CCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEE----cCCCCcccchhhhhHHH
Q 018270          108 LEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEF----YAPWCGHCKNLAPTYEK  183 (358)
Q Consensus       108 ~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f----~a~~C~~c~~~~~~~~~  183 (358)
                      .. .++.|. ++..+..++....+.....         ....-.++++  .+.+|+|.-    +.|||++|++....+.+
T Consensus        74 ~i-~r~~G~-~~~~~~~~~~~~~~~~~~~---------~~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~  140 (204)
T PTZ00062         74 LI-NSLEGC-NTSTLVSFIRGWAQKGSSE---------DTVEKIERLI--RNHKILLFMKGSKTFPFCRFSNAVVNMLNS  140 (204)
T ss_pred             EE-eeeeCC-CHHHHHHHHHHHcCCCCHH---------HHHHHHHHHH--hcCCEEEEEccCCCCCCChhHHHHHHHHHH
Confidence            44 677764 5899999998776532210         1123344444  334444433    34799999998877775


Q ss_pred             HHHHhcCCCCeEEEEEeCcccHH----HHHhcCCCcccEEEE
Q 018270          184 VAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLKF  221 (358)
Q Consensus       184 la~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pti~~  221 (358)
                      .        ++.+..+|++++++    +.+..|...+|.+++
T Consensus       141 ~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI  174 (204)
T PTZ00062        141 S--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV  174 (204)
T ss_pred             c--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence            4        24455666665543    333446667887553

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=6.8e-17  Score=148.13  Aligned_cols=300  Identities=21%  Similarity=0.416  Sum_probs=174.9

Q ss_pred             CCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCc--cchhhHhhcCccCC
Q 018270           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCD--EHKSLCSKYGVQGY   97 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~--~~~~l~~~~~i~~~   97 (358)
                      .+.|..|+.++|...+ .+.+..+|+||++|||||+.++|+|.++++.+..= +-+.++.|||-  ++..+|++|+|.+|
T Consensus        38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~  117 (606)
T KOG1731|consen   38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY  117 (606)
T ss_pred             CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence            4679999999999999 44458999999999999999999999999887632 46889999996  56889999999999


Q ss_pred             CeEEEccCCCCC---cccccCCCCHHHHHHHHhccC------CCCccccCCCCCceEcCcccHHHHH---hcCCCcEEEE
Q 018270           98 PTIQWFPKGSLE---PKKYEGPRSTEALAEYVNNEG------GTNVKIAAVPSNVVVLTADNFDEIV---LDKSKDVLVE  165 (358)
Q Consensus        98 P~l~~~~~~~~~---~~~~~g~~~~~~i~~~i~~~~------~~~~~~~~~~~~v~~l~~~~f~~~~---~~~~~~v~v~  165 (358)
                      |++++|.++...   ...+.|.....++.+.+....      +..+.   .|..-...+..+..++.   .+....+.+.
T Consensus       118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~---WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv  194 (606)
T KOG1731|consen  118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPS---WPNFDPLKDTTTLEELDEGISTTANYVAIV  194 (606)
T ss_pred             ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCC---CCCCCCCCCcchHHHHhcccccccceeEEE
Confidence            999999876432   234556555666666554311      11111   11111111122222222   1233456666


Q ss_pred             Ec-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHH
Q 018270          166 FY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF  244 (358)
Q Consensus       166 f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~  244 (358)
                      |- .+.       .-.+..+-.... .+++.+..+-.++.-.+.+ ++++..|+..+|++|...+. +....+.+...+.
T Consensus       195 ~e~~~s-------~lg~~~~l~~l~-~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l-~~~~~s~~~y~~~  264 (606)
T KOG1731|consen  195 FETEPS-------DLGWANLLNDLP-SKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPL-WPSSSSRSAYVKK  264 (606)
T ss_pred             EecCCc-------ccHHHHHHhhcc-CCCcceEEEecchhccccc-cCCCCchhhhhhcCCccccc-ccccccHHHHHHH
Confidence            63 221       123333333332 2345454444444444555 88999999999999965443 3444556688888


Q ss_pred             HHHhcCCCCCCCCCcccccc---chhhHHHH---HH-H-HHhcc--hhh-HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Q 018270          245 INEKCGTSRDGKGQLTSTAG---IVASLDAL---VK-E-FVAAS--GDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVA  313 (358)
Q Consensus       245 i~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~-~-f~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  313 (358)
                      |.+.+|......+.......   .-+.+|..   +. . |+...  .+. +-.+..++-.. ..+.+......+.+++++
T Consensus       265 I~~~lg~~~~a~~pt~~p~~~~~~~~~Id~~~~~l~~~~~V~~aDLeqAm~~~L~~Ev~R~-~~i~g~~l~aLk~f~~ll  343 (606)
T KOG1731|consen  265 IDDLLGDKNEASGPTLHPITATTAAPTIDAPSEVLNNQYFVYEADLEQAMSYILHIEVPRT-ALIRGENLAALKEFMHLL  343 (606)
T ss_pred             HHHHhcCccccCCCCcCcccccccchhhhcchhhcCccceehHhhHHHHHHHHHHHhhcch-hhccCchHHHHHHHHHHH
Confidence            88888776554432111111   11122221   10 0 11111  111 11222222222 334555556677888888


Q ss_pred             HHHhhcCCchHHHHHHHHHHHHh
Q 018270          314 KNYMDKGSDYAKKEIDRLQRMLD  336 (358)
Q Consensus       314 ~k~~~~~~~~~~~e~~rl~~~l~  336 (358)
                      .+. -.|.....+=..+|++-+.
T Consensus       344 ~r~-~P~~~~~~~l~~~Ld~~~~  365 (606)
T KOG1731|consen  344 RRY-FPGTADGRRLVNSLDNSLS  365 (606)
T ss_pred             HHh-CCCChhHHHHHHHHhhhhh
Confidence            887 4455555555555555544

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.76  E-value=1.8e-18  Score=129.45  Aligned_cols=86  Identities=17%  Similarity=0.266  Sum_probs=74.6

Q ss_pred             hhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           30 EDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        30 ~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      .++|++.+.  .+++++|.|||+||++|+.+.|.+++++++++  +.+.|++||++++++++.+|+|.++||+++|++|.
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~--~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS--NFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence            467888884  57899999999999999999999999999986  55899999999999999999999999999999886


Q ss_pred             CCcccccCCCC
Q 018270          108 LEPKKYEGPRS  118 (358)
Q Consensus       108 ~~~~~~~g~~~  118 (358)
                      .. ....|..+
T Consensus        80 ~v-~~~~G~~~   89 (114)
T cd02954          80 HM-KIDLGTGN   89 (114)
T ss_pred             EE-EEEcCCCC
Confidence            44 55555443

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.76  E-value=6e-18  Score=134.52  Aligned_cols=92  Identities=24%  Similarity=0.492  Sum_probs=80.3

Q ss_pred             CCCeEEcChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC---
Q 018270           22 ADDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG---   96 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~---   96 (358)
                      ...+.+++.++|++.+.  .+++++|+||++||++|+.+.|.|+++++.+++ .++.++.||++++++++++|+|.+   
T Consensus        27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~  105 (152)
T cd02962          27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPL  105 (152)
T ss_pred             CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCC
Confidence            45789999999999883  457899999999999999999999999999863 359999999999999999999988   


Q ss_pred             ---CCeEEEccCCCCCcccccC
Q 018270           97 ---YPTIQWFPKGSLEPKKYEG  115 (358)
Q Consensus        97 ---~P~l~~~~~~~~~~~~~~g  115 (358)
                         +||+++|++|... .++.|
T Consensus       106 v~~~PT~ilf~~Gk~v-~r~~G  126 (152)
T cd02962         106 SKQLPTIILFQGGKEV-ARRPY  126 (152)
T ss_pred             cCCCCEEEEEECCEEE-EEEec
Confidence               9999999877643 56655

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PRK10996 thioredoxin 2; Provisional

Probab=99.75  E-value=1.3e-17  Score=132.08  Aligned_cols=105  Identities=28%  Similarity=0.644  Sum_probs=94.1

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      ...+..++..+|+..+ +.+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++++++++++|+|.++||+
T Consensus        34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~V~~~Ptl  110 (139)
T PRK10996         34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS--GKVRFVKVNTEAERELSARFRIRSIPTI  110 (139)
T ss_pred             CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence            4457778999999987 678999999999999999999999999999875  4699999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++|++| +....+.|..+.+.|.+|+++.
T Consensus       111 ii~~~G-~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        111 MIFKNG-QVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEEECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence            999876 4567789999999999999864

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.75  E-value=8.1e-18  Score=126.74  Aligned_cols=96  Identities=41%  Similarity=0.812  Sum_probs=84.5

Q ss_pred             ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc
Q 018270          149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  227 (358)
Q Consensus       149 ~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~  227 (358)
                      ++|++..  .++.++|.||++||++|+.+.|.|+++++.++.. .++.++.+|++..++++++|+|.++||+++|.+|  
T Consensus         7 ~~~~~~~--~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~--   82 (104)
T cd03000           7 DSFKDVR--KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD--   82 (104)
T ss_pred             hhhhhhc--cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--
Confidence            6777743  5779999999999999999999999999998643 3599999999999999999999999999999755  


Q ss_pred             ceeeecCCCCHHHHHHHHHHh
Q 018270          228 DGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       228 ~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ....|.|.++.++|.+|+++.
T Consensus        83 ~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          83 LAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             CceeecCCCCHHHHHHHHHhh
Confidence            457799999999999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.75  E-value=1.1e-17  Score=125.48  Aligned_cols=95  Identities=21%  Similarity=0.375  Sum_probs=78.9

Q ss_pred             CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH---HHHHhcCCCcccEEEEE
Q 018270          147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       147 ~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~Pti~~~  222 (358)
                      +.++|++.+.+ .+++++|.|||+||++|+.+.|.+.++++.+   +++.|+.||++++.   +++++|+|.++||+++|
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~   78 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY   78 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence            34678888753 3789999999999999999999999999998   46899999998764   89999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHH
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                      ++|. ...++.| ...+.|.+-+.
T Consensus        79 ~~G~-~v~~~~G-~~~~~l~~~~~  100 (103)
T cd02985          79 KDGE-KIHEEEG-IGPDELIGDVL  100 (103)
T ss_pred             eCCe-EEEEEeC-CCHHHHHHHHH
Confidence            8774 5677777 45566666554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.75  E-value=1.1e-17  Score=125.31  Aligned_cols=98  Identities=17%  Similarity=0.434  Sum_probs=84.5

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        27 ~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      .-|.++|.++++++++++|+|||+||++|+.+.|.+.++++.+++ ..+.++.+|++ +.+++++|+|.++||+++|++|
T Consensus         4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g   81 (102)
T cd02948           4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG   81 (102)
T ss_pred             ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence            347889999998899999999999999999999999999998863 34889999999 7889999999999999999876


Q ss_pred             CCCcccccCCCCHHHHHHHHhc
Q 018270          107 SLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       107 ~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      ... .+..| .+.+.+.++|.+
T Consensus        82 ~~~-~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          82 ELV-AVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             EEE-EEEec-CChHHHHHHHhh
Confidence            533 56666 488889888864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.75  E-value=2.4e-17  Score=122.47  Aligned_cols=96  Identities=21%  Similarity=0.298  Sum_probs=86.0

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCC--CcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~--C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      ..+++..||++.+ ..+..++|.||++|  |++|+.+.|.++++++.+.  +.+.|+++|+++++.++.+|+|.++||++
T Consensus        12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~--~~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC--CcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            3468999999988 78899999999997  9999999999999999985  56889999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHH
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFV  242 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~  242 (358)
                      +|++| +....+.|..+.+++.
T Consensus        89 ~fkdG-k~v~~~~G~~~~~e~~  109 (111)
T cd02965          89 FFRDG-RYVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEECC-EEEEEEeCccCHHHHh
Confidence            99998 4566778988888775

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.74  E-value=9e-18  Score=125.62  Aligned_cols=100  Identities=58%  Similarity=1.052  Sum_probs=90.2

Q ss_pred             EcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeC
Q 018270          145 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK  224 (358)
Q Consensus       145 ~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~  224 (358)
                      +++.++|.+.+ .++++++|.||++||++|+.+.|.|.++++.++....+.++.+|++.+..++++|+|.++||+++|++
T Consensus         2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            47788999988 45559999999999999999999999999998645689999999999999999999999999999998


Q ss_pred             CCcceeeecCCCCHHHHHHHH
Q 018270          225 GNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       225 g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      ++....+|.|..+.+++.+|+
T Consensus        81 ~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCcccccCCCCcCHHHHHhhC
Confidence            867788899999999998874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.74  E-value=1.5e-17  Score=125.34  Aligned_cols=95  Identities=41%  Similarity=0.875  Sum_probs=83.8

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~  109 (358)
                      ++|++. .++++++|.||++||++|+.+.|.|+++++.+++. ..+.++.+||++.+.++++|+|.++|++++|.++  .
T Consensus         7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~--~   83 (104)
T cd03000           7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD--L   83 (104)
T ss_pred             hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--C
Confidence            778875 45789999999999999999999999999998642 3599999999999999999999999999999655  3


Q ss_pred             cccccCCCCHHHHHHHHhc
Q 018270          110 PKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       110 ~~~~~g~~~~~~i~~~i~~  128 (358)
                      ...|.|.++.+.+.+|+++
T Consensus        84 ~~~~~G~~~~~~l~~~~~~  102 (104)
T cd03000          84 AYNYRGPRTKDDIVEFANR  102 (104)
T ss_pred             ceeecCCCCHHHHHHHHHh
Confidence            3679999999999999975

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.73  E-value=2.2e-17  Score=124.40  Aligned_cols=95  Identities=25%  Similarity=0.487  Sum_probs=84.0

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCcc----chhhHhhcCccCCCeEEEc
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDE----HKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~~~  103 (358)
                      ++|.++++++++++|.||++||++|+.+.|.+   .++++.++  +.+.++.+|+++    ..+++++|+|.++|++++|
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~   79 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK--KDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY   79 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh--CCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence            56888888999999999999999999999988   67888886  379999999987    5789999999999999999


Q ss_pred             cC-CCCCcccccCCCCHHHHHHHHh
Q 018270          104 PK-GSLEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus       104 ~~-~~~~~~~~~g~~~~~~i~~~i~  127 (358)
                      ++ ++..+.++.|..+.+++.++|.
T Consensus        80 ~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          80 GPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCCCcccccccCHHHHHHHhC
Confidence            86 5666688999999999998873

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.73  E-value=3.1e-17  Score=122.93  Aligned_cols=97  Identities=23%  Similarity=0.441  Sum_probs=82.3

Q ss_pred             cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270          146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g  225 (358)
                      -+.++|+.++ +.+++++|.|||+||++|+.+.|.+++++..+. ...+.|+.+|++ +.+++++|+|+++||+++|++|
T Consensus         5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~-~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g   81 (102)
T cd02948           5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG-DDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG   81 (102)
T ss_pred             cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC-CCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence            3678899987 678899999999999999999999999999986 235789999999 7789999999999999999977


Q ss_pred             CcceeeecCCCCHHHHHHHHHH
Q 018270          226 NKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       226 ~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      . ...+..| .+.+.+.++|.+
T Consensus        82 ~-~~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          82 E-LVAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             E-EEEEEec-CChHHHHHHHhh
Confidence            4 4445555 488888888864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.73  E-value=2.8e-17  Score=125.48  Aligned_cols=100  Identities=40%  Similarity=0.780  Sum_probs=83.0

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCc--ccHHHHHhcCCCcccE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDAD--KYKDLAEKYGVSGFPT  218 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~--~~~~l~~~~~v~~~Pt  218 (358)
                      .+.+++..+|++.+.+.+++++|.||++||++|+.+.|.|+++++.++.. +.+.++.+||+  .+.+++++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            47889999999999777789999999999999999999999999998643 35899999986  4678999999999999


Q ss_pred             EEEEeCCCcc---eeeecCC-CCHHHH
Q 018270          219 LKFFPKGNKD---GEEYGGG-RDLEDF  241 (358)
Q Consensus       219 i~~~~~g~~~---~~~~~g~-~~~~~l  241 (358)
                      +++|++|.+.   ...|.|. +..+.+
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNEL  108 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHH
Confidence            9999988652   2355555 544444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.73  E-value=2e-17  Score=124.18  Aligned_cols=95  Identities=21%  Similarity=0.352  Sum_probs=79.9

Q ss_pred             ChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch---hhHhhcCccCCCeEEEc
Q 018270           29 TEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK---SLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        29 ~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~P~l~~~  103 (358)
                      |.++|++.++  ++++++|+|||+||++|+.+.|.++++++.+   +.+.|+.||++++.   +++++|+|.++||+++|
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~   78 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY   78 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence            4678888884  3899999999999999999999999999988   45899999999874   89999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhc
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      ++|. ...++.| ...+++.+.+..
T Consensus        79 ~~G~-~v~~~~G-~~~~~l~~~~~~  101 (103)
T cd02985          79 KDGE-KIHEEEG-IGPDELIGDVLY  101 (103)
T ss_pred             eCCe-EEEEEeC-CCHHHHHHHHHh
Confidence            7765 4478888 556777766543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.73  E-value=2.4e-17  Score=152.76  Aligned_cols=108  Identities=31%  Similarity=0.616  Sum_probs=93.9

Q ss_pred             CCCCceEcCcccHHHHHh--cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-HHH-HhcCCC
Q 018270          139 VPSNVVVLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DLA-EKYGVS  214 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~--~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-~l~-~~~~v~  214 (358)
                      ..+.|++|+..||++++.  +.+++++|.||||||++|+.+.|.|+++|+.++. .++.|+.||++.+. .++ ++|+|.
T Consensus       349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~-~~v~~~kVdvD~~~~~~~~~~~~I~  427 (463)
T TIGR00424       349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLG  427 (463)
T ss_pred             CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCccHHHHHHcCCC
Confidence            456799999999999983  4788999999999999999999999999999963 24889999998653 444 689999


Q ss_pred             cccEEEEEeCCCcceeeec-CCCCHHHHHHHHHH
Q 018270          215 GFPTLKFFPKGNKDGEEYG-GGRDLEDFVSFINE  247 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~-g~~~~~~l~~~i~~  247 (358)
                      ++||+++|++|+..+..|. |.++.++|+.||+.
T Consensus       428 ~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       428 SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            9999999999977788897 57999999999985

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.73  E-value=3.2e-17  Score=151.97  Aligned_cols=109  Identities=31%  Similarity=0.641  Sum_probs=96.8

Q ss_pred             CCCCceEcCcccHHHHHh--cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-ccHHHHH-hcCCC
Q 018270          139 VPSNVVVLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAE-KYGVS  214 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~--~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~l~~-~~~v~  214 (358)
                      ....++.++.++|++++.  +.+++++|.||+|||++|+.+.|.|+++++.+.. .++.|+++|++ .+.+++. +|+|.
T Consensus       343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~~~~~la~~~~~I~  421 (457)
T PLN02309        343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLG  421 (457)
T ss_pred             CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCcchHHHHhhCCCc
Confidence            345789999999999873  5788999999999999999999999999999863 36999999999 7788886 69999


Q ss_pred             cccEEEEEeCCCcceeeecC-CCCHHHHHHHHHHh
Q 018270          215 GFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFINEK  248 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~  248 (358)
                      ++||+++|++|...+..|.| .++.+.|++||+..
T Consensus       422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            99999999999878889985 69999999999863

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.73  E-value=8.2e-17  Score=122.92  Aligned_cols=102  Identities=44%  Similarity=0.867  Sum_probs=84.0

Q ss_pred             CeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCc--cchhhHhhcCccCCCe
Q 018270           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCD--EHKSLCSKYGVQGYPT   99 (358)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~--~~~~l~~~~~i~~~P~   99 (358)
                      .+.+++.++|++.+ ..+++++|.||++||++|+.+.|.|+++++.+++. +.+.++.+||+  .+.++|++|+|.++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            57899999999998 44569999999999999999999999999988643 35899999986  4678999999999999


Q ss_pred             EEEccCCCCC---cccccCC-CCHHHHHHH
Q 018270          100 IQWFPKGSLE---PKKYEGP-RSTEALAEY  125 (358)
Q Consensus       100 l~~~~~~~~~---~~~~~g~-~~~~~i~~~  125 (358)
                      +++|+++...   ...|+|. +..+++.+.
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNELREA  111 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence            9999888633   2456665 666666543

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.72  E-value=4.2e-18  Score=143.91  Aligned_cols=106  Identities=40%  Similarity=0.737  Sum_probs=96.3

Q ss_pred             cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC---CCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL---EDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~---~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      ++..|++.++ +....|+|.|||+||+..+.++|.|+++|..++.   ++++++++|||+.+..++.+|.|..|||+.+|
T Consensus         1 lt~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf   79 (375)
T KOG0912|consen    1 LTSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF   79 (375)
T ss_pred             CccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence            3567888888 6789999999999999999999999999998753   36899999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      .+|.-....|.|.|+.+.|.+||+++..+.
T Consensus        80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~  109 (375)
T KOG0912|consen   80 RNGEMMKREYRGQRSVEALIEFIEKQLSDP  109 (375)
T ss_pred             eccchhhhhhccchhHHHHHHHHHHHhccH
Confidence            999766678999999999999999987765

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.71  E-value=7.1e-17  Score=128.37  Aligned_cols=94  Identities=26%  Similarity=0.549  Sum_probs=81.2

Q ss_pred             CCCCceEcCcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc--
Q 018270          139 VPSNVVVLTADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--  215 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--  215 (358)
                      .+..+.+++.++|++.+. +.+++++|.||++||++|+.+.|.++++++.+.. .++.|+.||++++++++++|+|.+  
T Consensus        26 ~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~  104 (152)
T cd02962          26 GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSP  104 (152)
T ss_pred             CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecC
Confidence            357789999999999874 3457899999999999999999999999999852 469999999999999999999988  


Q ss_pred             ----ccEEEEEeCCCcceeeecC
Q 018270          216 ----FPTLKFFPKGNKDGEEYGG  234 (358)
Q Consensus       216 ----~Pti~~~~~g~~~~~~~~g  234 (358)
                          +||+++|++|. ...++.|
T Consensus       105 ~v~~~PT~ilf~~Gk-~v~r~~G  126 (152)
T cd02962         105 LSKQLPTIILFQGGK-EVARRPY  126 (152)
T ss_pred             CcCCCCEEEEEECCE-EEEEEec
Confidence                99999999874 4555554

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.71  E-value=3.7e-17  Score=121.44  Aligned_cols=99  Identities=12%  Similarity=0.158  Sum_probs=89.0

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCC--ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~--c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ...+-.+|..||++.++.+.+++|.||++|  ||+|+.+.|.+++++++++  +.+.++.+|++++++++.+|+|.++||
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~--~~v~f~kVdid~~~~la~~f~V~sIPT   86 (111)
T cd02965           9 RHGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGRADEQALAARFGVLRTPA   86 (111)
T ss_pred             hcCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC--CcEEEEEEECCCCHHHHHHcCCCcCCE
Confidence            356788999999999988899999999997  9999999999999999997  568999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHH
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALA  123 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~  123 (358)
                      +++|++|... ....|..+.+++.
T Consensus        87 li~fkdGk~v-~~~~G~~~~~e~~  109 (111)
T cd02965          87 LLFFRDGRYV-GVLAGIRDWDEYV  109 (111)
T ss_pred             EEEEECCEEE-EEEeCccCHHHHh
Confidence            9999988644 6778988877664

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.71  E-value=1.9e-17  Score=158.37  Aligned_cols=111  Identities=49%  Similarity=0.925  Sum_probs=99.4

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      .+..++.++|++.+ ..+++++|.|||+||++|+.+.|.|.++++.+... .++.++.|||+.+.++|++|+|.++||++
T Consensus         2 ~v~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~   80 (462)
T TIGR01130         2 DVLVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK   80 (462)
T ss_pred             CceECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence            47789999999998 67789999999999999999999999999988643 46999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      +|++|+.....|.|.++.+.|.+|+++.++...
T Consensus        81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  113 (462)
T TIGR01130        81 IFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAV  113 (462)
T ss_pred             EEeCCccceeEecCCCCHHHHHHHHHHhcCCCc
Confidence            999885436889999999999999999876543

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.71  E-value=6.4e-17  Score=149.98  Aligned_cols=106  Identities=29%  Similarity=0.600  Sum_probs=93.0

Q ss_pred             CCCeEEcChhhHHHHhc---CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-hhH-hhcCccC
Q 018270           22 ADDVVVLTEDNFEKEVG---QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-SLC-SKYGVQG   96 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~---~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~-~~~~i~~   96 (358)
                      ...|..||.+||++.++   .+++++|.|||+||++|+.+.|.|+++++.+.+. .+.|+.|||+.+. .++ ++|+|.+
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~  428 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  428 (463)
T ss_pred             CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence            45799999999999884   7889999999999999999999999999998742 4889999999764 455 7899999


Q ss_pred             CCeEEEccCCCCCccccc-CCCCHHHHHHHHhc
Q 018270           97 YPTIQWFPKGSLEPKKYE-GPRSTEALAEYVNN  128 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~-g~~~~~~i~~~i~~  128 (358)
                      +||+++|++|...+..|. |.++.++|..|++.
T Consensus       429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            999999999876668897 58999999999975

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.71  E-value=6.7e-17  Score=149.84  Aligned_cols=107  Identities=31%  Similarity=0.626  Sum_probs=95.2

Q ss_pred             CCCeEEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-cchhhHh-hcCccC
Q 018270           22 ADDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCS-KYGVQG   96 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~-~~~i~~   96 (358)
                      ...|..++.++|++.+   +.+++++|.||++||++|+.+.|.|+++++.+.+ ..+.|+.+||+ .+.++|. +|+|.+
T Consensus       344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~~~~~la~~~~~I~~  422 (457)
T PLN02309        344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLGS  422 (457)
T ss_pred             CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCcchHHHHhhCCCce
Confidence            3478999999999987   5789999999999999999999999999999874 35999999999 7788986 699999


Q ss_pred             CCeEEEccCCCCCcccccC-CCCHHHHHHHHhcc
Q 018270           97 YPTIQWFPKGSLEPKKYEG-PRSTEALAEYVNNE  129 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g-~~~~~~i~~~i~~~  129 (358)
                      +||+++|.+|...+..|.| .++.++|..|++..
T Consensus       423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            9999999988766788975 79999999999753

>TIGR01068 thioredoxin thioredoxin

Probab=99.71  E-value=9.4e-17  Score=120.25  Aligned_cols=99  Identities=34%  Similarity=0.728  Sum_probs=87.2

Q ss_pred             cChhhHHHHhcC-CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           28 LTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        28 l~~~~f~~~~~~-~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      ++.++|.+.++. +++++|+||++||++|+.+.|.+.++++.++  +.+.++.+|+++++.++++|+|.++|++++|.+|
T Consensus         1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g   78 (101)
T TIGR01068         1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE--GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG   78 (101)
T ss_pred             CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence            356788888854 5699999999999999999999999998886  5699999999999999999999999999999766


Q ss_pred             CCCcccccCCCCHHHHHHHHhcc
Q 018270          107 SLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       107 ~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .. ...+.|..+.+.+.+|+++.
T Consensus        79 ~~-~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        79 KE-VDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             cE-eeeecCCCCHHHHHHHHHhh
Confidence            53 46788999999999999764

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR01068 thioredoxin thioredoxin

Probab=99.71  E-value=1.3e-16  Score=119.45  Aligned_cols=100  Identities=38%  Similarity=0.731  Sum_probs=88.4

Q ss_pred             cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270          146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g  225 (358)
                      ++.++|.+.+.+.+++++|.||++||++|+.+.|.++++++.+.  +++.++.+|++.+..++++|+|.++|++++|++|
T Consensus         1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g   78 (101)
T TIGR01068         1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE--GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG   78 (101)
T ss_pred             CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence            35678888886667799999999999999999999999998884  4699999999999999999999999999999877


Q ss_pred             CcceeeecCCCCHHHHHHHHHHh
Q 018270          226 NKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       226 ~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      . ....+.|..+.+++.+||++.
T Consensus        79 ~-~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        79 K-EVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             c-EeeeecCCCCHHHHHHHHHhh
Confidence            4 456778999999999999864

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.71  E-value=1.4e-17  Score=140.54  Aligned_cols=94  Identities=32%  Similarity=0.761  Sum_probs=84.9

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCC-CeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      ....++|.||||||+||+.+.|+|.+++..++..+ .+.++++||+..+.++.+|||++|||+.+|++|  ..+.|.|++
T Consensus        42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~a~dYRG~R  119 (468)
T KOG4277|consen   42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--HAIDYRGGR  119 (468)
T ss_pred             cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC--eeeecCCCc
Confidence            55789999999999999999999999999886443 689999999999999999999999999999977  789999999


Q ss_pred             CHHHHHHHHHHhcCCCC
Q 018270          237 DLEDFVSFINEKCGTSR  253 (358)
Q Consensus       237 ~~~~l~~~i~~~~~~~~  253 (358)
                      +.+++++|..+..+.-.
T Consensus       120 ~Kd~iieFAhR~a~aiI  136 (468)
T KOG4277|consen  120 EKDAIIEFAHRCAAAII  136 (468)
T ss_pred             cHHHHHHHHHhccccee
Confidence            99999999988766543

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.70  E-value=1.2e-16  Score=124.30  Aligned_cols=102  Identities=18%  Similarity=0.290  Sum_probs=84.6

Q ss_pred             CcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE-EEeC
Q 018270          147 TADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK-FFPK  224 (358)
Q Consensus       147 ~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~-~~~~  224 (358)
                      +..+|++.+. ..+++++|.|||+||+||+.+.|.++++|+.+.  +.+.|++||+|+++++++.|+|.+.|+++ +|++
T Consensus        10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~--~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~   87 (142)
T PLN00410         10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK--NFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN   87 (142)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence            4678888875 457899999999999999999999999999984  34788999999999999999999776666 8888


Q ss_pred             CCcceeeecC--------CCCHHHHHHHHHHhcC
Q 018270          225 GNKDGEEYGG--------GRDLEDFVSFINEKCG  250 (358)
Q Consensus       225 g~~~~~~~~g--------~~~~~~l~~~i~~~~~  250 (358)
                      |.....+..|        ..+.++|.+-+.....
T Consensus        88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~  121 (142)
T PLN00410         88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR  121 (142)
T ss_pred             CeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence            8656666677        4677788877776553

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.70  E-value=2e-16  Score=125.56  Aligned_cols=102  Identities=23%  Similarity=0.441  Sum_probs=84.4

Q ss_pred             cccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeCC
Q 018270          148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       148 ~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g  225 (358)
                      ...|+..+ ..+++++|.||++||++|+.+.|.+.++++.+..  .+.|+.||++  ....++++|+|.++||+++|..+
T Consensus        10 ~~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~   86 (142)
T cd02950          10 STPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE   86 (142)
T ss_pred             cCCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence            45677766 7789999999999999999999999999999863  3555555555  44688999999999999999755


Q ss_pred             CcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          226 NKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       226 ~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      ++....+.|..+.++|.++|.+.+...
T Consensus        87 G~~v~~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          87 GNEEGQSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence            567778899999999999999887544

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.70  E-value=1.4e-16  Score=121.67  Aligned_cols=89  Identities=26%  Similarity=0.404  Sum_probs=77.6

Q ss_pred             CCceEcCcccHHHHHhcC--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          141 SNVVVLTADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ..+.+++.++|.+.+.+.  +++++|.||+|||++|+.+.|.+++++..+.   ++.|++||++++ .++++|+|.++||
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt   79 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPT   79 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCE
Confidence            347788899999988555  3899999999999999999999999999984   588999999988 9999999999999


Q ss_pred             EEEEeCCCcceeeecC
Q 018270          219 LKFFPKGNKDGEEYGG  234 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g  234 (358)
                      +++|++|. ...++.|
T Consensus        80 ~~~f~~G~-~v~~~~G   94 (113)
T cd02957          80 LLVYKNGE-LIDNIVG   94 (113)
T ss_pred             EEEEECCE-EEEEEec
Confidence            99999884 4555555

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.2e-16  Score=118.86  Aligned_cols=86  Identities=35%  Similarity=0.740  Sum_probs=72.2

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      .+++.++|+|||+|||||+.+.|.+.+||..|.   ++.|++||+++..++++.++|...||+++|++|. ....+.|.-
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~vGa~   94 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVVGAN   94 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEecCC
Confidence            456899999999999999999999999999994   5999999999999999999999999999999885 455555543


Q ss_pred             CHHHHHHHHHH
Q 018270          237 DLEDFVSFINE  247 (358)
Q Consensus       237 ~~~~l~~~i~~  247 (358)
                       .+.+.+.+..
T Consensus        95 -~~~l~~~i~~  104 (106)
T KOG0907|consen   95 -KAELEKKIAK  104 (106)
T ss_pred             -HHHHHHHHHh
Confidence             3366655543

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.69  E-value=1.5e-16  Score=119.88  Aligned_cols=94  Identities=29%  Similarity=0.492  Sum_probs=81.4

Q ss_pred             ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcc----cHHHHHhcCCCcccEEEE
Q 018270          149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       149 ~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~Pti~~  221 (358)
                      +.|++.+ ..+++++|.||++||++|+.+.|.+   .++++.+.  +++.++.+|+++    ...++++|+|.++||+++
T Consensus         2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953           2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK--KDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh--CCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            3566766 6789999999999999999999988   57888875  379999999886    578999999999999999


Q ss_pred             EeC-CCcceeeecCCCCHHHHHHHH
Q 018270          222 FPK-GNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       222 ~~~-g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      |.+ +++.+.++.|..+.++|.++|
T Consensus        79 ~~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          79 YGPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             ECCCCCCCCcccccccCHHHHHHHh
Confidence            986 456788899999999999886

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.69  E-value=1.8e-16  Score=152.28  Aligned_cols=112  Identities=45%  Similarity=0.887  Sum_probs=100.6

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      +..+..++..+|+..+ ..++.++|.||++||++|+.+.|.|.++++.+... .++.++.|||+.+.++|++|+|.++||
T Consensus        31 ~~~v~~l~~~~f~~~i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt  109 (477)
T PTZ00102         31 SEHVTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPT  109 (477)
T ss_pred             CCCcEEcchhhHHHHH-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccE
Confidence            4568899999999988 66789999999999999999999999999988543 579999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      +++|++|+.  ..|.|.++.+.|.+|+++..++...
T Consensus       110 ~~~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~  143 (477)
T PTZ00102        110 IKFFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVT  143 (477)
T ss_pred             EEEEECCce--EEecCCCCHHHHHHHHHHhhCCCce
Confidence            999998854  4899999999999999999876543

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.68  E-value=2.5e-16  Score=122.58  Aligned_cols=99  Identities=14%  Similarity=0.245  Sum_probs=83.8

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE-EccC
Q 018270           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ-WFPK  105 (358)
Q Consensus        29 ~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~-~~~~  105 (358)
                      +.++|++.+  .++++++|.|||+||++|+.+.|.+++++++++  +.+.|++||++++++++..|+|.+.|+++ +|++
T Consensus        10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~--~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~   87 (142)
T PLN00410         10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK--NFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN   87 (142)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence            468899888  568899999999999999999999999999986  55889999999999999999999887766 8887


Q ss_pred             CCCCcccccC--------CCCHHHHHHHHhcc
Q 018270          106 GSLEPKKYEG--------PRSTEALAEYVNNE  129 (358)
Q Consensus       106 ~~~~~~~~~g--------~~~~~~i~~~i~~~  129 (358)
                      |.....+..|        ..+.+++.+-++..
T Consensus        88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~  119 (142)
T PLN00410         88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETV  119 (142)
T ss_pred             CeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence            7645466667        56778888777664

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.68  E-value=2.6e-16  Score=124.89  Aligned_cols=100  Identities=24%  Similarity=0.449  Sum_probs=84.8

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEEEccCCC
Q 018270           30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      ...|++.+..+++++|+||++||++|+.+.|.+.++++.+.  +.+.|+.||.+.  ...++++|+|.++|++++|++++
T Consensus        10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~--~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G   87 (142)
T cd02950          10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG--DQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG   87 (142)
T ss_pred             cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc--cCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence            45678888889999999999999999999999999999986  346666666654  45889999999999999997666


Q ss_pred             CCcccccCCCCHHHHHHHHhccCC
Q 018270          108 LEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       108 ~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      ....++.|..+.+++.+++.+...
T Consensus        88 ~~v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          88 NEEGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHc
Confidence            566788899999999999988654

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.68  E-value=5.2e-16  Score=118.14  Aligned_cols=87  Identities=25%  Similarity=0.359  Sum_probs=75.6

Q ss_pred             CceEcCc-ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          142 NVVVLTA-DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       142 ~v~~l~~-~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      .+..++. .+|.+.+ ..+++++|.||+|||++|+.+.|.++++++.+.   ++.|++||++++++++++|+|.++||++
T Consensus         5 ~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~l   80 (113)
T cd02989           5 KYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTVI   80 (113)
T ss_pred             CeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence            4566666 8899988 567899999999999999999999999999873   5899999999999999999999999999


Q ss_pred             EEeCCCcceeeec
Q 018270          221 FFPKGNKDGEEYG  233 (358)
Q Consensus       221 ~~~~g~~~~~~~~  233 (358)
                      +|++|. ...++.
T Consensus        81 ~fk~G~-~v~~~~   92 (113)
T cd02989          81 LFKNGK-TVDRIV   92 (113)
T ss_pred             EEECCE-EEEEEE
Confidence            999884 333443

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.67  E-value=2.9e-16  Score=116.49  Aligned_cols=82  Identities=18%  Similarity=0.277  Sum_probs=71.6

Q ss_pred             ccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc
Q 018270          149 DNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  227 (358)
Q Consensus       149 ~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~  227 (358)
                      +.|++.+.+ .+++|+|.|+|+||+||+.+.|.++++|+.+.  +.+.|++||+++.++++++|+|.+.||++||.+|+.
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~--~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh   80 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS--KMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH   80 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc--CceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence            456776644 48999999999999999999999999999994  239999999999999999999999999999999866


Q ss_pred             ceeee
Q 018270          228 DGEEY  232 (358)
Q Consensus       228 ~~~~~  232 (358)
                      ....|
T Consensus        81 ~~~d~   85 (114)
T cd02986          81 MKVDY   85 (114)
T ss_pred             EEEec
Confidence            55555

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.67  E-value=2.3e-16  Score=120.06  Aligned_cols=87  Identities=20%  Similarity=0.285  Sum_probs=77.0

Q ss_pred             CeEEcCh-hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVLTE-DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l~~-~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      .+..++. ++|.+.++++.+++|+||++||++|+.+.|.++++++.+   +.+.|++||+++.++++++|+|.++||+++
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~---~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~   81 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH---LETKFIKVNAEKAPFLVEKLNIKVLPTVIL   81 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc---CCCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence            4566666 899999988899999999999999999999999999987   458999999999999999999999999999


Q ss_pred             ccCCCCCccccc
Q 018270          103 FPKGSLEPKKYE  114 (358)
Q Consensus       103 ~~~~~~~~~~~~  114 (358)
                      |++|... .++.
T Consensus        82 fk~G~~v-~~~~   92 (113)
T cd02989          82 FKNGKTV-DRIV   92 (113)
T ss_pred             EECCEEE-EEEE
Confidence            9988643 3443

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.67  E-value=1.4e-16  Score=121.73  Aligned_cols=88  Identities=24%  Similarity=0.425  Sum_probs=77.2

Q ss_pred             CCeEEcChhhHHHHhcCC---CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           23 DDVVVLTEDNFEKEVGQD---RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~---~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ..+.+++.++|.+.+.+.   ++++|+||++||++|+.+.|.++++++.+.   .+.|++||++++ .++++|+|.++||
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt   79 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPT   79 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCE
Confidence            457788999999988544   899999999999999999999999999984   588999999998 9999999999999


Q ss_pred             EEEccCCCCCcccccC
Q 018270          100 IQWFPKGSLEPKKYEG  115 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g  115 (358)
                      +++|.+|... .++.|
T Consensus        80 ~~~f~~G~~v-~~~~G   94 (113)
T cd02957          80 LLVYKNGELI-DNIVG   94 (113)
T ss_pred             EEEEECCEEE-EEEec
Confidence            9999988643 55555

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4e-16  Score=116.06  Aligned_cols=86  Identities=31%  Similarity=0.680  Sum_probs=73.6

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCC
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR  117 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~  117 (358)
                      .++++++|+|||+|||+|+.+.|.+.+++.+|.   ++.|++||+++..+++++++|...||+++|++|... .++.|..
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~-~~~vGa~   94 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV-DEVVGAN   94 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE-EEEecCC
Confidence            446999999999999999999999999999995   499999999999999999999999999999887654 6777644


Q ss_pred             CHHHHHHHHhc
Q 018270          118 STEALAEYVNN  128 (358)
Q Consensus       118 ~~~~i~~~i~~  128 (358)
                      . +.+.+.+..
T Consensus        95 ~-~~l~~~i~~  104 (106)
T KOG0907|consen   95 K-AELEKKIAK  104 (106)
T ss_pred             H-HHHHHHHHh
Confidence            3 366665543

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.65  E-value=7.5e-16  Score=114.54  Aligned_cols=94  Identities=27%  Similarity=0.551  Sum_probs=79.6

Q ss_pred             ChhhHHHHhcCC--CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           29 TEDNFEKEVGQD--RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        29 ~~~~f~~~~~~~--~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      +.++|++.+...  ++++|.||++||++|+.+.|.++++++.+.  ..+.++.+|+++.++++++|++.++||+++|.+|
T Consensus         1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~--~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g   78 (97)
T cd02984           1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF--PSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG   78 (97)
T ss_pred             CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC--CceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence            357888888555  999999999999999999999999999873  6799999999999999999999999999999866


Q ss_pred             CCCcccccCCCCHHHHHHHH
Q 018270          107 SLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus       107 ~~~~~~~~g~~~~~~i~~~i  126 (358)
                      . ...++.| .+.+.|.+.|
T Consensus        79 ~-~~~~~~g-~~~~~l~~~~   96 (97)
T cd02984          79 T-IVDRVSG-ADPKELAKKV   96 (97)
T ss_pred             E-EEEEEeC-CCHHHHHHhh
Confidence            4 4355666 4667776655

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.65  E-value=1e-15  Score=113.77  Aligned_cols=94  Identities=24%  Similarity=0.590  Sum_probs=78.5

Q ss_pred             cccHHHHHhcC-CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270          148 ADNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  226 (358)
Q Consensus       148 ~~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~  226 (358)
                      .++|++.+... +++++|.||++||++|+.+.|.++++++.+  ..++.++.+|+++..+++++|+|.++||+++|++| 
T Consensus         2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-   78 (97)
T cd02984           2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA--FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG-   78 (97)
T ss_pred             HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh--CCceEEEEEccccCHHHHHhcCCccccEEEEEECC-
Confidence            45778877544 589999999999999999999999999987  36899999999999999999999999999999876 


Q ss_pred             cceeeecCCCCHHHHHHHH
Q 018270          227 KDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       227 ~~~~~~~g~~~~~~l~~~i  245 (358)
                      +...++.| .+.+.|.+.|
T Consensus        79 ~~~~~~~g-~~~~~l~~~~   96 (97)
T cd02984          79 TIVDRVSG-ADPKELAKKV   96 (97)
T ss_pred             EEEEEEeC-CCHHHHHHhh
Confidence            34445555 4567766654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.64  E-value=1.9e-15  Score=112.23  Aligned_cols=93  Identities=28%  Similarity=0.557  Sum_probs=82.8

Q ss_pred             HHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCccee
Q 018270          151 FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE  230 (358)
Q Consensus       151 f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~  230 (358)
                      .+..+...++++++.||++||++|+.+.|.++++++.+.  +++.++.+|++++++++++++|.++|++++|++| +...
T Consensus         5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v~   81 (97)
T cd02949           5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD--GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELVK   81 (97)
T ss_pred             HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEEE
Confidence            345555788999999999999999999999999999885  4699999999999999999999999999999875 5678


Q ss_pred             eecCCCCHHHHHHHHH
Q 018270          231 EYGGGRDLEDFVSFIN  246 (358)
Q Consensus       231 ~~~g~~~~~~l~~~i~  246 (358)
                      ++.|..+.++|.+|++
T Consensus        82 ~~~g~~~~~~~~~~l~   97 (97)
T cd02949          82 EISGVKMKSEYREFIE   97 (97)
T ss_pred             EEeCCccHHHHHHhhC
Confidence            8999999999998873

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.64  E-value=2.4e-15  Score=114.58  Aligned_cols=96  Identities=28%  Similarity=0.372  Sum_probs=81.5

Q ss_pred             HHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ce
Q 018270          151 FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DG  229 (358)
Q Consensus       151 f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~  229 (358)
                      |.+.+ ..+..++|.||++||++|+.+.|.+++++..+   +.+.+..+|.+++++++++|+|.++||+++|++|+. ..
T Consensus        15 ~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~   90 (113)
T cd02975          15 FFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS---DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG   90 (113)
T ss_pred             HHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc---CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence            43434 45667899999999999999999999999875   468899999999999999999999999999998754 33


Q ss_pred             eeecCCCCHHHHHHHHHHhcC
Q 018270          230 EEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       230 ~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      .+|.|..+..++.+||...++
T Consensus        91 ~~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          91 IRYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             EEEEecCchHHHHHHHHHHHh
Confidence            478899999999999987654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.63  E-value=1.8e-15  Score=112.30  Aligned_cols=87  Identities=29%  Similarity=0.538  Sum_probs=79.2

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCC
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR  117 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~  117 (358)
                      +.+++++|.||++||++|+.+.|.++++++.++  +.+.++.+|++++++++.+++|.++|++++|++|. ....+.|..
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~-~v~~~~g~~   87 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD--GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE-LVKEISGVK   87 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe-EEEEEeCCc
Confidence            678999999999999999999999999999986  46999999999999999999999999999998654 558889999


Q ss_pred             CHHHHHHHHh
Q 018270          118 STEALAEYVN  127 (358)
Q Consensus       118 ~~~~i~~~i~  127 (358)
                      +.+++.+|++
T Consensus        88 ~~~~~~~~l~   97 (97)
T cd02949          88 MKSEYREFIE   97 (97)
T ss_pred             cHHHHHHhhC
Confidence            9999998874

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PTZ00051 thioredoxin; Provisional

Probab=99.63  E-value=1.8e-15  Score=112.72  Aligned_cols=90  Identities=34%  Similarity=0.683  Sum_probs=77.5

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCC
Q 018270           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL  108 (358)
Q Consensus        29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~  108 (358)
                      +.++|.++++.+++++|+||++||++|+.+.|.+.++++.+   .++.++.+|++++..++++|+|.++|++++|++|..
T Consensus         7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~   83 (98)
T PTZ00051          7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY---TKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSV   83 (98)
T ss_pred             CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc---CCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeE
Confidence            46788888888999999999999999999999999999976   458999999999999999999999999999977653


Q ss_pred             CcccccCCCCHHHHH
Q 018270          109 EPKKYEGPRSTEALA  123 (358)
Q Consensus       109 ~~~~~~g~~~~~~i~  123 (358)
                       ...+.|. ..++|.
T Consensus        84 -~~~~~G~-~~~~~~   96 (98)
T PTZ00051         84 -VDTLLGA-NDEALK   96 (98)
T ss_pred             -EEEEeCC-CHHHhh
Confidence             3677774 445443

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.62  E-value=4.2e-15  Score=121.79  Aligned_cols=104  Identities=21%  Similarity=0.339  Sum_probs=85.9

Q ss_pred             CCCCceEcCc-ccHHHHHhcCC--CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc
Q 018270          139 VPSNVVVLTA-DNFDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG  215 (358)
Q Consensus       139 ~~~~v~~l~~-~~f~~~~~~~~--~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~  215 (358)
                      ....+.+++. .+|.+.+...+  .+|+|.||++||++|+.+.|.+.++|..+   +.+.|++||++.. .++.+|+|.+
T Consensus        60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~---~~vkF~kVd~d~~-~l~~~f~v~~  135 (175)
T cd02987          60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY---PAVKFCKIRASAT-GASDEFDTDA  135 (175)
T ss_pred             CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC---CCeEEEEEeccch-hhHHhCCCCC
Confidence            4567888988 99999985444  48999999999999999999999999988   4699999999987 8999999999


Q ss_pred             ccEEEEEeCCCcceeeecC-------CCCHHHHHHHHHH
Q 018270          216 FPTLKFFPKGNKDGEEYGG-------GRDLEDFVSFINE  247 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g-------~~~~~~l~~~i~~  247 (358)
                      +||+++|++|.. ...+.|       ..+.+.|..|+.+
T Consensus       136 vPTlllyk~G~~-v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         136 LPALLVYKGGEL-IGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             CCEEEEEECCEE-EEEEechHHhcCCCCCHHHHHHHHHh
Confidence            999999998853 323322       3667777777654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.61  E-value=3.6e-15  Score=110.62  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=70.9

Q ss_pred             hhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           30 EDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        30 ~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      .+++++.+.  ++++++|.|+|+||++|+.+.|.+++++++++  +.+.|+.||.++.+++++.|+|...||.++|.+|.
T Consensus         2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~--~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk   79 (114)
T cd02986           2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS--KMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ   79 (114)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc--CceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence            356777773  68999999999999999999999999999995  34999999999999999999999999999998876


Q ss_pred             CCcccc
Q 018270          108 LEPKKY  113 (358)
Q Consensus       108 ~~~~~~  113 (358)
                      ..-..+
T Consensus        80 h~~~d~   85 (114)
T cd02986          80 HMKVDY   85 (114)
T ss_pred             EEEEec
Confidence            433333

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=4.8e-15  Score=122.21  Aligned_cols=107  Identities=29%  Similarity=0.561  Sum_probs=89.3

Q ss_pred             CcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270          147 TADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       147 ~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g  225 (358)
                      ++..|...+. ...+.++|+|+|.||+||+...|.|..++.+|   +..+|.+||.++.+..+..+||.+.||+++|.+|
T Consensus         8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY---p~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng   84 (288)
T KOG0908|consen    8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY---PGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNG   84 (288)
T ss_pred             CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC---cccEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence            3567777663 34579999999999999999999999999999   5789999999999999999999999999999998


Q ss_pred             CcceeeecCCCCHHHHHHHHHHhcCCCCCCCCC
Q 018270          226 NKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQ  258 (358)
Q Consensus       226 ~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~  258 (358)
                      .+ ...+ -+.++..|.+.|.++.+++....+.
T Consensus        85 ~k-id~~-qGAd~~gLe~kv~~~~stsaa~~~~  115 (288)
T KOG0908|consen   85 VK-IDQI-QGADASGLEEKVAKYASTSAASSGT  115 (288)
T ss_pred             eE-eeee-cCCCHHHHHHHHHHHhccCcccccC
Confidence            43 3333 4578889999999988877654433

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.60  E-value=6e-15  Score=115.03  Aligned_cols=98  Identities=20%  Similarity=0.373  Sum_probs=82.9

Q ss_pred             hhHHHHhcCC-CcEEEEEECCCChhhhhhhHHHH---HHHHHhhcCCceEEEEEeCccc-------------hhhHhhcC
Q 018270           31 DNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYE---KLGASFKKAKSVLIGKVDCDEH-------------KSLCSKYG   93 (358)
Q Consensus        31 ~~f~~~~~~~-~~~lv~fya~~c~~C~~~~~~~~---~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~   93 (358)
                      +.+.++.+++ ++++|.||++||++|+.+.|.+.   .+.+.++  +.+.++.+|.+.+             .+++.+|+
T Consensus         4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~   81 (125)
T cd02951           4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARKYR   81 (125)
T ss_pred             HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence            4566777888 99999999999999999999885   5666665  4688889998764             68999999


Q ss_pred             ccCCCeEEEccCC-CCCcccccCCCCHHHHHHHHhccC
Q 018270           94 VQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        94 i~~~P~l~~~~~~-~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      |.++||+++|.++ +....++.|..+.+.+.++++...
T Consensus        82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~  119 (125)
T cd02951          82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ  119 (125)
T ss_pred             CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence            9999999999987 666678899999999999888653

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.60  E-value=4.8e-15  Score=112.93  Aligned_cols=97  Identities=23%  Similarity=0.299  Sum_probs=82.9

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC-
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE-  109 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~-  109 (358)
                      ++|.+.+.....++|.||++||++|+.+.|.++++++.+   +.+.+..+|.+++++++++|+|.++|++++|++|+.. 
T Consensus        13 ~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~   89 (113)
T cd02975          13 EEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS---DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG   89 (113)
T ss_pred             HHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc---CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence            335555667778999999999999999999999999875   5589999999999999999999999999999876533 


Q ss_pred             cccccCCCCHHHHHHHHhccC
Q 018270          110 PKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       110 ~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ..++.|..+..++.+||....
T Consensus        90 ~~~~~G~~~~~el~~~i~~i~  110 (113)
T cd02975          90 GIRYYGLPAGYEFASLIEDIV  110 (113)
T ss_pred             eEEEEecCchHHHHHHHHHHH
Confidence            247889999999999988654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.59  E-value=7.1e-15  Score=107.83  Aligned_cols=93  Identities=37%  Similarity=0.743  Sum_probs=82.7

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCc
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP  110 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~  110 (358)
                      ++|.+.+..+++++|.||++||++|+.+.+.+.++++. .  +.+.++.+|++.+.+++++|++.++|++++|..|. ..
T Consensus         1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~   76 (93)
T cd02947           1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EV   76 (93)
T ss_pred             CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EE
Confidence            35778887779999999999999999999999999987 2  67999999999999999999999999999998776 44


Q ss_pred             ccccCCCCHHHHHHHHh
Q 018270          111 KKYEGPRSTEALAEYVN  127 (358)
Q Consensus       111 ~~~~g~~~~~~i~~~i~  127 (358)
                      ..+.|..+.+.+.++|+
T Consensus        77 ~~~~g~~~~~~l~~~i~   93 (93)
T cd02947          77 DRVVGADPKEELEEFLE   93 (93)
T ss_pred             EEEecCCCHHHHHHHhC
Confidence            78889888899988873

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PTZ00051 thioredoxin; Provisional

Probab=99.59  E-value=1.1e-14  Score=108.42  Aligned_cols=90  Identities=31%  Similarity=0.687  Sum_probs=76.1

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  226 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~  226 (358)
                      +.++|++++ +.++++++.||++||++|+.+.|.+.++++.+   .++.++.+|++++..++++|+|.++||+++|++|+
T Consensus         7 ~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~   82 (98)
T PTZ00051          7 SQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY---TKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS   82 (98)
T ss_pred             CHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc---CCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence            356777877 67889999999999999999999999999976   36899999999999999999999999999998774


Q ss_pred             cceeeecCCCCHHHHH
Q 018270          227 KDGEEYGGGRDLEDFV  242 (358)
Q Consensus       227 ~~~~~~~g~~~~~~l~  242 (358)
                       ....+.|. ..++|.
T Consensus        83 -~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         83 -VVDTLLGA-NDEALK   96 (98)
T ss_pred             -EEEEEeCC-CHHHhh
Confidence             55667774 444443

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.58  E-value=3.9e-13  Score=116.49  Aligned_cols=209  Identities=21%  Similarity=0.271  Sum_probs=140.6

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhh------HHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLA------PEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ   95 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~------~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~   95 (358)
                      ...|+.||.+||.+++++....+|+||.|--. .+...      ...-+++++.-....|.|+.||..++.++++++|+.
T Consensus        33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~  111 (383)
T PF01216_consen   33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE  111 (383)
T ss_dssp             S--CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred             ccceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence            45799999999999999999999999998732 22222      223345555445578999999999999999999999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCc-ccHHHHHhcCCCcEEEEEcCCCCccc
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTA-DNFDEIVLDKSKDVLVEFYAPWCGHC  174 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~-~~f~~~~~~~~~~v~v~f~a~~C~~c  174 (358)
                      ..+++.+|..|.  .+.|.|.++++.+++||......         .|..++. .++..+-.-...+.+|-|+.+.-   
T Consensus       112 E~~SiyVfkd~~--~IEydG~~saDtLVeFl~dl~ed---------PVeiIn~~~e~~~Fe~ied~~klIGyFk~~~---  177 (383)
T PF01216_consen  112 EEGSIYVFKDGE--VIEYDGERSADTLVEFLLDLLED---------PVEIINNKHELKAFERIEDDIKLIGYFKSED---  177 (383)
T ss_dssp             STTEEEEEETTE--EEEE-S--SHHHHHHHHHHHHSS---------SEEEE-SHHHHHHHHH--SS-EEEEE-SSTT---
T ss_pred             ccCcEEEEECCc--EEEecCccCHHHHHHHHHHhccc---------chhhhcChhhhhhhhhcccceeEEEEeCCCC---
Confidence            999999999884  48999999999999999987543         3445544 33333332244577777776631   


Q ss_pred             chhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC-CCHHHHHHHHHHhcCC
Q 018270          175 KNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFVSFINEKCGT  251 (358)
Q Consensus       175 ~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~~~i~~~~~~  251 (358)
                      ......|+++|+.|+  +-+.|..   .-++.+++++++. .-.+-+|.+-...|+...|. .+.+++.+||+++-.+
T Consensus       178 s~~yk~FeeAAe~F~--p~IkFfA---tfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rp  249 (383)
T PF01216_consen  178 SEHYKEFEEAAEHFQ--PYIKFFA---TFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRP  249 (383)
T ss_dssp             SHHHHHHHHHHHHCT--TTSEEEE---E-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-
T ss_pred             cHHHHHHHHHHHhhc--CceeEEE---EecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchh
Confidence            124558899999996  5666665   5568899999996 88888998887788877764 6889999999987543

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.58  E-value=1.1e-14  Score=119.45  Aligned_cols=102  Identities=17%  Similarity=0.323  Sum_probs=83.6

Q ss_pred             CCCeEEcCh-hhHHHHhcCC---CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCC
Q 018270           22 ADDVVVLTE-DNFEKEVGQD---RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGY   97 (358)
Q Consensus        22 ~~~v~~l~~-~~f~~~~~~~---~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (358)
                      ...+.+++. ++|.+.+.+.   .+++|+||++||++|+.+.|.+.+++..+   +.+.|++||+++. .++.+|+|.++
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~---~~vkF~kVd~d~~-~l~~~f~v~~v  136 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY---PAVKFCKIRASAT-GASDEFDTDAL  136 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC---CCeEEEEEeccch-hhHHhCCCCCC
Confidence            356788888 9999998433   48999999999999999999999999998   4699999999987 89999999999


Q ss_pred             CeEEEccCCCCCccccc-------CCCCHHHHHHHHhc
Q 018270           98 PTIQWFPKGSLEPKKYE-------GPRSTEALAEYVNN  128 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~-------g~~~~~~i~~~i~~  128 (358)
                      ||+++|.+|... ..+.       ...+.+.+..++.+
T Consensus       137 PTlllyk~G~~v-~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         137 PALLVYKGGELI-GNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             CEEEEEECCEEE-EEEechHHhcCCCCCHHHHHHHHHh
Confidence            999999987633 3332       24556666666654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.58  E-value=2.7e-13  Score=113.17  Aligned_cols=173  Identities=24%  Similarity=0.379  Sum_probs=141.8

Q ss_pred             hhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCC-CCHHHHHHHHhccCCCCcc
Q 018270           57 KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEALAEYVNNEGGTNVK  135 (358)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~-~~~~~i~~~i~~~~~~~~~  135 (358)
                      .....|.++|+.+.  +.+.|+.+.   +.++++.+++.. |++++|+++......|.|. .+.++|.+||....-+   
T Consensus         7 ~~~~~f~~~A~~~~--~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P---   77 (184)
T PF13848_consen    7 ELFEIFEEAAEKLK--GDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFP---   77 (184)
T ss_dssp             HHHHHHHHHHHHHT--TTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSST---
T ss_pred             HHHHHHHHHHHhCc--CCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccc---
Confidence            45678899999997  568999887   677999999999 9999999866666899997 8999999999987543   


Q ss_pred             ccCCCCCceEcCcccHHHHHhcCCCc-EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC
Q 018270          136 IAAVPSNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS  214 (358)
Q Consensus       136 ~~~~~~~v~~l~~~~f~~~~~~~~~~-v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~  214 (358)
                            .+.+++..++..+. ..+.+ +++.|..........+...++.+|+.++  +.+.|+.+|++..+.+++.+|++
T Consensus        78 ------~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~~f~~~d~~~~~~~~~~~~i~  148 (184)
T PF13848_consen   78 ------LVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK--GKINFVYVDADDFPRLLKYFGID  148 (184)
T ss_dssp             ------SCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT--TTSEEEEEETTTTHHHHHHTTTT
T ss_pred             ------cccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC--CeEEEEEeehHHhHHHHHHcCCC
Confidence                  37789999999988 55544 7788877667777888889999999886  56999999999888999999998


Q ss_pred             --cccEEEEEeCCC-cceeeecCCCCHHHHHHHHHH
Q 018270          215 --GFPTLKFFPKGN-KDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       215 --~~Pti~~~~~g~-~~~~~~~g~~~~~~l~~~i~~  247 (358)
                        .+|+++++.... .....+.|..+.+.+.+|+++
T Consensus       149 ~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  149 EDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             TSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             CccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence              799999998433 222334889999999999974

...

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.57  E-value=1.8e-14  Score=112.31  Aligned_cols=97  Identities=27%  Similarity=0.391  Sum_probs=79.9

Q ss_pred             HHHHHhcCC-CcEEEEEcCCCCcccchhhhhHH---HHHHHhcCCCCeEEEEEeCccc-------------HHHHHhcCC
Q 018270          151 FDEIVLDKS-KDVLVEFYAPWCGHCKNLAPTYE---KVAAAFTLEDDVVVANLDADKY-------------KDLAEKYGV  213 (358)
Q Consensus       151 f~~~~~~~~-~~v~v~f~a~~C~~c~~~~~~~~---~la~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~v  213 (358)
                      ++... ..+ ++++|.||++||++|+.+.|.+.   .+.+.+.  .++.++.+|.+.+             .+++.+|+|
T Consensus         6 ~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v   82 (125)
T cd02951           6 LAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV   82 (125)
T ss_pred             HHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence            34444 566 99999999999999999999875   5656554  4688899998754             689999999


Q ss_pred             CcccEEEEEeCC-CcceeeecCCCCHHHHHHHHHHhcC
Q 018270          214 SGFPTLKFFPKG-NKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       214 ~~~Pti~~~~~g-~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      .++||+++|.++ ++...++.|..+.+.+.++|+...+
T Consensus        83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            999999999987 6778889999999999999887543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.55  E-value=3.2e-14  Score=109.57  Aligned_cols=100  Identities=17%  Similarity=0.222  Sum_probs=80.0

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-----------hhHhh
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----------SLCSK   91 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------~l~~~   91 (358)
                      +.+..++.++|.+.+++++..+|+|+++|||+|+.+.|.+.++++..    ++.++.+|.+.+.           ++.+.
T Consensus         6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~   81 (122)
T TIGR01295         6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSR   81 (122)
T ss_pred             ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence            35677888999999998999999999999999999999999999873    3567777776432           45566


Q ss_pred             cC----ccCCCeEEEccCCCCCcccccC-CCCHHHHHHHHh
Q 018270           92 YG----VQGYPTIQWFPKGSLEPKKYEG-PRSTEALAEYVN  127 (358)
Q Consensus        92 ~~----i~~~P~l~~~~~~~~~~~~~~g-~~~~~~i~~~i~  127 (358)
                      |+    |.++||+++|++|... .+..| ..+.++|.+|+.
T Consensus        82 ~~i~~~i~~~PT~v~~k~Gk~v-~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        82 FGIPTSFMGTPTFVHITDGKQV-SVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             cCCcccCCCCCEEEEEeCCeEE-EEEeCCCCCHHHHHHHhh
Confidence            65    4569999999998755 56667 566889988864

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.54  E-value=5.8e-14  Score=102.89  Aligned_cols=91  Identities=37%  Similarity=0.796  Sum_probs=80.4

Q ss_pred             cHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcce
Q 018270          150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG  229 (358)
Q Consensus       150 ~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~  229 (358)
                      +|++.+ ..+++++|.||++||++|+.+.+.+.++++.   .+++.++.+|++.+.+++++|++.++|++++|.+|+ ..
T Consensus         2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~   76 (93)
T cd02947           2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EV   76 (93)
T ss_pred             chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH---CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EE
Confidence            566766 4448999999999999999999999999987   367999999999999999999999999999998874 56


Q ss_pred             eeecCCCCHHHHHHHH
Q 018270          230 EEYGGGRDLEDFVSFI  245 (358)
Q Consensus       230 ~~~~g~~~~~~l~~~i  245 (358)
                      ..+.|..+.+.|.+||
T Consensus        77 ~~~~g~~~~~~l~~~i   92 (93)
T cd02947          77 DRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEecCCCHHHHHHHh
Confidence            7788888889999887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.53  E-value=7.8e-14  Score=107.42  Aligned_cols=98  Identities=17%  Similarity=0.277  Sum_probs=75.9

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----------HHHHHhc
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------KDLAEKY  211 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------~~l~~~~  211 (358)
                      +..++..+|.+.+ ..++.++|.|+++|||+|+.+.|.+.++++..    ++.+..+|.+.+           .++.++|
T Consensus         8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295         8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF   82 (122)
T ss_pred             ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence            4567888898888 66788999999999999999999999999973    344666666532           2566776


Q ss_pred             CCC----cccEEEEEeCCCcceeeecC-CCCHHHHHHHHH
Q 018270          212 GVS----GFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFIN  246 (358)
Q Consensus       212 ~v~----~~Pti~~~~~g~~~~~~~~g-~~~~~~l~~~i~  246 (358)
                      ++.    ++||+++|++|+ ......| ..+.++|.+|+.
T Consensus        83 ~i~~~i~~~PT~v~~k~Gk-~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        83 GIPTSFMGTPTFVHITDGK-QVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CCcccCCCCCEEEEEeCCe-EEEEEeCCCCCHHHHHHHhh
Confidence            654    599999999985 4455666 567999998863

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.52  E-value=7.9e-14  Score=115.75  Aligned_cols=102  Identities=18%  Similarity=0.291  Sum_probs=82.2

Q ss_pred             CCCCceEcCcccHHHHHhcCC--CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          139 VPSNVVVLTADNFDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~--~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      ....+.+++..+|...+...+  .+|+|.||++||++|+.+.|.|+++|..|.   .+.|++||++..   ...|++.++
T Consensus        80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~---~~~~~i~~l  153 (192)
T cd02988          80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC---IPNYPDKNL  153 (192)
T ss_pred             CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HhhCCCCCC
Confidence            456788999999998775543  489999999999999999999999999983   689999999754   689999999


Q ss_pred             cEEEEEeCCCcceeeecC-------CCCHHHHHHHHHH
Q 018270          217 PTLKFFPKGNKDGEEYGG-------GRDLEDFVSFINE  247 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g-------~~~~~~l~~~i~~  247 (358)
                      ||+++|++|. ....+.|       ..+.++|-.++.+
T Consensus       154 PTlliyk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         154 PTILVYRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             CEEEEEECCE-EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            9999999885 3334433       3566777666653

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=7.5e-14  Score=115.24  Aligned_cols=101  Identities=29%  Similarity=0.606  Sum_probs=87.2

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        29 ~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      ++.+|+..+  .+.+.++|.|||+||+||+.+.|.|+.++.+|   +...|.+||+++-+..+..+||+..||+++|.+|
T Consensus         8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY---p~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng   84 (288)
T KOG0908|consen    8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY---PGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNG   84 (288)
T ss_pred             CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC---cccEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence            467788877  55679999999999999999999999999999   5578999999999999999999999999999998


Q ss_pred             CCCcccccCCCCHHHHHHHHhccCCCCc
Q 018270          107 SLEPKKYEGPRSTEALAEYVNNEGGTNV  134 (358)
Q Consensus       107 ~~~~~~~~g~~~~~~i~~~i~~~~~~~~  134 (358)
                      .++ ..+.| -++..+.+.+..+.....
T Consensus        85 ~ki-d~~qG-Ad~~gLe~kv~~~~stsa  110 (288)
T KOG0908|consen   85 VKI-DQIQG-ADASGLEEKVAKYASTSA  110 (288)
T ss_pred             eEe-eeecC-CCHHHHHHHHHHHhccCc
Confidence            755 77776 577888888877665444

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.50  E-value=1.6e-13  Score=103.11  Aligned_cols=88  Identities=19%  Similarity=0.329  Sum_probs=76.3

Q ss_pred             CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC--cccEEEEEeCCCcceeeecC-C
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFPTLKFFPKGNKDGEEYGG-G  235 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~--~~Pti~~~~~g~~~~~~~~g-~  235 (358)
                      ++++++.|+++||++|+.+.|.++++|+.++  +++.|+.+|+++++.+++.||+.  ++|++++++..+...+.+.+ .
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~   89 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK--GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE   89 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC--CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence            6899999999999999999999999999996  57999999999999999999999  99999999983222344444 4


Q ss_pred             CCHHHHHHHHHHh
Q 018270          236 RDLEDFVSFINEK  248 (358)
Q Consensus       236 ~~~~~l~~~i~~~  248 (358)
                      .+.+++.+|+.+.
T Consensus        90 ~~~~~l~~fi~~~  102 (103)
T cd02982          90 LTAESLEEFVEDF  102 (103)
T ss_pred             cCHHHHHHHHHhh
Confidence            5999999999764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.48  E-value=3.1e-13  Score=101.56  Aligned_cols=89  Identities=20%  Similarity=0.302  Sum_probs=76.7

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc--CCCeEEEccCCCCCccccc-C
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--GYPTIQWFPKGSLEPKKYE-G  115 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~P~l~~~~~~~~~~~~~~-g  115 (358)
                      .++++++.|+++||++|+.+.|.+.+++++++  +.+.|+.+|+++.+.+++.||+.  ++|++++++.++.....+. |
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~   88 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFK--GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEE   88 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhC--CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcc
Confidence            36899999999999999999999999999998  67999999999999999999999  9999999988321223444 4


Q ss_pred             CCCHHHHHHHHhcc
Q 018270          116 PRSTEALAEYVNNE  129 (358)
Q Consensus       116 ~~~~~~i~~~i~~~  129 (358)
                      ..+.+++.+|+++.
T Consensus        89 ~~~~~~l~~fi~~~  102 (103)
T cd02982          89 ELTAESLEEFVEDF  102 (103)
T ss_pred             ccCHHHHHHHHHhh
Confidence            45999999999753

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.48  E-value=2e-13  Score=113.29  Aligned_cols=100  Identities=20%  Similarity=0.328  Sum_probs=80.1

Q ss_pred             CCCeEEcChhhHHHHh-cC--CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           22 ADDVVVLTEDNFEKEV-GQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~--~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      ...+.+++.++|...+ ..  +.+++|+||++||++|+.+.|.|.+++..+   +.+.|++||+++.   +..|++.++|
T Consensus        81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~---~~vkFvkI~ad~~---~~~~~i~~lP  154 (192)
T cd02988          81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKF---PDTKFVKIISTQC---IPNYPDKNLP  154 (192)
T ss_pred             CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHC---CCCEEEEEEhHHh---HhhCCCCCCC
Confidence            4578899999998766 33  358999999999999999999999999998   4589999999753   5899999999


Q ss_pred             eEEEccCCCCCcccccC-------CCCHHHHHHHHhc
Q 018270           99 TIQWFPKGSLEPKKYEG-------PRSTEALAEYVNN  128 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g-------~~~~~~i~~~i~~  128 (358)
                      |+++|++|... .++.|       ..+.+++..++.+
T Consensus       155 Tlliyk~G~~v-~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         155 TILVYRNGDIV-KQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             EEEEEECCEEE-EEEeCchhhCCCCCCHHHHHHHHHh
Confidence            99999988643 44433       3456666666543

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.45  E-value=7.3e-13  Score=95.03  Aligned_cols=80  Identities=25%  Similarity=0.430  Sum_probs=70.3

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHH
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF  241 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l  241 (358)
                      .+..||++||++|+.+.|.++++++.+.  .++.+..||.+++++++++||+.++||+++  +|.   ..+.|..+.+++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l   74 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMG--DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEEL   74 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhc--CceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHH
Confidence            4678999999999999999999999884  458899999999999999999999999886  442   478899999999


Q ss_pred             HHHHHHh
Q 018270          242 VSFINEK  248 (358)
Q Consensus       242 ~~~i~~~  248 (358)
                      .+++++.
T Consensus        75 ~~~l~~~   81 (82)
T TIGR00411        75 VEAIKKR   81 (82)
T ss_pred             HHHHHhh
Confidence            9998763

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.45  E-value=5.3e-13  Score=113.91  Aligned_cols=93  Identities=25%  Similarity=0.378  Sum_probs=78.6

Q ss_pred             CCCcEEEEEcC---CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecC
Q 018270          158 KSKDVLVEFYA---PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG  234 (358)
Q Consensus       158 ~~~~v~v~f~a---~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g  234 (358)
                      .+...++.|++   +||++|+.+.|.++++++.+. .-.+.++.+|.+++++++++|+|.++||+++|++|.....++.|
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G   96 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTG   96 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence            34455777888   999999999999999999883 23467888888899999999999999999999988644468999


Q ss_pred             CCCHHHHHHHHHHhcCC
Q 018270          235 GRDLEDFVSFINEKCGT  251 (358)
Q Consensus       235 ~~~~~~l~~~i~~~~~~  251 (358)
                      ..+.+++.+||...++.
T Consensus        97 ~~~~~~l~~~i~~~~~~  113 (215)
T TIGR02187        97 IPAGYEFAALIEDIVRV  113 (215)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999988654

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.44  E-value=6.3e-13  Score=100.90  Aligned_cols=77  Identities=17%  Similarity=0.358  Sum_probs=67.0

Q ss_pred             ChhhHHHHhcC--CCcEEEEEEC-------CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------chhhHhhc
Q 018270           29 TEDNFEKEVGQ--DRGALVEFYA-------PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------HKSLCSKY   92 (358)
Q Consensus        29 ~~~~f~~~~~~--~~~~lv~fya-------~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~~~l~~~~   92 (358)
                      +.++|.+.+..  +++++|.|||       +||++|+.+.|.++++++.++  +.+.|+.||+++       +.++...+
T Consensus         8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdvd~~~~w~d~~~~~~~~~   85 (119)
T cd02952           8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP--EDCVFIYCDVGDRPYWRDPNNPFRTDP   85 (119)
T ss_pred             CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC--CCCEEEEEEcCCcccccCcchhhHhcc
Confidence            45778888854  6899999999       999999999999999999986  468999999976       45899999


Q ss_pred             Ccc-CCCeEEEccCCC
Q 018270           93 GVQ-GYPTIQWFPKGS  107 (358)
Q Consensus        93 ~i~-~~P~l~~~~~~~  107 (358)
                      +|. ++||+++|..++
T Consensus        86 ~I~~~iPT~~~~~~~~  101 (119)
T cd02952          86 KLTTGVPTLLRWKTPQ  101 (119)
T ss_pred             CcccCCCEEEEEcCCc
Confidence            998 999999997664

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.41  E-value=1.4e-12  Score=93.58  Aligned_cols=80  Identities=20%  Similarity=0.384  Sum_probs=70.2

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHH
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL  122 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i  122 (358)
                      .+..||++||++|+.+.|.++++++.++  ..+.+..||.+++++++++|++.++|++++  +|.   ..+.|..+.+++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l   74 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMG--DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEEL   74 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhc--CceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHH
Confidence            3678999999999999999999999886  558999999999999999999999999986  432   478899999999


Q ss_pred             HHHHhcc
Q 018270          123 AEYVNNE  129 (358)
Q Consensus       123 ~~~i~~~  129 (358)
                      .++++..
T Consensus        75 ~~~l~~~   81 (82)
T TIGR00411        75 VEAIKKR   81 (82)
T ss_pred             HHHHHhh
Confidence            9988753

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PTZ00062 glutaredoxin; Provisional

Probab=99.41  E-value=1.6e-12  Score=108.23  Aligned_cols=92  Identities=10%  Similarity=0.161  Sum_probs=77.7

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  226 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~  226 (358)
                      +.++|++.+.+..+.++++|+|+||++|+.+.|.+.++++.|   +++.|+.||++        |+|.++||+++|++|.
T Consensus         5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~---~~~~F~~V~~d--------~~V~~vPtfv~~~~g~   73 (204)
T PTZ00062          5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF---PSLEFYVVNLA--------DANNEYGVFEFYQNSQ   73 (204)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC---CCcEEEEEccc--------cCcccceEEEEEECCE
Confidence            456788887433578899999999999999999999999998   47999999987        9999999999999885


Q ss_pred             cceeeecCCCCHHHHHHHHHHhcCC
Q 018270          227 KDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       227 ~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                       ...++.| .++..+..++.+..++
T Consensus        74 -~i~r~~G-~~~~~~~~~~~~~~~~   96 (204)
T PTZ00062         74 -LINSLEG-CNTSTLVSFIRGWAQK   96 (204)
T ss_pred             -EEeeeeC-CCHHHHHHHHHHHcCC
Confidence             4556665 4699999999887764

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.41  E-value=8.7e-13  Score=100.13  Aligned_cols=78  Identities=21%  Similarity=0.442  Sum_probs=66.3

Q ss_pred             CcccHHHHHhc-CCCcEEEEEcC-------CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------cHHHHHhc
Q 018270          147 TADNFDEIVLD-KSKDVLVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAEKY  211 (358)
Q Consensus       147 ~~~~f~~~~~~-~~~~v~v~f~a-------~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------~~~l~~~~  211 (358)
                      +.++|.+.+.. ++++++|.|||       +||++|+.+.|.+++++..+.  +++.|++||+++       +.++..+|
T Consensus         8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdvd~~~~w~d~~~~~~~~~   85 (119)
T cd02952           8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP--EDCVFIYCDVGDRPYWRDPNNPFRTDP   85 (119)
T ss_pred             CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC--CCCEEEEEEcCCcccccCcchhhHhcc
Confidence            45677777743 36899999999       999999999999999999985  368899999875       46899999


Q ss_pred             CCC-cccEEEEEeCCC
Q 018270          212 GVS-GFPTLKFFPKGN  226 (358)
Q Consensus       212 ~v~-~~Pti~~~~~g~  226 (358)
                      +|. ++||+++|..|+
T Consensus        86 ~I~~~iPT~~~~~~~~  101 (119)
T cd02952          86 KLTTGVPTLLRWKTPQ  101 (119)
T ss_pred             CcccCCCEEEEEcCCc
Confidence            998 999999997664

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.41  E-value=5.3e-13  Score=102.11  Aligned_cols=96  Identities=14%  Similarity=0.338  Sum_probs=66.9

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-hhHhhcCccC--CCeEEEccCCC
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-SLCSKYGVQG--YPTIQWFPKGS  107 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~--~P~l~~~~~~~  107 (358)
                      +.+..+..++++++|.|||+||++|+.+.|.+.+.........++..  +|.+.+. .....|++.+  +||+++|+++|
T Consensus        10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~--v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~G   87 (117)
T cd02959          10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVM--VNLEDDEEPKDEEFSPDGGYIPRILFLDPSG   87 (117)
T ss_pred             HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEE--EEecCCCCchhhhcccCCCccceEEEECCCC
Confidence            44555567899999999999999999999999998775542234444  4544443 3557899986  99999998666


Q ss_pred             CCcc---cccCCCCHHHHHHHHhc
Q 018270          108 LEPK---KYEGPRSTEALAEYVNN  128 (358)
Q Consensus       108 ~~~~---~~~g~~~~~~i~~~i~~  128 (358)
                      ....   ...|..+.+.+...+..
T Consensus        88 k~~~~~~~~~~~~~~~~f~~~~~~  111 (117)
T cd02959          88 DVHPEIINKKGNPNYKYFYSSAAQ  111 (117)
T ss_pred             CCchhhccCCCCccccccCCCHHH
Confidence            5433   44566665555554443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.41  E-value=1.3e-11  Score=120.27  Aligned_cols=186  Identities=16%  Similarity=0.237  Sum_probs=144.6

Q ss_pred             CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc-CCCCCcccccCCCCH
Q 018270           41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP-KGSLEPKKYEGPRST  119 (358)
Q Consensus        41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~-~~~~~~~~~~g~~~~  119 (358)
                      ...++.|+.+.|..|.++...++++++. .  +.+.+-..|..++.+++++|+++..|++.+++ .+....++|.|...-
T Consensus       367 ~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s--~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G  443 (555)
T TIGR03143       367 PVTLLLFLDGSNEKSAELQSFLGEFASL-S--EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG  443 (555)
T ss_pred             CEEEEEEECCCchhhHHHHHHHHHHHhc-C--CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence            3467788888999999999999999964 3  66888888988899999999999999999995 443445889888777


Q ss_pred             HHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcE-EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEE
Q 018270          120 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN  198 (358)
Q Consensus       120 ~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v-~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~  198 (358)
                      .++..||....+..-.       -..++.+..+.+- .=++++ +-.|.+++|++|......+++++...   +++..-.
T Consensus       444 ~Ef~s~i~~i~~~~~~-------~~~l~~~~~~~i~-~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~---~~i~~~~  512 (555)
T TIGR03143       444 HELNSFILALYNAAGP-------GQPLGEELLEKIK-KITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN---PNVEAEM  512 (555)
T ss_pred             HhHHHHHHHHHHhcCC-------CCCCCHHHHHHHH-hcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC---CCceEEE
Confidence            7788877765432211       1234555555544 334554 56678999999999999999998875   4788888


Q ss_pred             EeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       199 vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      +|..+.++++++|+|.++|++++=  |.   ..+.|..+.+++.+||
T Consensus       513 i~~~~~~~~~~~~~v~~vP~~~i~--~~---~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       513 IDVSHFPDLKDEYGIMSVPAIVVD--DQ---QVYFGKKTIEEMLELI  554 (555)
T ss_pred             EECcccHHHHHhCCceecCEEEEC--CE---EEEeeCCCHHHHHHhh
Confidence            999999999999999999998773  32   4467888999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.40  E-value=6.9e-13  Score=101.50  Aligned_cols=93  Identities=23%  Similarity=0.447  Sum_probs=67.8

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc--ccEEEEEeCCCcce---ee
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--FPTLKFFPKGNKDG---EE  231 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~Pti~~~~~g~~~~---~~  231 (358)
                      ..+++++|.|||+||++|+.+.|.+.+.+.......++..+.+|.+.. ...+.|++.+  +||+++|.++|+..   ..
T Consensus        17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~   95 (117)
T cd02959          17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSGDVHPEIIN   95 (117)
T ss_pred             HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCCCCchhhcc
Confidence            678999999999999999999999999877654344566655554432 3567899986  99999997554533   25


Q ss_pred             ecCCCCHHHHHHHHHHhcC
Q 018270          232 YGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       232 ~~g~~~~~~l~~~i~~~~~  250 (358)
                      ..|..+.+.+.+++....+
T Consensus        96 ~~~~~~~~~f~~~~~~~~~  114 (117)
T cd02959          96 KKGNPNYKYFYSSAAQVTE  114 (117)
T ss_pred             CCCCccccccCCCHHHHHh
Confidence            5667777776666655443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.39  E-value=6.3e-12  Score=103.83  Aligned_cols=104  Identities=27%  Similarity=0.458  Sum_probs=83.0

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------   83 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------   83 (358)
                      +..++.+.+....-.+++++|+||++||++|+...+.+.++++++++ ..+.++.++++                     
T Consensus        46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~  124 (173)
T PRK03147         46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDETELAVKNFVNRYGLTFPVAI  124 (173)
T ss_pred             eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence            34455554443334578999999999999999999999999999874 24777777764                     


Q ss_pred             -cchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           84 -EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        84 -~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                       .+..+++.|++.++|+++++++++.....+.|..+.+++.+++++.
T Consensus       125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence             3457789999999999999988887766889999999999988753

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.37  E-value=4.4e-12  Score=119.54  Aligned_cols=90  Identities=23%  Similarity=0.334  Sum_probs=75.3

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEE----------------------------EeCccchhhH
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGK----------------------------VDCDEHKSLC   89 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~----------------------------vd~~~~~~l~   89 (358)
                      +++++++|.|||+||++|+...|.+.+++++++. +.+.++.                            ++++.+.+++
T Consensus        54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la  132 (521)
T PRK14018         54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA  132 (521)
T ss_pred             cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence            5789999999999999999999999999998863 2344433                            3445567789


Q ss_pred             hhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           90 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      +.|+|.++|+++++.+++.....+.|..+.+++.++|+.
T Consensus       133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN  171 (521)
T ss_pred             HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            999999999998887777676888999999999999984

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.37  E-value=3.3e-12  Score=98.13  Aligned_cols=80  Identities=21%  Similarity=0.334  Sum_probs=66.6

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHH-H--HHHHHHhhcCCceEEEEEeCccchhhHhh--------cCccCC
Q 018270           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPE-Y--EKLGASFKKAKSVLIGKVDCDEHKSLCSK--------YGVQGY   97 (358)
Q Consensus        29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~-~--~~~~~~~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~~   97 (358)
                      +++.+.++.+++++++|.|+++||++|+.+.+. |  .++++.++  .++.++.+|.++.+++++.        |++.++
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~--~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN--ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh--CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence            567788888999999999999999999999874 3  46777665  5688999999988877653        589999


Q ss_pred             CeEEEccCCCCCc
Q 018270           98 PTIQWFPKGSLEP  110 (358)
Q Consensus        98 P~l~~~~~~~~~~  110 (358)
                      |+++++++++...
T Consensus        82 Pt~vfl~~~G~~~   94 (124)
T cd02955          82 PLNVFLTPDLKPF   94 (124)
T ss_pred             CEEEEECCCCCEE
Confidence            9999999887653

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.34  E-value=2e-11  Score=97.53  Aligned_cols=89  Identities=19%  Similarity=0.287  Sum_probs=66.3

Q ss_pred             HhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc------------hhhH-hhc---CccCCCe
Q 018270           36 EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH------------KSLC-SKY---GVQGYPT   99 (358)
Q Consensus        36 ~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~P~   99 (358)
                      .+..+++.+|+||++||++|++..|.+.+++++++    +.+..|+.+..            .... ..|   ++.++|+
T Consensus        46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT  121 (153)
T TIGR02738        46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA  121 (153)
T ss_pred             hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence            34556778999999999999999999999999873    33444444321            2232 345   7899999


Q ss_pred             EEEccCCCCC-cccccCCCCHHHHHHHHhc
Q 018270          100 IQWFPKGSLE-PKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       100 l~~~~~~~~~-~~~~~g~~~~~~i~~~i~~  128 (358)
                      .+++++.+.. ...+.|..+.+++.+.+.+
T Consensus       122 t~LID~~G~~i~~~~~G~~s~~~l~~~I~~  151 (153)
T TIGR02738       122 TFLVNVNTRKAYPVLQGAVDEAELANRMDE  151 (153)
T ss_pred             EEEEeCCCCEEEEEeecccCHHHHHHHHHH
Confidence            9999886543 3367899999998887765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=1.2e-12  Score=120.54  Aligned_cols=109  Identities=32%  Similarity=0.654  Sum_probs=88.5

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC-CCCeEEEEEeCc--ccHHHHHhcCCCc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDAD--KYKDLAEKYGVSG  215 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~-~~~v~~~~vd~~--~~~~l~~~~~v~~  215 (358)
                      ..+.+++|+..+|...+..+.+..+|.||++|||+|+.++|.|+++|+.... .+-+.++.|||.  .|..+|+.|+|.+
T Consensus        37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~  116 (606)
T KOG1731|consen   37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG  116 (606)
T ss_pred             CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence            4488999999999999987778999999999999999999999999998753 245788899987  6788999999999


Q ss_pred             ccEEEEEeCCCcc---eeeecCCCCHHHHHHHHHH
Q 018270          216 FPTLKFFPKGNKD---GEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       216 ~Pti~~~~~g~~~---~~~~~g~~~~~~l~~~i~~  247 (358)
                      ||++.+|+.+...   ...+.|.....++.+.+.+
T Consensus       117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~  151 (606)
T KOG1731|consen  117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIR  151 (606)
T ss_pred             CceeeecCCccccCcCCCcccCCcchhhHHHHHHH
Confidence            9999999877432   3445555555555555543

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.32  E-value=4.4e-12  Score=96.80  Aligned_cols=87  Identities=32%  Similarity=0.507  Sum_probs=64.7

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHH---HHHhhcCCceEEEEEeCccc--------------------hhhHhhcCc
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKL---GASFKKAKSVLIGKVDCDEH--------------------KSLCSKYGV   94 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~---~~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i   94 (358)
                      .+++++++.|+++||++|+.+.+.+...   ...++  ..+.++.++++..                    .++++.+||
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK--DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV   80 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH--CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh--cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence            4678999999999999999999999854   44443  3577777777643                    358899999


Q ss_pred             cCCCeEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270           95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      +++|++++++.+|.....+.|..+.++|.+++
T Consensus        81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            99999999987666656789999999998875

...

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.32  E-value=1.1e-11  Score=120.09  Aligned_cols=102  Identities=21%  Similarity=0.434  Sum_probs=82.3

Q ss_pred             eEEc-ChhhHHHHh----cCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCcc----chhhHhhc
Q 018270           25 VVVL-TEDNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDE----HKSLCSKY   92 (358)
Q Consensus        25 v~~l-~~~~f~~~~----~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~   92 (358)
                      +..+ +.+++++.+    .++++++|+|||+||++|+.+.+..   .++.+.++   ++.++++|.++    +.+++++|
T Consensus       454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~  530 (571)
T PRK00293        454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHY  530 (571)
T ss_pred             ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHc
Confidence            4445 356676665    4578999999999999999999875   67777773   48899999975    36789999


Q ss_pred             CccCCCeEEEccCCCCC--cccccCCCCHHHHHHHHhcc
Q 018270           93 GVQGYPTIQWFPKGSLE--PKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        93 ~i~~~P~l~~~~~~~~~--~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++.++|++++|+++++.  ..++.|..+.+++.+++++.
T Consensus       531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence            99999999999866544  35788999999999999864

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.28  E-value=5.2e-11  Score=99.17  Aligned_cols=88  Identities=16%  Similarity=0.295  Sum_probs=70.2

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-----------------------hhHhhcCc
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----------------------SLCSKYGV   94 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i   94 (358)
                      ..+++++|+||++||++|++..|.+.++.+.     .+.++.|+.++++                       .+++.|++
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv  140 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV  140 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence            4689999999999999999999999888652     3556666653322                       34557899


Q ss_pred             cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      .++|+.+++++++.....+.|..+.+++.++++...
T Consensus       141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            999999999877777788889999999988887654

>PHA02125 thioredoxin-like protein

Probab=99.28  E-value=1.7e-11  Score=86.05  Aligned_cols=70  Identities=24%  Similarity=0.490  Sum_probs=55.0

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC-CCHHHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDF  241 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l  241 (358)
                      ++.||++||++|+.+.|.+.+++        +.+++||.+++.+++++|+|.++||++   .| .....+.|. .+..+|
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g-~~~~~~~G~~~~~~~l   69 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NT-STLDRFTGVPRNVAEL   69 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CC-EEEEEEeCCCCcHHHH
Confidence            68999999999999999987652        457899999999999999999999987   33 333456663 455555


Q ss_pred             HHH
Q 018270          242 VSF  244 (358)
Q Consensus       242 ~~~  244 (358)
                      .+-
T Consensus        70 ~~~   72 (75)
T PHA02125         70 KEK   72 (75)
T ss_pred             HHH
Confidence            543

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=99.28  E-value=1.4e-10  Score=85.96  Aligned_cols=106  Identities=26%  Similarity=0.481  Sum_probs=86.8

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHH-HHhcCCCCeEEEEEeCc-----ccHHHHHhcCCC-
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDDVVVANLDAD-----KYKDLAEKYGVS-  214 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la-~~~~~~~~v~~~~vd~~-----~~~~l~~~~~v~-  214 (358)
                      ....|+.-+|++++ .+.+.++|.|-..+  |..+-+..|.++| +..+..+++.++.|.+.     +|.+|+++|++. 
T Consensus         5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            35779999999999 78899999998766  7788899999999 66666789999999987     578999999995 


Q ss_pred             -cccEEEEEeCCCcceeee--cCCCCHHHHHHHHHHhcC
Q 018270          215 -GFPTLKFFPKGNKDGEEY--GGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       215 -~~Pti~~~~~g~~~~~~~--~g~~~~~~l~~~i~~~~~  250 (358)
                       .||.+++|..+...++.|  .|+.+.++|..|++++.+
T Consensus        82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence             599999999777789988  899999999999998755

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.27  E-value=9.4e-12  Score=94.94  Aligned_cols=87  Identities=31%  Similarity=0.524  Sum_probs=64.2

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHH---HHhcCCCCeEEEEEeCccc--------------------HHHHHhcCC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVA---AAFTLEDDVVVANLDADKY--------------------KDLAEKYGV  213 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la---~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~v  213 (358)
                      ..++++++.|++|||++|+.+.+.+.+..   ..+.  .++.++.++++..                    .++++.|||
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK--DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV   80 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH--CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh--cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence            46789999999999999999999888643   3332  3577777777643                    358999999


Q ss_pred             CcccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       214 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      +++||+++++..|+....+.|..+.++|.+++
T Consensus        81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            99999999986556677889999999998875

...

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.26  E-value=2.6e-11  Score=117.60  Aligned_cols=99  Identities=27%  Similarity=0.517  Sum_probs=79.8

Q ss_pred             CcccHHHHHh---cCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcc----cHHHHHhcCCCcc
Q 018270          147 TADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGF  216 (358)
Q Consensus       147 ~~~~f~~~~~---~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~  216 (358)
                      +.+++++.+.   ..+++++|+|||+||++|+.+.+..   .++.+.++   ++.++++|+++    +.+++++|++.++
T Consensus       459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~  535 (571)
T PRK00293        459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGL  535 (571)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence            3466666653   3468999999999999999998864   56777663   58899999874    3689999999999


Q ss_pred             cEEEEEeCCCcc--eeeecCCCCHHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKD--GEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~--~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ||+++|+++++.  ..++.|..+.+++.+++++.
T Consensus       536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence            999999855454  46788999999999999863

>TIGR02740 TraF-like TraF-like protein

Probab=99.25  E-value=6e-11  Score=104.15  Aligned_cols=91  Identities=16%  Similarity=0.178  Sum_probs=72.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------cHHHHHhcCCCcccEEEEEeC-CCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------YKDLAEKYGVSGFPTLKFFPK-GNK  227 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------~~~l~~~~~v~~~Pti~~~~~-g~~  227 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+.  -.+..+.+|.+.         +..++++|||.++|+++++.+ |+.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            57899999999999999999999999999984  234445554421         357899999999999999997 444


Q ss_pred             ceeeecCCCCHHHHHHHHHHhcC
Q 018270          228 DGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       228 ~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      ......|..+.++|.+.+.....
T Consensus       243 v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       243 FTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHhc
Confidence            33445688999999999876544

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.24  E-value=5.8e-11  Score=94.85  Aligned_cols=89  Identities=18%  Similarity=0.273  Sum_probs=65.9

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------cHHHH-Hhc---CCCcccEEEEEe
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------YKDLA-EKY---GVSGFPTLKFFP  223 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------~~~l~-~~~---~v~~~Pti~~~~  223 (358)
                      .++..+|+||++||++|++..|.+.++++.+.  -.+..+.+|-..          ..... ..|   ++.++||.++++
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID  126 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN  126 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence            45667999999999999999999999999873  234444444321          12333 445   789999999998


Q ss_pred             CCCcc-eeeecCCCCHHHHHHHHHHh
Q 018270          224 KGNKD-GEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       224 ~g~~~-~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ..+.. ...+.|..+.+++.+.+.+.
T Consensus       127 ~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       127 VNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCCEEEEEeecccCHHHHHHHHHHh
Confidence            75443 44678999999998887653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.22  E-value=6.6e-11  Score=90.92  Aligned_cols=80  Identities=20%  Similarity=0.374  Sum_probs=60.9

Q ss_pred             cccHHHHHhcCCCcEEEEEcCCCCcccchhhh-hHH--HHHHHhcCCCCeEEEEEeCcccHHHHHh--------cCCCcc
Q 018270          148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP-TYE--KVAAAFTLEDDVVVANLDADKYKDLAEK--------YGVSGF  216 (358)
Q Consensus       148 ~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~-~~~--~la~~~~~~~~v~~~~vd~~~~~~l~~~--------~~v~~~  216 (358)
                      .+.+.... ..+++++|.|+++||++|+.+.+ .|.  ++++.+  +.+++++++|.++.+++++.        ||+.++
T Consensus         5 ~eal~~Ak-~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l--~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           5 EEAFEKAR-REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL--NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             HHHHHHHH-HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH--hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence            34455544 78899999999999999999976 333  455554  24799999999987776653        589999


Q ss_pred             cEEEEEeCCCccee
Q 018270          217 PTLKFFPKGNKDGE  230 (358)
Q Consensus       217 Pti~~~~~g~~~~~  230 (358)
                      |+++++.+.++...
T Consensus        82 Pt~vfl~~~G~~~~   95 (124)
T cd02955          82 PLNVFLTPDLKPFF   95 (124)
T ss_pred             CEEEEECCCCCEEe
Confidence            99999987766443

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.22  E-value=6.3e-11  Score=111.78  Aligned_cols=89  Identities=21%  Similarity=0.334  Sum_probs=74.3

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE----------------------------eCcccHHHH
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL----------------------------DADKYKDLA  208 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v----------------------------d~~~~~~l~  208 (358)
                      ..+++++|.|||+||++|+.+.|.+.++++.++. .++.++.|                            +++.+..++
T Consensus        54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la  132 (521)
T PRK14018         54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA  132 (521)
T ss_pred             cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence            4789999999999999999999999999998863 23444333                            334556799


Q ss_pred             HhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          209 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       209 ~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                      +.|+|.++||.+++.++++....+.|..+.++|.++|+
T Consensus       133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence            99999999999888766677788999999999999998

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.22  E-value=5.2e-11  Score=83.71  Aligned_cols=72  Identities=15%  Similarity=0.263  Sum_probs=57.0

Q ss_pred             EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC-CCHHHHH
Q 018270          164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV  242 (358)
Q Consensus       164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~  242 (358)
                      |.||++||++|+.+.|.++++++++.  ..+.+.++|   +.+.+.+||+.+.||+++  +|. ..  +.|. .+.+.+.
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~--~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~-~~--~~G~~~~~~~l~   72 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELG--IDAEFEKVT---DMNEILEAGVTATPGVAV--DGE-LV--IMGKIPSKEEIK   72 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcC--CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE-EE--EEeccCCHHHHH
Confidence            78999999999999999999999985  457887777   233478899999999999  553 22  6774 4557777


Q ss_pred             HHH
Q 018270          243 SFI  245 (358)
Q Consensus       243 ~~i  245 (358)
                      +++
T Consensus        73 ~~l   75 (76)
T TIGR00412        73 EIL   75 (76)
T ss_pred             HHh
Confidence            765

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PHA02125 thioredoxin-like protein

Probab=99.21  E-value=5.8e-11  Score=83.35  Aligned_cols=70  Identities=29%  Similarity=0.497  Sum_probs=54.0

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCC-CCHHHH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEAL  122 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~-~~~~~i  122 (358)
                      ++.||++||++|+.+.|.|+++.        +.++.||++++.+++++|+|.++||++   .+. ...++.|. .+..++
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~~~l   69 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNVAEL   69 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcHHHH
Confidence            78999999999999999997542        457899999999999999999999998   222 22456663 344555


Q ss_pred             HHH
Q 018270          123 AEY  125 (358)
Q Consensus       123 ~~~  125 (358)
                      .+-
T Consensus        70 ~~~   72 (75)
T PHA02125         70 KEK   72 (75)
T ss_pred             HHH
Confidence            543

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.20  E-value=7.1e-11  Score=93.22  Aligned_cols=70  Identities=19%  Similarity=0.352  Sum_probs=56.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC------CCeEEEEEeCccc-------------------------HH
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE------DDVVVANLDADKY-------------------------KD  206 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~-------------------------~~  206 (358)
                      .+++++|.|||+||++|+++.|.+.++.+.+..+      .++.++.|+.+.+                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            6799999999999999999999999998877532      2577777776532                         15


Q ss_pred             HHHhcCCCcccEEEEEeCCCc
Q 018270          207 LAEKYGVSGFPTLKFFPKGNK  227 (358)
Q Consensus       207 l~~~~~v~~~Pti~~~~~g~~  227 (358)
                      ++++|++.++|+.+++...|+
T Consensus       104 l~~~y~v~~iPt~vlId~~G~  124 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGD  124 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCc
Confidence            788899999999999986654

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.20  E-value=7.2e-11  Score=91.65  Aligned_cols=93  Identities=25%  Similarity=0.408  Sum_probs=71.5

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe---------------------Cccc
Q 018270           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD---------------------CDEH   85 (358)
Q Consensus        27 ~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd---------------------~~~~   85 (358)
                      +++.+.+......+++++|.||++||++|+.+.|.+.++++.+.   .+.+ .+|                     ++.+
T Consensus         7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (123)
T cd03011           7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSV-ALRSGDDGAVARFMQKKGYGFPVINDPD   82 (123)
T ss_pred             cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEE-EccCCCHHHHHHHHHHcCCCccEEECCC
Confidence            34445555555566999999999999999999999999987742   2222 222                     2345


Q ss_pred             hhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHH
Q 018270           86 KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE  124 (358)
Q Consensus        86 ~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~  124 (358)
                      .++++.|+|.++|+++++.+++ ....+.|..+.++|.+
T Consensus        83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence            6799999999999999999888 6678889999888865

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.18  E-value=8.4e-11  Score=91.81  Aligned_cols=80  Identities=23%  Similarity=0.385  Sum_probs=64.2

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-----------------------CccchhhHhhcCcc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-----------------------CDEHKSLCSKYGVQ   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i~   95 (358)
                      .+++++|+||++||++|+...|.+.++.+.++    +.++.|+                       ++.+..+++.|++.
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~   99 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY   99 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence            57899999999999999999999999987752    4444444                       34556788899999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHH
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEAL  122 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i  122 (358)
                      ++|+.+++++++.....+.|..+.+.+
T Consensus       100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         100 GVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CCCeEEEECCCceEEEEEeccCChHhc
Confidence            999888888777666788898876654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.18  E-value=9e-11  Score=82.47  Aligned_cols=73  Identities=19%  Similarity=0.279  Sum_probs=58.0

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCC-CCHHHH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEAL  122 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~-~~~~~i  122 (358)
                      -|.||++||++|+.+.|.++++++++.  ..+.+..+|   +.+.+.+|++.++|++++  +|. .  .+.|. .+.+++
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~--~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~-~--~~~G~~~~~~~l   71 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELG--IDAEFEKVT---DMNEILEAGVTATPGVAV--DGE-L--VIMGKIPSKEEI   71 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcC--CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE-E--EEEeccCCHHHH
Confidence            378999999999999999999999986  458888888   344578899999999999  443 2  26674 455777


Q ss_pred             HHHH
Q 018270          123 AEYV  126 (358)
Q Consensus       123 ~~~i  126 (358)
                      .+++
T Consensus        72 ~~~l   75 (76)
T TIGR00412        72 KEIL   75 (76)
T ss_pred             HHHh
Confidence            7765

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR02740 TraF-like TraF-like protein

Probab=99.18  E-value=8.5e-11  Score=103.20  Aligned_cols=91  Identities=15%  Similarity=0.182  Sum_probs=71.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------chhhHhhcCccCCCeEEEccC-CCC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------HKSLCSKYGVQGYPTIQWFPK-GSL  108 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~P~l~~~~~-~~~  108 (358)
                      .+++++|+||++||++|+.+.|.+.+++++++  -.|..+.+|...         +..+++++||.++|+++++++ ++.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            46899999999999999999999999999884  234444444321         356889999999999999988 443


Q ss_pred             CcccccCCCCHHHHHHHHhccCC
Q 018270          109 EPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       109 ~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      ......|..+.++|.+.+.....
T Consensus       243 v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       243 FTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHhc
Confidence            33345689999999998876543

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.17  E-value=4.5e-10  Score=92.71  Aligned_cols=103  Identities=19%  Similarity=0.402  Sum_probs=81.2

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------  203 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------  203 (358)
                      +..++++.+.--. -.+++++|.||++||++|+...|.+.++++.+.. .++.++.++++.                   
T Consensus        46 ~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~  123 (173)
T PRK03147         46 LTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDETELAVKNFVNRYGLTFPVA  123 (173)
T ss_pred             eecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence            3345555443322 3578899999999999999999999999999964 346666776542                   


Q ss_pred             ---cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          204 ---YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       204 ---~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                         +..+++.|++.++|+++++.++++....+.|..+.+++.+++.+
T Consensus       124 ~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        124 IDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK  170 (173)
T ss_pred             ECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence               35788999999999999998777777788999999999999875

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.17  E-value=1.5e-10  Score=90.89  Aligned_cols=70  Identities=20%  Similarity=0.449  Sum_probs=56.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCccc------------------------HHHHHhcC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY------------------------KDLAEKYG  212 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~  212 (358)
                      .+++++|.||++||++|+.+.|.+.++.+.++.. .++.++.++.+..                        ..++++|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            5789999999999999999999999999988643 2555555554422                        35788999


Q ss_pred             CCcccEEEEEeCCCc
Q 018270          213 VSGFPTLKFFPKGNK  227 (358)
Q Consensus       213 v~~~Pti~~~~~g~~  227 (358)
                      |.++|++++++.+++
T Consensus        97 v~~~P~~~lid~~G~  111 (131)
T cd03009          97 IEGIPTLIILDADGE  111 (131)
T ss_pred             CCCCCEEEEECCCCC
Confidence            999999999986654

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.17  E-value=1.7e-10  Score=85.19  Aligned_cols=69  Identities=33%  Similarity=0.667  Sum_probs=56.5

Q ss_pred             CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-------------------------HHHHHhcCC
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------------KDLAEKYGV  213 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~~v  213 (358)
                      ++++++.||++||++|+...|.+.++.+.++.+.++.++.|..++.                         ..+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            5789999999999999999999999999997556777777777643                         268899999


Q ss_pred             CcccEEEEEeCCCc
Q 018270          214 SGFPTLKFFPKGNK  227 (358)
Q Consensus       214 ~~~Pti~~~~~g~~  227 (358)
                      .++|+++++.++|+
T Consensus        81 ~~iP~~~lld~~G~   94 (95)
T PF13905_consen   81 NGIPTLVLLDPDGK   94 (95)
T ss_dssp             TSSSEEEEEETTSB
T ss_pred             CcCCEEEEECCCCC
Confidence            99999999987653

...

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.16  E-value=1.6e-10  Score=85.31  Aligned_cols=69  Identities=33%  Similarity=0.606  Sum_probs=56.1

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-------------------------hhHhhcCc
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-------------------------SLCSKYGV   94 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~~~i   94 (358)
                      +++++|+||++||++|+...|.+.++.+.+++.+++.++.|..+++.                         .+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            58999999999999999999999999999985567888888886542                         36678899


Q ss_pred             cCCCeEEEccCCCC
Q 018270           95 QGYPTIQWFPKGSL  108 (358)
Q Consensus        95 ~~~P~l~~~~~~~~  108 (358)
                      .++|++++++++|.
T Consensus        81 ~~iP~~~lld~~G~   94 (95)
T PF13905_consen   81 NGIPTLVLLDPDGK   94 (95)
T ss_dssp             TSSSEEEEEETTSB
T ss_pred             CcCCEEEEECCCCC
Confidence            99999999987763

...

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.16  E-value=2.4e-10  Score=88.65  Aligned_cols=93  Identities=28%  Similarity=0.391  Sum_probs=70.8

Q ss_pred             EcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC---------------------cc
Q 018270          145 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------DK  203 (358)
Q Consensus       145 ~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~---------------------~~  203 (358)
                      .++++.+.... ..+++++|.||++||++|+.+.|.+.++++.+    .+..+.+|-                     +.
T Consensus         7 ~~~g~~~~~~~-~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~   81 (123)
T cd03011           7 TLDGEQFDLES-LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGYGFPVINDP   81 (123)
T ss_pred             cCCCCEeeHHH-hCCCEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence            34444554444 35689999999999999999999999998874    233333332                     24


Q ss_pred             cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHH
Q 018270          204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS  243 (358)
Q Consensus       204 ~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~  243 (358)
                      +..++++|+|.++|+++++.+++ ....+.|..+.+++.+
T Consensus        82 ~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          82 DGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             CcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence            45799999999999999999887 6777888888888764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.15  E-value=2.5e-10  Score=95.13  Aligned_cols=87  Identities=20%  Similarity=0.301  Sum_probs=68.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-----------------------HHHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----------------------DLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~v~  214 (358)
                      .+++++|.||++||++|+...|.+.++++.     ++.++.|+.+++.                       .+...|++.
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~  141 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY  141 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence            688999999999999999999999988652     3556666644321                       345578999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++|+.+++...++....+.|..+.+++.++|...+
T Consensus       142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            99988888766677788899999999988887654

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.15  E-value=2.2e-10  Score=89.99  Aligned_cols=71  Identities=20%  Similarity=0.418  Sum_probs=57.2

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccc------------------------hhhHhhcC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEH------------------------KSLCSKYG   93 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~   93 (358)
                      .+++++|+||++||++|+...|.+.++.+++.+. ..+.++.|+.+..                        ..+++.|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            5789999999999999999999999999888643 2455555555432                        35778999


Q ss_pred             ccCCCeEEEccCCCCC
Q 018270           94 VQGYPTIQWFPKGSLE  109 (358)
Q Consensus        94 i~~~P~l~~~~~~~~~  109 (358)
                      |.++|+++++++++..
T Consensus        97 v~~~P~~~lid~~G~i  112 (131)
T cd03009          97 IEGIPTLIILDADGEV  112 (131)
T ss_pred             CCCCCEEEEECCCCCE
Confidence            9999999999877654

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.14  E-value=1.5e-10  Score=79.51  Aligned_cols=57  Identities=26%  Similarity=0.539  Sum_probs=51.4

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      -++.|+++||++|+.+.+.+++++...   +++.+..+|.+++++++++||+.++||+++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN---PNISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC---CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            367899999999999999999998764   468999999999999999999999999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.14  E-value=2.1e-10  Score=90.51  Aligned_cols=71  Identities=18%  Similarity=0.281  Sum_probs=57.5

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC------CceEEEEEeCccc-------------------------hh
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA------KSVLIGKVDCDEH-------------------------KS   87 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~------~~v~~~~vd~~~~-------------------------~~   87 (358)
                      ++++++|+|||+||++|++..|.+.++.+.+++.      ..+.++.|+.+++                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            5799999999999999999999999998877532      2577777776532                         14


Q ss_pred             hHhhcCccCCCeEEEccCCCCC
Q 018270           88 LCSKYGVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        88 l~~~~~i~~~P~l~~~~~~~~~  109 (358)
                      +++.|++.++|++++++++|..
T Consensus       104 l~~~y~v~~iPt~vlId~~G~V  125 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDV  125 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcE
Confidence            6778899999999999987754

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.13  E-value=2.1e-10  Score=94.56  Aligned_cols=88  Identities=24%  Similarity=0.339  Sum_probs=69.8

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-----------------------CccchhhHhhcCc
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-----------------------CDEHKSLCSKYGV   94 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i   94 (358)
                      .++++++|+||++||++|+...|.+.++.+.     .+.++.|+                       ++.+.++++.|++
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v  135 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV  135 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence            4679999999999999999999999888753     23344443                       3344567788999


Q ss_pred             cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      .++|+.+++++++.....+.|..+.+++.+++++..
T Consensus       136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence            999998888877766677889999999999998764

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.13  E-value=2.6e-10  Score=89.02  Aligned_cols=80  Identities=21%  Similarity=0.311  Sum_probs=63.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe-----------------------CcccHHHHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-----------------------ADKYKDLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~v~  214 (358)
                      .+++++|.||++||++|+...|.+.++++.+    ++.++.|+                       ++....+++.|++.
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~   99 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY   99 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence            5789999999999999999999999998875    24444444                       33455788899999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHH
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDF  241 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l  241 (358)
                      ++|+.+++.++++....+.|..+.+.|
T Consensus       100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         100 GVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CCCeEEEECCCceEEEEEeccCChHhc
Confidence            999888877666677788898877654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.13  E-value=2.1e-10  Score=90.12  Aligned_cols=70  Identities=23%  Similarity=0.474  Sum_probs=55.9

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCccc-------------------------HHHHHhc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY-------------------------KDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~~  211 (358)
                      .+++++|.||++||++|+...|.+.++++.++.+ .++.++.|+.+..                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            5789999999999999999999999999988744 3555555554432                         2466789


Q ss_pred             CCCcccEEEEEeCCCc
Q 018270          212 GVSGFPTLKFFPKGNK  227 (358)
Q Consensus       212 ~v~~~Pti~~~~~g~~  227 (358)
                      +|.++|+++++..+++
T Consensus        96 ~v~~iPt~~lid~~G~  111 (132)
T cd02964          96 KVEGIPTLVVLKPDGD  111 (132)
T ss_pred             CCCCCCEEEEECCCCC
Confidence            9999999999976654

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.12  E-value=5.3e-10  Score=85.43  Aligned_cols=92  Identities=17%  Similarity=0.191  Sum_probs=76.8

Q ss_pred             HhcCCCcEEEEEECCCChhhhhhhHH-H--HHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccCCCeEEEccC-CCCC
Q 018270           36 EVGQDRGALVEFYAPWCGHCKKLAPE-Y--EKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPK-GSLE  109 (358)
Q Consensus        36 ~~~~~~~~lv~fya~~c~~C~~~~~~-~--~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~~-~~~~  109 (358)
                      +.+++++++|+|+++||++|+.+... |  .++.+.++  ....+..+|.+  +...++..|++.++|+++++.+ ++..
T Consensus        13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~   90 (114)
T cd02958          13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV   90 (114)
T ss_pred             HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence            34778999999999999999999774 4  56777776  45777788886  5678999999999999999988 6766


Q ss_pred             cccccCCCCHHHHHHHHhcc
Q 018270          110 PKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       110 ~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .....|..+++++...+.+.
T Consensus        91 l~~~~G~~~~~~f~~~L~~~  110 (114)
T cd02958          91 LKVWSGNITPEDLLSQLIEF  110 (114)
T ss_pred             eEEEcCCCCHHHHHHHHHHH
Confidence            67889999999999888764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.12  E-value=3.2e-10  Score=93.41  Aligned_cols=89  Identities=20%  Similarity=0.278  Sum_probs=69.5

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC-----------------------cccHHHHHhcCC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------DKYKDLAEKYGV  213 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~v  213 (358)
                      ..+++++|.||++||++|+.+.|.++++++.     ++.++.|+.                       |.+..+.+.|++
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v  135 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV  135 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence            3678999999999999999999999988753     244444443                       223356778999


Q ss_pred             CcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       214 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      .++|+.+++.++++....+.|..+.+++.+++++.++
T Consensus       136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            9999888776656677788899999999999988653

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.11  E-value=2.6e-10  Score=86.91  Aligned_cols=76  Identities=30%  Similarity=0.592  Sum_probs=65.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-----------------------hhhHhhcCcc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----------------------KSLCSKYGVQ   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i~   95 (358)
                      .+++++|.||++||++|+...+.+.++.+.+. ...+.++.|+++.+                       ..+++.|++.
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR   96 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence            47899999999999999999999999999986 35689999999875                       7789999999


Q ss_pred             CCCeEEEccCCCCCcccccC
Q 018270           96 GYPTIQWFPKGSLEPKKYEG  115 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g  115 (358)
                      ++|+++++++++.....+.|
T Consensus        97 ~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          97 GLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             ccceEEEECCCCcEEEEecC
Confidence            99999999887765555544

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.10  E-value=2.3e-09  Score=82.29  Aligned_cols=106  Identities=14%  Similarity=0.248  Sum_probs=85.7

Q ss_pred             EcCcccHHHHHhcCCCcEEEEEcC--CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          145 VLTADNFDEIVLDKSKDVLVEFYA--PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       145 ~l~~~~f~~~~~~~~~~v~v~f~a--~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      .++..+++.++ ......+++|-.  ..++.+....-++.+++++|. ..++.+++||++.+++++.+|||.++||+++|
T Consensus        21 ~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~-~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F   98 (132)
T PRK11509         21 PVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-DYTWQVAIADLEQSEAIGDRFGVFRFPATLVF   98 (132)
T ss_pred             ccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhc-CCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence            46778888888 444444444432  236777778889999999994 34599999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      ++|+ ......|.++.+++.+||.+.++...
T Consensus        99 kdGk-~v~~i~G~~~k~~l~~~I~~~L~~~~  128 (132)
T PRK11509         99 TGGN-YRGVLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_pred             ECCE-EEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence            9984 56678899999999999999877653

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.10  E-value=3.6e-10  Score=88.81  Aligned_cols=71  Identities=23%  Similarity=0.397  Sum_probs=57.2

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccc-------------------------hhhHhhc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEH-------------------------KSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~~   92 (358)
                      .+++++|.||++||++|+...|.+.++++.+++. ..+.+..|+.+..                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            4799999999999999999999999999988753 3566666665543                         2456779


Q ss_pred             CccCCCeEEEccCCCCC
Q 018270           93 GVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        93 ~i~~~P~l~~~~~~~~~  109 (358)
                      +|.++|+++++++++..
T Consensus        96 ~v~~iPt~~lid~~G~i  112 (132)
T cd02964          96 KVEGIPTLVVLKPDGDV  112 (132)
T ss_pred             CCCCCCEEEEECCCCCE
Confidence            99999999999877644

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.10  E-value=2.6e-10  Score=78.20  Aligned_cols=57  Identities=23%  Similarity=0.413  Sum_probs=51.6

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      -++.|+++||++|+.+.+.++++++..   +.+.+..+|.++++++++++++.++|++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN---PNISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC---CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            367899999999999999999998754   569999999999999999999999999876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.08  E-value=8.3e-09  Score=99.92  Aligned_cols=183  Identities=13%  Similarity=0.140  Sum_probs=134.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS  118 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~  118 (358)
                      -.+++-+.++.+.|+.|.++...++++++.-   +++.+-..+..           ...|++.++.++....++|.|...
T Consensus        17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s---~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~   82 (517)
T PRK15317         17 LERPIELVASLDDSEKSAELKELLEEIASLS---DKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPM   82 (517)
T ss_pred             CCCCEEEEEEeCCCchHHHHHHHHHHHHHhC---CceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCc
Confidence            3456656666668999999999999998864   45655332211           358999998766555689988888


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEE
Q 018270          119 TEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN  198 (358)
Q Consensus       119 ~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~  198 (358)
                      -.++..||....+..-.       -..|+.+..+.+-.-.+...+-.|+++.|++|......+.+++...   +++..-.
T Consensus        83 g~Ef~s~i~~i~~~~~~-------~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~---~~i~~~~  152 (517)
T PRK15317         83 GHEFTSLVLALLQVGGH-------PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN---PNITHTM  152 (517)
T ss_pred             cHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC---CCceEEE
Confidence            78888887765432111       1234555545444223444588999999999999999999998853   5888999


Q ss_pred             EeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       199 vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +|...+++++++|++.++|++++  +|.   ..+.|..+.+++.+.+.+..+
T Consensus       153 id~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~g~~~~~~~~~~~~~~~~  199 (517)
T PRK15317        153 IDGALFQDEVEARNIMAVPTVFL--NGE---EFGQGRMTLEEILAKLDTGAA  199 (517)
T ss_pred             EEchhCHhHHHhcCCcccCEEEE--CCc---EEEecCCCHHHHHHHHhcccc
Confidence            99999999999999999999865  332   457899999999999876544

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.08  E-value=6.6e-10  Score=103.98  Aligned_cols=103  Identities=20%  Similarity=0.392  Sum_probs=83.2

Q ss_pred             EEcChh-hHHHHhcCCC--cEEEEEECCCChhhhhhhHHHH-HHHHHhhcCCceEEEEEeCccc----hhhHhhcCccCC
Q 018270           26 VVLTED-NFEKEVGQDR--GALVEFYAPWCGHCKKLAPEYE-KLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGY   97 (358)
Q Consensus        26 ~~l~~~-~f~~~~~~~~--~~lv~fya~~c~~C~~~~~~~~-~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~   97 (358)
                      ..++.. ..++.+.+++  |++|+|||+||-.|+.+.+..- +.....+ ..++.+.++|.+++    .++-++||+-+.
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~  535 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGV  535 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence            555555 7788886666  9999999999999999998753 3322222 26799999999865    567899999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |++++|++++..+....|..+.+.+.+++++.
T Consensus       536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            99999998777767799999999999999764

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.08  E-value=1.3e-09  Score=88.61  Aligned_cols=84  Identities=14%  Similarity=0.232  Sum_probs=66.3

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-------------hhhHhhcCc--cCCCeEEEccCCCC
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------------KSLCSKYGV--QGYPTIQWFPKGSL  108 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~P~l~~~~~~~~  108 (358)
                      +|.||++||++|++..|.+.+++++++    +.+..|+.+..             ..+.+.|++  .++|+.++++.++.
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence            788999999999999999999999984    44444544422             236678885  69999999988886


Q ss_pred             Cc-ccccCCCCHHHHHHHHhccCC
Q 018270          109 EP-KKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       109 ~~-~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      .. ..+.|..+.+++.+.+.+...
T Consensus       149 i~~~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        149 EALPLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHh
Confidence            63 368899999999888877654

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.07  E-value=9.6e-10  Score=79.54  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=62.7

Q ss_pred             CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCH
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  238 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~  238 (358)
                      +..-+..|+++||++|+...+.+++++..+   +++.+..+|.++.++++++|||.++||+++  +|.   ..+.|..+.
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~---~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~---~~~~G~~~~   83 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLN---PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE---LFGFGRMTL   83 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHC---CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE---EEEeCCCCH
Confidence            344588899999999999999999999876   479999999999999999999999999975  452   344576666


Q ss_pred             HHHH
Q 018270          239 EDFV  242 (358)
Q Consensus       239 ~~l~  242 (358)
                      ++++
T Consensus        84 ~e~~   87 (89)
T cd03026          84 EEIL   87 (89)
T ss_pred             HHHh
Confidence            6654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.6e-09  Score=81.40  Aligned_cols=126  Identities=15%  Similarity=0.201  Sum_probs=87.0

Q ss_pred             ChhHHHHHHHHHHHHHhhhccC-CCeEEcCh-hhHHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCce
Q 018270            1 MERYQIWLALGTLTLFFVSALA-DDVVVLTE-DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSV   75 (358)
Q Consensus         1 M~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~-~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v   75 (358)
                      |+|.++++++++++++++..+. .....++- ++..++...++..++.|-++.|++|.++...+   .++.+.+.  +.+
T Consensus         1 ~mRvl~i~Lliis~fl~a~~s~~ek~s~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk--~hf   78 (182)
T COG2143           1 VMRVLLIVLLIISLFLSACKSNNEKRSNIDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK--EHF   78 (182)
T ss_pred             CcchHHHHHHHHHHHHHHHhCCchhhhhhhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh--hCe
Confidence            4554444444444444333322 22222221 33444557789999999999999999998877   45555565  446


Q ss_pred             EEEEEeCcc----------------chhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           76 LIGKVDCDE----------------HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        76 ~~~~vd~~~----------------~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      .++.+|...                ..++++.|+++++|++++|+..|......+|...++++...+.-
T Consensus        79 ~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY  147 (182)
T COG2143          79 SAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKY  147 (182)
T ss_pred             EEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence            666666532                24899999999999999999888777788999999988866553

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.05  E-value=9.2e-10  Score=83.83  Aligned_cols=76  Identities=34%  Similarity=0.647  Sum_probs=65.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----------------------HHHHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v~  214 (358)
                      .++++++.||++||++|+...+.+.++...+. +.++.++.|+.+..                       ..+.+.|++.
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR   96 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence            47899999999999999999999999999986 45788888888875                       6789999999


Q ss_pred             cccEEEEEeCCCcceeeecC
Q 018270          215 GFPTLKFFPKGNKDGEEYGG  234 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g  234 (358)
                      ++|+++++.++++....+.|
T Consensus        97 ~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          97 GLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             ccceEEEECCCCcEEEEecC
Confidence            99999999877666666554

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.05  E-value=1.1e-09  Score=84.12  Aligned_cols=82  Identities=13%  Similarity=0.145  Sum_probs=56.4

Q ss_pred             HHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270           33 FEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        33 f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~  109 (358)
                      +..+.+++++++|.|+++||++|+.+....   .++.+..+  .++.++.++.+....-....+ .++||++|+++++..
T Consensus        16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~--~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~v   92 (130)
T cd02960          16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ--EDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTV   92 (130)
T ss_pred             HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH--hCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCC
Confidence            344447899999999999999999999875   45555554  346666676652211112344 689999999888766


Q ss_pred             cccccCCC
Q 018270          110 PKKYEGPR  117 (358)
Q Consensus       110 ~~~~~g~~  117 (358)
                      ..+..|..
T Consensus        93 i~~i~Gy~  100 (130)
T cd02960          93 RADITGRY  100 (130)
T ss_pred             cccccccc
Confidence            55555543

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=1.9e-09  Score=111.60  Aligned_cols=92  Identities=21%  Similarity=0.348  Sum_probs=76.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC---------------------------cccHHHHHh
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------------DKYKDLAEK  210 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~  210 (358)
                      .+++++|+|||+||++|+...|.++++++.|+. .++.++.|..                           +....+.++
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~  497 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE  497 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence            689999999999999999999999999999963 3577776631                           123467789


Q ss_pred             cCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          211 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       211 ~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      |+|.++|+++++...++...++.|....+.+.+++...+.
T Consensus       498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence            9999999999997666677788999999999999998754

>smart00594 UAS UAS domain

Probab=99.01  E-value=3.3e-09  Score=81.97  Aligned_cols=89  Identities=16%  Similarity=0.197  Sum_probs=71.8

Q ss_pred             hcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccCCCeEEEccCCC----
Q 018270           37 VGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGS----  107 (358)
Q Consensus        37 ~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~~~~----  107 (358)
                      .+++|+++|+|+++||++|+.+....   .++.+.++  .++.+..+|.+  +..+++.+|++.++|++.++.+.+    
T Consensus        24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~  101 (122)
T smart00594       24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV  101 (122)
T ss_pred             HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence            37789999999999999999998764   56667776  45777777765  557799999999999999997665    


Q ss_pred             -CCcccccCCCCHHHHHHHHh
Q 018270          108 -LEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus       108 -~~~~~~~g~~~~~~i~~~i~  127 (358)
                       ....+..|..+++++..+++
T Consensus       102 ~~~~~~~~G~~~~~~l~~~l~  122 (122)
T smart00594      102 IEWVGVVEGEISPEELMTFLE  122 (122)
T ss_pred             EEEeccccCCCCHHHHHHhhC
Confidence             12457789999999988763

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=8.4e-10  Score=89.55  Aligned_cols=88  Identities=22%  Similarity=0.449  Sum_probs=74.9

Q ss_pred             cCCCeEEc-ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc--
Q 018270           21 LADDVVVL-TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--   95 (358)
Q Consensus        21 ~~~~v~~l-~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--   95 (358)
                      ....+.-+ +.+.+++.+  +....|+|.||+.|.+.|+.+.|.|.++..+|+. +.+.||+||...-++.+.+|+|.  
T Consensus       122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris~s  200 (265)
T KOG0914|consen  122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRISLS  200 (265)
T ss_pred             CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeeccC
Confidence            45567777 556666666  4556799999999999999999999999999975 57999999999999999999986  


Q ss_pred             ----CCCeEEEccCCCCC
Q 018270           96 ----GYPTIQWFPKGSLE  109 (358)
Q Consensus        96 ----~~P~l~~~~~~~~~  109 (358)
                          ..||+++|.+|.+.
T Consensus       201 ~~srQLPT~ilFq~gkE~  218 (265)
T KOG0914|consen  201 PGSRQLPTYILFQKGKEV  218 (265)
T ss_pred             cccccCCeEEEEccchhh
Confidence                77999999988754

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.99  E-value=3.4e-09  Score=86.17  Aligned_cols=85  Identities=15%  Similarity=0.239  Sum_probs=66.7

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------cHHHHHhcCC--CcccEEEEEeCCCc
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------YKDLAEKYGV--SGFPTLKFFPKGNK  227 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------~~~l~~~~~v--~~~Pti~~~~~g~~  227 (358)
                      +|.||++||++|++..|.+.++++.+.    +.+.-|+.+.             ...+.+.|++  .++|+.++++..++
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence            778999999999999999999999983    4444444331             2346778995  69999999987776


Q ss_pred             ce-eeecCCCCHHHHHHHHHHhcCC
Q 018270          228 DG-EEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       228 ~~-~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      .. ..+.|..+.+++.+.|.+.+..
T Consensus       149 i~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        149 EALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHhh
Confidence            54 4689999999999988877654

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.98  E-value=1.9e-10  Score=94.60  Aligned_cols=109  Identities=30%  Similarity=0.571  Sum_probs=95.2

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      ..++.++.+|+..++   ...+++.|++|||+.|+...|.|+..|.--. +-.+.++.||.+.++.|.-+|-+...|||+
T Consensus        24 s~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~-dL~v~va~VDvt~npgLsGRF~vtaLptIY   99 (248)
T KOG0913|consen   24 SKLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSL-DLGVKVAKVDVTTNPGLSGRFLVTALPTIY   99 (248)
T ss_pred             ceeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccC-CCceeEEEEEEEeccccceeeEEEecceEE
Confidence            367889999999987   5678999999999999999999999988654 357999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCC
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG  255 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~  255 (358)
                      -..+|  +-.+|.|.|+..++++|+...--...++
T Consensus       100 HvkDG--eFrrysgaRdk~dfisf~~~r~w~~i~p  132 (248)
T KOG0913|consen  100 HVKDG--EFRRYSGARDKNDFISFEEHREWQSIDP  132 (248)
T ss_pred             Eeecc--ccccccCcccchhHHHHHHhhhhhccCC
Confidence            99988  6688999999999999998765544433

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.97  E-value=1.6e-09  Score=77.52  Aligned_cols=71  Identities=30%  Similarity=0.544  Sum_probs=55.2

Q ss_pred             hHHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccC
Q 018270           32 NFEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPK  105 (358)
Q Consensus        32 ~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~  105 (358)
                      .+.++.+++++++|+|+++||++|+.+...+   .++.+.+.  .++.++.+|.+.........+ .++|+++++++
T Consensus         9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp   82 (82)
T PF13899_consen    9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP   82 (82)
T ss_dssp             HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred             HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence            3445558899999999999999999999988   56666565  668999999987665433222 77999999864

...

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.95  E-value=5.3e-09  Score=80.32  Aligned_cols=107  Identities=12%  Similarity=0.159  Sum_probs=88.9

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECC--CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAP--WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~--~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ....++..+++..+......+|.|-.+  -++.+....-.+.+++++|.+ .++.+++||.+++++++.+|||.++||++
T Consensus        18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl   96 (132)
T PRK11509         18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATL   96 (132)
T ss_pred             CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            455667788999887766666666543  267788888899999999952 35999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +|++|... ....|.++.+++.++|.+....
T Consensus        97 ~FkdGk~v-~~i~G~~~k~~l~~~I~~~L~~  126 (132)
T PRK11509         97 VFTGGNYR-GVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_pred             EEECCEEE-EEEeCcCCHHHHHHHHHHHhcC
Confidence            99998754 7888999999999999987653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.95  E-value=6.5e-08  Score=93.65  Aligned_cols=182  Identities=14%  Similarity=0.205  Sum_probs=131.8

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCH
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST  119 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~  119 (358)
                      .+++-+.++.+.|+.|.++...++++++.-   +++.+-..+.+          ....|++.++.++....++|.|...-
T Consensus        18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s---~ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~g   84 (515)
T TIGR03140        18 ENPVTLVLSAGSHEKSKELLELLDEIASLS---DKISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPGG   84 (515)
T ss_pred             CCCEEEEEEeCCCchhHHHHHHHHHHHHhC---CCeEEEEecCC----------cCCCCeEEEecCCcccceEEEecCCc
Confidence            455655555557999999999999988864   45665433321          23569999987665556899888877


Q ss_pred             HHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE
Q 018270          120 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL  199 (358)
Q Consensus       120 ~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v  199 (358)
                      .++..||....+..-.       -..|+.+..+.+-.-.+...+-.|.++.|++|......+.+++...   +++..-.+
T Consensus        85 ~Ef~s~i~~i~~~~~~-------~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~---p~i~~~~i  154 (515)
T TIGR03140        85 HEFTSLVLAILQVGGH-------GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN---PNISHTMI  154 (515)
T ss_pred             HHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC---CCceEEEE
Confidence            8888887764432111       1235555555544223445588999999999999988998888864   57888889


Q ss_pred             eCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       200 d~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      |....++++++|++.++|++++  +|.   ..+.|..+.+++.+.+.+..
T Consensus       155 d~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~g~~~~~~~~~~l~~~~  199 (515)
T TIGR03140       155 DGALFQDEVEALGIQGVPAVFL--NGE---EFHNGRMDLAELLEKLEETA  199 (515)
T ss_pred             EchhCHHHHHhcCCcccCEEEE--CCc---EEEecCCCHHHHHHHHhhcc
Confidence            9999999999999999999876  332   45789999999988887653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.94  E-value=4.2e-09  Score=76.20  Aligned_cols=76  Identities=12%  Similarity=0.149  Sum_probs=62.1

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCH
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST  119 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~  119 (358)
                      +..-+..|+++||++|....+.+.++++.+   +++.+..+|.++.++++++|||.++|++++  +|.   ..+.|..+.
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~---~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~---~~~~G~~~~   83 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLN---PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE---LFGFGRMTL   83 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHC---CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE---EEEeCCCCH
Confidence            344678899999999999999999999876   569999999999999999999999999975  443   345676665


Q ss_pred             HHHH
Q 018270          120 EALA  123 (358)
Q Consensus       120 ~~i~  123 (358)
                      +++.
T Consensus        84 ~e~~   87 (89)
T cd03026          84 EEIL   87 (89)
T ss_pred             HHHh
Confidence            5543

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.94  E-value=6.7e-09  Score=85.00  Aligned_cols=84  Identities=11%  Similarity=0.043  Sum_probs=64.4

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEE------EEEeCcc---------------------------
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI------GKVDCDE---------------------------   84 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~------~~vd~~~---------------------------   84 (358)
                      -.+++.+|.|||.||++|+..+|.+.++.++     .+.+      ..||.++                           
T Consensus        57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll  131 (184)
T TIGR01626        57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL  131 (184)
T ss_pred             cCCCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence            3489999999999999999999999999653     1222      3333332                           


Q ss_pred             --chhhHhhcCccCCCeE-EEccCCCCCcccccCCCCHHHHHHHH
Q 018270           85 --HKSLCSKYGVQGYPTI-QWFPKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus        85 --~~~l~~~~~i~~~P~l-~~~~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                        +..+...|++.+.|+. ++++..|.....+.|..+.+++.+.+
T Consensus       132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence              2345678899999888 78888888778889999888877643

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.94  E-value=1.2e-08  Score=77.93  Aligned_cols=91  Identities=16%  Similarity=0.182  Sum_probs=74.1

Q ss_pred             cCCCcEEEEEcCCCCcccchhhh-hHH--HHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeC-CCccee
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAP-TYE--KVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPK-GNKDGE  230 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~-~~~--~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~-g~~~~~  230 (358)
                      ..+++++|.|+++||++|+.+.. .|.  ++.+.+.  .++++..+|.+  +...++..|++.++|+++++.+ .+....
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~   92 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK   92 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence            56899999999999999999855 343  3444443  46888888887  5668999999999999999987 566778


Q ss_pred             eecCCCCHHHHHHHHHHhc
Q 018270          231 EYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       231 ~~~g~~~~~~l~~~i~~~~  249 (358)
                      +..|..+++++...|++..
T Consensus        93 ~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          93 VWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             EEcCCCCHHHHHHHHHHHH
Confidence            8999999999999887653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.94  E-value=4e-09  Score=80.55  Aligned_cols=59  Identities=27%  Similarity=0.405  Sum_probs=40.9

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE-e--CcccHHHHHhcCCCcccE
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL-D--ADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v-d--~~~~~~l~~~~~v~~~Pt  218 (358)
                      .+++++|.||++||++|+...|.++++++.+..  ++.++.+ +  .++...+++++++..+|+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~   81 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPY   81 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcE
Confidence            478999999999999999999999999988753  3444444 2  223334455555544554

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.91  E-value=5.2e-09  Score=81.52  Aligned_cols=76  Identities=17%  Similarity=0.304  Sum_probs=59.3

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------------cchhhHhh
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------------EHKSLCSK   91 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~   91 (358)
                      ++++++|+||++||++|....|.+.++.+++++ ..+.++.|+..                           .+..+++.
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~  100 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA  100 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence            568999999999999999999999999999975 35777766541                           12245667


Q ss_pred             cCccCCCeEEEccCCCCCcccccC
Q 018270           92 YGVQGYPTIQWFPKGSLEPKKYEG  115 (358)
Q Consensus        92 ~~i~~~P~l~~~~~~~~~~~~~~g  115 (358)
                      |++.++|+.+++++++.....+.|
T Consensus       101 ~~v~~~P~~~vid~~G~v~~~~~G  124 (126)
T cd03012         101 YGNQYWPALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             hCCCcCCeEEEECCCCcEEEEEec
Confidence            888899999999877765555554

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.90  E-value=8.6e-09  Score=80.27  Aligned_cols=77  Identities=19%  Similarity=0.317  Sum_probs=60.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----c----------------------cHHHHHh
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----K----------------------YKDLAEK  210 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----~----------------------~~~l~~~  210 (358)
                      .+++++|.||++||++|....|.+.++.+.++. .++.++.|..+     .                      ...+.+.
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~  100 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA  100 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence            568999999999999999999999999999974 45777666431     1                      1257778


Q ss_pred             cCCCcccEEEEEeCCCcceeeecCC
Q 018270          211 YGVSGFPTLKFFPKGNKDGEEYGGG  235 (358)
Q Consensus       211 ~~v~~~Pti~~~~~g~~~~~~~~g~  235 (358)
                      |++.++|+.+++..+++....+.|+
T Consensus       101 ~~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         101 YGNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             hCCCcCCeEEEECCCCcEEEEEecC
Confidence            9999999999997666666666653

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.90  E-value=4.7e-09  Score=108.76  Aligned_cols=90  Identities=19%  Similarity=0.364  Sum_probs=74.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC---------------------------ccchhhHhh
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC---------------------------DEHKSLCSK   91 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~   91 (358)
                      ++++++|+|||+||++|+...|.+.++.+++++. .+.++.|.+                           +.+.++.++
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~  497 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE  497 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence            5799999999999999999999999999999753 366666632                           223457789


Q ss_pred             cCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           92 YGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        92 ~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |+|.++|+++++++++....++.|....+.+.++++..
T Consensus       498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~  535 (1057)
T PLN02919        498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA  535 (1057)
T ss_pred             cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence            99999999999987776767888999999999888764

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.87  E-value=6.6e-10  Score=91.52  Aligned_cols=103  Identities=24%  Similarity=0.538  Sum_probs=91.0

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ...+..++++|..+.++  .-|+++|+|||||.|+...|+|+..+.--.+ -.|.++.||...++.+.-+|-+...|+|+
T Consensus        23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIY   99 (248)
T KOG0913|consen   23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIY   99 (248)
T ss_pred             cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEE
Confidence            34788999999999884  3599999999999999999999999876443 47999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      -..+|.-  -+|+|.|+.+++..|+..+
T Consensus       100 HvkDGeF--rrysgaRdk~dfisf~~~r  125 (248)
T KOG0913|consen  100 HVKDGEF--RRYSGARDKNDFISFEEHR  125 (248)
T ss_pred             Eeecccc--ccccCcccchhHHHHHHhh
Confidence            9988854  5899999999999999754

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.85  E-value=5.7e-09  Score=97.81  Aligned_cols=103  Identities=25%  Similarity=0.460  Sum_probs=79.7

Q ss_pred             EcCcc-cHHHHHh-cCCCcEEEEEcCCCCcccchhhhh-HHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcCCCccc
Q 018270          145 VLTAD-NFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPT-YEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFP  217 (358)
Q Consensus       145 ~l~~~-~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~-~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~v~~~P  217 (358)
                      .++.. ..++.+. +++++|+++|||+||..||.+.+. +.+....++ -.+++..+.|.+++    .++.++||+-+.|
T Consensus       458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P  536 (569)
T COG4232         458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGVP  536 (569)
T ss_pred             ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence            34433 5666652 233599999999999999999773 333333333 35899999998854    4789999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++++|+.+++++....|-.+++.+.+++++.
T Consensus       537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         537 TYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             EEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            9999997777777789999999999999764

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.85  E-value=4.9e-09  Score=91.38  Aligned_cols=152  Identities=18%  Similarity=0.243  Sum_probs=95.7

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchh------hhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNL------APTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS  214 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~------~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~  214 (358)
                      ..+..||.+||.+.+ .+....+|.|+.|-- ..+..      ...+-+|+.+...+.++.|+.||...+..+++++|+.
T Consensus        34 DRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~  111 (383)
T PF01216_consen   34 DRVIDLNEKNFKRAL-KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE  111 (383)
T ss_dssp             --CEEE-TTTHHHHH-HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred             cceEEcchhHHHHHH-HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence            458899999999988 566667777777752 22322      2334566666555678999999999999999999999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCCCCCccccccchhhH--HHHHHHHHhcchhhHHHHHHHHH
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASL--DALVKEFVAASGDEKKAVFSKIE  292 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~  292 (358)
                      ..+++++|.+|  ..+.|.|.++++.|++||.+.........++.....+.. .+  +..+..|+++.++   +.+++.+
T Consensus       112 E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe-~ied~~klIGyFk~~~s---~~yk~Fe  185 (383)
T PF01216_consen  112 EEGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFE-RIEDDIKLIGYFKSEDS---EHYKEFE  185 (383)
T ss_dssp             STTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHH-H--SS-EEEEE-SSTTS---HHHHHHH
T ss_pred             ccCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhh-hcccceeEEEEeCCCCc---HHHHHHH
Confidence            99999999998  679999999999999999999886654332222221111 11  1112234444332   3566667


Q ss_pred             HHHhhhhc
Q 018270          293 RGVEVLEG  300 (358)
Q Consensus       293 ~~~~~~~~  300 (358)
                      +++..+.+
T Consensus       186 eAAe~F~p  193 (383)
T PF01216_consen  186 EAAEHFQP  193 (383)
T ss_dssp             HHHHHCTT
T ss_pred             HHHHhhcC
Confidence            77777653

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.84  E-value=6.2e-09  Score=79.53  Aligned_cols=60  Identities=25%  Similarity=0.449  Sum_probs=44.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEE---eCccchhhHhhcCccCCCeE
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV---DCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~v---d~~~~~~l~~~~~i~~~P~l  100 (358)
                      ++++++|.||++||++|+...|.+.++++.++  +.+.++.+   +.++..++++++++..+|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~--~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~   82 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA--DWLDVVLASDGEKAEHQRFLKKHGLEAFPYV   82 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhc--CCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence            47899999999999999999999999988875  33544444   22234456667777666654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.82  E-value=2.4e-08  Score=79.92  Aligned_cols=79  Identities=29%  Similarity=0.485  Sum_probs=62.9

Q ss_pred             CCCcEEEEEcCC-CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---------------------HHHHHhcCCC-
Q 018270          158 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVS-  214 (358)
Q Consensus       158 ~~~~v~v~f~a~-~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~v~-  214 (358)
                      .+++++|.||++ ||++|+...|.+.++++.++.. ++.++.|..+.+                     ..+.+.|++. 
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  105 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI  105 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence            688999999999 9999999999999999987643 455555544422                     2789999998 


Q ss_pred             --------cccEEEEEeCCCcceeeecCCCC
Q 018270          215 --------GFPTLKFFPKGNKDGEEYGGGRD  237 (358)
Q Consensus       215 --------~~Pti~~~~~g~~~~~~~~g~~~  237 (358)
                              ++|+++++..+++....+.|..+
T Consensus       106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence                    99999999888876666666544

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.80  E-value=3.1e-08  Score=83.21  Aligned_cols=59  Identities=14%  Similarity=0.271  Sum_probs=46.0

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------ccHHHHHhcCCCcccE
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------KYKDLAEKYGVSGFPT  218 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~v~~~Pt  218 (358)
                      .+++++|.||++||++|+...|.+.++.+.++. .++.++.|+++           +...+++++++. ||.
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-fpv  107 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-YNF  107 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-CceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-cee
Confidence            578999999999999999999999999999964 35777778653           233566676663 553

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.78  E-value=1.9e-08  Score=77.28  Aligned_cols=82  Identities=16%  Similarity=0.259  Sum_probs=53.6

Q ss_pred             cHHHHH---hcCCCcEEEEEcCCCCcccchhhhhHH---HHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEe
Q 018270          150 NFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTYE---KVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  223 (358)
Q Consensus       150 ~f~~~~---~~~~~~v~v~f~a~~C~~c~~~~~~~~---~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~  223 (358)
                      +|++.+   ...+++++|.|++.||++|+.+...+-   ++.+..  +.+++.+.++.+....-....+ .++||++|+.
T Consensus        11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l--~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld   87 (130)
T cd02960          11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLA--QEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVD   87 (130)
T ss_pred             hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHH--HhCeEEEEEEeccCCCCcCccC-cccCeEEEEC
Confidence            444433   367899999999999999999976432   233333  2357777777653211111234 5799999998


Q ss_pred             CCCcceeeecC
Q 018270          224 KGNKDGEEYGG  234 (358)
Q Consensus       224 ~g~~~~~~~~g  234 (358)
                      +.++...+..|
T Consensus        88 ~~g~vi~~i~G   98 (130)
T cd02960          88 PSLTVRADITG   98 (130)
T ss_pred             CCCCCcccccc
Confidence            77766655555

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.78  E-value=1.7e-07  Score=69.70  Aligned_cols=109  Identities=23%  Similarity=0.435  Sum_probs=86.4

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHH-HHhhcCCceEEEEEeCc-----cchhhHhhcCc--
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLG-ASFKKAKSVLIGKVDCD-----EHKSLCSKYGV--   94 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~-~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i--   94 (358)
                      ....+|+.-+|+.++...+.+||.|=...  |--+-+..|.+++ +.....+++.++.|...     ++.+|+++|++  
T Consensus         4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            45689999999999999999999997554  6778889999999 66656678999999775     46789999999  


Q ss_pred             cCCCeEEEccCCCCCcccc--cCCCCHHHHHHHHhccCCCC
Q 018270           95 QGYPTIQWFPKGSLEPKKY--EGPRSTEALAEYVNNEGGTN  133 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~--~g~~~~~~i~~~i~~~~~~~  133 (358)
                      ..||.+++|..+...+..|  .|..+.+.|..|+.++++..
T Consensus        82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~y  122 (126)
T PF07912_consen   82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLY  122 (126)
T ss_dssp             CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--
T ss_pred             ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCee
Confidence            5799999999777778888  89999999999999887643

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.78  E-value=3.8e-08  Score=80.62  Aligned_cols=88  Identities=16%  Similarity=0.080  Sum_probs=63.9

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHH-hcCCCCeEEEEEeCcc-----------------------------cHHH
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANLDADK-----------------------------YKDL  207 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~-~~~~~~v~~~~vd~~~-----------------------------~~~l  207 (358)
                      .++.++|.|||+||++|+..+|.+.+++.. +..+.--....||.++                             ...+
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v  137 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV  137 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence            589999999999999999999999999753 3210000013333332                             2246


Q ss_pred             HHhcCCCcccEE-EEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          208 AEKYGVSGFPTL-KFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       208 ~~~~~v~~~Pti-~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      ...||+.++|+- ++++..|+....+.|..+.+++.+.+
T Consensus       138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            778999999777 78887777888899999888876643

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.76  E-value=3.5e-08  Score=78.93  Aligned_cols=80  Identities=28%  Similarity=0.493  Sum_probs=62.2

Q ss_pred             cCCCcEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------chhhHhhcCcc
Q 018270           38 GQDRGALVEFYAP-WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQ   95 (358)
Q Consensus        38 ~~~~~~lv~fya~-~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~   95 (358)
                      -++++++|.||+. |||+|+...|.+.++.+.++.. .+.++.|..+.                     +..+.+.|++.
T Consensus        26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~  104 (146)
T PF08534_consen   26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVT  104 (146)
T ss_dssp             GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred             hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCc
Confidence            4689999999999 9999999999999999887643 35555554432                     23578889988


Q ss_pred             ---------CCCeEEEccCCCCCcccccCCCC
Q 018270           96 ---------GYPTIQWFPKGSLEPKKYEGPRS  118 (358)
Q Consensus        96 ---------~~P~l~~~~~~~~~~~~~~g~~~  118 (358)
                               ++|+++++..++.......|..+
T Consensus       105 ~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  105 IMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             EECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             cccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence                     99999999888866555556544

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.75  E-value=8.9e-08  Score=81.93  Aligned_cols=91  Identities=14%  Similarity=0.100  Sum_probs=66.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--------c---cHHHH-HhcCC------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------K---YKDLA-EKYGV------------  213 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--------~---~~~l~-~~~~v------------  213 (358)
                      .+++++|.||++||++|....|.+.++.+.++. .++.++.|+++        +   ...++ +++++            
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~-~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G  176 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG  176 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence            568999999999999999999999999999974 35777777753        1   12232 23332            


Q ss_pred             ----------------------CcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          214 ----------------------SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       214 ----------------------~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                                            ...|+.+++..+|+...+|.|..+.+++.+.|++.+
T Consensus       177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence                                  123677777766677777888888888888777654

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.74  E-value=4.9e-08  Score=83.52  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=67.7

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------c----hhhH-hhcCc------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------H----KSLC-SKYGV------------   94 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~~~i------------   94 (358)
                      .+++++|.||++||++|....|.+.++.+++++. .+.++.|+++.       +    .+++ +++++            
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G  176 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG  176 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence            4689999999999999999999999999999753 47888888631       1    2222 23222            


Q ss_pred             ----------------------cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           95 ----------------------QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        95 ----------------------~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                                            ...|+.++++++|....+|.|..+.+++.+.|+..+
T Consensus       177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence                                  224777888777777778888888888888777653

>smart00594 UAS UAS domain

Probab=98.74  E-value=1.1e-07  Score=73.53  Aligned_cols=87  Identities=10%  Similarity=0.175  Sum_probs=66.7

Q ss_pred             cCCCcEEEEEcCCCCcccchhhh-hHH--HHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeCCC-c---
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAP-TYE--KVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGN-K---  227 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~-~~~--~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g~-~---  227 (358)
                      ..++.++|.|+++||++|+.+.. .|.  ++.+.+.  .++++..+|.+  +...++.+|+++++|+++++.+.+ .   
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~  102 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI  102 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence            56789999999999999999854 232  2333342  36888888866  556799999999999999996554 1   


Q ss_pred             -ceeeecCCCCHHHHHHHH
Q 018270          228 -DGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       228 -~~~~~~g~~~~~~l~~~i  245 (358)
                       ...+..|..++++|+.++
T Consensus       103 ~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      103 EWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEeccccCCCCHHHHHHhh
Confidence             345678999999999876

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.71  E-value=4.4e-08  Score=82.29  Aligned_cols=91  Identities=12%  Similarity=0.102  Sum_probs=65.2

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-----------cchhhHhhcCcc------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-----------EHKSLCSKYGVQ------------   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~------------   95 (358)
                      .+++++|.|||+||++|+...|.+.++.+++++ ..+.++.|+++           +...+++++++.            
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~  116 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE  116 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-CceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence            478999999999999999999999999999975 34788888763           123345555431            


Q ss_pred             ------------------------CCC---eEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           96 ------------------------GYP---TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        96 ------------------------~~P---~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                                              .+|   +.++++.+|....++.|..+.+.+.+.|....
T Consensus       117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll  178 (199)
T PTZ00056        117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL  178 (199)
T ss_pred             ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence                                    111   45566666655566777777777777777653

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.71  E-value=2.8e-08  Score=70.97  Aligned_cols=66  Identities=32%  Similarity=0.557  Sum_probs=48.9

Q ss_pred             hcCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeC
Q 018270          156 LDKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK  224 (358)
Q Consensus       156 ~~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~  224 (358)
                      ...+++++|.|+++||++|+.+...+   .++.+.+.  .+++.+.+|.++........+ .++|+++++.+
T Consensus        14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp   82 (82)
T PF13899_consen   14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP   82 (82)
T ss_dssp             HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred             HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence            36789999999999999999997655   23444332  478999999986654433222 67999999864

...

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=2.2e-08  Score=81.42  Aligned_cols=88  Identities=24%  Similarity=0.527  Sum_probs=73.2

Q ss_pred             CCCCceEc-CcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC--
Q 018270          139 VPSNVVVL-TADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--  214 (358)
Q Consensus       139 ~~~~v~~l-~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~--  214 (358)
                      -|..++.. +.+.+++.+. +....++|.|+|.|.+.|....|.|.+|+.+|. .+.+.|++||+...++.+.+|+|+  
T Consensus       122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn-~~~lkFGkvDiGrfpd~a~kfris~s  200 (265)
T KOG0914|consen  122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYN-NNLLKFGKVDIGRFPDVAAKFRISLS  200 (265)
T ss_pred             CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhC-CCCCcccceeeccCcChHHheeeccC
Confidence            45566777 4555666552 344678999999999999999999999999996 568999999999999999999986  


Q ss_pred             ----cccEEEEEeCCCc
Q 018270          215 ----GFPTLKFFPKGNK  227 (358)
Q Consensus       215 ----~~Pti~~~~~g~~  227 (358)
                          ..||+.+|.+|..
T Consensus       201 ~~srQLPT~ilFq~gkE  217 (265)
T KOG0914|consen  201 PGSRQLPTYILFQKGKE  217 (265)
T ss_pred             cccccCCeEEEEccchh
Confidence                4899999998854

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.68  E-value=1.1e-07  Score=79.37  Aligned_cols=86  Identities=19%  Similarity=0.251  Sum_probs=61.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC------------------ccchhhHhhcCccCCCeE
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC------------------DEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~------------------~~~~~l~~~~~i~~~P~l  100 (358)
                      .+++++|+||++||++|+...|.+.++.+...  .++.++..|.                  ....++++.|++.++|+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            67899999999999999999999999887642  2344433211                  013467788999999999


Q ss_pred             EEccCCCCCcccccCC-CCHHHHHHHHhc
Q 018270          101 QWFPKGSLEPKKYEGP-RSTEALAEYVNN  128 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~-~~~~~i~~~i~~  128 (358)
                      +++++++..  .+.|. ...+.+.+.++.
T Consensus       151 ~lID~~G~I--~~~g~~~~~~~le~ll~~  177 (189)
T TIGR02661       151 VLLDQDGKI--RAKGLTNTREHLESLLEA  177 (189)
T ss_pred             EEECCCCeE--EEccCCCCHHHHHHHHHH
Confidence            999877754  34454 345666666654

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PLN02412 probable glutathione peroxidase

Probab=98.67  E-value=2.1e-07  Score=76.03  Aligned_cols=43  Identities=14%  Similarity=0.168  Sum_probs=37.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA  201 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~  201 (358)
                      .+++++|.||++||++|+...|.+.++.+.|+.. ++.++.|.+
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~   70 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPC   70 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecc
Confidence            5689999999999999999999999999999743 588887775

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2.1e-07  Score=76.72  Aligned_cols=178  Identities=17%  Similarity=0.326  Sum_probs=113.9

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270           30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~  109 (358)
                      .+.|  .....+..+++||++||..|.++...++.+++..   .++.+++++.++.++++..+.+...|..+++..+...
T Consensus         9 ~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~---~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v   83 (227)
T KOG0911|consen    9 QEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF---KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKV   83 (227)
T ss_pred             HHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh---hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhh
Confidence            3445  3357888999999999999999999999999988   6689999999999999999999999999999666543


Q ss_pred             cccccCCCCHHHHHHH---HhccCCCCccccCCCCCceEc-------CcccHHHHHhcCCCcEEEEE----cCCCCcccc
Q 018270          110 PKKYEGPRSTEALAEY---VNNEGGTNVKIAAVPSNVVVL-------TADNFDEIVLDKSKDVLVEF----YAPWCGHCK  175 (358)
Q Consensus       110 ~~~~~g~~~~~~i~~~---i~~~~~~~~~~~~~~~~v~~l-------~~~~f~~~~~~~~~~v~v~f----~a~~C~~c~  175 (358)
                       .+..|.........+   ......  .........+.+.       ..+..++.+  ..++|++..    -.|.||..+
T Consensus        84 -~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~~l~~lv--~a~~v~lFmKG~p~~P~CGFS~  158 (227)
T KOG0911|consen   84 -DRLSGADPPFLVSKVEKLAESGSA--SLGMGLSTTIRETQTTNETDLDNRLEKLV--KAKPVMLFMKGTPEEPKCGFSR  158 (227)
T ss_pred             -hhhhccCcHHHHHHHHHhhhhccc--ccCCCCCcchhcccccchhhHHHHHHHhc--ccCeEEEEecCCCCcccccccH
Confidence             566665544433332   222210  0001111112221       111233333  334444333    246677777


Q ss_pred             hhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCC-CcccEEE-EEeCC
Q 018270          176 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV-SGFPTLK-FFPKG  225 (358)
Q Consensus       176 ~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v-~~~Pti~-~~~~g  225 (358)
                      ++...++..        ++.+...|+-.++++.+..+. +.+||+- +|-+|
T Consensus       159 ~~v~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G  202 (227)
T KOG0911|consen  159 QLVGILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG  202 (227)
T ss_pred             HHHHHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC
Confidence            776665543        455788888888877665442 3456654 55555

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.63  E-value=5.4e-07  Score=74.13  Aligned_cols=96  Identities=16%  Similarity=0.234  Sum_probs=72.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-----------------------------cHHHH
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------------~~~l~  208 (358)
                      .++++++.||++||+.|....+.+.++.+.+.. .++.++.|..+.                             ...++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  102 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA  102 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence            678999999999999999999999999999963 457777776542                             12567


Q ss_pred             HhcCCCcccEEEEEeCCCcceeee---------cCCCCHHHHHHHHHHhcCCCCC
Q 018270          209 EKYGVSGFPTLKFFPKGNKDGEEY---------GGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       209 ~~~~v~~~Pti~~~~~g~~~~~~~---------~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      +.|++...|+++++.++++.....         .+..+.+++.+-|+..+.....
T Consensus       103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  157 (171)
T cd02969         103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV  157 (171)
T ss_pred             HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence            789999999999998666533221         1234678888888887765443

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.63  E-value=2.1e-07  Score=75.01  Aligned_cols=43  Identities=16%  Similarity=0.210  Sum_probs=38.1

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC   82 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~   82 (358)
                      ++++++|.||++||++|+...|.+.++.+++++ ..+.+..++|
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-~~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP-SHFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-CCeEEEEEec
Confidence            468899999999999999999999999999975 3588888886

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.62  E-value=2.7e-07  Score=77.09  Aligned_cols=86  Identities=22%  Similarity=0.320  Sum_probs=60.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc------------------ccHHHHHhcCCCcccEE
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD------------------KYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~------------------~~~~l~~~~~v~~~Pti  219 (358)
                      .+++++|.||++||++|+...|.+.++.+...  .++.++..|..                  ...++.+.|++.++|+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            67899999999999999999999999887642  34555542210                  13467889999999998


Q ss_pred             EEEeCCCcceeeecCC-CCHHHHHHHHHH
Q 018270          220 KFFPKGNKDGEEYGGG-RDLEDFVSFINE  247 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~-~~~~~l~~~i~~  247 (358)
                      +++.++++  +.+.|. .+.+.+.+.++.
T Consensus       151 ~lID~~G~--I~~~g~~~~~~~le~ll~~  177 (189)
T TIGR02661       151 VLLDQDGK--IRAKGLTNTREHLESLLEA  177 (189)
T ss_pred             EEECCCCe--EEEccCCCCHHHHHHHHHH
Confidence            88876554  334453 345566666543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=8.7e-07  Score=76.45  Aligned_cols=116  Identities=21%  Similarity=0.358  Sum_probs=90.5

Q ss_pred             cCCCeEEcChhhHHHHhcC-CC--cEEEEEECC----CChhhhhhhHHHHHHHHHhhcC----C--ceEEEEEeCccchh
Q 018270           21 LADDVVVLTEDNFEKEVGQ-DR--GALVEFYAP----WCGHCKKLAPEYEKLGASFKKA----K--SVLIGKVDCDEHKS   87 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~-~~--~~lv~fya~----~c~~C~~~~~~~~~~~~~~~~~----~--~v~~~~vd~~~~~~   87 (358)
                      +...|+.+++++|..+++. .+  .++|.|.|.    .|.-|+.+..+|..++..+...    +  ++.|..||.++.++
T Consensus        38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~  117 (331)
T KOG2603|consen   38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ  117 (331)
T ss_pred             CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence            3567999999999999842 22  367888874    4999999999999999887522    2  78999999999999


Q ss_pred             hHhhcCccCCCeEEEccCCCCCc---ccc---cCCCCHHHHHHHHhccCCCCccc
Q 018270           88 LCSKYGVQGYPTIQWFPKGSLEP---KKY---EGPRSTEALAEYVNNEGGTNVKI  136 (358)
Q Consensus        88 l~~~~~i~~~P~l~~~~~~~~~~---~~~---~g~~~~~~i~~~i~~~~~~~~~~  136 (358)
                      ..+.+++++.|++++|.+....+   ..+   +-...++++.+|+.+.+.....+
T Consensus       118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~s  172 (331)
T KOG2603|consen  118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVRS  172 (331)
T ss_pred             HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheeee
Confidence            99999999999999996643221   111   11334999999999988766653

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.56  E-value=6.5e-07  Score=72.17  Aligned_cols=43  Identities=16%  Similarity=0.156  Sum_probs=37.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA  201 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~  201 (358)
                      .+++++|.||++||++|+...|.+.++.+.|+. .++.++.+++
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-~~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP-SHFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-CCeEEEEEec
Confidence            578899999999999999999999999999974 3677877775

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.56  E-value=1.3e-07  Score=74.16  Aligned_cols=70  Identities=29%  Similarity=0.547  Sum_probs=55.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCC---CeEEEEEeCccc-----------------------HHHHHhc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED---DVVVANLDADKY-----------------------KDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~---~v~~~~vd~~~~-----------------------~~l~~~~  211 (358)
                      .++.|.+.|.|.||+||+++-|.+.++.+..+.+.   .++|+.-|-+..                       ++++.+|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            57999999999999999999999998888876442   355555444422                       2788999


Q ss_pred             CCCcccEEEEEeCCCc
Q 018270          212 GVSGFPTLKFFPKGNK  227 (358)
Q Consensus       212 ~v~~~Pti~~~~~g~~  227 (358)
                      +|.+.|++++..+.+.
T Consensus       112 ~v~~iP~l~i~~~dG~  127 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGT  127 (157)
T ss_pred             ccCcCceeEEecCCCC
Confidence            9999999998876654

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.56  E-value=3.6e-07  Score=73.56  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=36.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA  201 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~  201 (358)
                      .+++++|.||++||+ |....|.+.++.+.|+. .++.++.|.+
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~vv~v~~   62 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVVLGFPC   62 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEEEEecc
Confidence            578999999999999 99999999999999964 3577777764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PLN02412 probable glutathione peroxidase

Probab=98.56  E-value=3.8e-07  Score=74.58  Aligned_cols=44  Identities=20%  Similarity=0.250  Sum_probs=38.6

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .+++++|.||++||++|+...|.+.++.+++++. .+.++.|+++
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~   71 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCN   71 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEeccc
Confidence            4689999999999999999999999999999853 4888888763

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.55  E-value=2.6e-07  Score=74.38  Aligned_cols=43  Identities=19%  Similarity=0.322  Sum_probs=37.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .+++++|.||++||+ |....|.+.++.+++++ ..+.++.|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEEEEeccC
Confidence            478999999999999 99999999999999975 34778777653

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.55  E-value=4.1e-07  Score=69.24  Aligned_cols=82  Identities=33%  Similarity=0.653  Sum_probs=66.2

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-cchhhHhhcC--ccCCCeEEEccCCCCCcccccC-
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYG--VQGYPTIQWFPKGSLEPKKYEG-  115 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~P~l~~~~~~~~~~~~~~g-  115 (358)
                      ++++++.||++||++|+.+.|.+.++++.+..  .+.+..+|.. ..+.+...|+  +..+|++.++.++.. ...+.+ 
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~  108 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVGG  108 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhhc
Confidence            78899999999999999999999999999863  6889999997 7889999999  999999998877654 244444 


Q ss_pred             -CCCHHHHHH
Q 018270          116 -PRSTEALAE  124 (358)
Q Consensus       116 -~~~~~~i~~  124 (358)
                       ......+..
T Consensus       109 ~~~~~~~~~~  118 (127)
T COG0526         109 KVLPKEALID  118 (127)
T ss_pred             ccCCHHHHHH
Confidence             344444443

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.54  E-value=4.2e-07  Score=69.13  Aligned_cols=67  Identities=42%  Similarity=0.818  Sum_probs=59.7

Q ss_pred             CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-ccHHHHHhcC--CCcccEEEEEeCCCc
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYG--VSGFPTLKFFPKGNK  227 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~l~~~~~--v~~~Pti~~~~~g~~  227 (358)
                      ++++++.||++||++|+.+.|.+.++++.+..  .+.+..++.. ....+...|+  +..+|++.++.++..
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  101 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE  101 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence            77899999999999999999999999999853  6888889986 7888999999  899999998887754

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.53  E-value=4.5e-07  Score=63.03  Aligned_cols=69  Identities=20%  Similarity=0.419  Sum_probs=51.8

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEEEEeCCCcceeeecCCCCH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  238 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~  238 (358)
                      +..|+++||++|+...+.+.+.        ++.+..+|++.++    ++.+.+++.++|++++.  | .   ...| .+.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~---~~~g-~~~   66 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-K---IIVG-FDP   66 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-E---EEee-CCH
Confidence            5689999999999998887652        4667778877554    35677999999999875  3 2   2445 577


Q ss_pred             HHHHHHHH
Q 018270          239 EDFVSFIN  246 (358)
Q Consensus       239 ~~l~~~i~  246 (358)
                      +.+.+|++
T Consensus        67 ~~i~~~i~   74 (74)
T TIGR02196        67 EKLDQLLE   74 (74)
T ss_pred             HHHHHHhC
Confidence            88888864

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.52  E-value=7e-07  Score=73.43  Aligned_cols=92  Identities=14%  Similarity=0.262  Sum_probs=68.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-----------------------------chhhH
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------------~~~l~   89 (358)
                      ++++++|+||++||+.|....+.+.++.+++.+ .++.++.|..+.                             +..++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  102 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA  102 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence            678999999999999999999999999999864 357777777643                             12356


Q ss_pred             hhcCccCCCeEEEccCCCCCcccc---------cCCCCHHHHHHHHhccCC
Q 018270           90 SKYGVQGYPTIQWFPKGSLEPKKY---------EGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        90 ~~~~i~~~P~l~~~~~~~~~~~~~---------~g~~~~~~i~~~i~~~~~  131 (358)
                      +.|++...|+++++++++......         .+..+.+++.+.|.....
T Consensus       103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  153 (171)
T cd02969         103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA  153 (171)
T ss_pred             HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence            788999999999998877542221         122356777777776543

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.46  E-value=2.7e-07  Score=72.32  Aligned_cols=71  Identities=25%  Similarity=0.455  Sum_probs=56.3

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC---CceEEEEEeCccc-----------------------hhhHhhc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA---KSVLIGKVDCDEH-----------------------KSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~---~~v~~~~vd~~~~-----------------------~~l~~~~   92 (358)
                      +++.+.++|-|.||++|+.|.|.+.++.+.+...   -.|.|+.-|-+..                       .+++++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            5699999999999999999999999999888754   2455554444321                       2578899


Q ss_pred             CccCCCeEEEccCCCCC
Q 018270           93 GVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        93 ~i~~~P~l~~~~~~~~~  109 (358)
                      +|.+.|++++..+.+..
T Consensus       112 ~v~~iP~l~i~~~dG~~  128 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGTV  128 (157)
T ss_pred             ccCcCceeEEecCCCCE
Confidence            99999999999887744

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.43  E-value=1.1e-06  Score=74.65  Aligned_cols=85  Identities=19%  Similarity=0.260  Sum_probs=66.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------cchhhHhhcCccCCCeEEEccCCCCC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------EHKSLCSKYGVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------~~~~l~~~~~i~~~P~l~~~~~~~~~  109 (358)
                      .++.-|++||.+.|++|+.+.|.+..+++.+.  -.|..+.+|..         .+..+++++||..+|++++..+++..
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~  196 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK  196 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence            36778999999999999999999999999985  23444445432         45788999999999999999887633


Q ss_pred             cc-cccCCCCHHHHHHH
Q 018270          110 PK-KYEGPRSTEALAEY  125 (358)
Q Consensus       110 ~~-~~~g~~~~~~i~~~  125 (358)
                      .. .-.|..+.++|.+-
T Consensus       197 ~~pv~~G~~s~~~L~~r  213 (215)
T PF13728_consen  197 WYPVSQGFMSLDELEDR  213 (215)
T ss_pred             EEEEeeecCCHHHHHHh
Confidence            22 33589998888764

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.41  E-value=1.5e-06  Score=60.29  Aligned_cols=69  Identities=22%  Similarity=0.437  Sum_probs=52.1

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEEccCCCCCcccccCCCCH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST  119 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~  119 (358)
                      +..|+++||++|+...+.+.+        ..+.+..+|.++++.    +++.+++.++|++++.  |  .  ...| .+.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~--------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~--~--~~~g-~~~   66 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS--------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H--K--IIVG-FDP   66 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH--------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C--E--EEee-CCH
Confidence            467999999999999888764        236777888876644    5677999999999985  2  1  2555 577


Q ss_pred             HHHHHHHh
Q 018270          120 EALAEYVN  127 (358)
Q Consensus       120 ~~i~~~i~  127 (358)
                      +.|.++++
T Consensus        67 ~~i~~~i~   74 (74)
T TIGR02196        67 EKLDQLLE   74 (74)
T ss_pred             HHHHHHhC
Confidence            88888764

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.40  E-value=1e-06  Score=59.03  Aligned_cols=60  Identities=47%  Similarity=0.842  Sum_probs=51.3

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHh---hcCccCCCeEEEccCC
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCS---KYGVQGYPTIQWFPKG  106 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~P~l~~~~~~  106 (358)
                      ++.||++||++|+.+.+.+.++ ....  ..+.+..++++...+...   .+++.++|+++++.++
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLN--KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhC--CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999998 3333  679999999998877665   8899999999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.39  E-value=2.4e-06  Score=70.94  Aligned_cols=43  Identities=14%  Similarity=0.180  Sum_probs=34.8

Q ss_pred             CCCcE-EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC
Q 018270          158 KSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA  201 (358)
Q Consensus       158 ~~~~v-~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~  201 (358)
                      .++++ ++.+||+||++|+...|.+.++.+.|+. .++.++.|++
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~   82 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEILAFPC   82 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEEEEEec
Confidence            46654 5667999999999999999999999964 3577777765

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.36  E-value=5.3e-06  Score=68.95  Aligned_cols=107  Identities=21%  Similarity=0.283  Sum_probs=88.8

Q ss_pred             hccCCCeEEcChhhHHHHhcCCCc-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc--
Q 018270           19 SALADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--   95 (358)
Q Consensus        19 ~~~~~~v~~l~~~~f~~~~~~~~~-~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--   95 (358)
                      ....+.+..+|.+++..+...+.+ +++.|+.........+...+..++..++  +.+.|+.+|++..+.+++.+|++  
T Consensus        73 ~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~~f~~~d~~~~~~~~~~~~i~~~  150 (184)
T PF13848_consen   73 KNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK--GKINFVYVDADDFPRLLKYFGIDED  150 (184)
T ss_dssp             HHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT--TTSEEEEEETTTTHHHHHHTTTTTS
T ss_pred             HhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC--CeEEEEEeehHHhHHHHHHcCCCCc
Confidence            344567999999999999988876 7777877777888999999999999987  67999999999889999999998  


Q ss_pred             CCCeEEEccCCCCC-cccccCCCCHHHHHHHHh
Q 018270           96 GYPTIQWFPKGSLE-PKKYEGPRSTEALAEYVN  127 (358)
Q Consensus        96 ~~P~l~~~~~~~~~-~~~~~g~~~~~~i~~~i~  127 (358)
                      .+|+++++...... ...+.|..+.++|.+|++
T Consensus       151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~  183 (184)
T PF13848_consen  151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLN  183 (184)
T ss_dssp             SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred             cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence            99999999854432 122378999999999986

...

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.35  E-value=1.8e-06  Score=68.39  Aligned_cols=85  Identities=20%  Similarity=0.245  Sum_probs=60.1

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------chhhHhhcCccC
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQG   96 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~   96 (358)
                      .+++++|.|| +.||+.|....+.+.++.+.+.+ ..+.++.|..+.                     +..+++.||+..
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  100 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG  100 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence            3789999999 58999999999999999998864 346666665432                     234566677776


Q ss_pred             C---------CeEEEccCCCCCcccccCCCCHHHHHH
Q 018270           97 Y---------PTIQWFPKGSLEPKKYEGPRSTEALAE  124 (358)
Q Consensus        97 ~---------P~l~~~~~~~~~~~~~~g~~~~~~i~~  124 (358)
                      .         |+.+++++++.....+.|.....++.+
T Consensus       101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~  137 (140)
T cd03017         101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE  137 (140)
T ss_pred             ccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence            6         777777766655566666655544444

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.34  E-value=2.6e-06  Score=74.25  Aligned_cols=104  Identities=17%  Similarity=0.299  Sum_probs=75.8

Q ss_pred             CCeEEcC-hhhHHHHhcC---CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           23 DDVVVLT-EDNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        23 ~~v~~l~-~~~f~~~~~~---~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      ..+.+++ .+.|.+.+..   +..|+|+||-+.++.|..+...|..+|.+|   +.+.|++|.....+ +...|.+..+|
T Consensus       125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky---p~vKFvkI~a~~~~-~~~~f~~~~LP  200 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY---PEVKFVKIRASKCP-ASENFPDKNLP  200 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH----TTSEEEEEEECGCC-TTTTS-TTC-S
T ss_pred             ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC---CceEEEEEehhccC-cccCCcccCCC
Confidence            4678885 5789888833   446899999999999999999999999999   67999999987765 77899999999


Q ss_pred             eEEEccCCCCCcccc-------cCCCCHHHHHHHHhccCC
Q 018270           99 TIQWFPKGSLEPKKY-------EGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~-------~g~~~~~~i~~~i~~~~~  131 (358)
                      ++++|++|... ..+       ....+..++..|+.++.-
T Consensus       201 tllvYk~G~l~-~~~V~l~~~~g~df~~~dlE~~L~~~G~  239 (265)
T PF02114_consen  201 TLLVYKNGDLI-GNFVGLTDLLGDDFFTEDLEAFLIEYGV  239 (265)
T ss_dssp             EEEEEETTEEE-EEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred             EEEEEECCEEE-EeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence            99999987532 222       225678889899887643

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.32  E-value=2.3e-06  Score=68.18  Aligned_cols=86  Identities=16%  Similarity=0.376  Sum_probs=61.5

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhH-HH--HHHHHHhhcCCceEEEEEeCccchhhHhhc------
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAP-EY--EKLGASFKKAKSVLIGKVDCDEHKSLCSKY------   92 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~-~~--~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~------   92 (358)
                      .-.+...+++.|..+-+++|+++|.++++||..|..+.. .|  .++++.++  ..+.-++||.++.+++...|      
T Consensus        19 ~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN--~~FI~VkvDree~Pdid~~y~~~~~~   96 (163)
T PF03190_consen   19 PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN--RNFIPVKVDREERPDIDKIYMNAVQA   96 (163)
T ss_dssp             SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH--HH-EEEEEETTT-HHHHHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh--CCEEEEEeccccCccHHHHHHHHHHH
Confidence            345677788889999999999999999999999999986 44  57788887  56888899999999998888      


Q ss_pred             --CccCCCeEEEccCCCCC
Q 018270           93 --GVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        93 --~i~~~P~l~~~~~~~~~  109 (358)
                        |..++|+.+++.+.+..
T Consensus        97 ~~~~gGwPl~vfltPdg~p  115 (163)
T PF03190_consen   97 MSGSGGWPLTVFLTPDGKP  115 (163)
T ss_dssp             HHS---SSEEEEE-TTS-E
T ss_pred             hcCCCCCCceEEECCCCCe
Confidence              78899999999987743

; PDB: 3IRA_A.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.31  E-value=6.1e-06  Score=65.81  Aligned_cols=95  Identities=17%  Similarity=0.447  Sum_probs=60.3

Q ss_pred             HHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhh-hHH--HHHHHhcCCCCeEEEEE
Q 018270          123 AEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP-TYE--KVAAAFTLEDDVVVANL  199 (358)
Q Consensus       123 ~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~-~~~--~la~~~~~~~~v~~~~v  199 (358)
                      .-++.++....+.       ....+.+.|+..- ..+++++|.++++||..|..|.. .|.  ++|+.+  +.+++-++|
T Consensus         9 Spyl~~ha~~~V~-------W~~w~~ea~~~Ak-~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~l--N~~FI~Vkv   78 (163)
T PF03190_consen    9 SPYLRQHAHNPVN-------WQPWGEEALEKAK-KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYL--NRNFIPVKV   78 (163)
T ss_dssp             -HHHHTTTTSSS---------B-SSHHHHHHHH-HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHH--HHH-EEEEE
T ss_pred             CHHHHHhccCCCC-------cccCCHHHHHHHH-hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHH--hCCEEEEEe
Confidence            3466666554433       3344556666654 78899999999999999999864 343  456655  357999999


Q ss_pred             eCcccHHHHHhc--------CCCcccEEEEEeCCCc
Q 018270          200 DADKYKDLAEKY--------GVSGFPTLKFFPKGNK  227 (358)
Q Consensus       200 d~~~~~~l~~~~--------~v~~~Pti~~~~~g~~  227 (358)
                      |.++.+++...|        |..|+|+.+|..+.++
T Consensus        79 Dree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~  114 (163)
T PF03190_consen   79 DREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGK  114 (163)
T ss_dssp             ETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-
T ss_pred             ccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCC
Confidence            999999998888        7889999999987654

; PDB: 3IRA_A.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.31  E-value=4.3e-06  Score=66.18  Aligned_cols=85  Identities=20%  Similarity=0.221  Sum_probs=62.4

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---------------------HHHHHhcCCCc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVSG  215 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~v~~  215 (358)
                      .+++++|.|| +.||+.|....+.+.++...+.. .++.++.|..+..                     ..+++.||+..
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  100 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG  100 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence            4788999999 58999999999999999998863 3566666654422                     26777888877


Q ss_pred             c---------cEEEEEeCCCcceeeecCCCCHHHHHH
Q 018270          216 F---------PTLKFFPKGNKDGEEYGGGRDLEDFVS  243 (358)
Q Consensus       216 ~---------Pti~~~~~g~~~~~~~~g~~~~~~l~~  243 (358)
                      .         |+.+++.++++....+.|....+++.+
T Consensus       101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~  137 (140)
T cd03017         101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE  137 (140)
T ss_pred             ccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence            7         888888766666667777665555443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.30  E-value=4.7e-06  Score=70.70  Aligned_cols=84  Identities=24%  Similarity=0.279  Sum_probs=65.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------ccHHHHHhcCCCcccEEEEEeCCCc-
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------KYKDLAEKYGVSGFPTLKFFPKGNK-  227 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------~~~~l~~~~~v~~~Pti~~~~~g~~-  227 (358)
                      .++.-++.||.+.|+.|..+.|++..+++.+.  -.+..+.+|..         .+.++++++||..+|++++...++. 
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~  196 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK  196 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence            46778999999999999999999999999984  23444444421         3578999999999999999987764 


Q ss_pred             ceeeecCCCCHHHHHH
Q 018270          228 DGEEYGGGRDLEDFVS  243 (358)
Q Consensus       228 ~~~~~~g~~~~~~l~~  243 (358)
                      ....-.|..+.++|.+
T Consensus       197 ~~pv~~G~~s~~~L~~  212 (215)
T PF13728_consen  197 WYPVSQGFMSLDELED  212 (215)
T ss_pred             EEEEeeecCCHHHHHH
Confidence            3334467888888865

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.29  E-value=3.6e-06  Score=64.01  Aligned_cols=89  Identities=13%  Similarity=0.058  Sum_probs=66.9

Q ss_pred             cCCCcEEEEEECC----CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccCCCeEEEccCCC---C
Q 018270           38 GQDRGALVEFYAP----WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGS---L  108 (358)
Q Consensus        38 ~~~~~~lv~fya~----~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~~~~---~  108 (358)
                      ++.|+++|++|++    ||..|+..... .++.+.++  .++.+...|++  +...++..+++.++|++.++....   .
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~   91 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT   91 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence            7889999999999    88888655311 34445554  45777778876  446799999999999999994322   2


Q ss_pred             CcccccCCCCHHHHHHHHhcc
Q 018270          109 EPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       109 ~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ...+..|..+++++...++..
T Consensus        92 vv~~i~G~~~~~~ll~~L~~~  112 (116)
T cd02991          92 IVGRLEGLIQPEDLINRLTFI  112 (116)
T ss_pred             EEEEEeCCCCHHHHHHHHHHH
Confidence            245789999999999988764

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.29  E-value=4.7e-06  Score=58.42  Aligned_cols=73  Identities=22%  Similarity=0.498  Sum_probs=55.4

Q ss_pred             EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccC-CCCHHHHH
Q 018270           45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG-PRSTEALA  123 (358)
Q Consensus        45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g-~~~~~~i~  123 (358)
                      |.+++++|++|..+...+.+++..++    +.+-.+|....+++ .+|||.++|++++  +|.   ..+.| ..+.+++.
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el~   72 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK---VVFVGRVPSKEELK   72 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE---EEEESS--HHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHHH
Confidence            44578899999999999999998873    55666677666666 9999999999965  442   67888 77888888


Q ss_pred             HHHh
Q 018270          124 EYVN  127 (358)
Q Consensus       124 ~~i~  127 (358)
                      +||+
T Consensus        73 ~~l~   76 (76)
T PF13192_consen   73 ELLE   76 (76)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8874

...

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.28  E-value=3.5e-06  Score=59.13  Aligned_cols=69  Identities=23%  Similarity=0.412  Sum_probs=46.6

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHh-----cCCCcccEEEEEeCCCcceeeecCCCC
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK-----YGVSGFPTLKFFPKGNKDGEEYGGGRD  237 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~-----~~v~~~Pti~~~~~g~~~~~~~~g~~~  237 (358)
                      ++.|+++||++|+.+.+.+.+++..        +-.+|++++......     +++.++|++ ++.+|.  .   -...+
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~~~--------~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~--~---l~~~~   67 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLGAA--------YEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS--F---LTNPS   67 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcCCc--------eEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe--E---ecCCC
Confidence            5789999999999999988766433        335677666555554     388899997 465552  1   22445


Q ss_pred             HHHHHHHH
Q 018270          238 LEDFVSFI  245 (358)
Q Consensus       238 ~~~l~~~i  245 (358)
                      ..++.+.+
T Consensus        68 ~~~~~~~l   75 (77)
T TIGR02200        68 AAQVKAKL   75 (77)
T ss_pred             HHHHHHHh
Confidence            55665554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=8.8e-06  Score=63.02  Aligned_cols=89  Identities=22%  Similarity=0.363  Sum_probs=68.8

Q ss_pred             hcCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcc----------------cHHHHHhcCCCcc
Q 018270          156 LDKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----------------YKDLAEKYGVSGF  216 (358)
Q Consensus       156 ~~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~----------------~~~l~~~~~v~~~  216 (358)
                      ...++..+++|..+.|+.|.++....   .++.+.+.  +.+.++.++++.                ..+|+..|+|+++
T Consensus        39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk--~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst  116 (182)
T COG2143          39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK--EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST  116 (182)
T ss_pred             CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh--hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence            35678999999999999999986533   34444443  456677666652                3489999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                      ||+++|+..|+......|...++++..-++
T Consensus       117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143         117 PTFVFFDKTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             ceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence            999999887777777889999988876654

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.26  E-value=5e-06  Score=64.25  Aligned_cols=69  Identities=23%  Similarity=0.546  Sum_probs=56.6

Q ss_pred             CCCcEEEEEcCC-CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---------------------HHHHHhcCCC-
Q 018270          158 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVS-  214 (358)
Q Consensus       158 ~~~~v~v~f~a~-~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~v~-  214 (358)
                      .+++++|.||+. ||++|+...+.+.++...++. .++.++.|..+..                     ..+++.|++. 
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  102 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED  102 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence            568999999999 999999999999999999973 4677777776532                     2678888888 


Q ss_pred             -----cccEEEEEeCCCc
Q 018270          215 -----GFPTLKFFPKGNK  227 (358)
Q Consensus       215 -----~~Pti~~~~~g~~  227 (358)
                           .+|+++++.+++.
T Consensus       103 ~~~~~~~p~~~lid~~g~  120 (124)
T PF00578_consen  103 EKDTLALPAVFLIDPDGK  120 (124)
T ss_dssp             TTTSEESEEEEEEETTSB
T ss_pred             ccCCceEeEEEEECCCCE
Confidence                 8898888887764

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.26  E-value=8.9e-06  Score=66.99  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=63.4

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .++.++|.|| +.||++|....+.+.++++.|.. .++.++.|..+.                            ...++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~  106 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS  106 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence            4688999999 89999999999999999999964 345555554432                            12466


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHh
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK  248 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~  248 (358)
                      +.||+.      ..|+.+++.+.+.....+.+    .++.+++...|+..
T Consensus       107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            677775      46788888766665555532    34667777777543

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.26  E-value=2.8e-06  Score=56.82  Aligned_cols=60  Identities=42%  Similarity=0.843  Sum_probs=50.0

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHH---hcCCCcccEEEEEeCC
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTLKFFPKG  225 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~---~~~v~~~Pti~~~~~g  225 (358)
                      ++.|+++||++|..+.+.+.++ +..  ..++.+..++++.......   .+++.++|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALL--NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-Hhh--CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999998 222  3578999999987766554   7899999999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.26  E-value=3.4e-06  Score=65.19  Aligned_cols=69  Identities=20%  Similarity=0.518  Sum_probs=54.7

Q ss_pred             CCCcEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc---------------------hhhHhhcCcc-
Q 018270           39 QDRGALVEFYAP-WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---------------------KSLCSKYGVQ-   95 (358)
Q Consensus        39 ~~~~~lv~fya~-~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i~-   95 (358)
                      .+++++|.||+. ||++|+...+.+.++..+++. ..+.++.|..+..                     .++++.|++. 
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  102 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED  102 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence            569999999999 999999999999999999874 3577777766533                     3456677777 


Q ss_pred             -----CCCeEEEccCCCC
Q 018270           96 -----GYPTIQWFPKGSL  108 (358)
Q Consensus        96 -----~~P~l~~~~~~~~  108 (358)
                           .+|+++++++++.
T Consensus       103 ~~~~~~~p~~~lid~~g~  120 (124)
T PF00578_consen  103 EKDTLALPAVFLIDPDGK  120 (124)
T ss_dssp             TTTSEESEEEEEEETTSB
T ss_pred             ccCCceEeEEEEECCCCE
Confidence                 7788888777654

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.22  E-value=5.4e-06  Score=68.85  Aligned_cols=44  Identities=20%  Similarity=0.276  Sum_probs=35.6

Q ss_pred             CCCcE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .++++ ++.+||+||++|+...|.+.++.+++++ ..+.++.|+++
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~~   83 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEILAFPCN   83 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEEEEEecc
Confidence            45654 4566999999999999999999999975 35888888763

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.22  E-value=7.1e-06  Score=70.85  Aligned_cols=88  Identities=22%  Similarity=0.206  Sum_probs=67.7

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------chhhHhhcCccCCCeEEEccCCCCCc
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------HKSLCSKYGVQGYPTIQWFPKGSLEP  110 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~P~l~~~~~~~~~~  110 (358)
                      .+.-|++||.+.|++|+++.|.+..+++.+.  -.|..+.+|..-         +..+++++||..+|++++..+++...
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~  227 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM  227 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence            4578999999999999999999999999985  234444444432         24588999999999999998875442


Q ss_pred             cc-ccCCCCHHHHHHHHhcc
Q 018270          111 KK-YEGPRSTEALAEYVNNE  129 (358)
Q Consensus       111 ~~-~~g~~~~~~i~~~i~~~  129 (358)
                      .. -.|..+.++|.+-+...
T Consensus       228 ~pv~~G~iS~deL~~Ri~~v  247 (256)
T TIGR02739       228 SPLAYGFISQDELKERILNV  247 (256)
T ss_pred             EEEeeccCCHHHHHHHHHHH
Confidence            22 35899999998766543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.20  E-value=9.2e-06  Score=56.91  Aligned_cols=71  Identities=24%  Similarity=0.536  Sum_probs=53.6

Q ss_pred             EcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecC-CCCHHHHHHH
Q 018270          166 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSF  244 (358)
Q Consensus       166 f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g-~~~~~~l~~~  244 (358)
                      +++++|+.|..+...+++++..+.    +.+-.+|..+.+++ .+|||.++|++++  +|   ...|.| ..+.++|.+|
T Consensus         5 v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng---~~~~~G~~p~~~el~~~   74 (76)
T PF13192_consen    5 VFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NG---KVVFVGRVPSKEELKEL   74 (76)
T ss_dssp             EECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TT---EEEEESS--HHHHHHHH
T ss_pred             EeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CC---EEEEEecCCCHHHHHHH
Confidence            367889999999999999998872    55555666667777 9999999999854  34   267888 7889999988


Q ss_pred             HH
Q 018270          245 IN  246 (358)
Q Consensus       245 i~  246 (358)
                      |+
T Consensus        75 l~   76 (76)
T PF13192_consen   75 LE   76 (76)
T ss_dssp             HH
T ss_pred             hC
Confidence            74

...

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.20  E-value=2e-05  Score=59.52  Aligned_cols=103  Identities=15%  Similarity=0.118  Sum_probs=79.7

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHH---hcCCCCeEEEEEeCcccHHHHHhcCCCc--cc
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA---FTLEDDVVVANLDADKYKDLAEKYGVSG--FP  217 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~---~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~P  217 (358)
                      |.+++.+++..+. +.+.+..++|+.+-  .-....+.+.++|+.   ++  +++.|+.+|.+......+.||++.  +|
T Consensus         1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P   75 (111)
T cd03072           1 VREITFENAEELT-EEGLPFLILFHDKD--DLESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLP   75 (111)
T ss_pred             CcccccccHHHHh-cCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCC
Confidence            4568889998777 66666666666331  345678899999999   86  569999999998888999999997  99


Q ss_pred             EEEEEeCCCcceee-ecCCCCHHHHHHHHHHhcC
Q 018270          218 TLKFFPKGNKDGEE-YGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       218 ti~~~~~g~~~~~~-~~g~~~~~~l~~~i~~~~~  250 (358)
                      .+.+....+...+. +.+..+.++|.+|+++...
T Consensus        76 ~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          76 VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            99998765322343 5688999999999988653

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.20  E-value=1.8e-05  Score=59.74  Aligned_cols=102  Identities=16%  Similarity=0.077  Sum_probs=83.1

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHH---hhcCCceEEEEEeCccchhhHhhcCccC--CCe
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGAS---FKKAKSVLIGKVDCDEHKSLCSKYGVQG--YPT   99 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~---~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~P~   99 (358)
                      |.++|.+++......+.+..+.|+.+  ..-..+.+.+.++|+.   ++  +.+.|+.+|.++.....+.||+..  +|.
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P~   76 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLPV   76 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence            46789999998888888887777733  3457889999999999   87  669999999998877889999997  999


Q ss_pred             EEEccCCCCCccc-ccCCCCHHHHHHHHhccC
Q 018270          100 IQWFPKGSLEPKK-YEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       100 l~~~~~~~~~~~~-~~g~~~~~~i~~~i~~~~  130 (358)
                      +.+...++...+. +.+..+.++|.+|+++..
T Consensus        77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~  108 (111)
T cd03072          77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH  108 (111)
T ss_pred             EEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence            9998765433344 568889999999998764

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.20  E-value=2.2e-05  Score=57.83  Aligned_cols=90  Identities=22%  Similarity=0.383  Sum_probs=71.9

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCC
Q 018270           30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~  109 (358)
                      .+.++.++..+.+++|-|+.++|.   .....|.++|..++  +.+.|+.+.   +.++++++++.. |++++|++....
T Consensus         7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r--~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~   77 (97)
T cd02981           7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLR--DDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEE   77 (97)
T ss_pred             HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcc--cCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccC
Confidence            344666778889999999999876   57788999999886  468888777   467778787754 899999876545


Q ss_pred             cccccCCCCHHHHHHHHhc
Q 018270          110 PKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       110 ~~~~~g~~~~~~i~~~i~~  128 (358)
                      +..|.|..+.++|.+||..
T Consensus        78 ~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          78 PVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             CccCCCCCCHHHHHHHHHh
Confidence            5789999999999999964

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.20  E-value=1.5e-05  Score=65.22  Aligned_cols=42  Identities=21%  Similarity=0.417  Sum_probs=35.1

Q ss_pred             CCCcEEEEEcCCC-CcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~-C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .+++++|.||++| |++|....|.+.++++.+.   ++.++.|..+
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D   85 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD   85 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence            5779999999999 9999999999999999883   4666666555

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.18  E-value=8.5e-06  Score=67.10  Aligned_cols=90  Identities=16%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.|| +.||++|....+.+.++++++.+ ..+.+..|.++.                            ...++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~  106 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS  106 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence            4689999999 89999999999999999999975 345555555432                            22355


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhcc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNNE  129 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~~  129 (358)
                      +.|++.      ..|+.+++++++.....+    ...++.+++.+.|+..
T Consensus       107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            667775      467888888777654444    2235677788888654

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.16  E-value=9.1e-06  Score=70.93  Aligned_cols=104  Identities=21%  Similarity=0.322  Sum_probs=74.4

Q ss_pred             CCCceEcC-cccHHHHHhcC--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          140 PSNVVVLT-ADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       140 ~~~v~~l~-~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      -..+.+++ ++.|-+.+...  +..|+|.||.+.++.|..+...+..||..|   +.+.|++|..+..+ +...|.+..+
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky---p~vKFvkI~a~~~~-~~~~f~~~~L  199 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY---PEVKFVKIRASKCP-ASENFPDKNL  199 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH----TTSEEEEEEECGCC-TTTTS-TTC-
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC---CceEEEEEehhccC-cccCCcccCC
Confidence            45678885 47888877333  346899999999999999999999999998   57999999987665 6789999999


Q ss_pred             cEEEEEeCCCcceeeec-------CCCCHHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKDGEEYG-------GGRDLEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~-------g~~~~~~l~~~i~~~  248 (358)
                      ||+++|.+|.. ...+.       ...+..+|-.||.++
T Consensus       200 PtllvYk~G~l-~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  200 PTLLVYKNGDL-IGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             SEEEEEETTEE-EEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             CEEEEEECCEE-EEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            99999998743 22221       247788899898754

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.16  E-value=2.9e-05  Score=57.18  Aligned_cols=89  Identities=27%  Similarity=0.392  Sum_probs=68.9

Q ss_pred             ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcc
Q 018270          149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD  228 (358)
Q Consensus       149 ~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~  228 (358)
                      +.++.++ .....++|.|+.++|+   .....|.++|..++  +++.|+.+.   +.++++++++. -|++++|++....
T Consensus         8 ~~l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r--~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~   77 (97)
T cd02981           8 EELEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLR--DDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEE   77 (97)
T ss_pred             HHHHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhcc--cCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccC
Confidence            3345555 6788889999998776   56779999999885  357777654   56788888876 5899999876556


Q ss_pred             eeeecCCCCHHHHHHHHHH
Q 018270          229 GEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       229 ~~~~~g~~~~~~l~~~i~~  247 (358)
                      +..|.|..+.++|.+||..
T Consensus        78 ~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          78 PVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             CccCCCCCCHHHHHHHHHh
Confidence            7789999999999999964

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.15  E-value=1e-05  Score=56.77  Aligned_cols=70  Identities=26%  Similarity=0.486  Sum_probs=46.6

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhh-----cCccCCCeEEEccCCCCCcccccCCCC
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSK-----YGVQGYPTIQWFPKGSLEPKKYEGPRS  118 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~-----~~i~~~P~l~~~~~~~~~~~~~~g~~~  118 (358)
                      ++.|+++||++|+.+.+.+.+..        +.+-.+|.+++......     +++.++|+++ +.+|. .    -...+
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~-~~~g~-~----l~~~~   67 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK-FADGS-F----LTNPS   67 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEEE-ECCCe-E----ecCCC
Confidence            67899999999999999887553        33446777777665555     3899999974 55542 2    11334


Q ss_pred             HHHHHHHHh
Q 018270          119 TEALAEYVN  127 (358)
Q Consensus       119 ~~~i~~~i~  127 (358)
                      ..++.+.++
T Consensus        68 ~~~~~~~l~   76 (77)
T TIGR02200        68 AAQVKAKLQ   76 (77)
T ss_pred             HHHHHHHhh
Confidence            445555443

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.15  E-value=4.5e-05  Score=59.35  Aligned_cols=107  Identities=18%  Similarity=0.313  Sum_probs=77.5

Q ss_pred             CceEcCcccH-HHHHhcCCCcEEEEEcCCC---Ccc-c-chhhhhHHHHHHHhcCCCC-eEEEEEeCcccHHHHHhcCCC
Q 018270          142 NVVVLTADNF-DEIVLDKSKDVLVEFYAPW---CGH-C-KNLAPTYEKVAAAFTLEDD-VVVANLDADKYKDLAEKYGVS  214 (358)
Q Consensus       142 ~v~~l~~~~f-~~~~~~~~~~v~v~f~a~~---C~~-c-~~~~~~~~~la~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~  214 (358)
                      .+++|+..++ ++.. ..++..+|.|. |.   |.+ + ......+.++|+.|+  ++ +.|+.+|.++...+.+.||+.
T Consensus         3 ~~~~l~~~~~~~~~C-~~~~~C~i~~l-~~~~d~~~e~~~~~~~~l~~vAk~~k--gk~i~Fv~vd~~~~~~~~~~fgl~   78 (130)
T cd02983           3 EIIELTSEDVFEETC-EEKQLCIIAFL-PHILDCQASCRNKYLEILKSVAEKFK--KKPWGWLWTEAGAQLDLEEALNIG   78 (130)
T ss_pred             ceEEecCHHHHHhhc-cCCCeEEEEEc-CccccCCHHHHHHHHHHHHHHHHHhc--CCcEEEEEEeCcccHHHHHHcCCC
Confidence            5677876554 5566 33444445553 32   222 2 346789999999997  45 999999999998899999995


Q ss_pred             --cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          215 --GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       215 --~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                        ++|+++++...+.....+.|..+.+++.+|+++.+...
T Consensus        79 ~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk  118 (130)
T cd02983          79 GFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR  118 (130)
T ss_pred             ccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence              49999999876432222779999999999999987543

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.14  E-value=1.2e-05  Score=64.25  Aligned_cols=47  Identities=15%  Similarity=0.212  Sum_probs=36.2

Q ss_pred             CCcEEEE-EECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh
Q 018270           40 DRGALVE-FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS   87 (358)
Q Consensus        40 ~~~~lv~-fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~   87 (358)
                      +++++|. |++.||++|+...|.+.++.+++.. ..+.++.|+.+....
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~~~   70 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESPEK   70 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCHHH
Confidence            3455555 5699999999999999999999864 458888888765543

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.14  E-value=3.8e-06  Score=67.50  Aligned_cols=82  Identities=23%  Similarity=0.370  Sum_probs=73.3

Q ss_pred             CeEEc-ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l-~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ...++ ++.+|-+..+.+.-++++||-+.-..|+-+..+++.+|..+   -...|++||++..|-++.+++|...|++.+
T Consensus        67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h---~eTrFikvnae~~PFlv~kL~IkVLP~v~l  143 (211)
T KOG1672|consen   67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH---VETRFIKVNAEKAPFLVTKLNIKVLPTVAL  143 (211)
T ss_pred             eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhc---ccceEEEEecccCceeeeeeeeeEeeeEEE
Confidence            34444 47888888888888999999999999999999999999987   568999999999999999999999999999


Q ss_pred             ccCCCC
Q 018270          103 FPKGSL  108 (358)
Q Consensus       103 ~~~~~~  108 (358)
                      |.+|..
T Consensus       144 ~k~g~~  149 (211)
T KOG1672|consen  144 FKNGKT  149 (211)
T ss_pred             EEcCEE
Confidence            998863

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.13  E-value=2.8e-05  Score=59.09  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=67.5

Q ss_pred             hcCCCcEEEEEcCC----CCcccchh--hhhHHHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCCcccEEEEEe---C
Q 018270          156 LDKSKDVLVEFYAP----WCGHCKNL--APTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLKFFP---K  224 (358)
Q Consensus       156 ~~~~~~v~v~f~a~----~C~~c~~~--~~~~~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti~~~~---~  224 (358)
                      ....|.++|.++++    ||..|+..  .|.+.+.-+     .++++...|++.  ...++..+++.++|++.++.   +
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln-----~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~   88 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-----TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN   88 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH-----cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC
Confidence            35779999999999    89999876  333333322     468888888874  45799999999999999984   2


Q ss_pred             CCcceeeecCCCCHHHHHHHHHHhc
Q 018270          225 GNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       225 g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ......+..|..++++|...++...
T Consensus        89 ~~~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          89 RMTIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             ceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            2224567899999999999987653

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>TIGR03137 AhpC peroxiredoxin

Probab=98.13  E-value=1.3e-05  Score=66.91  Aligned_cols=89  Identities=17%  Similarity=0.136  Sum_probs=63.0

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------------------------chhhHhhc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------------HKSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (358)
                      .+++++|.|| +.||++|....+.|.++.+.+.+. .+.++.|.++.                         +.++++.|
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~  108 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF  108 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence            4688999999 999999999999999999988643 34455454432                         33567788


Q ss_pred             Ccc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270           93 GVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN  128 (358)
Q Consensus        93 ~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~  128 (358)
                      |+.      ..|+.+++++++.....+    ...+..+++.+.|+.
T Consensus       109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~  154 (187)
T TIGR03137       109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA  154 (187)
T ss_pred             CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            875      358888887766543332    123577888777754

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>TIGR03137 AhpC peroxiredoxin

Probab=98.12  E-value=2.5e-05  Score=65.13  Aligned_cols=89  Identities=19%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~  211 (358)
                      .+++++|.|| +.||++|....|.+.++.+.|... ++.++.|..+.                         ...+++.|
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~  108 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF  108 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence            5678999999 999999999999999999998633 34444443331                         23678888


Q ss_pred             CCC------cccEEEEEeCCCcceeeec----CCCCHHHHHHHHHH
Q 018270          212 GVS------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINE  247 (358)
Q Consensus       212 ~v~------~~Pti~~~~~g~~~~~~~~----g~~~~~~l~~~i~~  247 (358)
                      |+.      ..|+.+++...+.....+.    ..++.+++.+.|..
T Consensus       109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~  154 (187)
T TIGR03137       109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA  154 (187)
T ss_pred             CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            986      3588888876655444332    13578888887743

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.11  E-value=1.9e-05  Score=63.12  Aligned_cols=47  Identities=13%  Similarity=0.206  Sum_probs=35.6

Q ss_pred             CCCcE-EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH
Q 018270          158 KSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK  205 (358)
Q Consensus       158 ~~~~v-~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~  205 (358)
                      .++++ ++.|++.||++|+...|.+.++.+.+.. .++.++.|..+...
T Consensus        22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~~   69 (149)
T cd02970          22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESPE   69 (149)
T ss_pred             cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCHH
Confidence            33444 5555699999999999999999999963 45777777776443

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=2.7e-05  Score=67.47  Aligned_cols=115  Identities=17%  Similarity=0.366  Sum_probs=90.1

Q ss_pred             CCCCceEcCcccHHHHHhcCCC--cEEEEEcCC----CCcccchhhhhHHHHHHHhcCC------CCeEEEEEeCcccHH
Q 018270          139 VPSNVVVLTADNFDEIVLDKSK--DVLVEFYAP----WCGHCKNLAPTYEKVAAAFTLE------DDVVVANLDADKYKD  206 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~--~v~v~f~a~----~C~~c~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~~~  206 (358)
                      .++.|..+++++|.+++....+  .++|+|.|.    .|.-|++...+|.-+|..+..+      .++-|+.||.++.++
T Consensus        38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~  117 (331)
T KOG2603|consen   38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ  117 (331)
T ss_pred             CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence            3566899999999999964433  468888875    4999999999999999987533      268999999999999


Q ss_pred             HHHhcCCCcccEEEEEeCCCc---ceeeec---CCCCHHHHHHHHHHhcCCCC
Q 018270          207 LAEKYGVSGFPTLKFFPKGNK---DGEEYG---GGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       207 l~~~~~v~~~Pti~~~~~g~~---~~~~~~---g~~~~~~l~~~i~~~~~~~~  253 (358)
                      +.+++++++.|++++|++...   ....+.   -+..+|.+.+|+.+.+....
T Consensus       118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v  170 (331)
T KOG2603|consen  118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV  170 (331)
T ss_pred             HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence            999999999999999954322   222222   23569999999999876554

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.10  E-value=1.9e-05  Score=64.50  Aligned_cols=43  Identities=9%  Similarity=0.305  Sum_probs=35.8

Q ss_pred             CCCcEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270           39 QDRGALVEFYAPW-CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        39 ~~~~~lv~fya~~-c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      .+++++|.||+.| |++|....|.|.++++++.   .+.++.|.++.
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~   86 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL   86 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence            4689999999999 9999999999999998873   46666666653

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.09  E-value=8.6e-06  Score=63.17  Aligned_cols=85  Identities=25%  Similarity=0.505  Sum_probs=52.8

Q ss_pred             cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhc---CCCcccEEEEE
Q 018270          146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFF  222 (358)
Q Consensus       146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~---~v~~~Pti~~~  222 (358)
                      ++.+....+........++.|..+|||.|....|.+.++++..   +++.+-.+..+++.++.++|   |..++|+++++
T Consensus        28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~---p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~  104 (129)
T PF14595_consen   28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN---PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFL  104 (129)
T ss_dssp             --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH----TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE
T ss_pred             CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC---CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEE
Confidence            3444444443334556788899999999999999999999975   46777777777788877776   56679999999


Q ss_pred             eCCCcceeeec
Q 018270          223 PKGNKDGEEYG  233 (358)
Q Consensus       223 ~~g~~~~~~~~  233 (358)
                      ..++....++.
T Consensus       105 d~~~~~lg~wg  115 (129)
T PF14595_consen  105 DKDGKELGRWG  115 (129)
T ss_dssp             -TT--EEEEEE
T ss_pred             cCCCCEeEEEc
Confidence            77655444443

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.09  E-value=1.9e-05  Score=67.84  Aligned_cols=87  Identities=20%  Similarity=0.158  Sum_probs=67.5

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------chhhHhhcCccCCCeEEEccCCCCCc
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------HKSLCSKYGVQGYPTIQWFPKGSLEP  110 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~P~l~~~~~~~~~~  110 (358)
                      ++.-|++||.+.|++|+++.|.+..+++.+.  -.|.-+.+|..-         +...++++||..+|++++.++++...
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~  220 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV  220 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence            4578999999999999999999999999985  345555565532         23467899999999999998876442


Q ss_pred             c-cccCCCCHHHHHHHHhc
Q 018270          111 K-KYEGPRSTEALAEYVNN  128 (358)
Q Consensus       111 ~-~~~g~~~~~~i~~~i~~  128 (358)
                      . .-.|..+.++|.+-+..
T Consensus       221 ~pv~~G~iS~deL~~Ri~~  239 (248)
T PRK13703        221 RPLSYGFITQDDLAKRFLN  239 (248)
T ss_pred             EEEeeccCCHHHHHHHHHH
Confidence            2 23589999999876654

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.05  E-value=3.5e-05  Score=62.09  Aligned_cols=45  Identities=27%  Similarity=0.341  Sum_probs=35.6

Q ss_pred             CCCcEEEEEcCC-CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc
Q 018270          158 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK  203 (358)
Q Consensus       158 ~~~~v~v~f~a~-~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~  203 (358)
                      .+++++|.||+. ||+.|....+.+.++.+.+.. .++.++.|..+.
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~   74 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDK   74 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence            568899999976 688899999999999998863 357677776653

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.05  E-value=1.3e-05  Score=63.54  Aligned_cols=45  Identities=16%  Similarity=0.220  Sum_probs=38.3

Q ss_pred             CCCcEEEEEECCCChh-hhhhhHHHHHHHHHhhcCC--ceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCGH-CKKLAPEYEKLGASFKKAK--SVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~-C~~~~~~~~~~~~~~~~~~--~v~~~~vd~~   83 (358)
                      .+++++|.||++||++ |....+.+.++.+.++..+  ++.++.|..+
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            5789999999999998 9999999999999997542  5777777664

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.04  E-value=9e-06  Score=58.12  Aligned_cols=54  Identities=24%  Similarity=0.333  Sum_probs=41.8

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-----HHHHhcCCCcccEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKYGVSGFPTLK  220 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----~l~~~~~v~~~Pti~  220 (358)
                      ++.|+++||++|+...+.+.++.  .  .+.+.+..++.+.+.     .+.+.+|+.++|+++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i--~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~   59 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--V--KPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF   59 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--C--CCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence            47899999999999999999886  2  234677788776433     367778999999973

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.03  E-value=4.1e-05  Score=58.00  Aligned_cols=74  Identities=23%  Similarity=0.442  Sum_probs=49.8

Q ss_pred             hhHHHHh----cCCCcEEEEEEC-------CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-------hhHh--
Q 018270           31 DNFEKEV----GQDRGALVEFYA-------PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-------SLCS--   90 (358)
Q Consensus        31 ~~f~~~~----~~~~~~lv~fya-------~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~--   90 (358)
                      ++|.+.+    .++++++|.|++       +|||.|+...|.+.++-....  .+..++.|.+...+       .+-+  
T Consensus         6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~--~~~~lv~v~VG~r~~Wkdp~n~fR~~p   83 (119)
T PF06110_consen    6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP--ENARLVYVEVGDRPEWKDPNNPFRTDP   83 (119)
T ss_dssp             HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S--TTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred             HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC--CCceEEEEEcCCHHHhCCCCCCceEcc
Confidence            4555555    456889999996       599999999999998887754  45777777664222       2333  


Q ss_pred             hcCccCCCeEEEccCC
Q 018270           91 KYGVQGYPTIQWFPKG  106 (358)
Q Consensus        91 ~~~i~~~P~l~~~~~~  106 (358)
                      .+++.++||++-+..+
T Consensus        84 ~~~l~~IPTLi~~~~~   99 (119)
T PF06110_consen   84 DLKLKGIPTLIRWETG   99 (119)
T ss_dssp             CC---SSSEEEECTSS
T ss_pred             eeeeeecceEEEECCC
Confidence            5899999999999765

; PDB: 1V9W_A 1WOU_A.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.02  E-value=3e-05  Score=62.48  Aligned_cols=45  Identities=24%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             CCCcEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270           39 QDRGALVEFYAP-WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        39 ~~~~~lv~fya~-~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      .+++++|.||+. ||+.|....+.+.++.+.+++ ..+.++.|..+.
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~   74 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDK   74 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence            468899999975 688899999999999998875 347777776643

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=3.4e-05  Score=57.01  Aligned_cols=73  Identities=18%  Similarity=0.393  Sum_probs=56.0

Q ss_pred             hhHHHHh---cCCCcEEEEEEC--------CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-------hhhHhhc
Q 018270           31 DNFEKEV---GQDRGALVEFYA--------PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------KSLCSKY   92 (358)
Q Consensus        31 ~~f~~~~---~~~~~~lv~fya--------~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------~~l~~~~   92 (358)
                      ++|++.+   .+++-++|+|++        +|||.|.+..|.+.+.-+...  .++.|+.|++.+-       ..+.+..
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap--~~~~~v~v~VG~rp~Wk~p~n~FR~d~   90 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP--EDVHFVHVYVGNRPYWKDPANPFRKDP   90 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC--CceEEEEEEecCCCcccCCCCccccCC
Confidence            5566665   345559999997        799999999999998888554  6789999988643       3455566


Q ss_pred             Cc-cCCCeEEEccC
Q 018270           93 GV-QGYPTIQWFPK  105 (358)
Q Consensus        93 ~i-~~~P~l~~~~~  105 (358)
                      ++ .++||++=+..
T Consensus        91 ~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   91 GILTAVPTLLRWKR  104 (128)
T ss_pred             CceeecceeeEEcC
Confidence            66 89999998864

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.99  E-value=1.4e-05  Score=57.17  Aligned_cols=55  Identities=25%  Similarity=0.302  Sum_probs=41.8

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-----hhHhhcCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----SLCSKYGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~P~l~~  102 (358)
                      ++.|+++|||+|+.+.+.+.++.  .+  +.+.+..+|.+.+.     .+.+.+++.++|++++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i   60 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI   60 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            47899999999999999999876  22  33667777765443     2667789999999853

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.97  E-value=7.3e-05  Score=63.06  Aligned_cols=91  Identities=18%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             CCCcEE-EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------------------------ccHHHHH
Q 018270          158 KSKDVL-VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------------KYKDLAE  209 (358)
Q Consensus       158 ~~~~v~-v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------------------------~~~~l~~  209 (358)
                      .++.++ +.|++.||+.|....+.+.++..+|+.. ++.++.|.++                           .+..+++
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~  104 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR  104 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence            355554 4689999999999999999999988633 3444444333                           1237888


Q ss_pred             hcCCC------cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHhc
Q 018270          210 KYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEKC  249 (358)
Q Consensus       210 ~~~v~------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~~  249 (358)
                      .||+.      .+|+.+++.++++.....    .++++.+++...|+...
T Consensus       105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            88984      489999998776633322    45689999999987654

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.96  E-value=5.1e-05  Score=62.62  Aligned_cols=43  Identities=14%  Similarity=0.286  Sum_probs=36.7

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .+++++|.|||+||++|.+ .|.+.++.+++++ ..+.+..+.|.
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~-~gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD-QGFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh-CCeEEEEeecc
Confidence            4689999999999999975 8899999999975 35888888884

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.96  E-value=7.6e-05  Score=64.55  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=68.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------ccHHHHHhcCCCcccEEEEEeCCCcc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------KYKDLAEKYGVSGFPTLKFFPKGNKD  228 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------~~~~l~~~~~v~~~Pti~~~~~g~~~  228 (358)
                      .++.-++.||.+-|+.|.++.|++..+++.++  -.+..+.+|..         .+..+++++||..+|++++...+...
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~  226 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK  226 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence            45578999999999999999999999999994  23444444433         12568999999999999999877553


Q ss_pred             ee-eecCCCCHHHHHHHHHHhc
Q 018270          229 GE-EYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       229 ~~-~~~g~~~~~~l~~~i~~~~  249 (358)
                      .. .-.|..+.++|.+=|-...
T Consensus       227 ~~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       227 MSPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             EEEEeeccCCHHHHHHHHHHHH
Confidence            33 3467889999877665543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.96  E-value=4.6e-05  Score=60.94  Aligned_cols=45  Identities=11%  Similarity=0.176  Sum_probs=36.0

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      +.++++|.|| ++||+.|....|.+.++.+++.+ ..+.++.|..+.
T Consensus        27 g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d~   72 (149)
T cd03018          27 GRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVDS   72 (149)
T ss_pred             CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCCC
Confidence            3378888887 89999999999999999999874 357777776643

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.95  E-value=2.9e-05  Score=61.59  Aligned_cols=45  Identities=27%  Similarity=0.384  Sum_probs=37.6

Q ss_pred             CCCcEEEEEcCCCCcc-cchhhhhHHHHHHHhcCCC--CeEEEEEeCc
Q 018270          158 KSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLED--DVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~-c~~~~~~~~~la~~~~~~~--~v~~~~vd~~  202 (358)
                      .+++++|.||++||++ |....+.+.++.+.+..++  ++.++.|..+
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            5789999999999998 9999999999999997542  5777766654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.92  E-value=7.1e-05  Score=62.12  Aligned_cols=90  Identities=14%  Similarity=0.125  Sum_probs=65.4

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-------------------------cchhhHhhc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-------------------------EHKSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~~   92 (358)
                      .++++++.|| +.||+.|....+.|.+..+++... .+.+..|..+                         .+.++++.|
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y  108 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  108 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence            4578999999 999999999999999999998643 3444444433                         244678888


Q ss_pred             Cc----cCC--CeEEEccCCCCCcccc----cCCCCHHHHHHHHhcc
Q 018270           93 GV----QGY--PTIQWFPKGSLEPKKY----EGPRSTEALAEYVNNE  129 (358)
Q Consensus        93 ~i----~~~--P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~~  129 (358)
                      |+    .+.  |+.+++++++.....+    ...++.+++.+.+...
T Consensus       109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            88    356  9999998777542222    2346889998888653

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.92  E-value=0.00013  Score=60.46  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~  211 (358)
                      .++++++.|| +.||+.|....+.+.++..+|... ++.++-|..+.                         +..+++.|
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y  108 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  108 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence            4678899999 999999999999999999998632 34444444432                         34788899


Q ss_pred             CC----Ccc--cEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270          212 GV----SGF--PTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  248 (358)
Q Consensus       212 ~v----~~~--Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~  248 (358)
                      |+    .+.  |+.+++.+++.....+    ..+++.+++...|...
T Consensus       109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            98    355  9999998666633332    2347899998888543

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.90  E-value=3.7e-05  Score=59.64  Aligned_cols=71  Identities=21%  Similarity=0.434  Sum_probs=45.2

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhh---cCccCCCeEEEccCCCCCcccc
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSK---YGVQGYPTIQWFPKGSLEPKKY  113 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~---~~i~~~P~l~~~~~~~~~~~~~  113 (358)
                      .+..++-|..+|||.|....|.+.++++..   +.+.+-.+.-+++.++..+   .|...+|++++++.++....++
T Consensus        41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~---p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w  114 (129)
T PF14595_consen   41 KPYNILVITETWCGDCARNVPVLAKIAEAN---PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW  114 (129)
T ss_dssp             S-EEEEEE--TT-HHHHHHHHHHHHHHHH----TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE
T ss_pred             CCcEEEEEECCCchhHHHHHHHHHHHHHhC---CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE
Confidence            445778899999999999999999999975   3455555555666666554   4688999999998765543444

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.89  E-value=8.9e-05  Score=58.88  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=35.0

Q ss_pred             CCCcEEEEEcCCC-CcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~-C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .++++++.||++| |++|+...|.+.++.+.+.   ++.++.|+.+
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d   67 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD   67 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence            5789999999998 6999999999999999873   4666666664

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.89  E-value=0.0004  Score=54.02  Aligned_cols=108  Identities=17%  Similarity=0.309  Sum_probs=79.7

Q ss_pred             CCeEEcChhhH-HHHhcCCCcEEEEEECCC---Ch-hh-hhhhHHHHHHHHHhhcCCc-eEEEEEeCccchhhHhhcCcc
Q 018270           23 DDVVVLTEDNF-EKEVGQDRGALVEFYAPW---CG-HC-KKLAPEYEKLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQ   95 (358)
Q Consensus        23 ~~v~~l~~~~f-~~~~~~~~~~lv~fya~~---c~-~C-~~~~~~~~~~~~~~~~~~~-v~~~~vd~~~~~~l~~~~~i~   95 (358)
                      ..+++|+.+++ ++.-.++..=+|-|. |.   |. .+ ......+.++|+.++  ++ +.|+.+|.++...+.+.||+.
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l-~~~~d~~~e~~~~~~~~l~~vAk~~k--gk~i~Fv~vd~~~~~~~~~~fgl~   78 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFL-PHILDCQASCRNKYLEILKSVAEKFK--KKPWGWLWTEAGAQLDLEEALNIG   78 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEc-CccccCCHHHHHHHHHHHHHHHHHhc--CCcEEEEEEeCcccHHHHHHcCCC
Confidence            35778887665 444544443344454 42   22 23 456888999999998  55 999999999998899999995


Q ss_pred             --CCCeEEEccCCCCCccc-ccCCCCHHHHHHHHhccCCCCc
Q 018270           96 --GYPTIQWFPKGSLEPKK-YEGPRSTEALAEYVNNEGGTNV  134 (358)
Q Consensus        96 --~~P~l~~~~~~~~~~~~-~~g~~~~~~i~~~i~~~~~~~~  134 (358)
                        ++|++++++..+.. +. +.|..+.+++.+|+++....+.
T Consensus        79 ~~~~P~v~i~~~~~~K-Y~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          79 GFGYPAMVAINFRKMK-FATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             ccCCCEEEEEecccCc-cccccCccCHHHHHHHHHHHHcCCc
Confidence              59999999886532 44 6799999999999999766554

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK15000 peroxidase; Provisional

Probab=97.88  E-value=0.00012  Score=61.51  Aligned_cols=89  Identities=13%  Similarity=0.313  Sum_probs=65.3

Q ss_pred             CCCcEEEEEcCC-CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~a~-~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .++.+++.||+. ||+.|....+.+.+++++|+.. ++.++.+.++.                            ...++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia  111 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ  111 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence            578999999995 9999999999999999999643 45555555542                            12566


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHH
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINE  247 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~  247 (358)
                      +.||+.      ++|+.+++.+.+.....+.|    +++.+++...++.
T Consensus       112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            778876      68888888866664444333    4788888888864

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.88  E-value=4.5e-05  Score=60.59  Aligned_cols=43  Identities=9%  Similarity=0.261  Sum_probs=36.2

Q ss_pred             CCCcEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270           39 QDRGALVEFYAPW-CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        39 ~~~~~lv~fya~~-c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      .+++++|.||+.| |++|+...|.+.++.++++   .+.++.|+.+.
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~   68 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL   68 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC
Confidence            4688999999998 6999999999999999874   46777777754

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.86  E-value=0.00019  Score=54.18  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=70.7

Q ss_pred             EcCcccHHHHHhcCCCcEEEEEc----CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc----c
Q 018270          145 VLTADNFDEIVLDKSKDVLVEFY----APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG----F  216 (358)
Q Consensus       145 ~l~~~~f~~~~~~~~~~v~v~f~----a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~----~  216 (358)
                      +++.+|.....   ..+.++.|+    ++.-..-....+.+.++|+.++. +++.|+.+|.++.....+.||++.    +
T Consensus         3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~~~~l~~fgl~~~~~~~   78 (111)
T cd03073           3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD-RKLNFAVADKEDFSHELEEFGLDFSGGEK   78 (111)
T ss_pred             eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence            45667776664   333344433    22222345678899999999963 469999999998888999999984    9


Q ss_pred             cEEEEEeCCCcceeeecCCC-CHHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKDGEEYGGGR-DLEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~-~~~~l~~~i~~~  248 (358)
                      |+++++..++ ..+...+.. +.++|.+|+++.
T Consensus        79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence            9999987543 233356777 999999999764

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.85  E-value=0.00012  Score=52.47  Aligned_cols=77  Identities=26%  Similarity=0.396  Sum_probs=55.1

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcC--CCcccEEEEEeCCCcceeeecCC
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYG--VSGFPTLKFFPKGNKDGEEYGGG  235 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~--v~~~Pti~~~~~g~~~~~~~~g~  235 (358)
                      -++.|+.+||++|+.....++++...+   .++.+..+|++.+    .++....+  +.++|+++  -+|. .   ..  
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~-~---ig--   70 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQK-H---IG--   70 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCE-E---Ec--
Confidence            478899999999999999999998764   3566777777643    35666565  47899975  3442 1   12  


Q ss_pred             CCHHHHHHHHHHhcC
Q 018270          236 RDLEDFVSFINEKCG  250 (358)
Q Consensus       236 ~~~~~l~~~i~~~~~  250 (358)
                       ..+++.++++.+++
T Consensus        71 -g~~~~~~~~~~~~~   84 (85)
T PRK11200         71 -GCTDFEAYVKENLG   84 (85)
T ss_pred             -CHHHHHHHHHHhcc
Confidence             35788888877654

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.85  E-value=7.3e-05  Score=63.06  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=63.5

Q ss_pred             CCCcEEE-EEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------------cchhhHh
Q 018270           39 QDRGALV-EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------------EHKSLCS   90 (358)
Q Consensus        39 ~~~~~lv-~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~   90 (358)
                      .++.++| .|+++||+.|....+.|.+..++++.. .+.++.|.++                           .+.++++
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~  104 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR  104 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence            3565554 689999999999999999999988743 3445544443                           2345677


Q ss_pred             hcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhcc
Q 018270           91 KYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNNE  129 (358)
Q Consensus        91 ~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~~  129 (358)
                      .||+.      .+|+.+++++++......    .++++.+++...++..
T Consensus       105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            78874      479999998777542222    4568899998888764

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.85  E-value=8.7e-05  Score=59.87  Aligned_cols=81  Identities=26%  Similarity=0.379  Sum_probs=70.7

Q ss_pred             ceEc-CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          143 VVVL-TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       143 v~~l-~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      ..++ +...|-+.+ ..+.-|++.||-|.-..|+-+...++.||+.+   ....|++||+...+=|+.+++|.-+|++.+
T Consensus        68 y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h---~eTrFikvnae~~PFlv~kL~IkVLP~v~l  143 (211)
T KOG1672|consen   68 YEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH---VETRFIKVNAEKAPFLVTKLNIKVLPTVAL  143 (211)
T ss_pred             EEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhc---ccceEEEEecccCceeeeeeeeeEeeeEEE
Confidence            4445 467777766 57788999999999999999999999999986   467899999999999999999999999999


Q ss_pred             EeCCCc
Q 018270          222 FPKGNK  227 (358)
Q Consensus       222 ~~~g~~  227 (358)
                      |.+|..
T Consensus       144 ~k~g~~  149 (211)
T KOG1672|consen  144 FKNGKT  149 (211)
T ss_pred             EEcCEE
Confidence            999853

>KOG3414 consensus Component of the U4/U6

Probab=97.85  E-value=0.00011  Score=54.83  Aligned_cols=76  Identities=18%  Similarity=0.330  Sum_probs=67.0

Q ss_pred             hhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           30 EDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        30 ~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      ....++++  ...+.++|.|-.+|.|.|.++...+..+++.+.  +-..++.+|.++-+++.+-|++...|++++|-++.
T Consensus        11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs--nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k   88 (142)
T KOG3414|consen   11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK   88 (142)
T ss_pred             HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHh--hceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence            45566777  567889999999999999999999999999997  66888999999999999999999999999886554

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.84  E-value=0.00013  Score=58.39  Aligned_cols=43  Identities=16%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             CCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          159 SKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       159 ~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      +++++|.|| ++||+.|....|.+.++.+.+.. .++.++.|..+
T Consensus        28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d   71 (149)
T cd03018          28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVD   71 (149)
T ss_pred             CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence            377777777 99999999999999999999963 35666666554

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.82  E-value=0.00011  Score=58.00  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=35.9

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .+++++|.|| +.||++|....|.+.++...+. ..++.++.|..+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~-~~~~~~i~is~d   65 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA-KGGAEVLGVSVD   65 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEeCC
Confidence            6788999999 7899999999999999999985 335666666654

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.80  E-value=9.4e-05  Score=58.42  Aligned_cols=45  Identities=18%  Similarity=0.308  Sum_probs=37.4

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      .+++++|.|| +.||+.|....|.+.++.++++. ..+.++.|..+.
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d~   66 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVDS   66 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence            5789999999 78999999999999999999853 457777776653

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.80  E-value=0.00023  Score=53.65  Aligned_cols=100  Identities=14%  Similarity=0.156  Sum_probs=73.5

Q ss_pred             EEcChhhHHHHhcCCCcEEEEEE----CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC----C
Q 018270           26 VVLTEDNFEKEVGQDRGALVEFY----APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG----Y   97 (358)
Q Consensus        26 ~~l~~~~f~~~~~~~~~~lv~fy----a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~----~   97 (358)
                      ..+|.+|.....  ..+.++.||    +..-..-..+.+.+.++|+.+++ +++.|+.+|.++.....+.||+..    +
T Consensus         2 ~~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~~~~l~~fgl~~~~~~~   78 (111)
T cd03073           2 GHRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD-RKLNFAVADKEDFSHELEEFGLDFSGGEK   78 (111)
T ss_pred             CeeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence            356778887764  334444444    23334557789999999999983 369999999998877889999984    9


Q ss_pred             CeEEEccCCCCCcccccCCC-CHHHHHHHHhcc
Q 018270           98 PTIQWFPKGSLEPKKYEGPR-STEALAEYVNNE  129 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~-~~~~i~~~i~~~  129 (358)
                      |.+.+...++ ..+...+.. +.++|.+|+++.
T Consensus        79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence            9999987544 224456777 999999999753

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.78  E-value=0.00016  Score=70.76  Aligned_cols=93  Identities=18%  Similarity=0.274  Sum_probs=74.2

Q ss_pred             EEcChhhHHHHhcCCCcEEEE-EECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           26 VVLTEDNFEKEVGQDRGALVE-FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        26 ~~l~~~~f~~~~~~~~~~lv~-fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      ..++++..+.+-+=++++-|. |.+++|++|......+.+++...   ++|..-.+|....++++++|+|-++|++++  
T Consensus       461 ~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~---~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--  535 (555)
T TIGR03143       461 QPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN---PNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--  535 (555)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC---CCceEEEEECcccHHHHHhCCceecCEEEE--
Confidence            455665555544445676555 57999999999999999998875   468888999999999999999999999987  


Q ss_pred             CCCCCcccccCCCCHHHHHHHH
Q 018270          105 KGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      ++.   ..+.|..+.+++.+||
T Consensus       536 ~~~---~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       536 DDQ---QVYFGKKTIEEMLELI  554 (555)
T ss_pred             CCE---EEEeeCCCHHHHHHhh
Confidence            332   4577988999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.75  E-value=0.00036  Score=50.02  Aligned_cols=96  Identities=17%  Similarity=0.351  Sum_probs=73.7

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCcc----CCCe-EE
Q 018270           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQ----GYPT-IQ  101 (358)
Q Consensus        29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P~-l~  101 (358)
                      +..+|..++.-...++|.|..+. ..-......+.++|+..++.  -.++-|||..  .+++|+++.+.    .-|. +.
T Consensus         8 d~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~--gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk   84 (112)
T cd03067           8 DHKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQ--GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK   84 (112)
T ss_pred             chHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCc--eeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence            34789998977788888887664 44556667889999999844  5667788876  78999999998    5553 45


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      -|.+|. .+..|+...+..++..|+..
T Consensus        85 HYKdG~-fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          85 HYKDGD-FHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             cccCCC-ccccccchhhHHHHHHHhhC
Confidence            555555 45899999999999999874

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PRK15000 peroxidase; Provisional

Probab=97.75  E-value=0.00015  Score=61.01  Aligned_cols=89  Identities=13%  Similarity=0.240  Sum_probs=63.2

Q ss_pred             CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      ++++++|.||+ .||+.|....+.|.+..++++.. ++.++.|.++.                            +.+++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia  111 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ  111 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence            57899999999 59999999999999999999753 35555555542                            22456


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~  128 (358)
                      +.||+.      ..|..+++++.+.....+    .-.++.+++.+.++.
T Consensus       112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            667776      578888887766543322    234677888877764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.75  E-value=0.00028  Score=68.56  Aligned_cols=98  Identities=11%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             EEcChhhHHHHhcCCCcE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           26 VVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        26 ~~l~~~~f~~~~~~~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      ..|+++..+.+-+=++++ +..|++++||+|......+.+++...   +.|..-.+|....++++++|++.++|++++  
T Consensus       101 ~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~---~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--  175 (517)
T PRK15317        101 PKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN---PNITHTMIDGALFQDEVEARNIMAVPTVFL--  175 (517)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC---CCceEEEEEchhCHhHHHhcCCcccCEEEE--
Confidence            455555554444434454 77899999999999999999998864   578899999999999999999999999976  


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      ++.   ..+.|..+.+++.+.+.+..+
T Consensus       176 ~~~---~~~~g~~~~~~~~~~~~~~~~  199 (517)
T PRK15317        176 NGE---EFGQGRMTLEEILAKLDTGAA  199 (517)
T ss_pred             CCc---EEEecCCCHHHHHHHHhcccc
Confidence            332   458899999999999876544

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.72  E-value=0.00025  Score=61.00  Aligned_cols=89  Identities=17%  Similarity=0.122  Sum_probs=68.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------ccHHHHHhcCCCcccEEEEEeCCCcc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------KYKDLAEKYGVSGFPTLKFFPKGNKD  228 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------~~~~l~~~~~v~~~Pti~~~~~g~~~  228 (358)
                      .+..-++.||.+-|++|.++.|++..+++.++  -.+..+.+|..         .+...++++||..+|++++...+...
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~  219 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS  219 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence            35578999999999999999999999999985  24555555542         13457789999999999999877654


Q ss_pred             eee-ecCCCCHHHHHHHHHHh
Q 018270          229 GEE-YGGGRDLEDFVSFINEK  248 (358)
Q Consensus       229 ~~~-~~g~~~~~~l~~~i~~~  248 (358)
                      ... -.|..+.++|.+=+...
T Consensus       220 ~~pv~~G~iS~deL~~Ri~~v  240 (248)
T PRK13703        220 VRPLSYGFITQDDLAKRFLNV  240 (248)
T ss_pred             EEEEeeccCCHHHHHHHHHHH
Confidence            433 46788999987766544

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.70  E-value=0.00014  Score=62.67  Aligned_cols=83  Identities=25%  Similarity=0.462  Sum_probs=59.1

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEE----------------------------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG----------------------------------------   78 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~----------------------------------------   78 (358)
                      +++..++.|.-+.||+|+++.+++.++.+.  + -.|.+.                                        
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            456789999999999999999998876541  0 011111                                        


Q ss_pred             --EEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           79 --KVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        79 --~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                        ..+.+++.++++++||+++|+++ +.+|    ....|..+.+.|.++|.+.
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G----~~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG----TLVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCC----eEeeCCCCHHHHHHHHHHc
Confidence              11112345688999999999999 4444    2458999999999998753

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.67  E-value=0.00016  Score=49.80  Aligned_cols=67  Identities=16%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHh----cCCCcccEEEEEeCCCcceeeecCCCCH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK----YGVSGFPTLKFFPKGNKDGEEYGGGRDL  238 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~----~~v~~~Pti~~~~~g~~~~~~~~g~~~~  238 (358)
                      ++.|+++||++|..+.+.+.+.        ++.+..++++.+....+.    .++.++|++++  +|    .... +.+.
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~----~~i~-g~~~   66 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD----EHLS-GFRP   66 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC----EEEe-cCCH
Confidence            5789999999999988877653        344555666654433333    36889999875  23    2223 3455


Q ss_pred             HHHHHH
Q 018270          239 EDFVSF  244 (358)
Q Consensus       239 ~~l~~~  244 (358)
                      +.|.++
T Consensus        67 ~~l~~~   72 (73)
T cd02976          67 DKLRAL   72 (73)
T ss_pred             HHHHhh
Confidence            566554

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.65  E-value=0.00011  Score=60.65  Aligned_cols=81  Identities=17%  Similarity=0.264  Sum_probs=55.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--------cc---HHHHH-hcCCCcccEEEEEeCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------KY---KDLAE-KYGVSGFPTLKFFPKG  225 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--------~~---~~l~~-~~~v~~~Pti~~~~~g  225 (358)
                      .+++++|.|||+||++|++ .|.++++.+.|+. .++.++.+.|+        ..   ..+++ +|+++ +|.+-=..- 
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~-~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~dv-   99 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD-QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIEV-   99 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh-CCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEcc-
Confidence            5789999999999999975 8899999999964 46888888773        22   34554 57764 663321211 


Q ss_pred             CcceeeecCCCCHHHHHHHHHHhcC
Q 018270          226 NKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       226 ~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                              .+.....+-+|+.+.++
T Consensus       100 --------nG~~~~pl~~~Lk~~~~  116 (183)
T PRK10606        100 --------NGEGRHPLYQKLIAAAP  116 (183)
T ss_pred             --------CCCCCCHHHHHHHHhCC
Confidence                    12335567788887665

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.63  E-value=0.00027  Score=48.64  Aligned_cols=67  Identities=18%  Similarity=0.291  Sum_probs=43.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhh----cCccCCCeEEEccCCCCCcccccCCCCH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSK----YGVQGYPTIQWFPKGSLEPKKYEGPRST  119 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~P~l~~~~~~~~~~~~~~g~~~~  119 (358)
                      ++.|+++||++|..+.+.+.+.        .+.+..+|.+.+....+.    .++.++|++.+.  +    ....| .+.
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~--~----~~i~g-~~~   66 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIG--D----EHLSG-FRP   66 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEEC--C----EEEec-CCH
Confidence            5789999999999988877652        245556676655544333    368899999862  2    12333 455


Q ss_pred             HHHHHH
Q 018270          120 EALAEY  125 (358)
Q Consensus       120 ~~i~~~  125 (358)
                      +.+.++
T Consensus        67 ~~l~~~   72 (73)
T cd02976          67 DKLRAL   72 (73)
T ss_pred             HHHHhh
Confidence            566554

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=5.5e-05  Score=62.63  Aligned_cols=75  Identities=23%  Similarity=0.494  Sum_probs=65.1

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG  235 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~  235 (358)
                      .+.+..++.||++||.+|+++...+..+++.+   .++.+++++.+..++++..+.+...|.+.++..|.+ ..+..|.
T Consensus        15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~---~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~-v~~l~~~   89 (227)
T KOG0911|consen   15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF---KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEK-VDRLSGA   89 (227)
T ss_pred             hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh---hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchh-hhhhhcc
Confidence            47788999999999999999999999999988   578999999999999999999999999999977643 3334443

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.62  E-value=0.00029  Score=59.56  Aligned_cols=86  Identities=17%  Similarity=0.225  Sum_probs=59.5

Q ss_pred             cEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------chhhHhhcCc
Q 018270           42 GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSKYGV   94 (358)
Q Consensus        42 ~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~i   94 (358)
                      .+++.|+++||+.|....+.+.++.++++.. .+.++.|.++.                           +..+++.||+
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~  106 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM  106 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence            3456799999999999999999999999753 46666665542                           2356777886


Q ss_pred             c----C----CCeEEEccCCCCCccccc----CCCCHHHHHHHHhc
Q 018270           95 Q----G----YPTIQWFPKGSLEPKKYE----GPRSTEALAEYVNN  128 (358)
Q Consensus        95 ~----~----~P~l~~~~~~~~~~~~~~----g~~~~~~i~~~i~~  128 (358)
                      .    +    .|+.+++++++.....+.    ..++.+++.+.+..
T Consensus       107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~  152 (203)
T cd03016         107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA  152 (203)
T ss_pred             ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            5    2    245777777765433322    25678888887765

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.60  E-value=0.00019  Score=51.42  Aligned_cols=76  Identities=24%  Similarity=0.268  Sum_probs=53.6

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch----hhHhhcC--ccCCCeEEEccCCCCCcccccCC
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----SLCSKYG--VQGYPTIQWFPKGSLEPKKYEGP  116 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~P~l~~~~~~~~~~~~~~g~  116 (358)
                      -++.|+.+||++|.+....++++..++   ..+.+..+|.+.+.    ++.+..+  +..+|++++  +|. .   . | 
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~-~---i-g-   70 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQK-H---I-G-   70 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCE-E---E-c-
Confidence            467899999999999999999998765   34677777777542    4555455  478999864  442 1   1 2 


Q ss_pred             CCHHHHHHHHhccC
Q 018270          117 RSTEALAEYVNNEG  130 (358)
Q Consensus       117 ~~~~~i~~~i~~~~  130 (358)
                       ..+++.+++....
T Consensus        71 -g~~~~~~~~~~~~   83 (85)
T PRK11200         71 -GCTDFEAYVKENL   83 (85)
T ss_pred             -CHHHHHHHHHHhc
Confidence             3467777776554

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.60  E-value=0.00056  Score=57.79  Aligned_cols=87  Identities=17%  Similarity=0.290  Sum_probs=61.1

Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHHHhcCC
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAEKYGV  213 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~v  213 (358)
                      .+++.|++.||+.|....+.+.+++..|+. .++.++.|.++.                           +..+++.||+
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~-~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~  106 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKK-RNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM  106 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence            456689999999999999999999999964 345555554442                           2367888887


Q ss_pred             C----c----ccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHh
Q 018270          214 S----G----FPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK  248 (358)
Q Consensus       214 ~----~----~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~  248 (358)
                      .    +    .|+.+++.++++....+.+    +++.+++...|...
T Consensus       107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            5    2    3457777666554433333    57888898888664

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.59  E-value=0.00035  Score=60.20  Aligned_cols=83  Identities=23%  Similarity=0.400  Sum_probs=59.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEE----------------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA----------------------------------------  197 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~----------------------------------------  197 (358)
                      .++.+++.|..+.||+|+.+++.+.++.+.   .-.+.+.                                        
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            467789999999999999998887766431   0111111                                        


Q ss_pred             --EEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          198 --NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       198 --~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                        ..+++++..+++++||++.|+++ +.+|    ....|..+.++|.++|++.
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G----~~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG----TLVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCC----eEeeCCCCHHHHHHHHHHc
Confidence              11112334899999999999988 6666    3457999999999999753

>PRK13189 peroxiredoxin; Provisional

Probab=97.57  E-value=0.00071  Score=57.88  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=62.7

Q ss_pred             CCC-cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHHH
Q 018270          158 KSK-DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE  209 (358)
Q Consensus       158 ~~~-~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~~  209 (358)
                      .++ .+++.|++.||+.|....+.+.+++..|+. .++.++.|.++.                           ...+++
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~-~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~  112 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE-LNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK  112 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence            455 455678899999999999999999999963 344444444331                           236778


Q ss_pred             hcCCC-------cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270          210 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  248 (358)
Q Consensus       210 ~~~v~-------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~  248 (358)
                      .||+.       ..|+.+++.+.+......    ..+++.+++...|+..
T Consensus       113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            88875       468888887666532222    2467888998888754

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.56  E-value=0.00046  Score=60.11  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=64.0

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      +++++++.|| +.||+.|....+.|.+..+++...+ +.+..|.++.                            +.+++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia  175 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS  175 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence            4567888888 8999999999999999999987432 4444444332                            24577


Q ss_pred             hhcCcc-----CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhcc
Q 018270           90 SKYGVQ-----GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNNE  129 (358)
Q Consensus        90 ~~~~i~-----~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~~  129 (358)
                      +.||+.     ..|+.+++++++.....+    ...++.+++.+.|+..
T Consensus       176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            888875     479999998776543322    3467888888887653

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.53  E-value=0.00087  Score=56.99  Aligned_cols=90  Identities=14%  Similarity=0.206  Sum_probs=64.6

Q ss_pred             CCCc-EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHHH
Q 018270          158 KSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE  209 (358)
Q Consensus       158 ~~~~-v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~~  209 (358)
                      .++. +++.|++.||+.|....+.+.+++.+|... ++.++.+.++.                           +..+++
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~  105 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSN  105 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHH
Confidence            3454 578999999999999999999999999633 45555555542                           125788


Q ss_pred             hcCCC-------cccEEEEEeCCCcceee--e--cCCCCHHHHHHHHHHh
Q 018270          210 KYGVS-------GFPTLKFFPKGNKDGEE--Y--GGGRDLEDFVSFINEK  248 (358)
Q Consensus       210 ~~~v~-------~~Pti~~~~~g~~~~~~--~--~g~~~~~~l~~~i~~~  248 (358)
                      .||+.       ..|+.+++.++++....  |  ..+++.+++...|...
T Consensus       106 ~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        106 QLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             HcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            88873       57999999876663332  2  2347889999888753

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.52  E-value=0.00095  Score=58.16  Aligned_cols=90  Identities=16%  Similarity=0.258  Sum_probs=63.3

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .++.+++.|| +.||++|....+.+.++.++|+.. ++.++.|.+|.                            +..++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia  175 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS  175 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence            4566777776 899999999999999999999633 34444444332                            23688


Q ss_pred             HhcCCC-----cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270          209 EKYGVS-----GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  248 (358)
Q Consensus       209 ~~~~v~-----~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~  248 (358)
                      +.||+.     ..|+.+++.+++.....+    ..+++.+++...|...
T Consensus       176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            889985     479999998666633332    3457888888887643

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.52  E-value=0.00022  Score=60.05  Aligned_cols=77  Identities=23%  Similarity=0.392  Sum_probs=54.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEE----------------------------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG----------------------------------------   78 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~----------------------------------------   78 (358)
                      .++..++.|+.+.||+|+++.+.+.+.    .  +++.+.                                        
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~  149 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKPN----A--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP  149 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhc----c--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence            357899999999999999999988751    1  112111                                        


Q ss_pred             -----EEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270           79 -----KVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus        79 -----~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                           ..+.+++..+++++||.++|+++ +.+|.    .+.|..+.+++.++|
T Consensus       150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~L  197 (197)
T cd03020         150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEALL  197 (197)
T ss_pred             CccccCchHHHHHHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhhC
Confidence                 11222345688899999999997 55552    367888888887764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.52  E-value=0.00023  Score=53.95  Aligned_cols=67  Identities=19%  Similarity=0.445  Sum_probs=43.7

Q ss_pred             cCCCcEEEEEcC-------CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-------HHHH--hcCCCcccEEE
Q 018270          157 DKSKDVLVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAE--KYGVSGFPTLK  220 (358)
Q Consensus       157 ~~~~~v~v~f~a-------~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------~l~~--~~~v~~~Pti~  220 (358)
                      ..+++++|.|++       +|||.|....|.+++.-....  .+..++.+.+.+-+       .+..  +++++++||++
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~--~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi   94 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP--ENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLI   94 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S--TTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEE
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC--CCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEE
Confidence            356788999985       499999999999998777653  35556555543221       2333  58999999999


Q ss_pred             EEeCC
Q 018270          221 FFPKG  225 (358)
Q Consensus       221 ~~~~g  225 (358)
                      -+..+
T Consensus        95 ~~~~~   99 (119)
T PF06110_consen   95 RWETG   99 (119)
T ss_dssp             ECTSS
T ss_pred             EECCC
Confidence            99765

; PDB: 1V9W_A 1WOU_A.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.50  E-value=0.00041  Score=58.35  Aligned_cols=83  Identities=19%  Similarity=0.322  Sum_probs=54.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHh------------------------------------cCCC---CeEEEE
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF------------------------------------TLED---DVVVAN  198 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~------------------------------------~~~~---~v~~~~  198 (358)
                      .++..++.|+.+.|++|+++.+.+.+....+                                    ....   ....+.
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~  155 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCD  155 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccC
Confidence            4678999999999999999887776410000                                    0000   011122


Q ss_pred             EeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       199 vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      .+.+.+..++.++||.+.|+++ +.+|.    ...|..+.++|.++|
T Consensus       156 ~~i~~~~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~L  197 (197)
T cd03020         156 NPVAANLALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEALL  197 (197)
T ss_pred             chHHHHHHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhhC
Confidence            2233445899999999999997 76663    357888888887764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.48  E-value=0.0011  Score=56.46  Aligned_cols=90  Identities=12%  Similarity=0.168  Sum_probs=62.8

Q ss_pred             CCCcEE-EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHHH
Q 018270          158 KSKDVL-VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE  209 (358)
Q Consensus       158 ~~~~v~-v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~~  209 (358)
                      .++.++ +.|++.||+.|....+.+.+++.+|+.. ++.++.+.++.                           +..+++
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~  110 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK  110 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence            455544 5889999999999999999999999633 45555555442                           125677


Q ss_pred             hcCCC-------cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270          210 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  248 (358)
Q Consensus       210 ~~~v~-------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~  248 (358)
                      .||+-       ..|+.+++.+++.....+    .-+++.+++...|...
T Consensus       111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78863       368888887766633322    2347999999988754

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.47  E-value=0.00081  Score=48.22  Aligned_cols=76  Identities=24%  Similarity=0.342  Sum_probs=51.9

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----cHHHHHhcCC--CcccEEEEEeCCCcceeeecCCC
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGV--SGFPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----~~~l~~~~~v--~~~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      ++.|..+||++|.+....+.++....   ..+.+..+|++.    ..++.+.+|-  .++|++++  +|.    ...   
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~---~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~----~ig---   69 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIER---ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK----HVG---   69 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCccc---CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE----Eec---
Confidence            57899999999999999888876543   245666667653    3357777774  78998743  341    122   


Q ss_pred             CHHHHHHHHHHhcC
Q 018270          237 DLEDFVSFINEKCG  250 (358)
Q Consensus       237 ~~~~l~~~i~~~~~  250 (358)
                      ..++|.++++++.+
T Consensus        70 G~~dl~~~~~~~~~   83 (86)
T TIGR02183        70 GCTDFEQLVKENFD   83 (86)
T ss_pred             CHHHHHHHHHhccc
Confidence            35788888877544

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.45  E-value=0.0014  Score=49.79  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=59.5

Q ss_pred             hhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe-EEEc
Q 018270           30 EDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT-IQWF  103 (358)
Q Consensus        30 ~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~-l~~~  103 (358)
                      .-..++++  ..++.++|.|-.+|-+.|.++...+.++++..+  +-..++.||.++-+++.+.|.+. -|. +.+|
T Consensus         8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~--~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF   81 (133)
T PF02966_consen    8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK--NFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF   81 (133)
T ss_dssp             HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred             cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh--cceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence            45677777  678999999999999999999999999999997  67899999999999999999999 665 5555

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.40  E-value=0.0022  Score=51.92  Aligned_cols=85  Identities=22%  Similarity=0.373  Sum_probs=63.1

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--cc--H---------------------------
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KY--K---------------------------  205 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~--~---------------------------  205 (358)
                      ...+.+++.|+...|++|..+.+.+.++-+.+-..+++.+...+.-  ..  .                           
T Consensus        10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   89 (162)
T PF13462_consen   10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ   89 (162)
T ss_dssp             TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            3457789999999999999999999999888854567777666542  10  0                           


Q ss_pred             -------------------------------------HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          206 -------------------------------------DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       206 -------------------------------------~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                                                           .++.++||.+.||+++  +|.    .+.|..+.+++.+.|++
T Consensus        90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~----~~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGK----YVVGPYTIEELKELIDK  162 (162)
T ss_dssp             HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTC----EEETTTSHHHHHHHHHH
T ss_pred             hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCE----EeCCCCCHHHHHHHHcC
Confidence                                                 5667789999999888  452    25788999999988864

...

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.39  E-value=0.0015  Score=63.45  Aligned_cols=96  Identities=14%  Similarity=0.217  Sum_probs=75.8

Q ss_pred             EEcChhhHHHHhcCCCc-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           26 VVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        26 ~~l~~~~f~~~~~~~~~-~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      ..|+++..+.+-+=+++ -+-.|+++.||+|......+.+++...   +.|..-.+|....++++++|++.++|++++  
T Consensus       102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~---p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--  176 (515)
T TIGR03140       102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN---PNISHTMIDGALFQDEVEALGIQGVPAVFL--  176 (515)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC---CCceEEEEEchhCHHHHHhcCCcccCEEEE--
Confidence            55666655544443444 477899999999999999998888874   568888899999999999999999999986  


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhcc
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++.   ..+.|..+.+++.+.+...
T Consensus       177 ~~~---~~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       177 NGE---EFHNGRMDLAELLEKLEET  198 (515)
T ss_pred             CCc---EEEecCCCHHHHHHHHhhc
Confidence            332   4578989999888887655

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK13189 peroxiredoxin; Provisional

Probab=97.38  E-value=0.00087  Score=57.34  Aligned_cols=89  Identities=12%  Similarity=0.154  Sum_probs=59.8

Q ss_pred             CCCc-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------chhhHh
Q 018270           39 QDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCS   90 (358)
Q Consensus        39 ~~~~-~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~   90 (358)
                      .++. +|+.|+++||+.|....+.|.+.+++++.. ++.++.|.++.                           +.++++
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~  112 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK  112 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence            3564 455778999999999999999999998743 35555554432                           234567


Q ss_pred             hcCcc-------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270           91 KYGVQ-------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN  128 (358)
Q Consensus        91 ~~~i~-------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~  128 (358)
                      .||+.       ..|+.+++++++......    ...++.+++...|+.
T Consensus       113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a  161 (222)
T PRK13189        113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA  161 (222)
T ss_pred             HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            77764       457788887766442221    245677888877765

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.34  E-value=0.001  Score=48.95  Aligned_cols=92  Identities=18%  Similarity=0.251  Sum_probs=64.0

Q ss_pred             ChhhHHHHhcC--CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCcc-CCCeEE
Q 018270           29 TEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQ-GYPTIQ  101 (358)
Q Consensus        29 ~~~~f~~~~~~--~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~-~~P~l~  101 (358)
                      |.+++++++..  .+|++|+=.+..||-+......|++......  +.+.++.+|.-+.++    ++++|||. .-|.++
T Consensus         6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~--~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i   83 (105)
T PF11009_consen    6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESP--DEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI   83 (105)
T ss_dssp             SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred             CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCC--ccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence            46778888844  8899999999999999999999999998765  348999999988764    67899987 669999


Q ss_pred             EccCCCCCcccccCCCCHHHH
Q 018270          102 WFPKGSLEPKKYEGPRSTEAL  122 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i  122 (358)
                      ++++|.-....-.+..+.+.|
T Consensus        84 li~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   84 LIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EEETTEEEEEEEGGG-SHHHH
T ss_pred             EEECCEEEEECccccCCHHhc
Confidence            999986443333345555544

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.34  E-value=0.00041  Score=49.15  Aligned_cols=51  Identities=24%  Similarity=0.406  Sum_probs=38.9

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----HHHHHhcCCCcccEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVSGFPTL  219 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~~Pti  219 (358)
                      ++.|+++||++|+.+.+.+.++...      +.+..++.+.+     ..+.+..|..++|++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v   57 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK------PAVVELDQHEDGSEIQDYLQELTGQRTVPNV   57 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence            5789999999999999999987553      45667776543     235566788899986

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.34  E-value=0.00049  Score=50.92  Aligned_cols=93  Identities=17%  Similarity=0.242  Sum_probs=63.9

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCC--ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~--c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      .....++.++++..+..+...+++|..+.  ++.|....=.+-++.+.+.  +.+..+.++-..+..+..+||+..+|++
T Consensus         9 ~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~--~~~~~avv~~~~e~~L~~r~gv~~~PaL   86 (107)
T PF07449_consen    9 HGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFP--GRFRGAVVARAAERALAARFGVRRWPAL   86 (107)
T ss_dssp             -TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTST--TSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred             cCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhh--CccceEEECchhHHHHHHHhCCccCCeE
Confidence            46778889999999977665555554432  3344444446777777776  5677777787788999999999999999


Q ss_pred             EEccCCCCCcccccCCCC
Q 018270          101 QWFPKGSLEPKKYEGPRS  118 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~  118 (358)
                      ++|+.|... ....|.++
T Consensus        87 vf~R~g~~l-G~i~gi~d  103 (107)
T PF07449_consen   87 VFFRDGRYL-GAIEGIRD  103 (107)
T ss_dssp             EEEETTEEE-EEEESSST
T ss_pred             EEEECCEEE-EEecCeec
Confidence            999987533 44445443

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.33  E-value=0.0037  Score=46.41  Aligned_cols=95  Identities=13%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             eEc-CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          144 VVL-TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       144 ~~l-~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      ..+ +..++++++ . .+..++|.|+..-   -......|.++|..++  .++.|+.   ..+.++...+++. .|++++
T Consensus         3 ~~i~~~~~~e~~~-~~~~~~~Vvg~f~~~---~~~~~~~F~~vA~~~R--~d~~F~~---~~~~~~~~~~~~~-~~~i~l   72 (102)
T cd03066           3 EIINSERELQAFE-NIEDDIKLIGYFKSE---DSEHYKAFEEAAEEFH--PYIKFFA---TFDSKVAKKLGLK-MNEVDF   72 (102)
T ss_pred             eEcCCHHHHHHHh-cccCCeEEEEEECCC---CCHHHHHHHHHHHhhh--cCCEEEE---ECcHHHHHHcCCC-CCcEEE
Confidence            344 445678887 4 5566666666542   2245678999999886  4566655   3455677888875 799999


Q ss_pred             EeCCCcceeee-cCCCCHHHHHHHHHHh
Q 018270          222 FPKGNKDGEEY-GGGRDLEDFVSFINEK  248 (358)
Q Consensus       222 ~~~g~~~~~~~-~g~~~~~~l~~~i~~~  248 (358)
                      +++.......| .|..+.+.|.+||...
T Consensus        73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          73 YEPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            97644455678 7888999999999753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.32  E-value=0.0013  Score=43.58  Aligned_cols=51  Identities=29%  Similarity=0.449  Sum_probs=38.5

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~  102 (358)
                      ++.|..+||++|+.....|++        ..+.+-.+|.+.+++    +.+..|..++|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~--------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE--------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH--------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH--------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            578999999999999888842        336677777776643    333449999999986

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.32  E-value=0.0013  Score=55.97  Aligned_cols=88  Identities=13%  Similarity=0.158  Sum_probs=60.3

Q ss_pred             CCc-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------chhhHhh
Q 018270           40 DRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSK   91 (358)
Q Consensus        40 ~~~-~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~   91 (358)
                      ++. +|+.|+++||+.|....+.|.++.+++... .+.++.+.++.                           +.++++.
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            455 467899999999999999999999998743 35666665543                           2345667


Q ss_pred             cCcc-------CCCeEEEccCCCCCccc--c--cCCCCHHHHHHHHhc
Q 018270           92 YGVQ-------GYPTIQWFPKGSLEPKK--Y--EGPRSTEALAEYVNN  128 (358)
Q Consensus        92 ~~i~-------~~P~l~~~~~~~~~~~~--~--~g~~~~~~i~~~i~~  128 (358)
                      ||+.       ..|+.+++++++.....  |  ...++.+++.+.++.
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~  154 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA  154 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            7763       56888888776644222  2  224677777777764

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.32  E-value=0.0018  Score=51.78  Aligned_cols=31  Identities=39%  Similarity=0.662  Sum_probs=26.9

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHh
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF  188 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~  188 (358)
                      ..+.+++.|+.++|++|+.+.|.+.++...+
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~   34 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED   34 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence            4577899999999999999999999877655

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.30  E-value=0.0039  Score=46.18  Aligned_cols=80  Identities=24%  Similarity=0.357  Sum_probs=57.3

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCC---cccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWC---GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C---~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      ...++..+++.++ ......+ .|++.-|   +.+....-++=+|.+.|.  +.+..+.++.+.+..|..+||+..+|++
T Consensus        11 ~~~vd~~~ld~~l-~~~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~--~~~~~avv~~~~e~~L~~r~gv~~~PaL   86 (107)
T PF07449_consen   11 WPRVDADTLDAFL-AAPGDAV-LFFAGDPARFPETADVAVILPELVKAFP--GRFRGAVVARAAERALAARFGVRRWPAL   86 (107)
T ss_dssp             EEEE-CCCHHHHH-HCCSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTST--TSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred             CeeechhhHHHHH-hCCCcEE-EEECCCCCcCcccccceeEcHHHHHhhh--CccceEEECchhHHHHHHHhCCccCCeE
Confidence            5678899999998 4444444 4544444   444444557778888885  4667777777788899999999999999


Q ss_pred             EEEeCCC
Q 018270          220 KFFPKGN  226 (358)
Q Consensus       220 ~~~~~g~  226 (358)
                      ++|++|.
T Consensus        87 vf~R~g~   93 (107)
T PF07449_consen   87 VFFRDGR   93 (107)
T ss_dssp             EEEETTE
T ss_pred             EEEECCE
Confidence            9999884

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.30  E-value=0.00082  Score=44.48  Aligned_cols=51  Identities=24%  Similarity=0.424  Sum_probs=37.1

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF  221 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~~  221 (358)
                      ++.|+.+||++|+.....+++.        ++.+-.+|+++++    .+.+..|..++|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            4789999999999988877543        3556666666543    4555559999999775

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.29  E-value=0.00072  Score=47.88  Aligned_cols=79  Identities=28%  Similarity=0.401  Sum_probs=59.1

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ceeeecCCCCHHHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDF  241 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~~~~~g~~~~~~l  241 (358)
                      +++|..+.|+-|......+.+++...    .+.+-.+|+++++.+.++|+. .+|.+.+-..++. ......+..+.+.|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L   76 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL   76 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence            67899999999999998888765543    588999999999999999997 5997554432111 23455678899999


Q ss_pred             HHHHH
Q 018270          242 VSFIN  246 (358)
Q Consensus       242 ~~~i~  246 (358)
                      .+||+
T Consensus        77 ~~~L~   81 (81)
T PF05768_consen   77 RAWLE   81 (81)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.25  E-value=0.0035  Score=46.73  Aligned_cols=91  Identities=22%  Similarity=0.361  Sum_probs=63.1

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC-
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG-  225 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g-  225 (358)
                      +.++.++++ .....++|-|+..-   -......|.++|..++  +++.|+.   ..+..+.+++++  .|++++|++. 
T Consensus         7 s~~~l~~f~-~~~~~~Vvg~f~~~---~~~~~~~F~~vA~~~R--~d~~F~~---~~~~~~~~~~~~--~~~ivl~~p~~   75 (104)
T cd03069           7 TEAEFEKFL-SDDDASVVGFFEDE---DSKLLSEFLKAADTLR--ESFRFAH---TSDKQLLEKYGY--GEGVVLFRPPR   75 (104)
T ss_pred             CHHHHHHHh-ccCCcEEEEEEcCC---CchHHHHHHHHHHhhh--hcCEEEE---EChHHHHHhcCC--CCceEEEechh
Confidence            345567766 45666676776552   1246778999999885  4567765   344677889998  6888888431 


Q ss_pred             -----CcceeeecCCCCHHHHHHHHHHh
Q 018270          226 -----NKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       226 -----~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                           ......|.|..+.++|.+||...
T Consensus        76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          76 LSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hhcccCcccccccCcCCHHHHHHHHHhh
Confidence                 22345699999999999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.25  E-value=0.003  Score=53.18  Aligned_cols=90  Identities=20%  Similarity=0.262  Sum_probs=62.3

Q ss_pred             CCCcEEEEEcC-CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~a-~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .++.+++.||+ .||+.|....+.+.++++.|... ++.++.|.++.                            ..+++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia  113 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA  113 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence            46788889995 88999999999999999999643 45555555442                            12577


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHHh
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  248 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~  248 (358)
                      +.||+.      .+|+.+++.+.+.....+    ..+++.++++..|...
T Consensus       114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            888874      368888887666533322    2346777777777543

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.24  E-value=0.0011  Score=46.92  Aligned_cols=80  Identities=24%  Similarity=0.366  Sum_probs=60.3

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC-CCcccccCCCCHHH
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEA  121 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~-~~~~~~~g~~~~~~  121 (358)
                      .++.|..+.|+-|..+...+..+....    .+.+-.||.++++++..+|+. .+|.+.+=...+ .......+..+.+.
T Consensus         1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~   75 (81)
T PF05768_consen    1 TLTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ   75 (81)
T ss_dssp             -EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred             CEEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence            368899999999999999998876543    488999999999999999995 899987754221 11244567889999


Q ss_pred             HHHHHh
Q 018270          122 LAEYVN  127 (358)
Q Consensus       122 i~~~i~  127 (358)
                      +.+||+
T Consensus        76 L~~~L~   81 (81)
T PF05768_consen   76 LRAWLE   81 (81)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.23  E-value=0.00077  Score=48.36  Aligned_cols=76  Identities=20%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----hhhHhhcCc--cCCCeEEEccCCCCCcccccCCC
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGV--QGYPTIQWFPKGSLEPKKYEGPR  117 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i--~~~P~l~~~~~~~~~~~~~~g~~  117 (358)
                      ++.|..+|||+|.+....+.++....   ..+.+..+|.+.+    .++.+..+-  ..+|++++  ++.     +-|  
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~---~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~-----~ig--   69 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIER---ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK-----HVG--   69 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCccc---CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE-----Eec--
Confidence            57889999999999999999876543   2356666676542    346666664  78999954  332     112  


Q ss_pred             CHHHHHHHHhccCC
Q 018270          118 STEALAEYVNNEGG  131 (358)
Q Consensus       118 ~~~~i~~~i~~~~~  131 (358)
                      ..+++.+++.+..+
T Consensus        70 G~~dl~~~~~~~~~   83 (86)
T TIGR02183        70 GCTDFEQLVKENFD   83 (86)
T ss_pred             CHHHHHHHHHhccc
Confidence            34778888776544

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.0012  Score=48.90  Aligned_cols=65  Identities=20%  Similarity=0.463  Sum_probs=50.0

Q ss_pred             CCCcEEEEEcC--------CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-------HHHHHhcCC-CcccEEEE
Q 018270          158 KSKDVLVEFYA--------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------KDLAEKYGV-SGFPTLKF  221 (358)
Q Consensus       158 ~~~~v~v~f~a--------~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------~~l~~~~~v-~~~Pti~~  221 (358)
                      +++.++|+|++        +|||.|....|.+.+.-+...  .++.|+.+++.+-       -.+....++ +++||++=
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap--~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr  101 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP--EDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR  101 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC--CceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence            45559999986        499999999999999888654  5788888887643       245666677 88999988


Q ss_pred             EeC
Q 018270          222 FPK  224 (358)
Q Consensus       222 ~~~  224 (358)
                      +..
T Consensus       102 w~~  104 (128)
T KOG3425|consen  102 WKR  104 (128)
T ss_pred             EcC
Confidence            864

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.22  E-value=0.0046  Score=49.96  Aligned_cols=44  Identities=25%  Similarity=0.326  Sum_probs=34.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC   82 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~   82 (358)
                      ..+++++.|+...||+|..+.+.+.++.+.+-+.+.|.+...+.
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~   54 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV   54 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence            45778999999999999999999999999883336677775544

...

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.22  E-value=0.0022  Score=55.91  Aligned_cols=83  Identities=19%  Similarity=0.295  Sum_probs=58.3

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe--------------------------------------
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD--------------------------------------   81 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd--------------------------------------   81 (358)
                      .+.+++.|.-+.||+|+++.+.+..+.+.    ++|.+..+-                                      
T Consensus       117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~  192 (251)
T PRK11657        117 APRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK  192 (251)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence            45678899999999999999998776543    222221110                                      


Q ss_pred             --------C----ccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHh
Q 018270           82 --------C----DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus        82 --------~----~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~  127 (358)
                              |    +++..+++++|++++|++++-+..+ .+....|..+.++|.+.+.
T Consensus       193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence                    0    0123467789999999999987544 3356789999999988775

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.21  E-value=0.0018  Score=55.16  Aligned_cols=90  Identities=12%  Similarity=0.110  Sum_probs=61.6

Q ss_pred             CCCcEE-EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------chhhHh
Q 018270           39 QDRGAL-VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCS   90 (358)
Q Consensus        39 ~~~~~l-v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~   90 (358)
                      .+++++ +.|+++||+.|....+.|.+.+++++.. ++.++.+.++.                           +.++++
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~  110 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK  110 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence            355555 4788999999999999999999999743 35555555542                           234566


Q ss_pred             hcCcc-------CCCeEEEccCCCCCccc--c--cCCCCHHHHHHHHhcc
Q 018270           91 KYGVQ-------GYPTIQWFPKGSLEPKK--Y--EGPRSTEALAEYVNNE  129 (358)
Q Consensus        91 ~~~i~-------~~P~l~~~~~~~~~~~~--~--~g~~~~~~i~~~i~~~  129 (358)
                      .||+.       ..|+.+++++++.....  +  .-.++.+++...|+..
T Consensus       111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            77763       35788888877654222  1  2357888888888653

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.16  E-value=0.0011  Score=46.99  Aligned_cols=52  Identities=23%  Similarity=0.403  Sum_probs=38.3

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-----hhhHhhcCccCCCeEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----KSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~P~l~  101 (358)
                      ++.|+++|||+|..+.+.+.++...      ..+..++.+.+     ..+.+..|..++|+++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~   58 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF   58 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence            5789999999999999999987653      34555665543     2355667889999974

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.14  E-value=0.0025  Score=53.67  Aligned_cols=89  Identities=15%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.||+ .||++|....+.+.++++++... .+.++.|+++.                            +.+++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia  113 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA  113 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence            36788899995 78999999999999999998753 46666665542                            22456


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~  128 (358)
                      +.||+.      .+|+.+++++++.....+    ...++.+++.+.|..
T Consensus       114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a  162 (199)
T PTZ00253        114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA  162 (199)
T ss_pred             HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence            677764      357777777666432211    234566667666654

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.14  E-value=0.0023  Score=45.94  Aligned_cols=96  Identities=22%  Similarity=0.354  Sum_probs=69.7

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCC----cccE-E
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVS----GFPT-L  219 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~----~~Pt-i  219 (358)
                      +..+|.+++ .....|+|+|..+--.. ......+.++|+..++.+  .++.|||.+  ...||+++.|.    .-|. +
T Consensus         8 d~KdfKKLL-RTr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~g--T~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L   83 (112)
T cd03067           8 DHKDFKKLL-RTRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQG--TIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL   83 (112)
T ss_pred             chHHHHHHH-hhcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCce--eEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence            457888888 56677888888664222 223458889999887554  566677765  78999999998    4554 4


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      .-|.+|. -...|.-..+...+++|+++
T Consensus        84 kHYKdG~-fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          84 KHYKDGD-FHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             hcccCCC-ccccccchhhHHHHHHHhhC
Confidence            4677773 56678888999999999864

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>KOG3414 consensus Component of the U4/U6

Probab=97.13  E-value=0.0044  Score=46.40  Aligned_cols=82  Identities=20%  Similarity=0.346  Sum_probs=66.1

Q ss_pred             ccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc
Q 018270          149 DNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  227 (358)
Q Consensus       149 ~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~  227 (358)
                      ...++.+. ...+.+++-|.-.|-+.|-++...+.+.++...  .-..+.-+|+++-+++.+-|++...||+.+|-++.-
T Consensus        12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs--nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH   89 (142)
T KOG3414|consen   12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH   89 (142)
T ss_pred             HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHh--hceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence            44455553 345788999999999999999999999999885  346788899999999999999999999998876654


Q ss_pred             ceeee
Q 018270          228 DGEEY  232 (358)
Q Consensus       228 ~~~~~  232 (358)
                      ....+
T Consensus        90 mkiD~   94 (142)
T KOG3414|consen   90 MKIDL   94 (142)
T ss_pred             EEEee
Confidence            44444

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.10  E-value=0.012  Score=43.58  Aligned_cols=95  Identities=15%  Similarity=0.274  Sum_probs=68.7

Q ss_pred             EEc-ChhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           26 VVL-TEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        26 ~~l-~~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      ..+ +.++++.+++ .+..++|-|+..--.   .....|.++|..++  .++.|+...   +.++...+++. .|.++++
T Consensus         3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R--~d~~F~~~~---~~~~~~~~~~~-~~~i~l~   73 (102)
T cd03066           3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFH--PYIKFFATF---DSKVAKKLGLK-MNEVDFY   73 (102)
T ss_pred             eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhh--cCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence            344 5566888888 788888888876433   45678899999886  457776544   35666777765 6999999


Q ss_pred             cCCCCCcccc-cCCCCHHHHHHHHhcc
Q 018270          104 PKGSLEPKKY-EGPRSTEALAEYVNNE  129 (358)
Q Consensus       104 ~~~~~~~~~~-~g~~~~~~i~~~i~~~  129 (358)
                      ++.......| .|..+.+.|.+||...
T Consensus        74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          74 EPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            7633344678 7888999999999754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.07  E-value=0.009  Score=44.50  Aligned_cols=91  Identities=23%  Similarity=0.392  Sum_probs=66.9

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC--
Q 018270           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG--  106 (358)
Q Consensus        29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~--  106 (358)
                      +.++++.++..++.++|-|+..--.   .....|.++|..++  .++.|+...   +..+.+.+++  .|++++|++.  
T Consensus         7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R--~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~   76 (104)
T cd03069           7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLR--ESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRL   76 (104)
T ss_pred             CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhh--hcCEEEEEC---hHHHHHhcCC--CCceEEEechhh
Confidence            4566778787888888888876433   46788889999886  457776555   3567788888  7888888541  


Q ss_pred             ----CCCcccccCCCCHHHHHHHHhcc
Q 018270          107 ----SLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       107 ----~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                          ......|.|..+.+.|.+||...
T Consensus        77 ~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          77 SNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hcccCcccccccCcCCHHHHHHHHHhh
Confidence                12235689988999999999754

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.02  E-value=0.0015  Score=45.98  Aligned_cols=55  Identities=16%  Similarity=0.314  Sum_probs=38.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---HHHHHhcCCCcccEEE
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---KDLAEKYGVSGFPTLK  220 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---~~l~~~~~v~~~Pti~  220 (358)
                      ....-++.|+.+||++|+.....+.+.        ++.+-.+|++.+   ..+.+..|...+|.++
T Consensus         5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~   62 (79)
T TIGR02190         5 RKPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF   62 (79)
T ss_pred             CCCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence            345568899999999999998888654        233444555433   4566667889999875

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=97.02  E-value=0.00048  Score=59.96  Aligned_cols=128  Identities=23%  Similarity=0.358  Sum_probs=94.0

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-CccchhhHhhcCccCCCeEEEccCCCCCcccccCC
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP  116 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~  116 (358)
                      ++..++-+.||+.|||..+...|.++-....+.   .+....++ ...-++...+|++.+.|++.+....  -+..|.|.
T Consensus        74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~---~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t--~~~~~~~~  148 (319)
T KOG2640|consen   74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS---SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT--CPASYRGE  148 (319)
T ss_pred             ccCCcccccchhcccCcccccCcccchhhhhcc---ccccccHHHHhhcccchhccccccCCcceeeccc--cchhhccc
Confidence            346778999999999999999999998888775   23333332 2244678899999999999998765  34789999


Q ss_pred             CCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHH
Q 018270          117 RSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA  187 (358)
Q Consensus       117 ~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~  187 (358)
                      ++.+++.+|..+.++....          ++.       .+...+....+|.+||++-.-..|...-+...
T Consensus       149 r~l~sLv~fy~~i~~~~v~----------ie~-------~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~  202 (319)
T KOG2640|consen  149 RDLASLVNFYTEITPMSVL----------IEI-------LDCTSCLEPVRYVPEGGPTILLAPDGNLFTWA  202 (319)
T ss_pred             ccHHHHHHHHHhhccchhc----------ccc-------cCcccceeeeEeccccCcccccCcCCCcchhc
Confidence            9999999999887652110          110       12233788999999999888777765555443

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.93  E-value=0.0019  Score=44.01  Aligned_cols=50  Identities=22%  Similarity=0.324  Sum_probs=35.8

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLK  220 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~  220 (358)
                      ++.|+++||++|+...+.+.+..        +.+..+|++.+.    .+.+..+...+|+++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~   55 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF   55 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            57899999999999998888663        445566666544    344455777889764

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=96.88  E-value=0.0034  Score=53.22  Aligned_cols=41  Identities=17%  Similarity=0.507  Sum_probs=32.6

Q ss_pred             CCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeC
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDC   82 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~   82 (358)
                      +++.+|+|+...||||.++.+.+   ..+.+.+.  +++.+..+..
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~--~~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP--EGTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCC--CCCeEEEecc
Confidence            57889999999999999999976   78888876  4455555544

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=96.85  E-value=0.0084  Score=52.33  Aligned_cols=84  Identities=14%  Similarity=0.277  Sum_probs=57.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC------------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA------------------------------------  201 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~------------------------------------  201 (358)
                      ..+.+++.|+.+.|++|+++++.+.++.+.    +++.+..+-.                                    
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~  191 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL  191 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence            456789999999999999998776654332    1122111100                                    


Q ss_pred             --------------cccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          202 --------------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       202 --------------~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                                    +++..+..++||++.|++++-+..+ .+....|..++++|.+.+.
T Consensus       192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence                          0122588889999999988876433 5556789999999988763

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.83  E-value=0.0023  Score=44.08  Aligned_cols=66  Identities=14%  Similarity=0.255  Sum_probs=43.4

Q ss_pred             EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhc---CCCcccEEEEEeCCCcceeeecCCCCHHH
Q 018270          164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFFPKGNKDGEEYGGGRDLED  240 (358)
Q Consensus       164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~---~v~~~Pti~~~~~g~~~~~~~~g~~~~~~  240 (358)
                      ..|..++|++|+.....+.+.        ++.+-.+|+++++...+.+   |..++|++++  +|.    ..-|+.+++.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~----~~~~G~~~~~   67 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD----LSWSGFRPDK   67 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC----cEEeccCHHH
Confidence            578889999999988877642        4556667777665544444   8788998644  332    1334566665


Q ss_pred             HHH
Q 018270          241 FVS  243 (358)
Q Consensus       241 l~~  243 (358)
                      |.+
T Consensus        68 ~~~   70 (72)
T TIGR02194        68 LKA   70 (72)
T ss_pred             HHh
Confidence            543

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.82  E-value=0.0038  Score=43.01  Aligned_cols=66  Identities=17%  Similarity=0.242  Sum_probs=45.2

Q ss_pred             EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhc---CccCCCeEEEccCCCCCcccccCCCCHHH
Q 018270           45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKY---GVQGYPTIQWFPKGSLEPKKYEGPRSTEA  121 (358)
Q Consensus        45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~P~l~~~~~~~~~~~~~~g~~~~~~  121 (358)
                      +.|..++|++|+.....|++        ..+.+-.+|.+++++....+   |..++|++++  +|.    ..-|+.+.+.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~--------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~----~~~~G~~~~~   67 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE--------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD----LSWSGFRPDK   67 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC----cEEeccCHHH
Confidence            56788999999999988873        34667778888776555544   8889999865  232    1234456665


Q ss_pred             HHH
Q 018270          122 LAE  124 (358)
Q Consensus       122 i~~  124 (358)
                      |.+
T Consensus        68 ~~~   70 (72)
T TIGR02194        68 LKA   70 (72)
T ss_pred             HHh
Confidence            554

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.80  E-value=0.0038  Score=42.47  Aligned_cols=51  Identities=27%  Similarity=0.346  Sum_probs=36.9

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~  102 (358)
                      ++.|+++||++|+...+.+.+..        +.+..+|...+.+    +.+..+...+|++++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~   56 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI   56 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            56788999999999999888553        4555677766543    344457788898753

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.76  E-value=0.005  Score=43.27  Aligned_cols=55  Identities=18%  Similarity=0.295  Sum_probs=39.8

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc---hhhHhhcCccCCCeEEE
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---KSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~P~l~~  102 (358)
                      .+.-++.|..+||++|......|.+.        .+.+-.+|.+++   .++.+..|...+|.+.+
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i   63 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI   63 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence            34457789999999999999988742        244555666554   34555678899999964

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.75  E-value=0.0024  Score=44.87  Aligned_cols=49  Identities=14%  Similarity=0.400  Sum_probs=33.8

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTL  219 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti  219 (358)
                      ++.|+.+||++|......+++..        +.+-.+|++.++    ++.+..|..++|++
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~~--------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i   53 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSKG--------VTFTEIRVDGDPALRDEMMQRSGRRTVPQI   53 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHcC--------CCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence            36788999999999998887642        334444555443    34445577889986

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.67  E-value=0.013  Score=41.32  Aligned_cols=71  Identities=11%  Similarity=0.125  Sum_probs=49.3

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHH---HhcCCCcccEEEEEeCCCcceeeecCCCCHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA---EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  239 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~---~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~  239 (358)
                      +..|..+||++|......+.+.        ++.|-.+|++++++..   ...|...+|++++  ++     ..-++.+.+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-----~~~~Gf~~~   67 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-----LSWSGFRPD   67 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-----EEEecCCHH
Confidence            6788999999999988777542        4666677777655433   3457778998854  22     123478888


Q ss_pred             HHHHHHHHh
Q 018270          240 DFVSFINEK  248 (358)
Q Consensus       240 ~l~~~i~~~  248 (358)
                      .|.+.++..
T Consensus        68 ~l~~~~~~~   76 (81)
T PRK10329         68 MINRLHPAP   76 (81)
T ss_pred             HHHHHHHhh
Confidence            888887654

>PHA03050 glutaredoxin; Provisional

Probab=96.62  E-value=0.0064  Score=45.53  Aligned_cols=63  Identities=16%  Similarity=0.231  Sum_probs=40.6

Q ss_pred             HHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---c----hhhHhhcCccCCCeEEE
Q 018270           33 FEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---H----KSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        33 f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---~----~~l~~~~~i~~~P~l~~  102 (358)
                      .++.+++++  ++.|..+|||+|......|.+..-..   ..+.  .+|.++   .    ..+.+..|...+|++++
T Consensus         6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~--~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI   75 (108)
T PHA03050          6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR---GAYE--IVDIKEFKPENELRDYFEQITGGRTVPRIFF   75 (108)
T ss_pred             HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc---CCcE--EEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence            344555544  67789999999999998887654321   1233  344443   2    23555568889999954

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.59  E-value=0.0072  Score=43.82  Aligned_cols=59  Identities=31%  Similarity=0.399  Sum_probs=42.9

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC--cc------------------------------chhhHhh
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC--DE------------------------------HKSLCSK   91 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~--~~------------------------------~~~l~~~   91 (358)
                      ++.|+.+.||+|..+.+.+.++.....  +++.+.....  ..                              +...+.+
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADD--GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA   78 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcC--CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            468999999999999999999975544  3454443332  21                              1235677


Q ss_pred             cCccCCCeEEEcc
Q 018270           92 YGVQGYPTIQWFP  104 (358)
Q Consensus        92 ~~i~~~P~l~~~~  104 (358)
                      +|+.++|++++..
T Consensus        79 ~g~~g~Pt~v~~~   91 (98)
T cd02972          79 LGVTGTPTFVVNG   91 (98)
T ss_pred             cCCCCCCEEEECC
Confidence            8999999999865

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PHA03050 glutaredoxin; Provisional

Probab=96.57  E-value=0.005  Score=46.11  Aligned_cols=55  Identities=13%  Similarity=0.168  Sum_probs=37.5

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-c----cHHHHHhcCCCcccEE
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-K----YKDLAEKYGVSGFPTL  219 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~----~~~l~~~~~v~~~Pti  219 (358)
                      -++.|..+|||+|+.....+.+..-..   ..+....++.. .    ...+.+..|..++|++
T Consensus        14 ~V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I   73 (108)
T PHA03050         14 KVTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI   73 (108)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence            378999999999999988887764322   23445555431 1    2346666788899987

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.57  E-value=0.006  Score=42.23  Aligned_cols=50  Identities=18%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCC-cccEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVS-GFPTLK  220 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~-~~Pti~  220 (358)
                      ++.|..+||++|......+.+.        ++.+-.+|++.++    .+.+..|.. ++|+++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~   56 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF   56 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence            5688999999999988877753        3445556666543    344455766 899763

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.53  E-value=0.007  Score=41.76  Aligned_cols=49  Identities=16%  Similarity=0.354  Sum_probs=35.7

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTL  219 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti  219 (358)
                      ++.|+.+||++|+.....+++.        ++.+..+|++.++    ++.+..+-..+|++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v   55 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQI   55 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            6789999999999988877753        3445556666544    46666677889986

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.49  E-value=0.0065  Score=44.05  Aligned_cols=59  Identities=32%  Similarity=0.424  Sum_probs=42.7

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe--Ccc------------------------------cHHHHHh
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD--ADK------------------------------YKDLAEK  210 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd--~~~------------------------------~~~l~~~  210 (358)
                      +..|+.+.|++|..+.+.+.++.....  +++.+....  ...                              +..++..
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADD--GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA   78 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcC--CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            367999999999999999999875543  344444433  221                              1246778


Q ss_pred             cCCCcccEEEEEe
Q 018270          211 YGVSGFPTLKFFP  223 (358)
Q Consensus       211 ~~v~~~Pti~~~~  223 (358)
                      +|+.++|++++..
T Consensus        79 ~g~~g~Pt~v~~~   91 (98)
T cd02972          79 LGVTGTPTFVVNG   91 (98)
T ss_pred             cCCCCCCEEEECC
Confidence            8999999998875

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.48  E-value=0.0043  Score=45.71  Aligned_cols=57  Identities=19%  Similarity=0.315  Sum_probs=36.2

Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-H----HHHHhcCCCcccEEEEEeCC
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-K----DLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-~----~l~~~~~v~~~Pti~~~~~g  225 (358)
                      .-++.|..+|||+|.+....+.+..-      .+....+|.+.. .    .+.+..|...+|.+  |-+|
T Consensus         8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i------~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g   69 (99)
T TIGR02189         8 KAVVIFSRSSCCMCHVVKRLLLTLGV------NPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG   69 (99)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC------CCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence            34788999999999999887776532      234455543322 2    23444467889986  4444

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.48  E-value=0.0096  Score=43.87  Aligned_cols=57  Identities=19%  Similarity=0.236  Sum_probs=36.2

Q ss_pred             HHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh-------hHhhcCccCCCeEE
Q 018270           35 KEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS-------LCSKYGVQGYPTIQ  101 (358)
Q Consensus        35 ~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-------l~~~~~i~~~P~l~  101 (358)
                      +.+++++  ++.|..+|||+|.+....|.+..        +.+-.+|.+++++       +.+..|...+|+++
T Consensus         3 ~~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf   66 (99)
T TIGR02189         3 RMVSEKA--VVIFSRSSCCMCHVVKRLLLTLG--------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF   66 (99)
T ss_pred             hhhccCC--EEEEECCCCHHHHHHHHHHHHcC--------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence            3454433  66788999999999988776542        3333455544422       33344678999984

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.48  E-value=0.011  Score=40.71  Aligned_cols=51  Identities=16%  Similarity=0.239  Sum_probs=38.0

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~  102 (358)
                      ++.|+.+||++|+.....|++        ..+.+-.+|.++++.    +.+..+-..+|++++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~--------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i   57 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE--------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF   57 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            567889999999999888884        235566778776654    555567788999854

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=96.47  E-value=0.02  Score=42.21  Aligned_cols=93  Identities=24%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCC-cccEEE
Q 018270          147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVS-GFPTLK  220 (358)
Q Consensus       147 ~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~-~~Pti~  220 (358)
                      +.+++++++.. ..++++++=.++.|+-.......|++......  +++.++.+|.-+++    .++++|||. .-|.++
T Consensus         6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~--~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i   83 (105)
T PF11009_consen    6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESP--DEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI   83 (105)
T ss_dssp             SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred             CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCC--ccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence            45677887743 36788888889999999998888888888764  23778888876554    688999997 589999


Q ss_pred             EEeCCCcceeeecCCCCHHHH
Q 018270          221 FFPKGNKDGEEYGGGRDLEDF  241 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l  241 (358)
                      ++++|......-.+..+.++|
T Consensus        84 li~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   84 LIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EEETTEEEEEEEGGG-SHHHH
T ss_pred             EEECCEEEEECccccCCHHhc
Confidence            999985333322334555444

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.39  E-value=0.008  Score=42.14  Aligned_cols=51  Identities=18%  Similarity=0.368  Sum_probs=35.5

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhh----HhhcCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL----CSKYGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~P~l~~  102 (358)
                      ++.|..+|||+|......+.+.        .+.+-.+|.+.+++.    .+..|...+|++++
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i   55 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI   55 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence            3568889999999999998743        244555566655443    34457889999854

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.34  E-value=0.015  Score=40.17  Aligned_cols=51  Identities=22%  Similarity=0.324  Sum_probs=35.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH----hhcCcc-CCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC----SKYGVQ-GYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~P~l~~  102 (358)
                      ++.|..++|++|......|.+.        .+.+-.+|.+.+++..    +..+.. ++|++++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i   57 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI   57 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence            5678889999999998888742        2556667776654433    335666 8998853

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.33  E-value=0.016  Score=40.88  Aligned_cols=71  Identities=8%  Similarity=0.151  Sum_probs=49.9

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH---hhcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC---SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE  120 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~  120 (358)
                      ++.|..+||++|......|++        ..|.+-.+|.+++++..   +..|...+|++++  ++    ... ++.+.+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~----~~~-~Gf~~~   67 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES--------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD----LSW-SGFRPD   67 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC----EEE-ecCCHH
Confidence            567888999999998888853        34677788888776533   3457789999975  22    122 357778


Q ss_pred             HHHHHHhcc
Q 018270          121 ALAEYVNNE  129 (358)
Q Consensus       121 ~i~~~i~~~  129 (358)
                      .+.+++...
T Consensus        68 ~l~~~~~~~   76 (81)
T PRK10329         68 MINRLHPAP   76 (81)
T ss_pred             HHHHHHHhh
Confidence            888777543

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=96.33  E-value=0.014  Score=48.06  Aligned_cols=104  Identities=17%  Similarity=0.284  Sum_probs=80.1

Q ss_pred             CCeEEcC-hhhHHHHhcCC---CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           23 DDVVVLT-EDNFEKEVGQD---RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        23 ~~v~~l~-~~~f~~~~~~~---~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      ..|.+++ .+.|.+.+.+.   -.++|++|-+.-+-|..+...+.-+|+.+   +.|.|.++-... .....+|..+.+|
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey---P~vKFckikss~-~gas~~F~~n~lP  213 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY---PIVKFCKIKSSN-TGASDRFSLNVLP  213 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC---CceeEEEeeecc-ccchhhhcccCCc
Confidence            3566664 57899988433   45789999999999999999999999999   678898887653 4466899999999


Q ss_pred             eEEEccCCCCCcccc-------cCCCCHHHHHHHHhccCC
Q 018270           99 TIQWFPKGSLEPKKY-------EGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~-------~g~~~~~~i~~~i~~~~~  131 (358)
                      ++.+|.+|..+ ..|       -.......+..|++...-
T Consensus       214 ~LliYkgGeLI-gNFv~va~qlgedffa~dle~FL~e~gl  252 (273)
T KOG3171|consen  214 TLLIYKGGELI-GNFVSVAEQLGEDFFAGDLESFLNEYGL  252 (273)
T ss_pred             eEEEeeCCchh-HHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence            99999888643 222       234566778888887643

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=96.30  E-value=0.079  Score=40.43  Aligned_cols=82  Identities=20%  Similarity=0.363  Sum_probs=61.4

Q ss_pred             cccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE-EEEEeCC
Q 018270          148 ADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT-LKFFPKG  225 (358)
Q Consensus       148 ~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt-i~~~~~g  225 (358)
                      +-..++.+. ...+.+++-|.-.|-+.|.++...+.+.|...+  .-..++.||+++-+++.+.|.+. -|. +.||-.+
T Consensus         8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~--~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn   84 (133)
T PF02966_consen    8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK--NFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN   84 (133)
T ss_dssp             HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred             cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh--cceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence            344556553 567889999999999999999999999999885  45788899999999999999999 664 5566455


Q ss_pred             Ccceeee
Q 018270          226 NKDGEEY  232 (358)
Q Consensus       226 ~~~~~~~  232 (358)
                      +.....+
T Consensus        85 khm~vD~   91 (133)
T PF02966_consen   85 KHMMVDF   91 (133)
T ss_dssp             EEEEEES
T ss_pred             eEEEEEe
Confidence            4334443

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.11  E-value=0.014  Score=40.08  Aligned_cols=66  Identities=18%  Similarity=0.347  Sum_probs=42.0

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH---HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  239 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~  239 (358)
                      ++.|..+||+.|......+.+.        ++.+-.+|++.+.   .+....|...+|.+  |-+|.  .  . |  ..+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~--~--i-g--g~~   65 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGE--L--I-G--GSD   65 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCE--E--E-e--CHH
Confidence            6789999999999998777753        2334455554332   34444688899986  44442  1  1 2  266


Q ss_pred             HHHHHH
Q 018270          240 DFVSFI  245 (358)
Q Consensus       240 ~l~~~i  245 (358)
                      ++.+|+
T Consensus        66 ~l~~~l   71 (72)
T cd03029          66 DLEKYF   71 (72)
T ss_pred             HHHHHh
Confidence            777665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=96.04  E-value=0.06  Score=43.99  Aligned_cols=102  Identities=19%  Similarity=0.347  Sum_probs=72.2

Q ss_pred             CCeEEcChhhHHHHh---cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           23 DDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~---~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ..|.+++..+|-.-+   +++-.|+|+.|...-+.|.-+...++.++.+|   +.+.|+++-.+...   .-|--...||
T Consensus        91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf---p~iKFVki~at~cI---pNYPe~nlPT  164 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF---PQIKFVKIPATTCI---PNYPESNLPT  164 (240)
T ss_pred             cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC---CcceEEeccccccc---CCCcccCCCe
Confidence            467888888876655   45666889999999999999999999999999   55666666544322   3345568899


Q ss_pred             EEEccCCCCC-----cccccCC-CCHHHHHHHHhccC
Q 018270          100 IQWFPKGSLE-----PKKYEGP-RSTEALAEYVNNEG  130 (358)
Q Consensus       100 l~~~~~~~~~-----~~~~~g~-~~~~~i~~~i~~~~  130 (358)
                      +++|..|...     +..+.|. .+.+++..++-+..
T Consensus       165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag  201 (240)
T KOG3170|consen  165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG  201 (240)
T ss_pred             EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence            9999877532     1233443 45777777776543

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=95.97  E-value=0.032  Score=40.92  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEE
Q 018270          169 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLK  220 (358)
Q Consensus       169 ~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~  220 (358)
                      ||||+|......+.+..        +.+..+|+++++    .+.+..|...+|.++
T Consensus        25 ~~Cp~C~~ak~lL~~~~--------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf   72 (97)
T TIGR00365        25 PQCGFSARAVQILKACG--------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY   72 (97)
T ss_pred             CCCchHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence            99999999988887653        334456665444    344556777899864

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=95.92  E-value=0.018  Score=45.91  Aligned_cols=39  Identities=41%  Similarity=0.528  Sum_probs=30.6

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEE
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV   80 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~v   80 (358)
                      +.++.++.|+.++||+|+.+.|.+.++...+   +++.+...
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~---~~~~~~~~   42 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED---PDVRVVFK   42 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHC---CCceEEEE
Confidence            3577899999999999999999999887665   33444433

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=95.84  E-value=0.026  Score=46.52  Aligned_cols=104  Identities=23%  Similarity=0.363  Sum_probs=78.9

Q ss_pred             CCceEc-CcccHHHHHhcC--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          141 SNVVVL-TADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       141 ~~v~~l-~~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      ..|.++ +++.|...+...  .-.++|..|-+.-+.|..+...+.=||..|   +.+.|+++-.+ +....++|..+.+|
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey---P~vKFckikss-~~gas~~F~~n~lP  213 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY---PIVKFCKIKSS-NTGASDRFSLNVLP  213 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC---CceeEEEeeec-cccchhhhcccCCc
Confidence            357777 568888888322  245689999999999999999999999998   57899998765 34467899999999


Q ss_pred             EEEEEeCCCcce------eeecCCCCHHHHHHHHHHh
Q 018270          218 TLKFFPKGNKDG------EEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       218 ti~~~~~g~~~~------~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++++|++|.-..      ..+.....+.++..|+++.
T Consensus       214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence            999999885311      1223346777888888764

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=95.82  E-value=0.036  Score=37.99  Aligned_cols=66  Identities=18%  Similarity=0.355  Sum_probs=42.6

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch---hhHhhcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK---SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE  120 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~  120 (358)
                      ++.|..+|||+|.+....+.+.        .+.+-.+|.+++.   .+....|...+|.+.+  +|.     +-|  ..+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~-----~ig--g~~   65 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGE-----LIG--GSD   65 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCE-----EEe--CHH
Confidence            6778899999999998888742        2445556665543   2334458889999843  332     112  256


Q ss_pred             HHHHHH
Q 018270          121 ALAEYV  126 (358)
Q Consensus       121 ~i~~~i  126 (358)
                      ++.+|+
T Consensus        66 ~l~~~l   71 (72)
T cd03029          66 DLEKYF   71 (72)
T ss_pred             HHHHHh
Confidence            666665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=95.80  E-value=0.055  Score=44.38  Aligned_cols=32  Identities=28%  Similarity=0.582  Sum_probs=28.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT  189 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~  189 (358)
                      .++..++.|+.+.||+|+.+.+.+..+.+.+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~   45 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP   45 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence            56788999999999999999999999888763

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.031  Score=39.37  Aligned_cols=51  Identities=22%  Similarity=0.417  Sum_probs=35.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-----hhHhhc-CccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----SLCSKY-GVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~P~l~~  102 (358)
                      ++.|..++||+|......+.+        ..+.+..+|.+.+.     +..++. |...+|++++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~--------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR--------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH--------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            567888999999999888872        33445555554443     344454 7899999886

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.70  E-value=0.025  Score=39.85  Aligned_cols=51  Identities=18%  Similarity=0.385  Sum_probs=33.2

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----HHHHHhc-CCCcccEEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKY-GVSGFPTLKF  221 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----~~l~~~~-~v~~~Pti~~  221 (358)
                      ++.|..++||+|+.....+.+.        ++.+..++.+..     .+..++- |..++|+|++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            5788899999999988777743        333444443322     2344444 7889997654

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=95.61  E-value=0.0075  Score=52.71  Aligned_cols=88  Identities=23%  Similarity=0.482  Sum_probs=70.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe-CcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd-~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      +..++-..||+.||+..+...|.+.-...-|.   .+....++ .....+..++|++.+.|++.+...-  .+..|.|.+
T Consensus        75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~---~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t--~~~~~~~~r  149 (319)
T KOG2640|consen   75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS---SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT--CPASYRGER  149 (319)
T ss_pred             cCCcccccchhcccCcccccCcccchhhhhcc---ccccccHHHHhhcccchhccccccCCcceeeccc--cchhhcccc
Confidence            35678899999999999999999988888774   22222222 1234578889999999999998754  778999999


Q ss_pred             CHHHHHHHHHHhcC
Q 018270          237 DLEDFVSFINEKCG  250 (358)
Q Consensus       237 ~~~~l~~~i~~~~~  250 (358)
                      +...|++|..+.++
T Consensus       150 ~l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  150 DLASLVNFYTEITP  163 (319)
T ss_pred             cHHHHHHHHHhhcc
Confidence            99999999999886

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=95.59  E-value=0.065  Score=39.25  Aligned_cols=62  Identities=13%  Similarity=0.201  Sum_probs=40.6

Q ss_pred             hHHHHhcCCCcEEEEEE----CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270           32 NFEKEVGQDRGALVEFY----APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW  102 (358)
Q Consensus        32 ~f~~~~~~~~~~lv~fy----a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~  102 (358)
                      -.++.+++ ++++|+-.    ++|||+|......|.+..        +.+..+|..++++    +.+..|...+|++++
T Consensus         4 ~v~~~i~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~--------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi   73 (97)
T TIGR00365         4 RIKEQIKE-NPVVLYMKGTPQFPQCGFSARAVQILKACG--------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV   73 (97)
T ss_pred             HHHHHhcc-CCEEEEEccCCCCCCCchHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            34555655 45666654    389999999988887532        4455667765554    334457778999864

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK10638 glutaredoxin 3; Provisional

Probab=95.58  E-value=0.03  Score=39.66  Aligned_cols=51  Identities=12%  Similarity=0.270  Sum_probs=34.8

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF  221 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~~  221 (358)
                      ++.|..+||++|......+++..        +.+..+|++.+.    ++.+..|...+|++++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~g--------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSKG--------VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC--------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            56788899999999988877542        334445555443    4555567788997633

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.17  Score=49.41  Aligned_cols=86  Identities=20%  Similarity=0.402  Sum_probs=64.9

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhh-hH--HHHHHHhcCCCCeEEEEEeCcccHHHHHhcC---
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP-TY--EKVAAAFTLEDDVVVANLDADKYKDLAEKYG---  212 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~-~~--~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~---  212 (358)
                      .|-+......+.|.+.- ..++|+++-.-.+||..|.-|.. .|  .++|+.+  +.+++-++||.++-+++-+.|.   
T Consensus        24 nPV~W~pW~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~l--N~~FV~IKVDREERPDvD~~Ym~~~  100 (667)
T COG1331          24 NPVDWYPWGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAIL--NENFVPVKVDREERPDVDSLYMNAS  100 (667)
T ss_pred             CCccccccCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHH--HhCceeeeEChhhccCHHHHHHHHH
Confidence            34455667888898876 78999999999999999998854 22  3566666  4689999999998877666663   


Q ss_pred             -----CCcccEEEEEeCCCc
Q 018270          213 -----VSGFPTLKFFPKGNK  227 (358)
Q Consensus       213 -----v~~~Pti~~~~~g~~  227 (358)
                           --+.|--+|..++++
T Consensus       101 q~~tG~GGWPLtVfLTPd~k  120 (667)
T COG1331         101 QAITGQGGWPLTVFLTPDGK  120 (667)
T ss_pred             HHhccCCCCceeEEECCCCc
Confidence                 447997777765543

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=95.50  E-value=0.15  Score=43.44  Aligned_cols=52  Identities=15%  Similarity=0.178  Sum_probs=44.3

Q ss_pred             cCCCeEEcChhh---HHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC
Q 018270           21 LADDVVVLTEDN---FEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA   72 (358)
Q Consensus        21 ~~~~v~~l~~~~---f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~   72 (358)
                      ....+..++.++   +-+..++++|++|.|-+-.||+-..-.+.|.+++++|.+.
T Consensus        80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~  134 (237)
T PF00837_consen   80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV  134 (237)
T ss_pred             CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence            355688888766   5556689999999999999999999999999999999743

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=95.43  E-value=0.033  Score=45.82  Aligned_cols=27  Identities=22%  Similarity=0.567  Sum_probs=21.4

Q ss_pred             EEcCCCCcccchhhhhHHHHHHHhcCC
Q 018270          165 EFYAPWCGHCKNLAPTYEKVAAAFTLE  191 (358)
Q Consensus       165 ~f~a~~C~~c~~~~~~~~~la~~~~~~  191 (358)
                      .|..|.|+.|-...|.+.++...+...
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~   28 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNK   28 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence            588999999999999999999998644

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=95.40  E-value=0.11  Score=43.98  Aligned_cols=31  Identities=23%  Similarity=0.680  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCcccchhhhhH---HHHHHHhc
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFT  189 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~  189 (358)
                      +++.+|.|+.-.|+||..+.|.+   ..+.+.+.
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~   70 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP   70 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCC
Confidence            45679999999999999998865   67777764

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.37  E-value=0.21  Score=37.34  Aligned_cols=92  Identities=15%  Similarity=0.192  Sum_probs=59.1

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC-
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG-  225 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g-  225 (358)
                      +.++++.++......++|-|+..--   ......|.++|..++  +++.|+.   ..+..+.+++++. .|.+++|.+. 
T Consensus         7 s~~ele~f~~~~~~~~VVG~F~~~~---~~~~~~F~~vA~~~R--dd~~F~~---t~~~~~~~~~~~~-~~~vvl~rp~~   77 (107)
T cd03068           7 TLKQVQEFLRDGDDVIIIGVFSGEE---DPAYQLYQDAANSLR--EDYKFHH---TFDSEIFKSLKVS-PGQLVVFQPEK   77 (107)
T ss_pred             CHHHHHHHHhcCCCEEEEEEECCCC---CHHHHHHHHHHHhcc--cCCEEEE---EChHHHHHhcCCC-CCceEEECcHH
Confidence            3455677663332566666665421   246678999999885  4567755   3345777888886 5667777433 


Q ss_pred             -----CcceeeecCC-CCHHH-HHHHHHH
Q 018270          226 -----NKDGEEYGGG-RDLED-FVSFINE  247 (358)
Q Consensus       226 -----~~~~~~~~g~-~~~~~-l~~~i~~  247 (358)
                           ......|.|. .+.++ |..||++
T Consensus        78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence                 2234678877 56656 9999975

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=95.29  E-value=0.07  Score=38.47  Aligned_cols=59  Identities=22%  Similarity=0.351  Sum_probs=38.6

Q ss_pred             HHhcCCCcEEEEEEC----CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270           35 KEVGQDRGALVEFYA----PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW  102 (358)
Q Consensus        35 ~~~~~~~~~lv~fya----~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~  102 (358)
                      +.+++ ++++|+-.+    +||++|......|.+..        +.+-.+|..++++    +.+..|-..+|++++
T Consensus         3 ~~i~~-~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi   69 (90)
T cd03028           3 KLIKE-NPVVLFMKGTPEEPRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV   69 (90)
T ss_pred             hhhcc-CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            34544 456666543    79999999888887543        4455566655544    344557889999844

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK10638 glutaredoxin 3; Provisional

Probab=95.29  E-value=0.061  Score=38.08  Aligned_cols=51  Identities=14%  Similarity=0.247  Sum_probs=36.1

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~  102 (358)
                      ++.|..+||++|+.....+++.        .+.+..+|.+++++    +.+..+...+|++.+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5677789999999998888853        24455667765543    445567888998854

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=95.10  E-value=0.59  Score=34.25  Aligned_cols=104  Identities=17%  Similarity=0.179  Sum_probs=76.0

Q ss_pred             EcCcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH----HHHhcCCC-cccE
Q 018270          145 VLTADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVS-GFPT  218 (358)
Q Consensus       145 ~l~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~-~~Pt  218 (358)
                      .++..+.-+... +-....++.|--+-.+...++.+.+.++|+.+..++++.++.||-++.+-    +-+.|+|. .-|.
T Consensus         5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq   84 (120)
T cd03074           5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ   84 (120)
T ss_pred             hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence            345555555552 22466788888888888999999999999999988999999999997753    44577776 3588


Q ss_pred             EEEEeCCCccee--eecCC---CCHHHHHHHHHHh
Q 018270          219 LKFFPKGNKDGE--EYGGG---RDLEDFVSFINEK  248 (358)
Q Consensus       219 i~~~~~g~~~~~--~~~g~---~~~~~l~~~i~~~  248 (358)
                      |=+.+-.....+  ...+.   .++++|..||.+.
T Consensus        85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV  119 (120)
T cd03074          85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV  119 (120)
T ss_pred             eeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence            888764443333  33333   7899999999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=94.96  E-value=0.03  Score=40.42  Aligned_cols=43  Identities=23%  Similarity=0.431  Sum_probs=29.3

Q ss_pred             CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEE
Q 018270          169 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTL  219 (358)
Q Consensus       169 ~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti  219 (358)
                      |||++|+.....+.+..        +.+-.+|++.+.    .+.+..|-..+|++
T Consensus        21 ~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v   67 (90)
T cd03028          21 PRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL   67 (90)
T ss_pred             CCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence            79999999888877653        334444544333    45555688889986

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=94.81  E-value=0.43  Score=35.62  Aligned_cols=91  Identities=8%  Similarity=0.093  Sum_probs=61.5

Q ss_pred             ChhhHHHHhcCC-CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           29 TEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        29 ~~~~f~~~~~~~-~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      +.++++.++... ..++|-|+...-.   .....|.++|..++  .++.|+...   +..+.+.+++. .|.+++|++..
T Consensus         7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~R--dd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~   77 (107)
T cd03068           7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLR--EDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEK   77 (107)
T ss_pred             CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcc--cCCEEEEEC---hHHHHHhcCCC-CCceEEECcHH
Confidence            456677777665 7777777766433   46677889999887  557776555   34667788775 56677774432


Q ss_pred             ------CCcccccCC-CCHHH-HHHHHhc
Q 018270          108 ------LEPKKYEGP-RSTEA-LAEYVNN  128 (358)
Q Consensus       108 ------~~~~~~~g~-~~~~~-i~~~i~~  128 (358)
                            .....|+|. .+.++ |.+|++.
T Consensus        78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence                  122567777 56656 9999975

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.56  E-value=0.062  Score=44.04  Aligned_cols=41  Identities=27%  Similarity=0.492  Sum_probs=33.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD   81 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd   81 (358)
                      .+++.+++|+...||+|+.+.+.+..+..++.  +++.+..+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~--~~v~~~~~~   54 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP--KDVKFEKVP   54 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC--CCceEEEcC
Confidence            67889999999999999999999999998875  445554433

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PRK10824 glutaredoxin-4; Provisional

Probab=94.28  E-value=0.11  Score=39.14  Aligned_cols=62  Identities=13%  Similarity=0.246  Sum_probs=38.2

Q ss_pred             hHHHHhcCCCcEEEEEEC----CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH----hhcCccCCCeEEE
Q 018270           32 NFEKEVGQDRGALVEFYA----PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC----SKYGVQGYPTIQW  102 (358)
Q Consensus        32 ~f~~~~~~~~~~lv~fya----~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~P~l~~  102 (358)
                      -.++.+++ .+++|+--.    ||||+|......|....        +.+..+|.+++.++.    +.-|-..+|.+++
T Consensus         7 ~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824          7 KIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV   76 (115)
T ss_pred             HHHHHHhc-CCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence            34556655 556665554    69999999998887653        223334555444433    3346678888765

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=94.04  E-value=0.5  Score=38.80  Aligned_cols=102  Identities=22%  Similarity=0.317  Sum_probs=74.7

Q ss_pred             CCCceEcCcccHHHHHhcC--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          140 PSNVVVLTADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      -..|..+++..|-+-+...  +--|+|..|...-+.|.-+.-.+..+|..|   +.+.|+++-.+..   ...|--...|
T Consensus        90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf---p~iKFVki~at~c---IpNYPe~nlP  163 (240)
T KOG3170|consen   90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF---PQIKFVKIPATTC---IPNYPESNLP  163 (240)
T ss_pred             ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC---CcceEEecccccc---cCCCcccCCC
Confidence            4558888988887777443  345788899999999999999999999999   5788988776543   1244456789


Q ss_pred             EEEEEeCCCc-----ceeeecCC-CCHHHHHHHHHH
Q 018270          218 TLKFFPKGNK-----DGEEYGGG-RDLEDFVSFINE  247 (358)
Q Consensus       218 ti~~~~~g~~-----~~~~~~g~-~~~~~l~~~i~~  247 (358)
                      |+++|..|.-     -+..+.|. .+.+++..++.+
T Consensus       164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q  199 (240)
T KOG3170|consen  164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ  199 (240)
T ss_pred             eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence            9999988853     12344554 567777766654

>PRK10824 glutaredoxin-4; Provisional

Probab=93.75  E-value=0.12  Score=39.09  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=27.3

Q ss_pred             CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEEE
Q 018270          169 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF  221 (358)
Q Consensus       169 ~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~~  221 (358)
                      ||||+|+.....+.++...|      ..  +|.+++.    .+.+.-|...+|.+++
T Consensus        28 p~Cpyc~~ak~lL~~~~i~~------~~--idi~~d~~~~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824         28 PSCGFSAQAVQALSACGERF------AY--VDILQNPDIRAELPKYANWPTFPQLWV   76 (115)
T ss_pred             CCCchHHHHHHHHHHcCCCc------eE--EEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence            69999999988887764322      23  3444333    3333446667886443

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.66  E-value=0.18  Score=49.22  Aligned_cols=85  Identities=22%  Similarity=0.310  Sum_probs=71.8

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccchhhHhhcC-----
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHKSLCSKYG-----   93 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-----   93 (358)
                      .-++.....+.|..+-..++|++|-.-.+||.-|.-|..+=   .++|+.++  ..++-++||-++-|++-..|.     
T Consensus        25 PV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN--~~FV~IKVDREERPDvD~~Ym~~~q~  102 (667)
T COG1331          25 PVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN--ENFVPVKVDREERPDVDSLYMNASQA  102 (667)
T ss_pred             CccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH--hCceeeeEChhhccCHHHHHHHHHHH
Confidence            34678888999999999999999999999999999997754   68888887  568888999999888876664     


Q ss_pred             ---ccCCCeEEEccCCCC
Q 018270           94 ---VQGYPTIQWFPKGSL  108 (358)
Q Consensus        94 ---i~~~P~l~~~~~~~~  108 (358)
                         --+.|-.+|+.++++
T Consensus       103 ~tG~GGWPLtVfLTPd~k  120 (667)
T COG1331         103 ITGQGGWPLTVFLTPDGK  120 (667)
T ss_pred             hccCCCCceeEEECCCCc
Confidence               569999999988764

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=93.62  E-value=0.079  Score=43.58  Aligned_cols=26  Identities=31%  Similarity=0.672  Sum_probs=21.3

Q ss_pred             EEECCCChhhhhhhHHHHHHHHHhhc
Q 018270           46 EFYAPWCGHCKKLAPEYEKLGASFKK   71 (358)
Q Consensus        46 ~fya~~c~~C~~~~~~~~~~~~~~~~   71 (358)
                      +|.-|.|+.|-...|.+.++...++.
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~   27 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGN   27 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence            58899999999999999999999974

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=93.58  E-value=0.8  Score=39.07  Aligned_cols=61  Identities=15%  Similarity=0.261  Sum_probs=47.0

Q ss_pred             CCCCCceEcCccc---HHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE
Q 018270          138 AVPSNVVVLTADN---FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL  199 (358)
Q Consensus       138 ~~~~~v~~l~~~~---f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v  199 (358)
                      ...+.+..+++.+   +-++. .+++|.++.|-+-.||+-..-.+.|+++++.|....++.++.|
T Consensus        79 APns~vv~l~g~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI  142 (237)
T PF00837_consen   79 APNSPVVTLDGQRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI  142 (237)
T ss_pred             CCCCceEeeCCCcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence            3556688888766   33333 6789999999998899999999999999999975445555543

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=93.34  E-value=0.32  Score=35.99  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=36.6

Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-H----HHHhcCCCcccEEEE
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-D----LAEKYGVSGFPTLKF  221 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-~----l~~~~~v~~~Pti~~  221 (358)
                      .-+|.|..+||+.|..+...|..    +  .....++.+|-..+. +    +.+.-+-+.+|.+++
T Consensus        14 ~~VVifSKs~C~~c~~~k~ll~~----~--~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI   73 (104)
T KOG1752|consen   14 NPVVIFSKSSCPYCHRAKELLSD----L--GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI   73 (104)
T ss_pred             CCEEEEECCcCchHHHHHHHHHh----C--CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence            34678899999999998777776    2  345678888866432 3    333334557886443

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=92.84  E-value=2.1  Score=34.27  Aligned_cols=44  Identities=23%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .++.|++.|| ..+++.|-...-.|++...+|... +..+..|..|
T Consensus        29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~D   73 (157)
T COG1225          29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPD   73 (157)
T ss_pred             cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            5668888888 478999999999999999888643 4555555554

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=92.80  E-value=0.31  Score=39.11  Aligned_cols=59  Identities=12%  Similarity=0.158  Sum_probs=39.4

Q ss_pred             CCcEEEE-EECCCChhhhhh-hHHHHHHHHHhhcCCceEEEEEeCcc---chhhHhhcCc-cCCC
Q 018270           40 DRGALVE-FYAPWCGHCKKL-APEYEKLGASFKKAKSVLIGKVDCDE---HKSLCSKYGV-QGYP   98 (358)
Q Consensus        40 ~~~~lv~-fya~~c~~C~~~-~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~i-~~~P   98 (358)
                      ++++++. |-+.||+.|... .+.|.+..+++...+-..+..|.++.   ...+++++++ ..+|
T Consensus        29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~   93 (155)
T cd03013          29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR   93 (155)
T ss_pred             CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence            3445544 557899999998 99999999998754421355555543   3457778776 2444

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=92.48  E-value=0.2  Score=47.08  Aligned_cols=51  Identities=10%  Similarity=0.191  Sum_probs=35.1

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH---HHHh---------cCCCcccEEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD---LAEK---------YGVSGFPTLKF  221 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---l~~~---------~~v~~~Pti~~  221 (358)
                      ++.|..+|||+|+.....+.+.        ++.+-.+|+++.+.   +.++         .|..++|++++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            6789999999999987776654        35555666665442   2222         36778999855

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=92.45  E-value=0.97  Score=36.12  Aligned_cols=43  Identities=16%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC
Q 018270           39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC   82 (358)
Q Consensus        39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~   82 (358)
                      .+++++++||- .++|-|....-.|.+...+++..+ ..+..|..
T Consensus        29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~-a~V~GIS~   72 (157)
T COG1225          29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG-AVVLGISP   72 (157)
T ss_pred             cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC-CEEEEEeC
Confidence            46689999995 778899999999999999888654 44444433

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=91.94  E-value=0.36  Score=45.43  Aligned_cols=51  Identities=10%  Similarity=0.184  Sum_probs=36.9

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH---hh---------cCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC---SK---------YGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~---~~---------~~i~~~P~l~~  102 (358)
                      ++.|..+|||+|......+.+.        .|.+-.+|.++++...   ++         .|...+|++++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            6789999999999888877742        3666677777665322   22         36789999976

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=91.73  E-value=0.76  Score=31.33  Aligned_cols=63  Identities=10%  Similarity=0.073  Sum_probs=50.7

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      .+..|-+...+.++.....+.++-+.+. .+.+.+-.||..+++++++.++|-..||++=..+.
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~   65 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPP   65 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCC
Confidence            3445556666888999888988888775 36789999999999999999999999998754443

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=91.70  E-value=1.9  Score=31.31  Aligned_cols=74  Identities=14%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             CCcE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCC
Q 018270           40 DRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS  118 (358)
Q Consensus        40 ~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~  118 (358)
                      .+++ ++.|..+. ..|.++...++++++.-   +.+.+-..+...           ..|++.+..++....++|.|...
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS---dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~   82 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASLS---DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM   82 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC---CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence            3444 55555555 89999999998888764   445553332211           47999998776544588988777


Q ss_pred             HHHHHHHHhc
Q 018270          119 TEALAEYVNN  128 (358)
Q Consensus       119 ~~~i~~~i~~  128 (358)
                      =.++..||..
T Consensus        83 GhEf~Slila   92 (94)
T cd02974          83 GHEFTSLVLA   92 (94)
T ss_pred             chhHHHHHHH
Confidence            7777777653

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=91.62  E-value=0.75  Score=36.90  Aligned_cols=53  Identities=19%  Similarity=0.280  Sum_probs=37.3

Q ss_pred             CcEEEEEcCCCCcccchh-hhhHHHHHHHhcCCCCe-EEEEEeCc---ccHHHHHhcCC
Q 018270          160 KDVLVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDV-VVANLDAD---KYKDLAEKYGV  213 (358)
Q Consensus       160 ~~v~v~f~a~~C~~c~~~-~~~~~~la~~~~~~~~v-~~~~vd~~---~~~~l~~~~~v  213 (358)
                      ..+++.|...||+.|... .+.|.+...+|...+ + .++.+..+   ....+++++++
T Consensus        31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D~~~~~~~~~~~~~~   88 (155)
T cd03013          31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVNDPFVMKAWGKALGA   88 (155)
T ss_pred             cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECCCHHHHHHHHHhhCC
Confidence            344555557999999998 999999999986443 3 34444444   34567788777

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=90.23  E-value=1.2  Score=32.95  Aligned_cols=63  Identities=16%  Similarity=0.252  Sum_probs=39.4

Q ss_pred             hHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-hh----HhhcCccCCCeEEE
Q 018270           32 NFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-SL----CSKYGVQGYPTIQW  102 (358)
Q Consensus        32 ~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l----~~~~~i~~~P~l~~  102 (358)
                      .+.+.+.++.  +|.|-.+||++|..+...|..    +.  ....+..+|-..+. ++    .+.-+-..+|.+++
T Consensus         6 ~v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~~--v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI   73 (104)
T KOG1752|consen    6 KVRKMISENP--VVIFSKSSCPYCHRAKELLSD----LG--VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI   73 (104)
T ss_pred             HHHHHhhcCC--EEEEECCcCchHHHHHHHHHh----CC--CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence            3555565433  445778999999998888876    32  34556666665443 33    23334568888775

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=90.21  E-value=2.2  Score=35.99  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhh-cC-Cce--EEEEEeCcc-chhhHhhcCc-cCCCeEE
Q 018270           30 EDNFEKEVGQDRGALVEFYAPWCG-HCKKLAPEYEKLGASFK-KA-KSV--LIGKVDCDE-HKSLCSKYGV-QGYPTIQ  101 (358)
Q Consensus        30 ~~~f~~~~~~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~-~~-~~v--~~~~vd~~~-~~~l~~~~~i-~~~P~l~  101 (358)
                      .+.|...--++++++|.|.=..|| -|-.....+..+.+++. +. .+|  .++.+|-+. .++..++|.. ...|.+.
T Consensus        57 G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~  135 (207)
T COG1999          57 GKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWI  135 (207)
T ss_pred             CCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCee
Confidence            333444334789999999988888 79999999999988887 32 344  455555543 2566677765 3334333

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=89.61  E-value=5  Score=29.07  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=50.9

Q ss_pred             CCcE-EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCC
Q 018270          159 SKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD  237 (358)
Q Consensus       159 ~~~v-~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~  237 (358)
                      .++| ++.|..+. ..|.++...++++|+.-   +.+.+-..+.+.           ..|++.+..+|....++|.|-..
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS---dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~   82 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASLS---DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM   82 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC---CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence            3444 55666554 88999888888888754   344443322211           47999998777445689999988


Q ss_pred             HHHHHHHHHH
Q 018270          238 LEDFVSFINE  247 (358)
Q Consensus       238 ~~~l~~~i~~  247 (358)
                      -.++..||..
T Consensus        83 GhEf~Slila   92 (94)
T cd02974          83 GHEFTSLVLA   92 (94)
T ss_pred             chhHHHHHHH
Confidence            8888888753

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=88.39  E-value=1.6  Score=30.93  Aligned_cols=75  Identities=12%  Similarity=0.047  Sum_probs=57.0

Q ss_pred             CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCC
Q 018270           41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS  118 (358)
Q Consensus        41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~  118 (358)
                      ..++=.|.+..-+.+++....+.++-+..-. +...+-.||..+++++++.++|-..||++=..+...  -+.-|..+
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~--rriiGdls   77 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ-GVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPV--RKIIGDLS   77 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCc--ceeecccc
Confidence            3455567788888999999999888776543 458888999999999999999999999875545432  34455543

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=88.06  E-value=1.7  Score=31.86  Aligned_cols=76  Identities=13%  Similarity=0.051  Sum_probs=58.7

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCC
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS  118 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~  118 (358)
                      ...++=.|.+..-+.+++....+.++-+.+-. +...+-.||..+++.+++.++|-..||++=..+...  -+.-|..+
T Consensus         5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~--rriiGDls   80 (103)
T PRK09301          5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPV--RKIIGDLS   80 (103)
T ss_pred             ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCc--ceeecccc
Confidence            34566678888889999999999888776544 458888999999999999999999999875545432  34556553

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.96  E-value=3.9  Score=35.41  Aligned_cols=39  Identities=33%  Similarity=0.447  Sum_probs=30.0

Q ss_pred             cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       204 ~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +..++.++||.+.||+++-..      .+.|..+.++|.+.|...
T Consensus       204 ~~~~a~~~gv~gTPt~~v~~~------~~~g~~~~~~l~~~i~~~  242 (244)
T COG1651         204 NYKLAQQLGVNGTPTFIVNGK------LVPGLPDLDELKAIIDEA  242 (244)
T ss_pred             HHHHHHhcCCCcCCeEEECCe------eecCCCCHHHHHHHHHHh
Confidence            346788899999999777532      678888888888887653

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=86.93  E-value=1.7  Score=34.42  Aligned_cols=51  Identities=20%  Similarity=0.299  Sum_probs=34.1

Q ss_pred             EEEEcCC------CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCC----CcccEEEE
Q 018270          163 LVEFYAP------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGV----SGFPTLKF  221 (358)
Q Consensus       163 ~v~f~a~------~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v----~~~Pti~~  221 (358)
                      +|.|+++      +|++|......|+..        .+.+-.+|++.+.    +|.+..+-    ..+|.+++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence            4677778      899999988877754        3556667776443    45555554    56886543

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=86.06  E-value=4.7  Score=31.18  Aligned_cols=23  Identities=9%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             cHHHHHhcCCCcccEEEEEeCCC
Q 018270          204 YKDLAEKYGVSGFPTLKFFPKGN  226 (358)
Q Consensus       204 ~~~l~~~~~v~~~Pti~~~~~g~  226 (358)
                      ++.+.++|+|+.+|++++.+++.
T Consensus        60 dP~lF~~f~I~~VPa~V~~~~~~   82 (130)
T TIGR02742        60 DPQWFKQFDITAVPAFVVVKDGL   82 (130)
T ss_pred             ChHHHhhcCceEcCEEEEECCCC
Confidence            68899999999999999998763

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=85.03  E-value=16  Score=28.38  Aligned_cols=74  Identities=23%  Similarity=0.412  Sum_probs=49.7

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc----CCCeEEEccCCCCCcccccCCCC
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ----GYPTIQWFPKGSLEPKKYEGPRS  118 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----~~P~l~~~~~~~~~~~~~~g~~~  118 (358)
                      -++.|++|.|+=|......++    .    +.+.+-.+..++-..+-+++||.    +==|.++  +|    ...+|-..
T Consensus        27 ~~~vyksPnCGCC~~w~~~mk----~----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G----y~vEGHVP   92 (149)
T COG3019          27 EMVVYKSPNCGCCDEWAQHMK----A----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG----YYVEGHVP   92 (149)
T ss_pred             eEEEEeCCCCccHHHHHHHHH----h----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC----EEEeccCC
Confidence            577899999999977666655    1    33555556666666666778764    2223332  22    45678889


Q ss_pred             HHHHHHHHhccC
Q 018270          119 TEALAEYVNNEG  130 (358)
Q Consensus       119 ~~~i~~~i~~~~  130 (358)
                      .+.|..++.+..
T Consensus        93 a~aI~~ll~~~p  104 (149)
T COG3019          93 AEAIARLLAEKP  104 (149)
T ss_pred             HHHHHHHHhCCC
Confidence            999999998764

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=84.93  E-value=4  Score=27.93  Aligned_cols=76  Identities=13%  Similarity=0.220  Sum_probs=43.2

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV  242 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~  242 (358)
                      +.+|+.+.|+.|+...-.+.+..-.|      .+..+|.....++ +.-+...+|++..-..|+.. ..    .+...+.
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~gi~y------~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~-~l----~eS~~I~   69 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYHGIPY------EVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQ-QL----VDSSVII   69 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCce------EEEECCchhHHHH-HHhCCCccCEEEECCCCCcc-EE----EcHHHHH
Confidence            45788899999999886666553333      3334443322333 23345568987643211111 11    3467888


Q ss_pred             HHHHHhcC
Q 018270          243 SFINEKCG  250 (358)
Q Consensus       243 ~~i~~~~~  250 (358)
                      +|+.+.+|
T Consensus        70 ~yL~~~~~   77 (77)
T cd03040          70 STLKTYLG   77 (77)
T ss_pred             HHHHHHcC
Confidence            88887654

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=84.62  E-value=7.8  Score=30.05  Aligned_cols=75  Identities=21%  Similarity=0.364  Sum_probs=54.7

Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc----ccEEEEEeCCCcceeeecCCC
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG----FPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~----~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      .-++.|+.|.|+-|......++.        ..+.+-.+..++...+-+++||..    =-|.++  +|    ...+|..
T Consensus        26 ~~~~vyksPnCGCC~~w~~~mk~--------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G----y~vEGHV   91 (149)
T COG3019          26 TEMVVYKSPNCGCCDEWAQHMKA--------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG----YYVEGHV   91 (149)
T ss_pred             eeEEEEeCCCCccHHHHHHHHHh--------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC----EEEeccC
Confidence            35788999999999987665551        256677777788888888999862    233332  23    4568899


Q ss_pred             CHHHHHHHHHHhc
Q 018270          237 DLEDFVSFINEKC  249 (358)
Q Consensus       237 ~~~~l~~~i~~~~  249 (358)
                      .++++..++++.-
T Consensus        92 Pa~aI~~ll~~~p  104 (149)
T COG3019          92 PAEAIARLLAEKP  104 (149)
T ss_pred             CHHHHHHHHhCCC
Confidence            9999999998754

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=84.53  E-value=3.3  Score=28.25  Aligned_cols=61  Identities=18%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEe
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  223 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~  223 (358)
                      .+.+|-+...+...+....+.++-+.+. .+.+.+=.+|..+++.+++.++|-..||++=..
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~   63 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVL   63 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence            4566767666666666667777666665 568888899999999999999999999977443

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=82.70  E-value=3.1  Score=34.02  Aligned_cols=57  Identities=16%  Similarity=0.146  Sum_probs=37.9

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhhcC-CceEEEEEeCc
Q 018270           27 VLTEDNFEKEVGQDRGALVEFYAPWCG-HCKKLAPEYEKLGASFKKA-KSVLIGKVDCD   83 (358)
Q Consensus        27 ~l~~~~f~~~~~~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~   83 (358)
                      +-+.+.|...--.+++++|.|.-..|+ .|-.....+.++.+.+... .++.++.|-.|
T Consensus        39 d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD   97 (174)
T PF02630_consen   39 DQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD   97 (174)
T ss_dssp             ETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred             cCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence            333333433323689999999888997 7999999999998887653 35555555443

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=81.29  E-value=3.2  Score=27.95  Aligned_cols=51  Identities=8%  Similarity=0.066  Sum_probs=32.8

Q ss_pred             EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cHHHHHhcCCCcccEEE
Q 018270          164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~l~~~~~v~~~Pti~  220 (358)
                      ++|+.+||+.|.+..-.+.+..-      .+....+|... .+++.+......+|++.
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~   53 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLV   53 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence            46788999999988766665533      34455666442 34555555566789874

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PHA03075 glutaredoxin-like protein; Provisional

Probab=81.18  E-value=2  Score=32.05  Aligned_cols=29  Identities=21%  Similarity=0.621  Sum_probs=25.6

Q ss_pred             CcEEEEEcCCCCcccchhhhhHHHHHHHh
Q 018270          160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAF  188 (358)
Q Consensus       160 ~~v~v~f~a~~C~~c~~~~~~~~~la~~~  188 (358)
                      +.++++|..|.|+-|+.....+.++..+|
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY   30 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY   30 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence            56899999999999999999998887766

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=81.00  E-value=6  Score=31.36  Aligned_cols=51  Identities=16%  Similarity=0.236  Sum_probs=33.7

Q ss_pred             EEEEECC------CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCc----cCCCeEEE
Q 018270           44 LVEFYAP------WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGV----QGYPTIQW  102 (358)
Q Consensus        44 lv~fya~------~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i----~~~P~l~~  102 (358)
                      +|.|+++      +|++|......|+..        .|.+-.+|.+.+++    +.+..+-    ..+|++++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence            3455566      899999888888743        36667778776654    3334443    57888765

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=80.81  E-value=22  Score=27.73  Aligned_cols=91  Identities=7%  Similarity=-0.008  Sum_probs=60.8

Q ss_pred             hcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccch------------------hhHhhcCcc
Q 018270           37 VGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHK------------------SLCSKYGVQ   95 (358)
Q Consensus        37 ~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~------------------~l~~~~~i~   95 (358)
                      .++.|+++|+.+++....+..+-...   +.+.+-++  .++.+-.-|.+...                  ...+.++..
T Consensus        18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~   95 (136)
T cd02990          18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTD   95 (136)
T ss_pred             hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcC
Confidence            45689999999998875554443333   44555555  44666666665432                  234567899


Q ss_pred             CCCeEEEccCCCC---CcccccCCCCHHHHHHHHhcc
Q 018270           96 GYPTIQWFPKGSL---EPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        96 ~~P~l~~~~~~~~---~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .+|.+.+......   ...+.+|..+++++.+-+...
T Consensus        96 ~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~  132 (136)
T cd02990          96 QLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA  132 (136)
T ss_pred             CCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence            9999988854432   234668999999999877653

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=80.46  E-value=5.4  Score=30.05  Aligned_cols=45  Identities=13%  Similarity=0.282  Sum_probs=29.7

Q ss_pred             hhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeC
Q 018270          176 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK  224 (358)
Q Consensus       176 ~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~  224 (358)
                      .+.+.+..+.+.....+..    .+..=++.+.++|+|+.+|++++-++
T Consensus        36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence            4555555555554333222    22223588999999999999999987

The N-terminal portion of these proteins is heterogeneous.

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=80.35  E-value=11  Score=34.92  Aligned_cols=97  Identities=12%  Similarity=0.136  Sum_probs=67.3

Q ss_pred             hhHHHHh---cCCCcEEEEEECCCChhhhhhh-HHHH-HHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEEEc
Q 018270           31 DNFEKEV---GQDRGALVEFYAPWCGHCKKLA-PEYE-KLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        31 ~~f~~~~---~~~~~~lv~fya~~c~~C~~~~-~~~~-~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~  103 (358)
                      .++.+.|   +.++.++|.|-+......+.+. -.|. +..... ....++.++|+...  ...++.-|-+..+|++++.
T Consensus         6 GnipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~-ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffI   84 (506)
T KOG2507|consen    6 GNIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDS-LSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFI   84 (506)
T ss_pred             cchHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhh-hhcceEEEEeccCchhhhhhhhhcccccccceeee
Confidence            4555555   5677788888888888888887 3343 333222 12456666776643  3456778889999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhc
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      ...|.......|...++++..-|..
T Consensus        85 g~sGtpLevitg~v~adeL~~~i~K  109 (506)
T KOG2507|consen   85 GFSGTPLEVITGFVTADELASSIEK  109 (506)
T ss_pred             cCCCceeEEeeccccHHHHHHHHHH
Confidence            8777555677898899998877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		2e-42
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		3e-18
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		2e-24
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		3e-24
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		4e-23
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		6e-20
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		8e-23
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		2e-22
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		1e-18
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-22
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		4e-22
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		9e-22
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		2e-20
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		9e-20
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		5e-19
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		7e-19
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		3e-18
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		8e-19
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		1e-18
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		2e-18
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		7e-18
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		1e-17
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		1e-17
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		3e-17
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		2e-17
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		4e-17
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		9e-15
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		2e-14
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		3e-14
3h79_A	127	Crystal Structure Of Trypanosoma Cruzi Thioredoxin-		6e-14
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		5e-13
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		6e-13
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		1e-12
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		7e-12
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		4e-12
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		7e-12
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		8e-12
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		8e-12
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		8e-12
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		1e-11
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		1e-11
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		1e-11
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		1e-11
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		1e-11
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		1e-11
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		1e-11
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		1e-11
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		1e-11
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		2e-11
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		3e-11
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		2e-11
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		2e-11
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		3e-11
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-11
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		8e-08
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		3e-11
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		3e-11
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		4e-11
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		6e-11
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		6e-11
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		9e-11
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		1e-10
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		1e-10
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		1e-10
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		1e-10
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		1e-10
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		4e-07
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		2e-10
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		2e-10
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		2e-10
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		3e-10
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		2e-09
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		3e-10
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		2e-09
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		4e-10
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		4e-10
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		5e-10
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		3e-05
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		6e-10
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		8e-10
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		1e-07
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		8e-10
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		8e-10
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		9e-10
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		1e-09
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		1e-08
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		1e-09
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		9e-09
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		1e-09
2qc7_A	240	Crystal Structure Of The Protein-disulfide Isomeras		2e-09
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		2e-09
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		2e-09
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		2e-09
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		1e-07
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		2e-09
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		9e-08
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		2e-09
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		3e-09
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		3e-09
2o7k_A	107	S. Aureus Thioredoxin Length = 107		3e-09
2o7k_A	107	S. Aureus Thioredoxin Length = 107		1e-07
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		4e-09
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		4e-09
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		4e-09
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		4e-09
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		4e-09
3tco_A	109	Crystallographic And Spectroscopic Characterization		4e-09
3tco_A	109	Crystallographic And Spectroscopic Characterization		2e-08
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		5e-09
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		3e-08
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		6e-09
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		3e-07
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		6e-09
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		8e-09
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		7e-09
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		8e-09
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		9e-09
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		9e-09
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		1e-08
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		2e-08
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		1e-08
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		1e-08
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		1e-08
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		1e-08
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-08
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-08
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		2e-08
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		2e-08
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		1e-06
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		2e-08
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		3e-08
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		4e-08
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		6e-08
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		4e-08
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		5e-08
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		4e-07
3hz4_A	140	Crystal Structure Of Thioredoxin From Methanosarcin		5e-08
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		5e-08
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		6e-08
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		6e-08
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		4e-07
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		7e-08
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		2e-07
3t58_A	519	C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTER		9e-08
3t58_A	519	C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTER		4e-07
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		9e-08
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		9e-08
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		6e-06
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		1e-07
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		2e-05
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		1e-07
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		1e-07
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		4e-05
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		1e-07
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		1e-07
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		1e-07
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		9e-06
1thx_A	115	Thioredoxin-2 Length = 115		1e-07
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		2e-07
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		3e-07
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		3e-07
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		3e-07
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		3e-07
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		5e-07
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		5e-06
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		6e-07
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		3e-06
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		7e-07
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		1e-06
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		1e-06
1g7d_A	106	Nmr Structure Of Erp29 C-Domain Length = 106		4e-06
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		5e-06
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		5e-06
1erw_A	105	Human Thioredoxin Double Mutant With Cys 32 Replace		6e-06
2diy_A	130	The Solution Structure Of The Thioredoxin Domain Of		1e-05
2hxk_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-05
2wz9_A	153	Crystal Structure Of The Thioredoxin Domain Of Huma		3e-05
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		3e-05
3d21_A	139	Crystal Structure Of A Poplar Wild-Type Thioredoxin		6e-05
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		7e-05
3ul3_B	128	Structural Insights Into Thioredoxin-2: A Component		8e-05
2dj0_A	137	The Solution Structure Of The Thioredoxin Domain Of		2e-04
1r26_A	125	Crystal Structure Of Thioredoxin From Trypanosoma B		2e-04
2fwe_A	134	Crystal Structure Of The C-Terminal Domain Of The E		6e-04
1uc7_A	125	Crystal Structure Of Dsbdgamma Length = 125		6e-04

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 9/230 (3%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVDCD 83
           V+VL + NF+  V      L+EFYAPWCGHCK+ APEYEK+    K K   + + K+D  
Sbjct: 17  VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNV 143
               L S++ V GYPTI+   KG  +   YEG R+ E +   V      +      P   
Sbjct: 77  SASVLASRFDVSGYPTIKILKKG--QAVDYEGSRTQEEIVAKVREVSQPD--WTPPPEVT 132
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDAD 202
           +VLT +NFDE+V D +  +LVEFYAPWCGHCK LAP YEK A   +     + +A +DA 
Sbjct: 133 LVLTKENFDEVVND-ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 191
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252
              DLA+++ VSG+PTLK F KG     +Y G R+    V ++ E+ G +
Sbjct: 192 AETDLAKRFDVSGYPTLKIFRKGRP--YDYNGPREKYGIVDYMIEQSGAA 239

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANL 199
           + V+VL   NFD  V DK   VL+EFYAPWCGHCK  AP YEK+A     +D  + VA +
Sbjct: 15  NGVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           DA     LA ++ VSG+PT+K   KG     +Y G R  E+ V+ + E
Sbjct: 74  DATSASVLASRFDVSGYPTIKILKKGQ--AVDYEGSRTQEEIVAKVRE 119

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V V+ A+NFDEIV +++KDVL+EFYAPWCGHCKNL P Y+++    + + ++V+A +DA 
Sbjct: 29  VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 88
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFI 245
              D+   Y V GFPT+ F P   K + ++Y GGR+L DF+S++
Sbjct: 89  A-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYL 131

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 11/117 (9%)
Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
           S+V+ LT DNF+  + D      +LVEF+APWCGH K LAP YE  AAA  L+  V +A 
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYE--AAATRLKGIVPLAK 58
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 252
           +D     +   KYGVSG+PTLK F    +DGEE   Y G R  +  VS + ++ G +
Sbjct: 59  VDCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +DDV+ LT  NF +EV Q  G  LVEFYAPWCGHC++L PE++K   + K    V +G V
Sbjct: 16  SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV--VKVGAV 73
Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 124
           + D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+ +
Sbjct: 74  NADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 117

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           +V+ LT  NF+  V+      LVEFYAPWCGHC+ L P ++K A A  L+D V V  ++A
Sbjct: 18  DVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATA--LKDVVKVGAVNA 75
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 242
           DK++ L  +YGV GFPT+K F       E+Y GGR  E  V
Sbjct: 76  DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 116

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 7/109 (6%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT---LEDDVVVANL 199
           V V+ A N++EIVLD +KDVL+EFYAPWCGHCK LAP YE++ A +     +D VV+A +
Sbjct: 9   VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFINE 247
           DA    D+ ++  + GFPT+K +P G K     Y G R +ED + FI E
Sbjct: 69  DATA-NDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 6/111 (5%)
Query: 24  DVVVLTEDNFEKEVGQDRGA---LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           DV+ LT+DNFE  +     A   LVEF+APWCGHCK+LAPEYE      K    V + KV
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG 131
           DC  + + C+KYGV GYPT++ F  G  E   Y+GPR+ + +  ++  + G
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGE-EAGAYDGPRTADGIVSHLKKQAG 109

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 11/117 (9%)
Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
           S+V+ LT DNF+  + D      +LVEF+APWCGHCK LAP YE  AAA  L+  V +A 
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAK 58
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 252
           +D     +   KYGVSG+PTLK F    +DGEE   Y G R  +  VS + ++ G +
Sbjct: 59  VDCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 13/212 (6%)
Query: 15  LFFVSALAD-DVVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYEKLGASFK 70
           L F+  L +  VV LT   F + V Q   D   +V+FY+PW    + L PE++++  +  
Sbjct: 534 LEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593
Query: 71  KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 130
               + +G VDC ++ S C++  VQ YP I+++P+ S +  +Y         A  + + G
Sbjct: 594 GL--INVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWG 651
Query: 131 GTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL 190
                +  +P   + LT   F+E VL      +V+FYAPW G  +N AP +E +A    +
Sbjct: 652 -----LGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLAR--MI 704
Query: 191 EDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222
           +  V    +D   Y    +K G+  +P++K +
Sbjct: 705 KGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY 736

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V V+    FD IV+D  KDVL+EFYAPWCGHCK L P Y  +   +  + D+V+A +DA 
Sbjct: 9   VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT 68
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 260
                 ++Y V GFPT+ F P G+K    +  GG RDLE    FI+E        K +L+
Sbjct: 69  ANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKEELS 128
Query: 261 STA 263
             +
Sbjct: 129 GPS 131

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLD 200
           +V+VL   NF E  L   K +LVEFYAPWCGHCK LAP Y K A     E  ++ +A +D
Sbjct: 8   HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS 252
           A +  DLA++YGV G+PT+KFF  G+    +EY  GR+ +D V+++ ++ G +
Sbjct: 67  ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASF-KKAKSVLIGKVDCD 83
            + LT+DNF+  V      LVEFYAPWCGHCKKLAPEYEK      K++  + + KVD  
Sbjct: 9   TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT 132
           E   L  ++ V GYPT++ F KG   P  Y GPR    + +Y+  + G+
Sbjct: 69  EQTDLAKRFDVSGYPTLKIFRKG--RPFDYNGPREKYGIVDYMIEQSGS 115

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDA 201
            + LT DNFD++V + +  +LVEFYAPWCGHCK LAP YEK A   +     + +A +DA
Sbjct: 9   TLSLTKDNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 67
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 251
            +  DLA+++ VSG+PTLK F KG     +Y G R+    V ++ E+ G+
Sbjct: 68  TEQTDLAKRFDVSGYPTLKIFRKGRP--FDYNGPREKYGIVDYMIEQSGS 115

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVVANL 199
           V VL   NFD  V DK   VL+EFYAPWCGHCK  AP YEK+A+  TL+D+   + VA +
Sbjct: 19  VWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIAS--TLKDNDPPIAVAKI 75
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQL 259
           DA     LA K+ VSG+PT+K   KG     +Y G R  E+ V+ + E          ++
Sbjct: 76  DATSASMLASKFDVSGYPTIKILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDWTPPPEV 133
Query: 260 TS 261
           TS
Sbjct: 134 TS 135

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           VV L  D+F + +      L EF+APWCGHCK +APEY K   +  + K++ + ++DC E
Sbjct: 16  VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTE 74
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPK-KYEGPRSTEALAEYVNNEGGTNVKIAA 138
           ++ LC ++ + G+P+++ F    +     YEGPR+ EA+ +++  +    V + A
Sbjct: 75  NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVA 129

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANL 199
           S+V  L   N DEIV D  KDVLV +YAPWCGHCK LAPTY+++A  +     DV++A L
Sbjct: 358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 417
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTSRDGKG 257
             D  ++      + G+PT+  +P G K +   Y G R L+    FI E      DGK 
Sbjct: 418 --DHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKA 474

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V VL   NF+++  D+ K+V VEFYAPWCGHCK LAP ++K+   +   +++V+A +D+ 
Sbjct: 251 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 310
Query: 203 KYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 257
             +   E   V  FPTLKFFP   ++   +Y G R L+ F  F+       +DG G
Sbjct: 311 ANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE---SGGQDGAG 361

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V VL   NF+++  D+ K+V VEFYAPWCGHCK LAP ++K+   +   +++V+A +D+ 
Sbjct: 9   VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 68
Query: 203 KYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFI 245
              +  E   V  FPTLKFFP   ++   +Y G R L+ F  F+
Sbjct: 69  --ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANL 199
           +V+ LT D+FD+ VLD     +VEFYAPWCGHCKNL P +   A+      +  V +A +
Sbjct: 8   DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAV 67
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 243
           DA   + LA +YG+ GFPT+K F KG     +Y GGR   D VS
Sbjct: 68  DATVNQVLASRYGIRGFPTIKIFQKGESP-VDYDGGRTRSDIVS 110

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 21  LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLG-ASFKKAKSVLIGK 79
           L   V+ LTE+NF+  + +     ++FYAPWCGHCK LAP +E+L    F     V I +
Sbjct: 3   LGSTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61
Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
           VDC   +++CSKY V+GYPT+  F +G  +  ++ G R  ++L  +V
Sbjct: 62  VDCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 107

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANL 199
           S V+ LT +NFD+ + +      ++FYAPWCGHCK LAPT+E+++   F     V +A +
Sbjct: 5   STVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 62
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
           D    +++  KY V G+PTL  F +G K   E+ GGRDL+    F+
Sbjct: 63  DCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 107

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 19  SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLG-ASFKKAKSVLI 77
           S  +  V+ LTE+NF+  + +     ++FYAPWCGHCK LAP +E+L    F     V I
Sbjct: 3   SGSSGTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKI 61
Query: 78  GKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
            +VDC   +++CSKY V+GYPT+  F +G  +  ++ G R  ++L  +V
Sbjct: 62  AEVDCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 109

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANLD 200
            V+ LT +NFD+ + +      ++FYAPWCGHCK LAPT+E+++   F     V +A +D
Sbjct: 8   TVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 65
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
               +++  KY V G+PTL  F +G K   E+ GGRDL+    F+
Sbjct: 66  CTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 109

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLG-ASFKKAKSVLIGKVDCD 83
           V+ LTE+NF+  + +     ++FYAPWCGHCK LAP +E+L    F     V I +VDC 
Sbjct: 2   VLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
             +++CSKY V+GYPT+  F +G  +  ++ G R  ++L  +V
Sbjct: 61  AERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 102

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANLD 200
            V+ LT +NFD+ + +      ++FYAPWCGHCK LAPT+E+++   F     V +A +D
Sbjct: 1   TVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 58
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
               +++  KY V G+PTL  F +G K   E+ GGRDL+    F+
Sbjct: 59  CTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 102

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 21  LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEK----LGASFKKAKSVL 76
           L  ++  L  +N ++ +     ALV FYA WC   + L P +E+    +   F     V+
Sbjct: 3   LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVV 62
Query: 77  IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 135
             +VDCD+H  +  +Y +  YPT++ F  G    ++Y G RS +ALA+Y+  +    ++
Sbjct: 63  FARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQ 121

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEK----VAAAFTLEDDVVV 196
           S +  L  +N DEI L+ +   LV FYA WC   + L P +E+    +   F  E+ VV 
Sbjct: 5   SEITSLDTENIDEI-LNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248
           A +D D++ D+A++Y +S +PTLK F  G     EY G R ++    +I ++
Sbjct: 64  ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQ 115

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           LT  +FD+ + + +   LVEFYAPWCGHCK L+ T+ K A        V   N D +K K
Sbjct: 22  LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 206 DLAEKYGVSGFPTLKFFPKGNKD----------------GEEYGGGRDLEDFVSF 244
            L  KY V+GFPTL  F     D                 E Y G R L   V F
Sbjct: 82  ALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDF 136

>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like Hypothetical Protein Q4dv70 Length = 127

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 24/120 (20%)
Query: 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV----- 194
           PS VV LT + FD IV+D  KDV V +Y PW  H            AA  L DD+     
Sbjct: 14  PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHS----------VAAMRLWDDLSMSQS 63
Query: 195 --------VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 245
                   V A +D +KY D+ E+  VSGFPT++++ + +K    EY G R L    SF+
Sbjct: 64  QKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           +T D+F++ VL   K VLV+F+A WCG C+ +AP+ E +AA +   D + +  L+ D+  
Sbjct: 10  VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLNIDENP 67
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVS 243
             A KYGV   PTL  +  G       G        RDLEDF++
Sbjct: 68  GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCGHCK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 21  LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGK 79
           ++D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++   ++    + + K
Sbjct: 10  MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAK 67
Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAV 139
           ++ D++     KYG++G PT+  F  G +   K  G  S   L E+++     N+  +A+
Sbjct: 68  LNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD----ANLAGSAM 122
Query: 140 PSNVVVL 146
            S V+VL
Sbjct: 123 ESTVMVL 129

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 14  IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 71
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 72  QNPGTAPKYGIRGIPTLLLFKNG 94

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  E++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 150 NFDEIVLDKSK----DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
             D  +L +++     +LV+F+APWCG C+ +AP ++  AAA TL   V +A +D   + 
Sbjct: 51  GIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQ--AAAATLAGQVRLAKIDTQAHP 108
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 251
            +A ++ + G P    F KG ++     G R   + V F+  K G 
Sbjct: 109 AVAGRHRIQGIPAFILFHKG-RELARAAGARPASELVGFVRGKLGA 153

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233
           +    A KYG+ G PTL  F  G+    + G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGDVAATKVG 92

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 208
           D F  +VL+ S  VLV+F+APWCG C+ +AP  +++A  +  +D +    L+ D+  ++A
Sbjct: 9   DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTDESPNVA 66
Query: 209 EKYGVSGFPTLKFFPKGNKDGEEYGGG 235
            +YG+   PT+  F KG K  E   G 
Sbjct: 67  SEYGIRSIPTIMVF-KGGKKCETIIGA 92

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 10/109 (9%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           NV V+T +N+ E++     D ++EFYAPWC  C+NL P +E   A +  + +V +A +D 
Sbjct: 8   NVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESF-AEWGEDLEVNIAKVDV 63
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE--EYGGGRDLEDFVSFINEK 248
            +   L+ ++ ++  PT+       KDGE   Y G R  +DF++FI++K
Sbjct: 64  TEQPGLSGRFIINALPTIYHC----KDGEFRRYQGPRTKKDFINFISDK 108

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +D ++ LT+D+FE +V +  GA LV+F+A WCG CK +AP  +++   ++   +V   K+
Sbjct: 1   SDKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV--AKL 58
Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           + D++     KYG++G PT+  F  G +   K  G  S   L E+++
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 104

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+F+  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  + +A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 5   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 62
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 63  QNPGTAPKYGIRGTPTLLLFKNG 85

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ +T D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 40  DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
           D+ A+V+FYA WCG CK +AP  E+L   +  A  + I KV+ D+   L   +G+QG PT
Sbjct: 51  DKPAIVDFYADWCGPCKMVAPILEELSKEY--AGKIYIYKVNVDKEPELARDFGIQGIPT 108
Query: 100 IQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           I WF     EP+   G  S E L  Y++
Sbjct: 109 I-WFVPMKGEPQVNMGALSKEQLKGYID 135

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K  +V+FYA WCG CK +AP  E+++  +     + +  ++ DK  +LA  +G+ G PT+
Sbjct: 52  KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 220 KFFP 223
            F P
Sbjct: 110 WFVP 113

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG C+ +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT ++FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 21  LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGK 79
           L    + LT   F ++V Q +   +V+FYAPWCG C+  APE+E L    K    V  GK
Sbjct: 1   LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK--GKVRAGK 58
Query: 80  VDCDEHKSLCSKYGVQGYPTIQWF 103
           VDC  +   C K G++ YP+++ +
Sbjct: 59  VDCQAYPQTCQKAGIKAYPSVKLY 82

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
           +P   + LT   F+E VL      +V+FYAPWCG C+N AP +E +A    ++  V    
Sbjct: 1   LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLAR--MIKGKVRAGK 58
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFP--KGNKD-GEEYGGGRDLEDFVSFINEKCGT 251
           +D   Y    +K G+  +P++K +   +  K   EE    RD +   + I  K  T
Sbjct: 59  VDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET 114

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+   PTL  F  G
Sbjct: 62  QNPGTAPKYGIRSIPTLLLFKNG 84

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG  K +AP  +++A  +  +  + VA L+ D
Sbjct: 24  IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVAKLNID 81
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 82  QNPGTAPKYGIRGIPTLLLFKNG 104

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           +V+ +T +NF++ VL   K VLV+F+APWCG C+ +AP  E++A  +  E  V V  ++ 
Sbjct: 2   SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNV 59
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKG 225
           D+  + A +YG+   PTL  F  G
Sbjct: 60  DENPNTAAQYGIRSIPTLLLFKNG 83

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WC  CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG  K +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           ++ LT D+FD  VL     +LV+F+A WCG  CK +AP  +++A  +  +  + VA L+ 
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEY--QGKLTVAKLNI 61
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKG 225
           D+    A KYG+ G PTL  F  G
Sbjct: 62  DQNPGTAPKYGIRGIPTLLLFKNG 85

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 40  DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 99
           D+ A+V+FYA WCG CK +AP  E+L   +  A  + I KV+ D+   L   +G+Q  PT
Sbjct: 51  DKPAIVDFYADWCGPCKMVAPILEELSKEY--AGKIYIYKVNVDKEPELARDFGIQSIPT 108
Query: 100 IQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           I WF     EP+   G  S E L  Y++
Sbjct: 109 I-WFVPMKGEPQVNMGALSKEQLKGYID 135

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K  +V+FYA WCG CK +AP  E+++  +     + +  ++ DK  +LA  +G+   PT+
Sbjct: 52  KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 220 KFFP 223
            F P
Sbjct: 110 WFVP 113

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WCG CK +A   +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           S  + +T  +F   VL  +K VLV+F+A WCG CK +AP  E++A       D+ VA LD
Sbjct: 7   SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTVAKLD 64
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 246
            D   + A  + V   PTL  F  G       G        R+L D V  +N
Sbjct: 65  VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 116

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           S  + +T  +F   VL  +K VLV+F+A WCG CK +AP  E++A       D+ VA LD
Sbjct: 12  SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLD 69
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 246
            D   + A  + V   PTL  F  G       G        R+L D V  +N
Sbjct: 70  VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
           + LT+ NF++ +  D+  LV+F+A WCG C+ +AP  E+   +   A  V + K++ DE+
Sbjct: 3   MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEA--HADKVTVAKLNVDEN 60
Query: 86  KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122
               S++G+   PT+  F KG    K+  G +  E L
Sbjct: 61  PETTSQFGIMSIPTLILF-KGGRPVKQLIGYQPKEQL 96

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           + LT  NF +  +   K VLV+F+A WCG C+ +AP  E+ A A    D V VA L+ D+
Sbjct: 3   MTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
             +   ++G+   PTL  F  G
Sbjct: 60  NPETTSQFGIMSIPTLILFKGG 81

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
           + LT+ NF++ +  D+  LV+F+A WCG C+ +AP  E+   +   A  V + K++ DE+
Sbjct: 3   MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEA--HADKVTVAKLNVDEN 60
Query: 86  KSLCSKYGVQGYPTIQWFPKGSLEPKK 112
               S++G+   PT+  F  G  EP K
Sbjct: 61  PETTSQFGIMSIPTLILFKGG--EPVK 85

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           + LT  NF +  +   K VLV+F+A WCG C+ +AP  E+ A A    D V VA L+ D+
Sbjct: 3   MTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
             +   ++G+   PTL  F  G
Sbjct: 60  NPETTSQFGIMSIPTLILFKGG 81

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+++F+A WCG CK ++P   +++  F   D+VVV  +D D+ +D+A +Y +S  PT 
Sbjct: 26  KLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTF 83
Query: 220 KFFPKGNKDGEEYGG--GRDLEDFV 242
            F   G K  EE+ G   + LED +
Sbjct: 84  VFLKNGVK-VEEFAGANAKRLEDVI 107

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+++F+A WCG CK ++P   +++  F   D+VVV  +D D+ +D+A +Y +S  PT 
Sbjct: 21  KLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTF 78
Query: 220 KFFPKGNKDGEEYGG--GRDLEDFV 242
            F   G K  EE+ G   + LED +
Sbjct: 79  VFLKNGVK-VEEFAGANAKRLEDVI 102

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL-IGKVDC 82
           +++ L    F+  V       V FY+P C HC  LAP + +     K+   +L IG V+C
Sbjct: 98  EIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFA---KEVDGLLRIGAVNC 154
Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEY 125
            + + LC   GV  YP++  F  G +   KY G RS E+L  +
Sbjct: 155 GDDRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAF 196

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ L    FD  V +  +   V FY+P C HC +LAPT+ + A        +   N   D
Sbjct: 99  IITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD 157
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 244
           +   L    GV+ +P+L  F  G     +Y G R  E  V+F
Sbjct: 158 RM--LCRMKGVNSYPSLFIFRSGMA-AVKYNGDRSKESLVAF 196

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           L + NFDE +  K+K V+V+F+A WC  C  LAP  E++A  +     V    L+ ++ +
Sbjct: 11  LNSKNFDEFI-TKNKIVVVDFWAEWCAPCLILAPVIEELANDYP---QVAFGKLNTEESQ 66
Query: 206 DLAEKYGVSGFPTLKFFPKG 225
           D+A +YG+   PT+ FF  G
Sbjct: 67  DIAMRYGIMSLPTIMFFKNG 86

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           VV   E  F +EV      LV+F+APWCG C+ ++P  E+L  +   A  + + KV+ DE
Sbjct: 35  VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEEL--ARDHAGRLKVVKVNVDE 92
Query: 85  HKSLCSKYGVQGYPTIQWFPKGS 107
           H  L ++YGV+  PT+  F +G+
Sbjct: 93  HPGLAARYGVRSVPTLVLFRRGA 115

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222
           LV+F+APWCG C+ ++P  E++A        VV  N+  D++  LA +YGV   PTL  F
Sbjct: 54  LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNV--DEHPGLAARYGVRSVPTLVLF 111
Query: 223 PKG 225
            +G
Sbjct: 112 RRG 114

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
           +A  +D  +    K V+V+F+A WCG CK +AP  EK A  ++   D     LD D+  D
Sbjct: 14  SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 70
Query: 207 LAEKYGVSGFPTLKFFPKGNKD 228
           +A+K  VS  PTL F+ KG K+
Sbjct: 71  VAQKAEVSSMPTLIFY-KGGKE 91

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
           +A  +D  +    K V+V+F+A WCG CK +AP  EK A  ++   D     LD D+  D
Sbjct: 7   SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 63
Query: 207 LAEKYGVSGFPTLKFFPKGNKD 228
           +A+K  VS  PTL F+ KG K+
Sbjct: 64  VAQKAEVSSMPTLIFY-KGGKE 84

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  VL     +LV+F+A WC   K +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KYG+ G PTL  F  G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
           + LT+ NF++ +  D   LV+F+A WCG C+ +AP  E+   +   A  V + K++ DE+
Sbjct: 3   MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEA--HADKVTVAKLNVDEN 60
Query: 86  KSLCSKYGVQGYPTIQWFPKGSLEPKK 112
               S++G+   PT+  F  G  EP K
Sbjct: 61  PETTSQFGIMSIPTLILFKGG--EPVK 85

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           + LT  NF +  +     VLV+F+A WCG C+ +AP  E+ A A    D V VA L+ D+
Sbjct: 3   MTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
             +   ++G+   PTL  F  G
Sbjct: 60  NPETTSQFGIMSIPTLILFKGG 81

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
           + LT+ NF++ +  D   LV+F+A WCG C+ +AP  E+   +   A  V + K++ DE+
Sbjct: 3   MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEA--HADKVTVAKLNVDEN 60
Query: 86  KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122
               S++G+   PT+  F KG    K+  G +  E L
Sbjct: 61  PETTSQFGIMSIPTLILF-KGGRPVKQLIGYQPKEQL 96

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           + LT  NF +  +     VLV+F+A WCG C+ +AP  E+ A A    D V VA L+ D+
Sbjct: 3   MTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
             +   ++G+   PTL  F  G
Sbjct: 60  NPETTSQFGIMSIPTLILFKGG 81

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 138 AVPSNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 195
            + S ++ L  D   E +L++ K+  V+V+F+A WCG CK +AP +++++  +    D +
Sbjct: 10  VIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAI 65
Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV 242
              +D DK ++ A KY +S  PT      G K G+  G     +ED +
Sbjct: 66  FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMI 113

>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase Related Chaperone Erp29 Length = 240

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 26/216 (12%)
Query: 155 VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-----LAE 209
           V+ KSK VLV+F   +    K     ++++A      DD++VA +    Y D     L+E
Sbjct: 18  VIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSE 75
Query: 210 KYGV--SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE-KCGTSR---DGKGQLTSTA 263
           KY +    +P    F    +DG       D E+ V +    K G  +    G+G      
Sbjct: 76  KYKLDKESYPVFYLF----RDG-------DFENPVPYTGAVKVGAIQRWLKGQGVYLGMP 124
Query: 264 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 322
           G +   DAL  EF+ ASG E ++A+  + +  +  ++ +  +  + YLK+    +D+G D
Sbjct: 125 GCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGED 184
Query: 323 YAKKEIDRLQRMLDKS-ISAAKADEFVLKKNILSTF 357
           +   E+ R+ R+++K+ +S  K +E     NIL+ F
Sbjct: 185 FPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 220

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
           S ++ L  D   E +L++ K+  V+V+F+A WCG CK +AP +++++  +    D +   
Sbjct: 4   SKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVK 59
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV 242
           +D DK ++ A KY +S  PT      G K G+  G     +ED +
Sbjct: 60  VDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMI 104

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
           ++ E VL+    V+V+F+APWCG CK +AP  +++A  ++    + V  L+ D+   +A 
Sbjct: 9   SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIAT 66
Query: 210 KYGVSGFPTLKFFPKGNK 227
           +Y +   PT+ FF  G +
Sbjct: 67  QYNIRSIPTVLFFKNGER 84

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           +V +T+ +F+ +V +    LV+F+A WCG CK +AP  E+L A ++    +L  K+D DE
Sbjct: 6   IVKVTDADFDSKV-ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
           + S  +KY V   PT+  F  G  +P  K  G +  E LAE ++
Sbjct: 63  NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 104

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           +V +T  +FD  V  +S   LV+F+A WCG CK +AP  E++AA +  + D++   LD D
Sbjct: 6   IVKVTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVD 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
           +    A KY V   PTL  F  G 
Sbjct: 62  ENPSTAAKYEVMSIPTLIVFKDGQ 85

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           +V +T+ +F+ +V +    LV+F+A WCG CK +AP  E+L A ++    +L  K+D DE
Sbjct: 5   IVKVTDADFDSKV-ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVDE 61
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
           + S  +KY V   PT+  F  G  +P  K  G +  E LAE ++
Sbjct: 62  NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 103

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           +V +T  +FD  V  +S   LV+F+A WCG CK +AP  E++AA +  + D++   LD D
Sbjct: 5   IVKVTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVD 60
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
           +    A KY V   PTL  F  G 
Sbjct: 61  ENPSTAAKYEVMSIPTLIVFKDGQ 84

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
           ++ E VL+    V+V+F+APWCG CK +AP  +++A  ++    + V  L+ D+   +A 
Sbjct: 8   SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIAT 65
Query: 210 KYGVSGFPTLKFFPKGNK 227
           +Y +   PT+ FF  G +
Sbjct: 66  QYNIRSIPTVLFFKNGER 83

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           S  + +T  +F   VL  +K VLV+F+A WCG  K +AP  E++A       D+ VA LD
Sbjct: 9   SATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERA--TDLTVAKLD 66
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 246
            D   + A  + V   PTL  F  G       G        R+L D V  +N
Sbjct: 67  VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 118

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           +V +   FD I+  +++ V+V+F+A WCG CK +AP YE+ +  +T    +V   +D D+
Sbjct: 12  IVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDE 67
Query: 204 YKDLAEKYGVSGFPTLKFFPKGN 226
             ++ EK  ++  PT K +  G+
Sbjct: 68  VSEVTEKENITSMPTFKVYKNGS 90

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           +V +T+ +F+ +V +    LV+F+A WCG CK +AP  E+L A ++    +L  K+D DE
Sbjct: 6   IVKVTDADFDSKV-ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
           + S  +KY V   PT+  F  G  +P  K  G +  E LAE ++
Sbjct: 63  NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 104

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           +V +T  +FD  V  +S   LV+F+A WCG CK +AP  E++AA +  + D++   LD D
Sbjct: 6   IVKVTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVD 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
           +    A KY V   PTL  F  G 
Sbjct: 62  ENPSTAAKYEVMSIPTLIVFKDGQ 85

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
           TA  FD  +  + K V+V+FYA WCG CK +AP  EK +  +   D      LD D+  D
Sbjct: 7   TASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGD 62
Query: 207 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
           +A+K  VS  PTL  F  G +  +  G  
Sbjct: 63  VAQKNEVSAMPTLLLFKNGKEVAKVVGAN 91

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
           TA  FD  +  + K V+V+FYA WCG CK +AP  EK +  +   D      LD D+  D
Sbjct: 13  TASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGD 68
Query: 207 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
           +A+K  VS  PTL  F  G +  +  G  
Sbjct: 69  VAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           +T  NFDE  L +   VLV+F+A WC  C+ +AP  E++A  +  E  ++VA LD D+  
Sbjct: 7   VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENP 63
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGE 230
             A +Y V   PT+  F    KDG+
Sbjct: 64  KTAXRYRVXSIPTVILF----KDGQ 84

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           +T  NFDE  L +   VLV+F+A WC  C+ +AP  E++A  +  E  ++VA LD D+  
Sbjct: 6   VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENP 62
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGE 230
             A +Y V   PT+  F    KDG+
Sbjct: 63  KTAXRYRVXSIPTVILF----KDGQ 83

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++ LT D+FD  ++     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D
Sbjct: 4   IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKG 225
           +    A KY   G PTL  F  G
Sbjct: 62  QNPGTAPKYIERGIPTLLLFKNG 84

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
           D  +VLTE+NF++ +  ++  LV+ +A WC  C    P Y+K+   + K K+V  G+++ 
Sbjct: 4   DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKY-KGKAVF-GRLNV 61
Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSL 108
           DE++ +  KY V   PT   F  G L
Sbjct: 62  DENQKIADKYSVLNIPTTLIFVNGQL 87

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           +VLT +NFDE++ + +K VLV+ +A WC  C    P Y+KVA  +  +   V   L+ D+
Sbjct: 7   LVLTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKY--KGKAVFGRLNVDE 63
Query: 204 YKDLAEKYGVSGFPTLKFFPKG 225
            + +A+KY V   PT   F  G
Sbjct: 64  NQKIADKYSVLNIPTTLIFVNG 85

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           +V  T+ +F  E  +    L +F+APWCG CK +AP  E+L         + I K+D DE
Sbjct: 3   IVKATDQSFSAETSEGV-VLADFWAPWCGPCKMIAPVLEELDQEM--GDKLKIVKIDVDE 59
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           ++    KYGV   PT+     G +      G +  EAL E VN
Sbjct: 60  NQETAGKYGVMSIPTLLVLKDGEVVETSV-GFKPKEALQELVN 101

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
           VL +F+APWCG CK +AP  E++     + D + +  +D D+ ++ A KYGV   PTL  
Sbjct: 20  VLADFWAPWCGPCKMIAPVLEELDQ--EMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 222 FPKGNKDGE 230
                KDGE
Sbjct: 78  L----KDGE 82

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGAL-VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL-IGK 79
           +D + +L  D     V   R A  VEF+A WCGHC   AP +  L    K  +  L +  
Sbjct: 11  SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAA 70
Query: 80  VDCDE--HKSLCSKYGVQGYPTIQWF 103
           +DC E  + ++C  + + G+PT+++F
Sbjct: 71  LDCAEETNSAVCRDFNIPGFPTVRFF 96

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 131 GTNVKIAAVPSN-VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF- 188
           G+++     PS+ + +L AD     VL       VEF+A WCGHC   APT+  +A    
Sbjct: 1   GSHMSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVK 60
Query: 189 TLEDDVVVANLDADKYKDLA--EKYGVSGFPTLKFFPKGNKDG 229
                + +A LD  +  + A    + + GFPT++FF     +G
Sbjct: 61  AWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNG 103

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 26  VVLTEDNFEKEVGQDRGAL--VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           V+ T  + EK + +++G L  V+F+A WCG C+ +AP+ E L    K+   V   KVD D
Sbjct: 3   VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALA---KEIPEVEFAKVDVD 59
Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 119
           +++   +KY V   PT  +   G  E  ++ G   T
Sbjct: 60  QNEEAAAKYSVTAMPTFVFIKDGK-EVDRFSGANET 94

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 144 VVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V+ TA + ++++  +K + ++V+F+A WCG C+N+AP  E +A       +V  A +D D
Sbjct: 3   VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVD 59
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
           + ++ A KY V+  PT  F   G K+ + + G  +
Sbjct: 60  QNEEAAAKYSVTAMPTFVFIKDG-KEVDRFSGANE 93

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWC--------------GHCKNLAPTYEKVAAAF 188
           ++ LT D+FD  VL     +LV+F+A WC              G CK +AP  +++A  +
Sbjct: 5   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 189 TLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 225
             +  + VA L+ D+    A KYG+ G PTL  F  G
Sbjct: 65  --QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 216
           D  K V+++F A WCG C+ +AP + + A  F      +   +D D+ KD+AE Y V   
Sbjct: 26  DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEAM 82
Query: 217 PTLKFFPKGNKDGEEYGGGRD 237
           PT  F   G K     GG +D
Sbjct: 83  PTFLFIKDGEKVDSVVGGRKD 103

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
           +F + V++    V+V+F+A WCG CK L P  EK+ A       VV+A +D D + DLA 
Sbjct: 22  DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVA--KQHGKVVMAKVDIDDHTDLAI 79
Query: 210 KYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 250
           +Y VS  PT+     G+   +++ G +D +   +F+ +  G
Sbjct: 80  EYEVSAVPTVLAMKNGDV-VDKFVGIKDEDQLEAFLKKLIG 119

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
           +A  +D  +    K V+V+F+A WCG  K +AP  EK A  ++   D     LD D+  D
Sbjct: 15  SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 71
Query: 207 LAEKYGVSGFPTLKFFPKGNKD 228
           +A+K  VS  PTL F+ KG K+
Sbjct: 72  VAQKAEVSSMPTLIFY-KGGKE 92

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
           V+ + D F++  G D+  +++F+A WCG CK + P +EK+  +      V   KVD DE 
Sbjct: 19  VISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT-PAGDKVGFYKVDVDEQ 77
Query: 86  KSLCSKYGVQGYPTIQWFPKG 106
             +  + G++  PT  +F  G
Sbjct: 78  SQIAQEVGIRAMPTFVFFKNG 98

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           V+ + D F + V    K V+++F+A WCG CK + P +EK++      D V    +D D+
Sbjct: 19  VISSYDQFKQ-VTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT-PAGDKVGFYKVDVDE 76
Query: 204 YKDLAEKYGVSGFPTLKFFPKGNK 227
              +A++ G+   PT  FF  G K
Sbjct: 77  QSQIAQEVGIRAMPTFVFFKNGQK 100

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASESEVKSMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +FF KG K GE  G  +  E   + INE
Sbjct: 78  QFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +FF KG K GE  G  +  E   + INE
Sbjct: 78  QFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
           +A  +D  +    K V+V+F+A WCG  K +AP  EK A  ++   D     LD D+  D
Sbjct: 7   SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 63
Query: 207 LAEKYGVSGFPTLKFFPKGNKD 228
           +A+K  VS  PTL F+ KG K+
Sbjct: 64  VAQKAEVSSMPTLIFY-KGGKE 84

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218
           +K V+++FYA WCG CK +AP  E+++ + +   DVV   +D D+ +D+A+   ++  PT
Sbjct: 20  NKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECEDIAQDNQIACMPT 76
Query: 219 LKFFPKGNKDGEEYGGGRD 237
             F   G K     G   D
Sbjct: 77  FLFMKNGQKLDSLSGANYD 95

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASEXEVKCMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +FF KG K GE  G  +  E   + INE
Sbjct: 78  QFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +FF KG K GE  G  +  E   + INE
Sbjct: 78  QFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
           LD + D  V+V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V
Sbjct: 15  LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEV 71
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
              PT +FF KG K GE  G  +  E   + INE
Sbjct: 72  KATPTFQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           +V +T+ +F+ +V +    LV+F+A WCG  K +AP  E+L A ++    +L  K+D DE
Sbjct: 6   IVKVTDADFDSKV-ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
           + S  +KY V   PT+  F  G  +P  K  G +  E LAE ++
Sbjct: 63  NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 104

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           +V +T  +FD  V  +S   LV+F+A WCG  K +AP  E++AA +  + D++   LD D
Sbjct: 6   IVKVTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVD 61
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
           +    A KY V   PTL  F  G 
Sbjct: 62  ENPSTAAKYEVMSIPTLIVFKDGQ 85

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
           LD + D  V+V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A KYG+
Sbjct: 15  LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVAPKYGI 71
Query: 214 SGFPTLKFFPKGNKDGEEYGG 234
            G PTL  F  G     + G 
Sbjct: 72  RGIPTLLLFKNGEVAATKVGA 92

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
           ++ E VL+    V+V+F+APWCG  K +AP  +++A  ++    + V  L+ D+   +A 
Sbjct: 9   SWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIAT 66
Query: 210 KYGVSGFPTLKFFPKGNK 227
           +Y +   PT+ FF  G +
Sbjct: 67  QYNIRSIPTVLFFKNGER 84

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           V+ L   NF+  +     A+V+F+A WC  C  LAP  E+L   + +   V  GK++ DE
Sbjct: 1   VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDE 57
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEP 110
           +  + ++YGV   PT+ +F  G  EP
Sbjct: 58  NPDIAARYGVMSLPTVIFFKDG--EP 81

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V+ L + NFD   L   +  +V+F+A WC  C  LAP  E++A  +     V    L++D
Sbjct: 1   VIHLDSKNFDSF-LASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP---QVGFGKLNSD 56
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           +  D+A +YGV   PT+ FF    KDGE
Sbjct: 57  ENPDIAARYGVMSLPTVIFF----KDGE 80

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
           LD + D  V+V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V
Sbjct: 15  LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEV 71
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
              PT +FF KG K GE  G  +  E   + INE
Sbjct: 72  KCTPTFQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           +V  T+ +F  E  +    L +F+APWCG  K +AP  E+L         + I K+D DE
Sbjct: 3   IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVDE 59
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           ++    KYGV   PT+     G +      G +  EAL E VN
Sbjct: 60  NQETAGKYGVMSIPTLLVLKDGEVVETSV-GFKPKEALQELVN 101

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
           VL +F+APWCG  K +AP  E++     + D + +  +D D+ ++ A KYGV   PTL  
Sbjct: 20  VLADFWAPWCGPSKMIAPVLEELDQ--EMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 222 FPKGNKDGE 230
                KDGE
Sbjct: 78  L----KDGE 82

>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei Length = 140

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           S+++      + + V D  K V+V FY+P C +CK   P +E+ A  +      V   ++
Sbjct: 6   SSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYG--SSAVFGRIN 63
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233
                  AEKYGV G PT KFF  G    E+ G
Sbjct: 64  IATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVG 96

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
           TA  FD  +  + K V+V+FYA WCG  K +AP  EK +  +   D      LD D+  D
Sbjct: 13  TASEFDSAIA-QDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD---FYKLDVDELGD 68
Query: 207 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
           +A+K  VS  PTL  F  G +  +  G  
Sbjct: 69  VAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
           LD + D  V+V+F A WCG CK + P +  ++  ++   +V+   +D +  +D+A +  V
Sbjct: 15  LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVNDCQDVASECEV 71
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRD 237
              PT +FF KG K GE  G  ++
Sbjct: 72  KCMPTFQFFKKGQKVGEFSGANKE 95

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           +V  T+ +F  E  +    L +F+APWCG  K +AP  E+L         + I K+D DE
Sbjct: 3   IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVDE 59
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           ++    KYGV   PT+     G +      G +  EAL E VN
Sbjct: 60  NQETAGKYGVMSIPTLLVLKDGEVVETSV-GFKPKEALQELVN 101

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
           VL +F+APWCG  K +AP  E++     + D + +  +D D+ ++ A KYGV   PTL  
Sbjct: 20  VLADFWAPWCGPSKMIAPVLEELDQ--EMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 222 FPKGNKDGE 230
                KDGE
Sbjct: 78  L----KDGE 82

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 4   YQIWLALGTLTLFFVSALADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPE 61
           Y + LALGT  +    A+   V  + +D F   V    D+  +++ +  WCG CK +AP+
Sbjct: 2   YYLELALGTQEM---EAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPK 58
Query: 62  YEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSL 108
           YEKL   +     V+  K+DC+ E+K+L  + G++  PT +   + S+
Sbjct: 59  YEKLAEEY---LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 103

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 125 YVNNEGGTNVKIAAVPSNVVVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEK 183
           Y+    GT  ++ A+   V  +  D F  IV     K V+++ +  WCG CK +AP YEK
Sbjct: 3   YLELALGTQ-EMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK 61
Query: 184 VAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
           +A  +    DV+   LD ++  K LA++ G+   PT K   + +  GE  G   D
Sbjct: 62  LAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 113

>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN DISULFIDE Length = 519

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 22  ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL-IGK 79
           +D + +L  D+    V G      VEF+A WCGH    AP +++L    K  +  L +  
Sbjct: 11  SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAV 70
Query: 80  VDCDE--HKSLCSKYGVQGYPTIQWF 103
           +DC E  + ++C ++ + G+PT+++F
Sbjct: 71  LDCAEETNSAVCREFNIAGFPTVRFF 96

>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN DISULFIDE Length = 519

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA---AAFTLEDDVVVANL 199
           + +L AD+    VL  S    VEF+A WCGH    APT++++A     +    ++ V + 
Sbjct: 14  LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDC 73
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDG 229
             +    +  ++ ++GFPT++FF    K+G
Sbjct: 74  AEETNSAVCREFNIAGFPTVRFFQAFTKNG 103

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 144 VVLTADNFDEI--VLDKSKD----VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 197
           VV+   N DE    + K+K+    V+++F A WCG C+ +AP + + A  F      V  
Sbjct: 15  VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFL 71
Query: 198 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
            +D D+ K++AEKY V   PT  F   G +  +  G  +D
Sbjct: 72  KVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 111

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           +V +T+ +F+ +V +    LV+F+A  CG CK +AP  E+L A ++    +L  K+D DE
Sbjct: 5   IVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADIL--KLDVDE 61
Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEALAEYVN 127
           + S  +KY V   PT+  F  G  +P  K  G +  E LAE ++
Sbjct: 62  NPSTAAKYEVMSIPTLIVFKDG--QPVDKVVGFQPKENLAEVLD 103

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           +V +T  +FD  V  +S   LV+F+A  CG CK +AP  E++AA +  + D++   LD D
Sbjct: 5   IVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADIL--KLDVD 60
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGN 226
           +    A KY V   PTL  F  G 
Sbjct: 61  ENPSTAAKYEVMSIPTLIVFKDGQ 84

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFY--APWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +++V + E N ++ + Q     V FY  +    HC +L P  E L A +      ++ K+
Sbjct: 7   ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKL 64
Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEAL 122
           DCD  + + +++G++  PT+  F  G  +P   ++GP+  EA+
Sbjct: 65  DCDAEQMIAAQFGLRAIPTVYLFQNG--QPVDGFQGPQPEEAI 105

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 142 NVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199
           N+V +   N  + VL++S    VL  F++    HC  L P  E +AA +      ++A L
Sbjct: 8   NIVNINESNLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN--GQFILAKL 64
Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGN 226
           D D  + +A ++G+   PT+  F  G 
Sbjct: 65  DCDAEQMIAAQFGLRAIPTVYLFQNGQ 91

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+V+F A WCG  K + P +  ++  ++   +V+   +D D  +D+A +  V   PT 
Sbjct: 21  KLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDSQDVASESEVKSMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRD 237
           +FF KG K GE  G  ++
Sbjct: 78  QFFKKGQKVGEFSGANKE 95

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFY--APWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
            ++V + E N ++ + Q     V FY  +    HC +L P  E L A +      ++ K+
Sbjct: 7   QNIVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHG--QFILAKL 64
Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEP-KKYEGPRSTEAL 122
           DCD  + + +++G++  PT+  F  G  +P   ++GP+  EA+
Sbjct: 65  DCDAEQXIAAQFGLRAIPTVYLFQNG--QPVDGFQGPQPEEAI 105

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
            N+V +   N  +  L++S    VL  F++    HC  L P  E +AA +      ++A 
Sbjct: 7   QNIVNINESNLQQ-TLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQY--HGQFILAK 63
Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGN 226
           LD D  + +A ++G+   PT+  F  G 
Sbjct: 64  LDCDAEQXIAAQFGLRAIPTVYLFQNGQ 91

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 32  NFEKEVGQ-----DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
           NFEK   +     D+ A+V+FYA WCG CK +AP  ++L   +     ++I KVD ++ +
Sbjct: 25  NFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYD--GQIVIYKVDTEKEQ 82
Query: 87  SLCSKYGVQGYPTIQWFP 104
            L   +G++  P+I + P
Sbjct: 83  ELAGAFGIRSIPSILFIP 100

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 209
           N +E   +  K  +V+FYA WCG CK +AP  +++A  +  +  +V+  +D +K ++LA 
Sbjct: 29  NPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY--DGQIVIYKVDTEKEQELAG 86
Query: 210 KYGVSGFPTLKFFPKGNK 227
            +G+   P++ F P   K
Sbjct: 87  AFGIRSIPSILFIPMEGK 104

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
           +V+F A WCG C+ +AP +  L    KK  +VL  KVD DE KS+ S + +Q  PT  + 
Sbjct: 42  VVDFTASWCGPCRFIAPFFADLA---KKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFL 98
Query: 104 PKGSL 108
            +G +
Sbjct: 99  KEGKI 103

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
           V+V+F A WCG C+ +AP +  +A       +V+   +D D+ K +A  + +   PT  F
Sbjct: 41  VVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQAMPTFMF 97
Query: 222 FPKGNKDGEEYGGGRD 237
             +G    +  G  +D
Sbjct: 98  LKEGKILDKVVGAKKD 113

>pdb|1THX|A Chain A, Thioredoxin-2 Length = 115

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
            A+   V+ +T   F+  VL   + VLV F+A WCG C+ ++P      AA T  D + V
Sbjct: 3   TAMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLIN--LAANTYSDRLKV 60
Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246
             L+ D      +KY V G P L+   KG +  +   G    +  +SF++
Sbjct: 61  VKLEIDPNPTTVKKYKVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLD 109

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
           LD + D  V+V+F A WCG  K + P +  ++  ++   +V+   +D D  +D+A +  V
Sbjct: 26  LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEV 82
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
              PT +FF KG K GE  G  +  E   + INE
Sbjct: 83  KSMPTFQFFKKGQKVGEFSGANK--EKLEATINE 114

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 136 IAAVPSNVVVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 194
           + A+   V  +  D F  IV     K V+++ +  WCG CK +AP YEK+A  +    DV
Sbjct: 1   MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DV 57
Query: 195 VVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
           +   LD ++  K LA++ G+   PT K   + +  GE  G   D
Sbjct: 58  IFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 101

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 156 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
           LD + D  V+V+F A WCG  K + P +  ++  ++   +V+   +D D  +D+A +  V
Sbjct: 15  LDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEV 71
Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
              PT +FF KG K GE  G  +  E   + INE
Sbjct: 72  KATPTFQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+++F A WCG C+ +AP +  +A  F    + V   +D D+ K +AE++ V   PT 
Sbjct: 35  KLVVIDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTF 91
Query: 220 KFFPKGNKDGEEYGGGRD 237
            F  +G+      G  ++
Sbjct: 92  LFMKEGDVKDRVVGAIKE 109

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+V+F A WCG  K + P +  ++  ++   +V+   +D D  +D+A +  V   PT 
Sbjct: 21  KLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKRMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +FF KG K GE  G  +  E   + INE
Sbjct: 78  QFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           +V+  T +  +K +  D   +++F+APWCG C+  AP + +  A  ++A  V   KV+ +
Sbjct: 39  EVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAA--ERAGKVRFVKVNTE 96
Query: 84  EHKSLCSKYGVQGYPTIQWFPKG 106
              +L +++ ++  PTI  +  G
Sbjct: 97  AEPALSTRFRIRSIPTIXLYRNG 119

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V+  TA+  D+++ D    V ++F+APWCG C++ AP + + AA    +   V  N +A+
Sbjct: 40  VINATAETLDKLLQDDLPXV-IDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE 98
Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 254
               L+ ++ +   PT+  +  G K  +   G      F ++++E+   SRD
Sbjct: 99  PA--LSTRFRIRSIPTIXLYRNG-KXIDXLNGAVPKAPFDNWLDEQ--LSRD 145

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC 89
           +++FEK  G  +  +V+F A WC  CK +AP + +L    KK  +V   KVD DE K++ 
Sbjct: 16  KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELA---KKFPNVTFLKVDVDELKAVA 72
Query: 90  SKYGVQGYPTIQWFPKGSL 108
            ++ V+  PT  +   G L
Sbjct: 73  EEWNVEAMPTFIFLKDGKL 91

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218
            K ++V+F A WC  CK +AP + ++A  F    +V    +D D+ K +AE++ V   PT
Sbjct: 26  QKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 219 LKFFPKGNKDGEEYGGGRD 237
             F   G    +  G  +D
Sbjct: 83  FIFLKDGKLVDKTVGADKD 101

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 153 EIVLDKSKD----VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 208
           E +L++ K+    VLV+F+A WCG C+ L      +A A     DV    +D DK  + A
Sbjct: 13  EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEA---NKDVTFIKVDVDKNGNAA 69
Query: 209 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 242
           + YGVS  P L FF K  K+G E    + L+ FV
Sbjct: 70  DAYGVSSIPAL-FFVK--KEGNEI---KTLDQFV 97

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           ++  + +++ +F+++V +  G  LV+F+A WCG CK + P   ++G  F  A  V + KV
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEF--AGKVTVAKV 58
Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKK 112
           + D++    + Y V+  PT+     G +  KK
Sbjct: 59  NIDDNPETPNAYQVRSIPTLMLVRDGKVIDKK 90

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           + + ++  +FD+ VL  S  VLV+F+A WCG CK + P   ++   F     V VA ++ 
Sbjct: 3   HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNI 60
Query: 202 DKYKDLAEKYGVSGFPTLKFFPKG 225
           D   +    Y V   PTL     G
Sbjct: 61  DDNPETPNAYQVRSIPTLMLVRDG 84

>pdb|1G7D|A Chain A, Nmr Structure Of Erp29 C-Domain Length = 106

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 264 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 322
           G + + DAL  +F+ AS  E ++A+  + + G+  ++ +  +    YLK+    +D+G D
Sbjct: 2   GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 61
Query: 323 YAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           +   E+ R+ ++++  +S  K +E     NIL+ F
Sbjct: 62  FPASELARISKLIENKMSEGKKEELQRSLNILTAF 96

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 138 AVPSNVVVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
           A+   V  +  D F  IV     K V+++ +  WCG  K +AP YEK+A  +    DV+ 
Sbjct: 2   AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIF 58
Query: 197 ANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 237
             LD ++  K LA++ G+   PT K   + +  GE  G   D
Sbjct: 59  LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 100

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+++F A WCG  + +AP +  +A  F    + V   +D D+ K +AE++ V   PT 
Sbjct: 38  KLVVIDFTASWCGPSRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTF 94
Query: 220 KFFPKGNKDGEEYGGGRD 237
            F  +G+      G  ++
Sbjct: 95  LFMKEGDVKDRVVGAIKE 112

>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+V+F A W G  K + P +  ++  ++   +V+   +D D  +D+A +  V   PT 
Sbjct: 21  KLVVVDFSATWSGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +FF KG K GE  G  +  E   + INE
Sbjct: 78  QFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Like Protein 2 Length = 130

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           +A  F+E++  K+K +LV  F+APW   C  +     ++A        V    L+A+   
Sbjct: 25  SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVP 81
Query: 206 DLAEKYGVSGFPTLKFFPKGNK 227
           +++EKY +S  PT  FF    K
Sbjct: 82  EVSEKYEISSVPTFLFFKNSQK 103

>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 219
           K V+V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT 
Sbjct: 21  KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDXQDVASEXEVKCMPTF 77
Query: 220 KFFPKGNKDGEEYGGGRD 237
           +FF KG K GE  G  ++
Sbjct: 78  QFFKKGQKVGEFSGANKE 95

>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2 Length = 153

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 147 TADNFDEIVLDKSKDVLV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           +A  F+E++  K+K +LV  F+APW   C  +     ++A        V    L+A+   
Sbjct: 19  SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVP 75
Query: 206 DLAEKYGVSGFPTLKFFPKGNK 227
           +++EKY +S  PT  FF    K
Sbjct: 76  EVSEKYEISSVPTFLFFKNSQK 97

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 155 VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 214
           ++ ++  ++++FYA WCG CK + P   K+  A+    DV     D D+  D+A++  V+
Sbjct: 26  LIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVKCDVDESPDIAKECEVT 82
Query: 215 GFPTLKFFPKGNKDGEEYG 233
             PT        KDG+  G
Sbjct: 83  AMPTFVL----GKDGQLIG 97

>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 144 VVLTADNFDEIVLDKSKD---VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           ++ T + +D+ + + S+D   VL  F A WCG CK +AP Y +++  +     ++   +D
Sbjct: 28  LITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYP---SLMFLVID 84
Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 236
            D+  D +  + +   PT  F   G +  +  G  +
Sbjct: 85  VDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           L+  +F   V      +++ F   WC  CK + PT+E++A+   +E D+  A +DA+  +
Sbjct: 4   LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMAS--QMEGDIRFAYMDAEDAE 61
Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246
               +  +   P+L  F  G    E + G  +  D   +IN
Sbjct: 62  KTMAELNIRTLPSLALFVDGMIR-EVFSGTMNKSDLRYWIN 101

>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of Malaria Parasite Protein Secretion Machinery Length = 128

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 47  FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 106
           F+A WC  C   + E +KL   +   K + + KVD D+++SL  K+ V+  PTI      
Sbjct: 49  FFAKWCQACTMQSTEMDKLQKYY--GKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNK 106
Query: 107 SLEPKKYEGPRSTEALA 123
           ++  +K     S + +A
Sbjct: 107 TMLARKDHFVSSNDLIA 123

>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Related Transmembrane Protein 2 Length = 137

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 152 DEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY 211
           +E+  DK    +VEF+A W   C++ AP Y  ++  +     +    +D  +Y D++ +Y
Sbjct: 19  EELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT-GLNFGKVDVGRYTDVSTRY 77
Query: 212 GVSGFPTLKFFP 223
            VS  P  K  P
Sbjct: 78  KVSTSPLTKQLP 89

>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei Brucei Length = 125

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLV--EFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 194
           A  PS V V + + F  I+   S+D+L    F A WCG CK +    EK+A  F     V
Sbjct: 16  ARYPSVVDVYSVEQFRNIM---SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TV 69
Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 235
             A +DAD   ++  K  V   PT      G   G   G  
Sbjct: 70  KFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGAN 110

>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron Transfer Catalyst Dsbd (Oxidized Form) Length = 134

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADK 203
           T D  ++ +++ K K V+++ YA WC  CK     T+        L D V++ AN+ A+ 
Sbjct: 18  TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 77
Query: 204 YKDLA--EKYGVSGFPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 248
            +D+A  +   V G PT+ FF   +  G+E+   R     D E F + + ++
Sbjct: 78  AQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 126

>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma Length = 125

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADK 203
           T D  ++ +++ K K V+++ YA WC  CK     T+        L D V++ AN+ A+ 
Sbjct: 15  TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 74
Query: 204 YKDLA--EKYGVSGFPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 248
            +D+A  +   V G PT+ FF   +  G+E+   R     D E F + + ++
Sbjct: 75  AQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	6e-95
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-42
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-35
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-76
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-71
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-62
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-55
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-39
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-29
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	2e-73
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	3e-40
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	1e-69
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	7e-39
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	3e-68
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	5e-24
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	2e-65
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	2e-23
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	1e-64
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-60
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	3e-59
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	8e-41
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	5e-10
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	4e-04
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	1e-56
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	6e-45
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	8e-56
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	2e-45
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	5e-54
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	1e-34
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	9e-54
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	1e-53
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	6e-41
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	2e-52
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	3e-50
1mek_A	120	Protein disulfide isomerase; electron transport, r	4e-52
1mek_A	120	Protein disulfide isomerase; electron transport, r	5e-51
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	4e-52
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	6e-21
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	7e-52
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	4e-49
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-51
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-51
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	6e-51
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	5e-48
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-37
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-33
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	4e-50
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	8e-50
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	4e-50
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-49
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	5e-49
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	6e-40
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	1e-48
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	5e-33
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	4e-08
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-47
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-43
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	1e-40
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	4e-28
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	7e-06
2l57_A	126	Uncharacterized protein; structural genomics, unkn	2e-24
2l57_A	126	Uncharacterized protein; structural genomics, unkn	6e-18
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	3e-24
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-21
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	8e-24
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	2e-20
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	8e-24
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	8e-19
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	1e-23
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	1e-18
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	3e-23
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	2e-17
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	6e-23
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	1e-21
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	6e-23
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	7e-20
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	6e-23
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	3e-20
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	8e-23
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	5e-19
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	1e-22
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	1e-17
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	1e-22
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	5e-19
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	2e-22
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	2e-17
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	3e-22
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	7e-18
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	3e-22
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	5e-19
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	7e-22
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	7e-19
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	9e-22
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	3e-18
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	9e-22
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	5e-18
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	1e-21
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	7e-06
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	1e-21
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	7e-18
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	1e-21
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	3e-18
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	1e-21
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	2e-17
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	1e-21
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	1e-18
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	2e-21
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	3e-18
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-21
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	3e-15
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	2e-21
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	3e-17
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-21
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-17
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	2e-21
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	2e-18
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	2e-21
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	1e-16
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	2e-21
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	5e-18
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	2e-21
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	7e-19
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	2e-21
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	9e-17
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	3e-21
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	5e-18
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	3e-21
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	1e-20
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	4e-21
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	2e-17
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	4e-21
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	8e-20
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	4e-21
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	2e-18
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	6e-21
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	2e-18
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	8e-21
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	4e-17
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	1e-20
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	6e-18
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	2e-20
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	3e-18
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	2e-20
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	8e-18
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	2e-20
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	6e-16
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	2e-20
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	1e-16
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	2e-20
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	1e-15
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	3e-20
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	6e-16
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	3e-20
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	9e-16
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	4e-20
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	1e-15
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	4e-20
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	4e-16
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	5e-20
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	2e-17
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	6e-20
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	6e-16
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	8e-20
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	9e-17
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	2e-19
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	3e-17
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	3e-19
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	4e-13
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	3e-19
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	1e-17
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	4e-19
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	5e-15
2kuc_A	130	Putative disulphide-isomerase; structural genomics	4e-19
2kuc_A	130	Putative disulphide-isomerase; structural genomics	1e-14
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	8e-19
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	3e-15
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	2e-18
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	4e-15
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	2e-18
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	1e-16
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	2e-18
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	1e-14
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	1e-17
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-14
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-17
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-14
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	6e-15
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	4e-12
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	5e-14
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	2e-10
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	1e-13
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	2e-10
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	3e-13
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	8e-09
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	1e-12
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	6e-11
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	2e-12
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	6e-08
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	2e-12
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	2e-07
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	4e-12
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	9e-07
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	4e-11
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	7e-08
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	3e-09
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-05
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	5e-09
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	7e-05
2qsi_A	137	Putative hydrogenase expression/formation protein;	6e-09
2qsi_A	137	Putative hydrogenase expression/formation protein;	4e-06
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	3e-08
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	5e-07
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	2e-04
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	6e-07
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	3e-04
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	1e-06
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	7e-04
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-06
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	7e-04
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	3e-06
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	1e-04
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	5e-06
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	6e-06
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	7e-06
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	2e-05
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	2e-05
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	2e-05
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	1e-04
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	2e-05
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	2e-05
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	4e-04
4evm_A	138	Thioredoxin family protein; structural genomics, n	2e-05
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	3e-05
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	3e-04
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	3e-05
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	2e-04
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	3e-05
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	3e-05
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	4e-05
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	8e-04
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	6e-05
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	1e-04
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	1e-04
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-04
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	1e-04
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	4e-04
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	1e-04
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	1e-04
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	2e-04
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	3e-04
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	2e-04
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	2e-04
3raz_A	151	Thioredoxin-related protein; structural genomics,	3e-04
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	3e-04
2lrt_A	152	Uncharacterized protein; structural genomics, thio	3e-04
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	4e-04
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	5e-04

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  281 bits (721), Expect = 6e-95
 Identities = 94/232 (40%), Positives = 131/232 (56%), Gaps = 9/232 (3%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVD 81
           + V+VL + NF+  V      L+EFYAPWCGHCK+ APEYEK+    K     + + K+D
Sbjct: 15  NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKID 74

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPS 141
                 L S++ V GYPTI+   KG  +   YEG R+ E +   V      +      P 
Sbjct: 75  ATSASVLASRFDVSGYPTIKILKKG--QAVDYEGSRTQEEIVAKVREVSQPDWT--PPPE 130

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLD 200
             +VLT +NFDE+V + +  +LVEFYAPWCGHCK LAP YEK A   +     + +A +D
Sbjct: 131 VTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252
           A    DLA+++ VSG+PTLK F KG     +Y G R+    V ++ E+ G +
Sbjct: 190 ATAETDLAKRFDVSGYPTLKIFRKGRP--YDYNGPREKYGIVDYMIEQSGAA 239

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  147 bits (373), Expect = 1e-42
 Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 11/155 (7%)

Query: 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVAN 198
            + V+VL   NFD  V      VL+EFYAPWCGHCK  AP YEK+A      +  + VA 
Sbjct: 14  ENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAK 72

Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQ 258
           +DA     LA ++ VSG+PT+K   KG     +Y G R  E+ V+ + E          +
Sbjct: 73  IDATSASVLASRFDVSGYPTIKILKKGQA--VDYEGSRTQEEIVAKVREVSQPDWTPPPE 130

Query: 259 LTST-------AGIVASLDALVKEFVAASGDEKKA 286
           +T           +  +   LV+ +    G  KK 
Sbjct: 131 VTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKL 165

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  129 bits (325), Expect = 1e-35
 Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 3/113 (2%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVD 81
           +  +VLT++NF++ V      LVEFYAPWCGHCKKLAPEYEK       ++  + + KVD
Sbjct: 130 EVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNV 134
                 L  ++ V GYPT++ F KG   P  Y GPR    + +Y+  + G   
Sbjct: 190 ATAETDLAKRFDVSGYPTLKIFRKG--RPYDYNGPREKYGIVDYMIEQSGAAA 240

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  250 bits (638), Expect = 1e-76
 Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 15/258 (5%)

Query: 10  LGTLTLFFVSALADDVVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYEKLG 66
              +  F        VV LT   F + V Q   D   +V+FY+PW    + L PE++++ 
Sbjct: 530 AEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMA 589

Query: 67  ASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
            +      + +G VDC ++ S C++  VQ YP I+++P+ S +  +Y         A  +
Sbjct: 590 RTLTG--LINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSL 647

Query: 127 NNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAA 186
            + G     +  +P   + LT   F+E VL      +V+FYAPW G  +N AP +E +A 
Sbjct: 648 RSWG-----LGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLAR 702

Query: 187 AFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK---DGEEYGGGRDLEDFVS 243
               +  V    +D   Y    +K G+  +P++K +          EE    RD +   +
Sbjct: 703 MI--KGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAA 760

Query: 244 FINEKCGTSRDGKGQLTS 261
            I  K  T +    +   
Sbjct: 761 LIYGKLETLQSQVKRNKD 778

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  235 bits (599), Expect = 6e-71
 Identities = 67/283 (23%), Positives = 115/283 (40%), Gaps = 23/283 (8%)

Query: 2   ERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPE 61
           E +     L  +  F   ++   V  L   NF          LV+F+APW    + L PE
Sbjct: 419 EIHHGKKILYDILAFAKESVNSHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPE 476

Query: 62  YEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 121
             K          + +G +DC  H+ LC+ Y +Q YPT   F +      +YEG  S E 
Sbjct: 477 LRKASTLLYG--QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQS--SIHEYEGHHSAEQ 532

Query: 122 LAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAP 179
           + E++ +             +VV LT   F+E+V  +  D   +V+FY+PW    + L P
Sbjct: 533 ILEFIED---------LRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMP 583

Query: 180 TYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY----GGG 235
            ++++A        + V ++D  +Y     +  V  +P ++F+P+ +    +Y    G  
Sbjct: 584 EWKRMARTL--TGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWN 641

Query: 236 RDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVA 278
           RD     S+       +       T    ++      V +F A
Sbjct: 642 RDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYA 684

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  212 bits (541), Expect = 1e-62
 Identities = 49/219 (22%), Positives = 81/219 (36%), Gaps = 13/219 (5%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
            +++ L    F+  V       V FY+P   H   LAP + +          + IG V+C
Sbjct: 116 PEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDG--LLRIGAVNC 173

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSN 142
            + + LC   GV  YP++  F  G     KY G RS E+L  +             V S 
Sbjct: 174 GDDRMLCRMKGVNSYPSLFIFRSGM-AAVKYNGDRSKESLVAFAMQH---------VRST 223

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V  L+  NF   + + +    V +   +C   ++   +  ++  +  L+  V V  +D D
Sbjct: 224 VTELSTGNFVNAI-ETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCD 282

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF 241
               L +    +   T  F P    +  E      L   
Sbjct: 283 AQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSL 321

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  191 bits (486), Expect = 5e-55
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 22/233 (9%)

Query: 17  FVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL 76
            +     D  +L+ +  E  +   R      +  +  +     PE +KL    K    + 
Sbjct: 329 EIIHNLPDFELLSANQLEDRLAHHR---WLVFFHFGKNENANDPELKKLKTLLKNEH-IQ 384

Query: 77  IGKVDCDEHKSLCSKYGVQGYPTIQWF-PKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 135
           + + DC     +CS   V   P++  F  +G+ E + + G +    +  +          
Sbjct: 385 VVRFDCSSAPGICSDLYV-FQPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVN---- 439

Query: 136 IAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 195
                S+V  L   NF        +  LV+F+APW    + L P   K +        + 
Sbjct: 440 -----SHVTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRALLPELRKASTLL--YGQLK 489

Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248
           V  LD   ++ L   Y +  +PT   F + +    EY G    E  + FI + 
Sbjct: 490 VGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSI--HEYEGHHSAEQILEFIEDL 540

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  148 bits (374), Expect = 1e-39
 Identities = 45/237 (18%), Positives = 84/237 (35%), Gaps = 12/237 (5%)

Query: 16  FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSV 75
           F +  +   V  L+  NF   +     A V +   +C   +       +L  S      V
Sbjct: 215 FAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLV 274

Query: 76  LIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 135
            +G VDCD   SLC         T  +FP G+    + +             +     ++
Sbjct: 275 NVGWVDCDAQDSLCKSLDTTASTTA-YFPPGATLNDREKSSVLFLNSL----DAKEIYME 329

Query: 136 IAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 195
           I     +  +L+A+  ++ +       LV F+  +  +     P  +K+       + + 
Sbjct: 330 IIHNLPDFELLSANQLEDRL--AHHRWLVFFH--FGKNENANDPELKKLKTLLK-NEHIQ 384

Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFINEKCGT 251
           V   D      +     V   P+L  F  +G K+ E + G + L D ++F  E   +
Sbjct: 385 VVRFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNS 440

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  118 bits (297), Expect = 2e-29
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 5/159 (3%)

Query: 95  QGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDE 153
           + Y  ++        +    +G    +       +    +  I      ++ L    FD 
Sbjct: 69  RAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDA 128

Query: 154 IVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 213
            V +  +   V FY+P   H  +LAPT+ +   A  ++  + +  ++    + L    GV
Sbjct: 129 AV-NSGELWFVNFYSPGSSHSHDLAPTWRE--FAKEVDGLLRIGAVNCGDDRMLCRMKGV 185

Query: 214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252
           + +P+L  F  G     +Y G R  E  V+F  +   ++
Sbjct: 186 NSYPSLFIFRSG-MAAVKYNGDRSKESLVAFAMQHVRST 223

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  227 bits (580), Expect = 2e-73
 Identities = 42/241 (17%), Positives = 86/241 (35%), Gaps = 17/241 (7%)

Query: 23  DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKV 80
           D + +L  D     V G      VEF+A WCGHC   AP +  L    K  +  + +  +
Sbjct: 12  DPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAAL 71

Query: 81  DCDE--HKSLCSKYGVQGYPTIQWFPKGSLEPK---KYEGPRSTEALAEYVNN--EGGTN 133
           DC E  + ++C  + + G+PT+++F   +               + L E + +  E   +
Sbjct: 72  DCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHD 131

Query: 134 VKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD 193
               A P        +       +  + + + F        + +A          +    
Sbjct: 132 TWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVAL-------DLSQHKG 184

Query: 194 VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 253
           V V  +  +   ++  K+GV+ FP+     +                + +++    G +R
Sbjct: 185 VAVRRVL-NTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTR 243

Query: 254 D 254
           +
Sbjct: 244 E 244

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  141 bits (356), Expect = 3e-40
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 131 GTNVKIAAVP-SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF- 188
           G+++     P   + +L AD     VL       VEF+A WCGHC   APT+  +A    
Sbjct: 1   GSHMSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVK 60

Query: 189 TLEDDVVVANLDADKY--KDLAEKYGVSGFPTLKFFPKGNKDGE---EYGGGRDLEDFVS 243
                + +A LD  +     +   + + GFPT++FF     +G        G D++    
Sbjct: 61  AWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRE 120

Query: 244 FINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVF 288
            + +   +  D               +  +  F A + +E  A+ 
Sbjct: 121 RLIDALESHHDTWPPACPPLEPAXLEE--IDGFFARNNEEYLALI 163

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  217 bits (553), Expect = 1e-69
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 21/227 (9%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
              + L    F +++  KSK VLV+F   +    K     ++++A      DD++VA + 
Sbjct: 5   KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVG 61

Query: 201 ADKY-----KDLAEKYGV--SGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCGTS 252
              Y      +L+EKY +    +P    F  G+ +    Y G   +     ++  +    
Sbjct: 62  ISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ---- 117

Query: 253 RDGKGQLTSTAGIVASLDALVKEFVAASG-DEKKAVFSKIERGVEVLEGSTARHGKIYLK 311
               G      G +   DAL  EF+ ASG + ++A+  + +  +  ++ +  +  + YLK
Sbjct: 118 ----GVYLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLK 173

Query: 312 VAKNYMDKGSDYAKKEIDRLQRMLDKS-ISAAKADEFVLKKNILSTF 357
           +    +D+G D+   E+ R+ R+++K+ +S  K +E     NIL+ F
Sbjct: 174 IMGKILDQGEDFPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 220

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  137 bits (347), Expect = 7e-39
 Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 30/233 (12%)

Query: 22  ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD 81
               + L    F K + + +  LV+F   +    K+   E+++L  +   +  +L+ +V 
Sbjct: 4   TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVG 61

Query: 82  CD-----EHKSLCSKYGVQ--GYPTIQWFPKGSLE-PKKYEGPRSTEALAEYVNNEGGTN 133
                   +  L  KY +    YP    F  G  E P  Y G     A+  ++  +G   
Sbjct: 62  ISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVYL 121

Query: 134 VKIAAVPSNVVVLTADNFDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE 191
                +P    +         V  +        +  +      K  A  Y K+      +
Sbjct: 122 GMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQ 181

Query: 192 DDVVVAN-------------LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
            +   A+             +   K ++L +   +     L  F K   + EE
Sbjct: 182 GEDFPASEMTRIARLIEKNKMSDGKKEELQKSLNI-----LTAFQKKGAEKEE 229

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  217 bits (554), Expect = 3e-68
 Identities = 59/264 (22%), Positives = 103/264 (39%), Gaps = 17/264 (6%)

Query: 2   ERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAP 60
             ++  +    L  F        V+  TE    K  G +    ++ F             
Sbjct: 96  NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLS 155

Query: 61  EYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT----IQWFPKGSLEPKKYEGP 116
            ++    SFK     +    D  +++ +   +G++        +    +   + K     
Sbjct: 156 NFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEE 215

Query: 117 RSTEALAEYVNN---------EGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFY 167
            + E + E+ +               +        V VL   NF+++  D+ K+V VEFY
Sbjct: 216 LTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFY 275

Query: 168 APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 227
           APWCGHCK LAP ++K+   +   +++V+A +D+    +  E   V  FPTLKFFP    
Sbjct: 276 APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST--ANEVEAVKVHSFPTLKFFPASAD 333

Query: 228 DG-EEYGGGRDLEDFVSFINEKCG 250
               +Y G R L+ F  F+     
Sbjct: 334 RTVIDYNGERTLDGFKKFLESGGQ 357

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  100 bits (249), Expect = 5e-24
 Identities = 34/263 (12%), Positives = 76/263 (28%), Gaps = 25/263 (9%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
             +      E  V     A++ F+          A ++ +   +       +        
Sbjct: 20  TTLPDGAAAESLVESSEVAVIGFFKDVES---DSAKQFLQAAEAIDDIPFGIT------S 70

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVV 144
           +  + SKY +     +  F K       +EG  + E L +++ +          +P  V+
Sbjct: 71  NSDVFSKYQLDK-DGVVLFKKFDEGRNNFEGEVTKENLLDFIKHN--------QLPL-VI 120

Query: 145 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 204
             T     +I   + K  ++ F              ++  A +F  +   +  + D    
Sbjct: 121 EFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDN 180

Query: 205 KDLAEKYGVSG--FPTLKFFPKGN--KDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 260
           + + E +G+     P ++           +        E    F +         K  L 
Sbjct: 181 QRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRF--LEGKIKPHLM 238

Query: 261 STAGIVASLDALVKEFVAASGDE 283
           S           VK  V  + ++
Sbjct: 239 SQELPEDWDKQPVKVLVGKNFED 261

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score =  206 bits (526), Expect = 2e-65
 Identities = 41/232 (17%), Positives = 90/232 (38%), Gaps = 21/232 (9%)

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDDVV 195
           +   +  V L   +F++ V ++    +V+F              +   + +A     D++
Sbjct: 12  SVTCTGCVDLDELSFEKTV-ERFPYSVVKFDIASP--YGEKHEAFTAFSKSAHKATKDLL 68

Query: 196 VANLDADKY-----KDLAEKYGV--SGFPTLKFFPKGNKDGEE--YGGGRDLEDFVSFIN 246
           +A +    Y     K L ++Y V    FP++  F     +  +        L++  +F++
Sbjct: 69  IATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVS 128

Query: 247 EKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTAR-H 305
                            G +   + ++K +      E+  +  K++   E L     + +
Sbjct: 129 ANTPL-------YIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQN 181

Query: 306 GKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
            + YL   +   + G D+ ++E  RL R+    ++ AK +E + K NIL  F
Sbjct: 182 ARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVF 233

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 96.7 bits (240), Expect = 2e-23
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 16  FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLG-ASFKKAKS 74
              S      V L E +FEK V +   ++V+F         +    +     ++ K  K 
Sbjct: 9   HHGSVTCTGCVDLDELSFEKTVERFPYSVVKFDIASP--YGEKHEAFTAFSKSAHKATKD 66

Query: 75  VLIGKVDCDEH-----KSLCSKYGVQ--GYPTIQWFPKGSLEPK--KYEGPRSTEALAEY 125
           +LI  V   ++     K+L  +Y V    +P+I  F   + E          + + L  +
Sbjct: 67  LLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAF 126

Query: 126 VNNEGGT 132
           V+     
Sbjct: 127 VSANTPL 133

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  206 bits (525), Expect = 1e-64
 Identities = 65/288 (22%), Positives = 108/288 (37%), Gaps = 50/288 (17%)

Query: 23  DDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD 81
             +  LT  +F+K +   +  +LVEFYAPWCGHCKKL+  + K          V     D
Sbjct: 17  PHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCD 76

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGSLE----------------PKKYEGPRSTEALAEY 125
            +++K+LC+KY V G+PT+  F    ++                 + Y G R+   + ++
Sbjct: 77  LNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDF 136

Query: 126 VNNEGGTNVK-IAAVPSNVVVLTADNFDEIVLDKSKDVL--------------VEFYAPW 170
             +   + VK    + +   +L       +VL   +D +               +FY+  
Sbjct: 137 SLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSIS 196

Query: 171 CGHCKNLA---PTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 227
               K L    PTYEK    F     V+     +DK               L  F     
Sbjct: 197 NKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-------------SKLVVFDADKD 243

Query: 228 DGEEY-GGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVK 274
              EY G   +  D   F+ +    + + +G  +  +  +A L    K
Sbjct: 244 KFWEYEGNSINKNDISKFLRDTFSITPN-EGPFSRRSEYIAYLKTGKK 290

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  202 bits (513), Expect = 2e-60
 Identities = 60/357 (16%), Positives = 115/357 (32%), Gaps = 30/357 (8%)

Query: 22  ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGK 79
           +D + +L  D+    V G      VEF+A WCGH    AP +++L    K  +  + +  
Sbjct: 11  SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAV 70

Query: 80  VDCDE--HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS-------TEALAEYVNNEG 130
           +DC E  + ++C ++ + G+PT+++F   +        P +          L + + +  
Sbjct: 71  LDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130

Query: 131 GTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL 190
            T            +   D F          ++ E    + G    L  +          
Sbjct: 131 DTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQY-------- 182

Query: 191 EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 250
               V      +   DL  K+GV+ FP+     +                + S++    G
Sbjct: 183 --HAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPG 240

Query: 251 TSRDGKGQLTSTAGIVASLDALV------KEFVAASGDEKKAVFSKIERGVEVLEGSTAR 304
            +RD      +          +       K ++A        +         VLEG    
Sbjct: 241 LTRDAPPTTATPVTADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKFSVLEGQRLV 300

Query: 305 HGKIYLKVAKNYM---DKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT 358
             K ++ V   Y        ++     D LQ+   K I  +     +  +   +  T
Sbjct: 301 ALKKFVAVLAKYFPGQPLVQNFLHSINDWLQKQQKKRIPYSFFKAALDSRKEDAVLT 357

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  195 bits (496), Expect = 3e-59
 Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 24/234 (10%)

Query: 21  LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA----KSVL 76
           L  ++  L  +N ++ +     ALV FYA WC   + L P +E+     K+       V+
Sbjct: 3   LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVV 62

Query: 77  IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKI 136
             +VDCD+H  +  +Y +  YPT++ F  G +  ++Y G RS +ALA+Y+  +    ++ 
Sbjct: 63  FARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQE 122

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
               + +            LD+SK  ++ ++        +    +E+VA     +   + 
Sbjct: 123 IRDLAEIT----------TLDRSKRNIIGYFE---QKDSDNYRVFERVANILHDDCAFLS 169

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFINEKC 249
           A        D+++    SG   +   P  +     Y G   + +   ++I +KC
Sbjct: 170 AF------GDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKC 217

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  146 bits (370), Expect = 8e-41
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 6/159 (3%)

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF----TLED 192
             + S +  L  +N DE +L+ +   LV FYA WC   + L P +E+ +         E+
Sbjct: 1   GPLGSEITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNEN 59

Query: 193 DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252
            VV A +D D++ D+A++Y +S +PTLK F  G     EY G R ++    +I ++    
Sbjct: 60  QVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDP 119

Query: 253 RDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKI 291
                 L     +  S   ++  +      +   VF ++
Sbjct: 120 IQEIRDLAEITTLDRSKRNII-GYFEQKDSDNYRVFERV 157

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 59.2 bits (143), Expect = 5e-10
 Identities = 27/279 (9%), Positives = 78/279 (27%), Gaps = 28/279 (10%)

Query: 16  FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSV 75
           +     +D +  + +      + + +  ++ ++             +E++        + 
Sbjct: 111 YIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFE---QKDSDNYRVFERVANILHDDCAF 167

Query: 76  LIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG-PRSTEALAEYVNNEGGTNV 134
           L    D  +           G   I   P  S     Y G   + +    ++ ++     
Sbjct: 168 LSAFGDVSK------PERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDK----- 216

Query: 135 KIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 194
               VP  V  +T +N +E+  +    +++          +       +   +      +
Sbjct: 217 ---CVPL-VREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEK--GTI 270

Query: 195 VVANLDADKYKDLAEKYGVS--GFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFINEKCGT 251
              + D DK++        +    P +     +      ++           F+ +    
Sbjct: 271 NFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFD---- 326

Query: 252 SRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSK 290
              GK       G   +  A  ++    +    ++ F K
Sbjct: 327 LHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQK 365

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 18/148 (12%), Positives = 43/148 (29%), Gaps = 8/148 (5%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPW-CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           V  +T +N E+   +    L+ F+        +    E  +   S K   ++     DCD
Sbjct: 221 VREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKG--TINFLHADCD 278

Query: 84  EHKSLCSKYGV--QGYPTIQ-WFPKGSLEPKKYEGPRSTEALAEYVNN--EGGTNVKIAA 138
           + +             P I     +       ++       L ++V +   G  + +   
Sbjct: 279 KFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHH 338

Query: 139 VPSNVVVLTADNFDEIVLDKSKDVLVEF 166
            P        +   ++     +    + 
Sbjct: 339 GPDPTDTAPGEQAQDVASSPPESSFQKL 366

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  180 bits (458), Expect = 1e-56
 Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
             V V+    FD IV+D  KDVL+EFYAPWCGHCK L P Y  +   +  + D+V+A +D
Sbjct: 7   GPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMD 66

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCGTSRDGKGQ 258
           A       ++Y V GFPT+ F P G+K    +  GG RDLE    FI+E        K +
Sbjct: 67  ATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKEE 126

Query: 259 LT 260
           L+
Sbjct: 127 LS 128

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  149 bits (379), Expect = 6e-45
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +  V V+    F+  V    +  L+EFYAPWCGHCK+L P Y  LG  +K  K ++I K+
Sbjct: 6   SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKM 65

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYE-GPRSTEALAEYVNNEGGTNVKI 136
           D   +     +Y V+G+PTI + P G    P K+E G R  E L+++++       + 
Sbjct: 66  DATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRT 123

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  177 bits (451), Expect = 8e-56
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 4/113 (3%)

Query: 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVV 196
           PS VV LT + FD IV+D  KDV V +Y PW  H       ++ ++ + + + +    V 
Sbjct: 14  PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVA 73

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD-GEEYGGGRDLEDFVSFINEK 248
           A +D +KY D+ E+  VSGFPT++++ + +K    EY G R L    SF+ + 
Sbjct: 74  ARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  150 bits (382), Expect = 2e-45
 Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 24  DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAK---SVLIGK 79
            VV LT++ F+  V   ++   V +Y PW  H       ++ L  S  + +   + +  +
Sbjct: 16  RVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAAR 75

Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVN 127
           +D +++  +  +  V G+PT++++ +    EP +Y G R    +  +V 
Sbjct: 76  IDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVF 124

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  180 bits (458), Expect = 5e-54
 Identities = 35/233 (15%), Positives = 76/233 (32%), Gaps = 25/233 (10%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA------KSVL 76
           D VV LTE NF++ + +    L  +Y       K    +++      +        K + 
Sbjct: 11  DRVVSLTEKNFKQVLKKYD-VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIG 69

Query: 77  IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKI 136
              VD  +   L  K G     ++           +++G  + + L E++ +     V+ 
Sbjct: 70  FVMVDAKKEAKLAKKLGFDEEGSLYVLKGD--RTIEFDGEFAADVLVEFLLDLIEDPVE- 126

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
                  ++ +          + +  L+ F+             +E+ A  F  +  +  
Sbjct: 127 -------IINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAEHF--QPYIKF 174

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 249
               A   K +A+K  +       + P  ++           E+ V F+ E  
Sbjct: 175 F---ATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQ 224

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  129 bits (325), Expect = 1e-34
 Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 11/158 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYE------KVAAAFTLEDDV 194
             VV LT  NF +++  K  DVL  +Y       K     ++      ++ A      D+
Sbjct: 11  DRVVSLTEKNFKQVL--KKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDI 68

Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT-SR 253
               +DA K   LA+K G     +L           E+ G    +  V F+ +       
Sbjct: 69  GFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRT--IEFDGEFAADVLVEFLLDLIEDPVE 126

Query: 254 DGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKI 291
               +L   A         +  F  +   E    F + 
Sbjct: 127 IINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEA 164

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  183 bits (466), Expect = 9e-54
 Identities = 64/285 (22%), Positives = 101/285 (35%), Gaps = 31/285 (10%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
              +    F + V      L   +       ++  P + +L    +    +    +D  +
Sbjct: 223 FGEIDGSVFAQYVESGL-PLGYLFYNDEEELEEYKPLFTELAKKNRG--LMNFVSIDARK 279

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK--------- 135
                    ++    +      + E  KY  P+ +E   + ++++     K         
Sbjct: 280 FGRHAGNLNMKEQFPLFAIHDMT-EDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDF 338

Query: 136 --------------IAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTY 181
                              S+V  L   N DEIV D  KDVLV +YAPWCGHCK LAPTY
Sbjct: 339 LKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTY 398

Query: 182 EKVAAAF-TLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD-GEEYGGGRDLE 239
           +++A  +     DV++A LD    ++      + G+PT+  +P G K     Y G R L+
Sbjct: 399 QELADTYANATSDVLIAKLDHT--ENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLD 456

Query: 240 DFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEK 284
               FI E      DGK          A       E         
Sbjct: 457 SLFDFIKENGHFDVDGKALYEEAQEKAAEEADADAELADEEDAIH 501

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  183 bits (464), Expect = 1e-53
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 5/228 (2%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
             VV L  D+F + +      L EF+APWCGHCK +APEY K   +  + K++ + ++DC
Sbjct: 14  SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDC 72

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSL-EPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPS 141
            E++ LC ++ + G+P+++ F    +     YEGPR+ EA+ +++  +    V +  V  
Sbjct: 73  TENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAV--VAD 130

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
               L  + F   V+ +S  +  +F A +          Y+ V+A    +D  +   L +
Sbjct: 131 LPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPS 190

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKD-GEEYGGGRDLEDFVSFINEK 248
              + +      +       F K  +     Y G  D   F  ++   
Sbjct: 191 AMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESG 238

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  149 bits (376), Expect = 6e-41
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 6/198 (3%)

Query: 136 IAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 195
           +A   S VV L  D+F+E +      VL EF+APWCGHCKN+AP Y K A     E ++ 
Sbjct: 9   VAPEDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV-EKNIT 66

Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCGTSRD 254
           +A +D  + +DL  ++ + GFP+LK F   + +   +Y G R  E  V F+ ++   +  
Sbjct: 67  LAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVA 126

Query: 255 GKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEG---STARHGKIYLK 311
               L +       +  ++ +      D     +S   +     +      A        
Sbjct: 127 VVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSI 186

Query: 312 VAKNYMDKGSDYAKKEID 329
              + MD+   Y  K+ D
Sbjct: 187 YLPSAMDEPVVYNGKKAD 204

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  169 bits (429), Expect = 2e-52
 Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 127 NNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAA 186
           +   G    + +   +V+ LT  NF+  V+      LVEFYAPWCGHC+ L P ++K A 
Sbjct: 3   SGSSGAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAAT 62

Query: 187 AFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246
           A  L+D V V  ++ADK++ L  +YGV GFPT+K F       E+Y GGR  E  V    
Sbjct: 63  A--LKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAAL 120

Query: 247 EK 248
             
Sbjct: 121 SA 122

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  163 bits (414), Expect = 3e-50
 Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +DDV+ LT  NF +EV Q D   LVEFYAPWCGHC++L PE++K   + K    V +G V
Sbjct: 16  SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--VVKVGAV 73

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNV 134
           + D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+ +   +   +  
Sbjct: 74  NADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGP 127

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  167 bits (426), Expect = 4e-52
 Identities = 51/119 (42%), Positives = 73/119 (61%), Gaps = 3/119 (2%)

Query: 136 IAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DV 194
                 +V+VL   NF E  L   K +LVEFYAPWCGHCK LAP Y K A     E  ++
Sbjct: 2   APEEEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60

Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCGTS 252
            +A +DA +  DLA++YGV G+PT+KFF  G+    +EY  GR+ +D V+++ ++ G +
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  165 bits (419), Expect = 5e-51
 Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 2/112 (1%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVD 81
           D V+VL + NF + +   +  LVEFYAPWCGHCK LAPEY K     K   S + + KVD
Sbjct: 7   DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEGGT 132
             E   L  +YGV+GYPTI++F  G +  PK+Y   R  + +  ++    G 
Sbjct: 67  ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score =  171 bits (435), Expect = 4e-52
 Identities = 45/231 (19%), Positives = 77/231 (33%), Gaps = 18/231 (7%)

Query: 31  DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS---VLIGKVDCDEHKS 87
           +  +KE  +     +   A  C  C+      ++      +A     + +       HK 
Sbjct: 13  ELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE 72

Query: 88  LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLT 147
              KYGV   PTI           +Y G  +       +N        I  V      L+
Sbjct: 73  ETEKYGVDRVPTIVIEGDKD-YGIRYIGLPAGLEFTTLIN-------GIFHVSQRKPQLS 124

Query: 148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 207
               + + +      +  F    CG+C + A      A      D +    +DA + +DL
Sbjct: 125 EKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFAL---ANDYITSKVIDASENQDL 181

Query: 208 AEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQ 258
           AE++ V G P +      NK   E+ G +    F+ +I       +  K Q
Sbjct: 182 AEQFQVVGVPKIVI----NKGVAEFVGAQPENAFLGYIMAVYEKLKREKEQ 228

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 89.3 bits (221), Expect = 6e-21
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 153 EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF---TLEDDVVVANLDADKYKDLAE 209
           +    +   + +   A  C  C+      ++          +D + +       +K+  E
Sbjct: 16  QKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETE 75

Query: 210 KYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASL 269
           KYGV   PT+      +  G  Y G     +F + IN     S+        T  ++  +
Sbjct: 76  KYGVDRVPTIVIEGDKDY-GIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVV 134

Query: 270 DALVKEFVAAS 280
           D  ++ +V  +
Sbjct: 135 DIPIEIWVFVT 145

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  167 bits (425), Expect = 7e-52
 Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD--V 194
           +    +V+ LT D+FD+ VLD     +VEFYAPWCGHCKNL P +   A+    +    V
Sbjct: 3   SGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKV 62

Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252
            +A +DA   + LA +YG+ GFPT+K F KG +   +Y GGR   D VS   +    +
Sbjct: 63  KLAAVDATVNQVLASRYGIRGFPTIKIFQKG-ESPVDYDGGRTRSDIVSRALDLFSDN 119

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  160 bits (407), Expect = 4e-49
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 4/125 (3%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS--V 75
           S  + DV+ LT+D+F+K V       +VEFYAPWCGHCK L PE+    +  K+     V
Sbjct: 3   SGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKV 62

Query: 76  LIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 135
            +  VD   ++ L S+YG++G+PTI+ F KG   P  Y+G R+   +     +    N  
Sbjct: 63  KLAAVDATVNQVLASRYGIRGFPTIKIFQKGE-SPVDYDGGRTRSDIVSRALDLFSDNAP 121

Query: 136 IAAVP 140
              + 
Sbjct: 122 PPELL 126

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  167 bits (424), Expect = 2e-51
 Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVD 81
           + V VL + NF+  V      L+EFYAPWCGHCK+ APEYEK+ ++ K     + + K+D
Sbjct: 17  NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKID 76

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 135
                 L SK+ V GYPTI+   KG  +   Y+G R+ E +   V      +  
Sbjct: 77  ATSASMLASKFDVSGYPTIKILKKG--QAVDYDGSRTQEEIVAKVREVSQPDWT 128

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  166 bits (423), Expect = 2e-51
 Identities = 50/124 (40%), Positives = 66/124 (53%), Gaps = 4/124 (3%)

Query: 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVAN 198
            + V VL   NFD  V D    VL+EFYAPWCGHCK  AP YEK+A+     +  + VA 
Sbjct: 16  ENGVWVLNDGNFDNFVAD-KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAK 74

Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQ 258
           +DA     LA K+ VSG+PT+K   KG     +Y G R  E+ V+ + E          +
Sbjct: 75  IDATSASMLASKFDVSGYPTIKILKKGQA--VDYDGSRTQEEIVAKVREVSQPDWTPPPE 132

Query: 259 LTST 262
           +TS 
Sbjct: 133 VTSG 136

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  175 bits (445), Expect = 6e-51
 Identities = 69/310 (22%), Positives = 110/310 (35%), Gaps = 36/310 (11%)

Query: 24  DVVVLTEDNFEKEVGQDRGA---LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           DV+ LT+DNFE  +     A   LVEF+APWCGH K+LAPEYE      K    V + KV
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK--GIVPLAKV 59

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVP 140
           DC  + + C+KYGV GYPT++ F  G  E   Y+GPR+ + +  ++  +           
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGE-EAGAYDGPRTADGIVSHLKKQ---------AG 109

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
              V L  +   +  +      +V F+        +    + K A+           N++
Sbjct: 110 PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHS---EFLKAASNLRDNYRFAHTNVE 166

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFINEKCGTSRDGKGQL 259
           +   +      G+  F       K       Y            FI E           +
Sbjct: 167 SLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENI---FGICPHM 223

Query: 260 TSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDK 319
           T     +     L+  +     ++     +                    + VAK ++D 
Sbjct: 224 TEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWR--------------NRVMMVAKKFLDA 269

Query: 320 GSDYAKKEID 329
           G         
Sbjct: 270 GHKLNFAVAS 279

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  168 bits (425), Expect = 5e-48
 Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 22/263 (8%)

Query: 13  LTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA 72
           +  F    +      +TEDN +   G+D   L+ +Y        K +  +        K 
Sbjct: 208 IKKFIQENIFGICPHMTEDNKDLIQGKDL--LIAYYDVDYEKNAKGSNYWRNRVMMVAKK 265

Query: 73  -----KSVLIGKVDCDEHKSLCSKYGVQ----GYPTIQWF-PKGSLEPKKYEGPRSTEAL 122
                  +              S +G++      P +     KG     + E  R  +AL
Sbjct: 266 FLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKAL 325

Query: 123 AEYVNNEGGTNVK--------IAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHC 174
             ++ +    N+K          +    V V+ A+NFDEIV +++KDVL+EFYAPWCGHC
Sbjct: 326 ERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHC 385

Query: 175 KNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYG 233
           KNL P Y+++    + + ++V+A +DA    D+   Y V GFPT+ F P   K   ++Y 
Sbjct: 386 KNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYE 444

Query: 234 GGRDLEDFVSFINEKCGTSRDGK 256
           GGR+L DF+S++  +       +
Sbjct: 445 GGRELSDFISYLQREATNPPVIQ 467

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  139 bits (350), Expect = 2e-37
 Identities = 55/153 (35%), Positives = 76/153 (49%), Gaps = 5/153 (3%)

Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
           S+V+ LT DNF+  + D      +LVEF+APWCGH K LAP YE   AA  L+  V +A 
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEA--AATRLKGIVPLAK 58

Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQ 258
           +D     +   KYGVSG+PTLK F  G +    Y G R  +  VS + ++ G +      
Sbjct: 59  VDCTANTNTCNKYGVSGYPTLKIFRDGEEA-GAYDGPRTADGIVSHLKKQAGPASVPLRT 117

Query: 259 LTSTAGIVASLDALVKEFVAASGDEKKAVFSKI 291
                  ++  DA +  F   S  E  + F K 
Sbjct: 118 EEEFKKFISDKDASIVGFFDDSFSEAHSEFLKA 150

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  128 bits (322), Expect = 2e-33
 Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 26  VVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
            V+  +NF++ V   ++  L+EFYAPWCGHCK L P+Y++LG    K  +++I K+D   
Sbjct: 355 KVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA 414

Query: 85  HKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNV 143
           +  + S Y V+G+PTI + P    L PKKYEG R       Y+  E      I       
Sbjct: 415 N-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPVIQEEKPKK 473

Query: 144 VVLTADNF 151
                ++ 
Sbjct: 474 KKKAQEDL 481

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  162 bits (412), Expect = 4e-50
 Identities = 42/110 (38%), Positives = 66/110 (60%), Gaps = 3/110 (2%)

Query: 21  LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGK 79
           L   V+ LTE+NF+  + +     ++FYAPWCGHCK LAP +E+L        + V I +
Sbjct: 3   LGSTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61

Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 129
           VDC   +++CSKY V+GYPT+  F  G  +  ++ G R  ++L  +V ++
Sbjct: 62  VDCTAERNICSKYSVRGYPTLLLFRGGK-KVSEHSGGRDLDSLHRFVLSQ 110

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  161 bits (410), Expect = 8e-50
 Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVV 195
             + S V+ LT +NFD+ +        ++FYAPWCGHCK LAPT+E+++   F     V 
Sbjct: 1   GPLGSTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK 58

Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248
           +A +D    +++  KY V G+PTL  F  G K   E+ GGRDL+    F+  +
Sbjct: 59  IAEVDCTAERNICSKYSVRGYPTLLLFRGG-KKVSEHSGGRDLDSLHRFVLSQ 110

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  162 bits (413), Expect = 4e-50
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 5/117 (4%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG 78
           S  + +V V+T++N+ + +  D   ++EFYAPWC  C+ L PE+E      +  + V I 
Sbjct: 3   SGSSGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGEDLE-VNIA 59

Query: 79  KVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 135
           KVD  E   L  ++ +   PTI     G  E ++Y+GPR+ +    +++++   +++
Sbjct: 60  KVDVTEQPGLSGRFIINALPTIYHCKDG--EFRRYQGPRTKKDFINFISDKEWKSIE 114

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  162 bits (411), Expect = 1e-49
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 6/116 (5%)

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
           +    NV V+T +N+ E++     D ++EFYAPWC  C+NL P +E  A     + +V +
Sbjct: 3   SGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGE-DLEVNI 58

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252
           A +D  +   L+ ++ ++  PT+     G      Y G R  +DF++FI++K   S
Sbjct: 59  AKVDVTEQPGLSGRFIINALPTIYHCKDGEF--RRYQGPRTKKDFINFISDKEWKS 112

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  159 bits (405), Expect = 5e-49
 Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 7/116 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT---LEDDVVVA 197
             V V+ A N++EIVLD +KDVL+EFYAPWCGHCK LAP YE++ A +     +D VV+A
Sbjct: 7   GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 66

Query: 198 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCGTS 252
            +DA           + GFPT+K +P G K     Y G R +ED + FI E     
Sbjct: 67  KVDATAND---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK 119

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  136 bits (344), Expect = 6e-40
 Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 8/117 (6%)

Query: 23  DDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAK---SVLIG 78
             V V+   N+ + V    +  L+EFYAPWCGHCK LAP+YE+LGA + K++    V+I 
Sbjct: 7   GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 66

Query: 79  KVDCDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNEGGTNV 134
           KVD   +        +QG+PTI+ +P G+  +P  Y G R+ E L +++   G    
Sbjct: 67  KVDATAND---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKA 120

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  167 bits (423), Expect = 1e-48
 Identities = 33/234 (14%), Positives = 77/234 (32%), Gaps = 27/234 (11%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCK------KLAPEYEKLGASFKKAKSVL 76
           D V+ +   N++    +     + ++ P                  E   A   + K V 
Sbjct: 13  DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELA-AQVLEDKGVG 71

Query: 77  IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKI 136
            G VD ++  ++  K G+    +I  F +   E  +Y+G  S + L E++ +     V++
Sbjct: 72  FGLVDSEKDAAVAKKLGLTEEDSIYVFKED--EVIEYDGEFSADTLVEFLLDVLEDPVEL 129

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
                   +            + +  L+ ++             +++ A  F     +  
Sbjct: 130 --------IEGERELQAFENIEDEIKLIGYFK---NKDSEHYKAFKEAAEEF--HPYIPF 176

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFINEKC 249
               A     +A+K  +     + F+    ++           E+ V+F+ E  
Sbjct: 177 F---ATFDSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR 226

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  125 bits (314), Expect = 5e-33
 Identities = 26/191 (13%), Positives = 60/191 (31%), Gaps = 30/191 (15%)

Query: 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKN------LAPTYEKVAAAFTLEDD 193
              V+ + A N+   V  K + + + ++ P      +           E  AA    +  
Sbjct: 12  VDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILEL-AAQVLEDKG 69

Query: 194 VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 253
           V    +D++K   +A+K G++   ++  F +      EY G    +  V F+ +      
Sbjct: 70  VGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV--IEYDGEFSADTLVEFLLDVLEDP- 126

Query: 254 DGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVA 313
                              V+        +         + +   +   + H K + + A
Sbjct: 127 -------------------VELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAA 167

Query: 314 KNYMDKGSDYA 324
           + +      +A
Sbjct: 168 EEFHPYIPFFA 178

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 22/204 (10%)

Query: 13  LTLFFVSALADDVVVLT--EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK 70
           L  F +  L D V ++    +    E  +D   L+ ++        +    +++    F 
Sbjct: 115 LVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFK---NKDSEHYKAFKEAAEEFH 171

Query: 71  KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG-PRSTEALAEYVNNE 129
               +            +  K  ++    I ++     EP      P S E +  +V   
Sbjct: 172 P--YIPFFATF---DSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEH 225

Query: 130 GGTNVKIAAVPSNVVVLTADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF 188
                      + +  L  ++  E    D     +V F               + VA   
Sbjct: 226 --------RRST-LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDN 276

Query: 189 TLEDDVVVANLDADKYKDLAEKYG 212
           T   D+ +  +D D +  L   + 
Sbjct: 277 TDNPDLSIIWIDPDDFPLLVPYWE 300

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  155 bits (395), Expect = 2e-47
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199
           P   + LT   F+E VL      +V+FYAPWCG C+N AP +E +A    ++  V    +
Sbjct: 2   PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARM--IKGKVRAGKV 59

Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDG---EEYGGGRDLEDFVSFINEKCGTSRDG 255
           D   Y    +K G+  +P++K +          EE    RD +   + I  K  T +  
Sbjct: 60  DCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQ 118

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  144 bits (365), Expect = 5e-43
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 21  LADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGK 79
           L    + LT   F ++V Q     +V+FYAPWCG C+  APE+E L    K    V  GK
Sbjct: 1   LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGK 58

Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKK---YEGPRSTEALAEYVNNEGGTNVK 135
           VDC  +   C K G++ YP+++ +     +          R  + +A  +  +  T   
Sbjct: 59  VDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQS 117

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score =  147 bits (372), Expect = 1e-40
 Identities = 45/274 (16%), Positives = 82/274 (29%), Gaps = 17/274 (6%)

Query: 22  ADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS----- 74
              VV L+ D+F +          +V FY   CG C++ A  + K     K         
Sbjct: 22  DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQ 81

Query: 75  -VLIGKVDCDEHKSLCSKYGVQGYPTIQWF-PKGSLEPKKYEGPRSTEALAEYVNNEGGT 132
                 V+C     LC KY +   P + +F P+ S    +  G  S E +A   ++    
Sbjct: 82  IATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVD 141

Query: 133 NVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED 192
            ++        +V      D+ + ++  D+  + Y       K    + ++        +
Sbjct: 142 ELE---SEVRRLVNKHMVVDDSLKERCIDMHFKLYTSKEELVKRSVSSTDESGRFVETTE 198

Query: 193 DVVVANLDADKYKDLAEKYGVSGFP-----TLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
                   A       +   V   P      L+ F    KD     G   +   +  I  
Sbjct: 199 LYATDIAGAFFSAMHYDVSLVGTEPRERLTALEDFVLLVKDSLPSIGADGVVSALESITA 258

Query: 248 KCGTSRDGKGQLTSTAGIVASLDALVKEFVAASG 281
           +   +          +GI          +    G
Sbjct: 259 ERPFTVASWQDAVVKSGIPFDGSPRNVRWRTCRG 292

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score =  108 bits (271), Expect = 4e-28
 Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 12/208 (5%)

Query: 44  LVEFYAP-WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 102
           L+ F     C +C +L    ++L +      S  I   D  E K L  +Y +   P    
Sbjct: 26  LIVFVRKDHCQYCDQLKQLVQEL-SELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTI 84

Query: 103 FPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDV 162
              G     +Y G  +    A ++         I  V      L  +    I        
Sbjct: 85  TQDGKDFGVRYFGLPAGHEFAAFLE-------DIVDVSREETNLMDETKQAIRNIDQDVR 137

Query: 163 LVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 220
           ++ F  P C +C        K A       +  ++   ++A +Y + A++Y V   P + 
Sbjct: 138 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIV 197

Query: 221 FFPKGNKDGEEYGGGRDLEDFVSFINEK 248
               G +D  E+ G    + F+  +   
Sbjct: 198 IQVNG-EDRVEFEGAYPEKMFLEKLLSA 224

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 162 VLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 220
            L+ F     C +C  L    ++++   T +    + + D  + K+LA++Y +   P   
Sbjct: 25  KLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATT 83

Query: 221 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDA--LVKEFVA 278
               G   G  Y G     +F +F+ +    SR+    +  T   + ++D    +  FV 
Sbjct: 84  ITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVT 143

Query: 279 AS 280
            +
Sbjct: 144 PT 145

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 95.6 bits (238), Expect = 2e-24
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 136 IAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 195
           +  +            +     +    ++ F    C +C  +      V+     + ++ 
Sbjct: 3   LEGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIY 62

Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 247
            A L+ +K  DLA KY  +  PT  F    +K+G ++    G     +  + +N 
Sbjct: 63  YARLEEEKNIDLAYKYDANIVPTTVFL---DKEGNKFYVHQGLMRKNNIETILNS 114

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 77.9 bits (192), Expect = 6e-18
 Identities = 13/105 (12%), Positives = 39/105 (37%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           +   +      +E  +    ++ F    C +C ++  E   +    +   ++   +++ +
Sbjct: 10  NFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEE 69

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
           ++  L  KY     PT  +  K   +   ++G      +   +N+
Sbjct: 70  KNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNS 114

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 94.7 bits (236), Expect = 3e-24
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           S +  +T +       +   D +V F+   C HCKN+    +K  A       V ++++D
Sbjct: 2   SAIRDITTEAGMA-HFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA---PQVAISSVD 57

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           ++   +L ++ G    PTL F     +DG+
Sbjct: 58  SEARPELMKELGFERVPTLVFI----RDGK 83

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 87.0 bits (216), Expect = 2e-21
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           +  +T +           A+V F+   C HCK +    +K GA   +     I  VD + 
Sbjct: 4   IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVA---ISSVDSEA 60

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
              L  + G +  PT+ +   G +  K + G  +   L     
Sbjct: 61  RPELMKELGFERVPTLVFIRDGKVA-KVFSGIMNPRELQALYA 102

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 94.9 bits (236), Expect = 8e-24
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
           A + +  V                 +LV+F+APWCG C+ +AP ++  AA       V +
Sbjct: 42  AGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATL--AGQVRL 99

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINEKCGTS 252
           A +D   +  +A ++ + G P    F      G E     G R   + V F+  K G  
Sbjct: 100 AKIDTQAHPAVAGRHRIQGIPAFILF----HKGRELARAAGARPASELVGFVRGKLGAR 154

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 85.6 bits (212), Expect = 2e-20
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 19  SALADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI 77
           + L    V   +        + D   LV+F+APWCG C+++AP+++   A+   A  V +
Sbjct: 42  AGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATL--AGQVRL 99

Query: 78  GKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
            K+D   H ++  ++ +QG P    F KG    +   G R    L  +V 
Sbjct: 100 AKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAA-GARPASELVGFVR 148

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 94.4 bits (235), Expect = 8e-24
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           S+++      + + V D  K V+V FY+P C +CK + P +E+ A  +      V   ++
Sbjct: 6   SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEY--GSSAVFGRIN 63

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
                  AEKYGV G PT KFF      G 
Sbjct: 64  IATNPWTAEKYGVQGTPTFKFF----CHGR 89

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 80.9 bits (200), Expect = 8e-19
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
              ++   +  + ++V    +  +V FY+P C +CK + P +E+    +    S + G++
Sbjct: 5   GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEY--GSSAVFGRI 62

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           +   +     KYGVQG PT ++F  G    ++  G      L   V 
Sbjct: 63  NIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQV-GQIYPSILKNAVR 108

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 93.2 bits (232), Expect = 1e-23
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
              T +     + +    VLV+F+A WCG C+ L      +A A     DV    +D DK
Sbjct: 8   FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN---KDVTFIKVDVDK 64

Query: 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 247
             + A+ YGVS  P L F  K   + +      G D+    + I +
Sbjct: 65  NGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEK 110

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 79.8 bits (197), Expect = 1e-18
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 26  VVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
              T +     + +     LV+F+A WCG C++L      +  + K        KVD D+
Sbjct: 8   FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVT---FIKVDVDK 64

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKK 112
           + +    YGV   P + +  K   E K 
Sbjct: 65  NGNAADAYGVSSIPALFFVKKEGNEIKT 92

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 92.4 bits (230), Expect = 3e-23
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           +V V+++ +  + V    K V+++F+A WCG CK + P +EK++      D V    +D 
Sbjct: 16  SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPA-GDKVGFYKVDV 74

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233
           D+   +A++ G+   PT  FF  G K     G
Sbjct: 75  DEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVG 106

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 25  VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           V V++  +  K+V G D+  +++F+A WCG CK + P +EK+  +    K V   KVD D
Sbjct: 17  VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK-VGFYKVDVD 75

Query: 84  EHKSLCSKYGVQGYPTIQWFPKG 106
           E   +  + G++  PT  +F  G
Sbjct: 76  EQSQIAQEVGIRAMPTFVFFKNG 98

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 92.1 bits (229), Expect = 6e-23
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
             VV      F + V   +   LV+F+APWCG C+ ++P  E++A        + V  ++
Sbjct: 33  PWVVEADEKGFAQEVA-GAPLTLVDFFAPWCGPCRLVSPILEELARDH--AGRLKVVKVN 89

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
            D++  LA +YGV   PTL  F    + G  
Sbjct: 90  VDEHPGLAARYGVRSVPTLVLF----RRGAP 116

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 89.0 bits (221), Expect = 1e-21
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
             VV   E  F +EV      LV+F+APWCG C+ ++P  E+L      A  + + KV+ 
Sbjct: 33  PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDH--AGRLKVVKVNV 90

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           DEH  L ++YGV+  PT+  F +G+       G      L E + 
Sbjct: 91  DEHPGLAARYGVRSVPTLVLFRRGAPVATWV-GASPRRVLEERLR 134

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 92.2 bits (229), Expect = 6e-23
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 15/118 (12%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAA-----AFTLEDDVV 195
             ++ +T + F +++     D ++  Y+  C HC    P   + +              +
Sbjct: 16  GRLIYITPEEFRQLL---QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSL 72

Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINEKCG 250
           +   +    +    K GV G PTL F+    K+G       G       V    E  G
Sbjct: 73  IGERELSAARLEMNKAGVEGTPTLVFY----KEGRIVDKLVGATPWSLKVEKAREIYG 126

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 83.7 bits (207), Expect = 7e-20
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKL-----GASFKKAKSVLIG 78
            ++ +T + F + +  D  A++  Y+  C HC +  P+  +                LIG
Sbjct: 17  RLIYITPEEFRQLLQGD--AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIG 74

Query: 79  KVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           + +    +   +K GV+G PT+ ++ +G     K  G        E   
Sbjct: 75  ERELSAARLEMNKAGVEGTPTLVFYKEGR-IVDKLVGATPWSLKVEKAR 122

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 92.5 bits (230), Expect = 6e-23
 Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199
              V+  TA+  D+ +L     ++++F+APWCG C++ AP + + AA       V    +
Sbjct: 37  DGEVINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAER--AGKVRFVKV 93

Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 247
           + +    L+ ++ +   PT+  +    ++G+      G      F ++++E
Sbjct: 94  NTEAEPALSTRFRIRSIPTIMLY----RNGKMIDMLNGAVPKAPFDNWLDE 140

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 85.2 bits (211), Expect = 3e-20
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 21  LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
              +V+  T +  +K +  D   +++F+APWCG C+  AP + +  A    A  V   KV
Sbjct: 36  FDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAER--AGKVRFVKV 93

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           + +   +L +++ ++  PTI  +  G +      G         +++
Sbjct: 94  NTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLN-GAVPKAPFDNWLD 139

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 91.8 bits (228), Expect = 8e-23
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 139 VPSNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 197
           +      + A   D+ +       +L+           +      ++   F  + D  VA
Sbjct: 15  LTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP-QFDWQVA 73

Query: 198 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 247
             D ++ + + +++ V  FP    F     DG+  G   G     + ++ +  
Sbjct: 74  VADLEQSEAIGDRFNVRRFPATLVF----TDGKLRGALSGIHPWAELLTLMRS 122

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 81.4 bits (201), Expect = 5e-19
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL 88
           T D++ K VG D   L+                  +L   F +     +   D ++ +++
Sbjct: 26  TVDDWIKRVG-DGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD-WQVAVADLEQSEAI 83

Query: 89  CSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
             ++ V+ +P    F  G L      G      L   + 
Sbjct: 84  GDRFNVRRFPATLVFTDGKL-RGALSGIHPWAELLTLMR 121

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 90.9 bits (226), Expect = 1e-22
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 133 NVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED 192
            +++ A   +VV + +      ++ +    +  F A WCG CK +    EK+A  F    
Sbjct: 11  GIRMRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---P 67

Query: 193 DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233
            V  A +DAD   ++  K  V   PT      G   G   G
Sbjct: 68  TVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIG 108

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           V V + + F   + +D   +  F A WCG CK +    EK+   F   K     KVD D 
Sbjct: 22  VDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVK---FAKVDADN 78

Query: 85  HKSLCSKYGVQGYPTIQWFPKG 106
           +  + SK  V   PT      G
Sbjct: 79  NSEIVSKCRVLQLPTFIIARSG 100

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 90.9 bits (226), Expect = 1e-22
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 9/109 (8%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
             +     N    V  K+  +++ F+A WC  C   +   +K+   +     + +  +D 
Sbjct: 25  PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYY--GKRIYLLKVDL 82

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 247
           DK + LA K+ V   PT+       K+              D ++ I +
Sbjct: 83  DKNESLARKFSVKSLPTIILL----KNKTMLARKDHFVSSNDLIALIKK 127

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 80.9 bits (200), Expect = 5e-19
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
            +     N    V   +   ++ F+A WC  C   + E +KL   +   K + + KVD D
Sbjct: 26  RLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYY--GKRIYLLKVDLD 83

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           +++SL  K+ V+  PTI      ++  +K +   S+  L   + 
Sbjct: 84  KNESLARKFSVKSLPTIILLKNKTMLARK-DHFVSSNDLIALIK 126

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 89.7 bits (223), Expect = 2e-22
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 131 GTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL 190
           G +    +  +++  LT       ++ ++  ++++FYA WCG CK + P   K+  A+  
Sbjct: 2   GHHHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP- 60

Query: 191 EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
             DV     D D+  D+A++  V+  PT        KDG+ 
Sbjct: 61  --DVRFVKCDVDESPDIAKECEVTAMPTFVLG----KDGQL 95

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 25  VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           +  LT     + +  Q+   +++FYA WCG CK + P   KL  ++   +     K D D
Sbjct: 14  ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVR---FVKCDVD 70

Query: 84  EHKSLCSKYGVQGYPTIQWFPKG 106
           E   +  +  V   PT      G
Sbjct: 71  ESPDIAKECEVTAMPTFVLGKDG 93

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 89.7 bits (223), Expect = 3e-22
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           +   +    +F + V++    V+V+F+A WCG CK L P  EK+ A       VV+A +D
Sbjct: 13  TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQ--HGKVVMAKVD 70

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
            D + DLA +Y VS  PT+       K+G+
Sbjct: 71  IDDHTDLAIEYEVSAVPTVLAM----KNGD 96

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 77.8 bits (192), Expect = 7e-18
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVDC 82
             +    +F+  V   +   +V+F+A WCG CK L P  EK+ A    K     + KVD 
Sbjct: 15  FNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVV---MAKVDI 71

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           D+H  L  +Y V   PT+     G +  K   G +  + L  ++ 
Sbjct: 72  DDHTDLAIEYEVSAVPTVLAMKNGDVVDKFV-GIKDEDQLEAFLK 115

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 89.7 bits (223), Expect = 3e-22
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           ++  L  + F++++ D+ K  LV F    C  C+ + P  E++   +  E+      +D 
Sbjct: 5   SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNY--EESFGFYYVDV 62

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           ++ K L +++ + G P + +F    KDGE
Sbjct: 63  EEEKTLFQRFSLKGVPQILYF----KDGE 87

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 80.4 bits (199), Expect = 5e-19
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           +  L  + FE+ +    +  LV F    C  C+K+ P  E+L  ++   +S     VD +
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNY--EESFGFYYVDVE 63

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           E K+L  ++ ++G P I +F  G  + K   G    + + + + 
Sbjct: 64  EEKTLFQRFSLKGVPQILYFKDGEYKGKMA-GDVEDDEVEQMIA 106

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 89.1 bits (221), Expect = 7e-22
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)

Query: 142 NVVVLTADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
            +        DE +  DK    +VEF+A W   C++ AP Y  ++  +     +    +D
Sbjct: 8   YIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKVD 66

Query: 201 ADKYKDLAEKYGVS------GFPTLKFFPKGNKDGEE 231
             +Y D++ +Y VS        PTL  F    + G+E
Sbjct: 67  VGRYTDVSTRYKVSTSPLTKQLPTLILF----QGGKE 99

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 81.0 bits (200), Expect = 7e-19
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRGA--LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL 76
           S  +  +    +   ++E+ +D+    +VEF+A W   C+  AP Y  L   +     + 
Sbjct: 3   SGSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG-LN 61

Query: 77  IGKVDCDEHKSLCSKYGV------QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 129
            GKVD   +  + ++Y V      +  PT+  F  G    ++            +  +E
Sbjct: 62  FGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRR-PQIDKKGRAVSWTFSE 119

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 88.6 bits (220), Expect = 9e-22
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
            ++ LT D+FD  VL     +LV+F+A WCG  K +AP  +++A  +  +  + VA L+ 
Sbjct: 23  KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVAKLNI 80

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           D+    A KYG+ G PTL  F    K+GE
Sbjct: 81  DQNPGTAPKYGIRGIPTLLLF----KNGE 105

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 79.0 bits (195), Expect = 3e-18
 Identities = 32/107 (29%), Positives = 60/107 (56%), Gaps = 4/107 (3%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +D ++ LT+D+F+ +V + D   LV+F+A WCG  K +AP  +++   +     + + K+
Sbjct: 21  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVAKL 78

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           + D++     KYG++G PT+  F  G +   K  G  S   L E+++
Sbjct: 79  NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATK-VGALSKGQLKEFLD 124

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 87.7 bits (218), Expect = 9e-22
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
            ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ 
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNI 60

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           D+    A KYG+ G PTL  F    K+GE
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLF----KNGE 85

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 77.7 bits (192), Expect = 5e-18
 Identities = 34/108 (31%), Positives = 62/108 (57%), Gaps = 6/108 (5%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGK 79
           +D ++ LT+D+F+ +V + D   LV+F+A WCG CK +AP  +++   ++ K     + K
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLT---VAK 57

Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           ++ D++     KYG++G PT+  F  G +   K  G  S   L E+++
Sbjct: 58  LNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATK-VGALSKGQLKEFLD 104

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 91.4 bits (226), Expect = 1e-21
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 18/218 (8%)

Query: 46  EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPK 105
           +     C    +L   +E+   +    K + +     +      S++ V+  PT+ +   
Sbjct: 36  KSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGG 95

Query: 106 GSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVE 165
                 ++ G  + E +   V         I  +  +   L     + +   K +  +  
Sbjct: 96  EV----RWTGIPAGEEIRALVEV-------IMRLSEDESGLEDATKEALKSLKGRVHIET 144

Query: 166 FYAPWCGHCKNLAPTYEKVA--AAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 223
              P C +C          A  A       ++   ++A +  D+A+KYGV   P++    
Sbjct: 145 IITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI-- 202

Query: 224 KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTS 261
                   + G    EDF+ ++          KG + +
Sbjct: 203 ---NGYLVFVGVPYEEDFLDYVKSAAEGRLTVKGPIRA 237

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 15  LFFVSALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAK 73
           +  +  L++D   L +   E          +     P C +C               K  
Sbjct: 112 VEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQG 171

Query: 74  SVLI--GKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
           + +I    V+  E+  +  KYGV   P+I     G L    + G    E   +YV +
Sbjct: 172 NPVILSEAVEAYENPDIADKYGVMSVPSI--AINGYLV---FVGVPYEEDFLDYVKS 223

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 87.3 bits (217), Expect = 1e-21
 Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 6/89 (6%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           +V+ +T +NF++ VL   K VLV+F+APWCG C+ +AP  E++A  +  E  V V  ++ 
Sbjct: 2   SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNV 59

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           D+  + A +YG+   PTL  F    K+G+
Sbjct: 60  DENPNTAAQYGIRSIPTLLLF----KNGQ 84

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 77.3 bits (191), Expect = 7e-18
 Identities = 38/105 (36%), Positives = 66/105 (62%), Gaps = 6/105 (5%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVDC 82
           V+ +T++NFE+EV + D+  LV+F+APWCG C+ +AP  E+L   ++ K K   + KV+ 
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVK---VVKVNV 59

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           DE+ +  ++YG++  PT+  F  G +  +   G +  EAL E ++
Sbjct: 60  DENPNTAAQYGIRSIPTLLLFKNGQVVDRLV-GAQPKEALKERID 103

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
             V+ +T   F+  VL   + VLV F+A WCG C+ ++P     A  +   D + V  L+
Sbjct: 7   KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY--SDRLKVVKLE 64

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
            D      +KY V G P L+      K  +
Sbjct: 65  IDPNPTTVKKYKVEGVPALRLV----KGEQ 90

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGK 79
           +  V+ +T+  FE EV + ++  LV F+A WCG C+ ++P       ++  + K   + K
Sbjct: 6   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLK---VVK 62

Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           ++ D + +   KY V+G P ++      +     EG  S + L  +++
Sbjct: 63  LEIDPNPTTVKKYKVEGVPALRLVKGEQILDST-EGVISKDKLLSFLD 109

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 87.8 bits (218), Expect = 1e-21
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           S  + +T  +F   VL  +K VLV+F+A WCG CK +AP  E++A       D+ VA LD
Sbjct: 12  SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATER--ATDLTVAKLD 69

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
            D   + A  + V   PTL  F    KDG+
Sbjct: 70  VDTNPETARNFQVVSIPTLILF----KDGQ 95

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
               + +T+ +F  +V   ++  LV+F+A WCG CK +AP  E++      A  + + K+
Sbjct: 11  KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATER--ATDLTVAKL 68

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
           D D +      + V   PT+  F  G    +   G +   AL   +++
Sbjct: 69  DVDTNPETARNFQVVSIPTLILFKDGQPVKRIV-GAKGKAALLRELSD 115

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 87.4 bits (217), Expect = 1e-21
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
               TA  FD   + + K V+V+FYA WCG CK +AP  EK +  +          LD D
Sbjct: 9   TQFKTASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY---PQADFYKLDVD 64

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
           +  D+A+K  VS  PTL  F    K+G+E
Sbjct: 65  ELGDVAQKNEVSAMPTLLLF----KNGKE 89

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
               T   F+  + QD+  +V+FYA WCG CK +AP  EK    + +A      K+D DE
Sbjct: 9   TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDE 65

Query: 85  HKSLCSKYGVQGYPTIQWFPKG 106
              +  K  V   PT+  F  G
Sbjct: 66  LGDVAQKNEVSAMPTLLLFKNG 87

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 87.4 bits (217), Expect = 2e-21
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           +  + +T  NFDE  L +   VLV+F+A WC  C+ +AP  E++A  +  E  ++VA LD
Sbjct: 1   AKPIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEY--EGKLLVAKLD 57

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
            D+    A +Y V   PT+  F    KDG+
Sbjct: 58  VDENPKTAMRYRVMSIPTVILF----KDGQ 83

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
             + +T+ NF++ +GQ    LV+F+A WC  C+ +AP  E++   +     +L+ K+D D
Sbjct: 2   KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEY--EGKLLVAKLDVD 59

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           E+     +Y V   PT+  F  G        G +        + 
Sbjct: 60  ENPKTAMRYRVMSIPTVILFKDGQPVEVLV-GAQPKRNYQAKIE 102

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 87.9 bits (218), Expect = 2e-21
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
           S  + L        V   +++  ++++F A WC  C  +   ++           V + +
Sbjct: 20  SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN----YYYVTLVD 75

Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINEKCGTS 252
           +D D +  L +++ +   PT +F+   N +        G +  D      + C   
Sbjct: 76  IDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCLEK 131

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 25  VVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD 81
            + L       +V    Q+   +++F A WC  C K+   ++     +     V +  +D
Sbjct: 22  YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY----VTLVDID 77

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKG 106
            D H  L  ++ ++  PT +++   
Sbjct: 78  VDIHPKLNDQHNIKALPTFEFYFNL 102

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 87.5 bits (217), Expect = 2e-21
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)

Query: 137 AAVPSNVVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 195
            A+   V  +  D F  IV     K V+++ +  WCG CK +AP YEK+A  +    DV+
Sbjct: 14  EAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY---LDVI 70

Query: 196 VANLDADKY-KDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233
              LD ++  K LA++ G+   PT K   + +  GE  G
Sbjct: 71  FLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 109

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 75.9 bits (187), Expect = 3e-17
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 12  TLTLFFVSALADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASF 69
            L    + A+   V  + +D F   V    D+  +++ +  WCG CK +AP+YEKL   +
Sbjct: 7   ALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY 66

Query: 70  KKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKG 106
                V+  K+DC+ E+K+L  + G++  PT +   + 
Sbjct: 67  LD---VIFLKLDCNQENKTLAKELGIRVVPTFKILKEN 101

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 87.0 bits (216), Expect = 2e-21
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 138 AVPSNVVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
           A+   V  +  D F  IV     K V+++ +  WCG  K +AP YEK+A  +    DV+ 
Sbjct: 2   AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEY---LDVIF 58

Query: 197 ANLDADKY-KDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233
             LD ++  K LA++ G+   PT K   + +  GE  G
Sbjct: 59  LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 96

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 20  ALADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI 77
           A+   V  + +D F   V    D+  +++ +  WCG  K +AP+YEKL   +     V+ 
Sbjct: 2   AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD---VIF 58

Query: 78  GKVDCD-EHKSLCSKYGVQGYPTIQWFPKG 106
            K+DC+ E+K+L  + G++  PT +   + 
Sbjct: 59  LKLDCNQENKTLAKELGIRVVPTFKILKEN 88

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 87.0 bits (216), Expect = 2e-21
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 6/90 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
             +  +T D+F++ VL   K VLV+F+A WCG C+ +AP+ E +AA +   D + +  L+
Sbjct: 5   GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY--GDKIEIVKLN 62

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
            D+    A KYGV   PTL  +    + GE
Sbjct: 63  IDENPGTAAKYGVMSIPTLNVY----QGGE 88

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 4/110 (3%)

Query: 19  SALADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI 77
           S +A  +  +T+D+FE++V + D+  LV+F+A WCG C+++AP  E + A +     + I
Sbjct: 1   SHMAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY--GDKIEI 58

Query: 78  GKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
            K++ DE+    +KYGV   PT+  +  G +      G +   A+   + 
Sbjct: 59  VKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIV-GAKPKAAIVRDLE 107

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 87.0 bits (216), Expect = 2e-21
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 7/105 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
           S ++ L  D   E +L++ K+  V+V+F+A WCG CK +AP +++++  +    D +   
Sbjct: 13  SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVK 68

Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD-LEDFV 242
           +D DK ++ A KY +S  PT      G K G+  G     +ED +
Sbjct: 69  VDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMI 113

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 25  VVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
           + +  + + E  + Q  ++  +V+F+A WCG CK +AP +++L   +      +  KVD 
Sbjct: 16  IELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD----AIFVKVDV 71

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKG 106
           D+ +    KY +   PT      G
Sbjct: 72  DKLEETARKYNISAMPTFIAIKNG 95

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 86.5 bits (215), Expect = 2e-21
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 6/88 (6%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V  +   ++ E VL+    V+V+F+APWCG CK +AP  +++A  +     + V  L+ D
Sbjct: 2   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEY--SGKIAVYKLNTD 59

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           +   +A +Y +   PT+ FF    K+GE
Sbjct: 60  EAPGIATQYNIRSIPTVLFF----KNGE 83

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 77.7 bits (192), Expect = 5e-18
 Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 24  DVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVD 81
           +V  + + ++++ V + +   +V+F+APWCG CK +AP  ++L   +  K     + K++
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIA---VYKLN 57

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
            DE   + ++Y ++  PT+ +F  G  +     G      L + + 
Sbjct: 58  TDEAPGIATQYNIRSIPTVLFFKNGERKESII-GAVPKSTLTDSIE 102

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 86.6 bits (215), Expect = 2e-21
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
             +VLT +NFDE V+  +K VLV+ +A WC  C    P Y+KVA  +  +   V   L+ 
Sbjct: 5   VTLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKY--KGKAVFGRLNV 61

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           D+ + +A+KY V   PT   F     +G+
Sbjct: 62  DENQKIADKYSVLNIPTTLIF----VNGQ 86

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 80.1 bits (198), Expect = 7e-19
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 22  ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKV 80
            D  +VLTE+NF++ +  ++  LV+ +A WC  C    P Y+K+   +K KA     G++
Sbjct: 3   EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAV---FGRL 59

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           + DE++ +  KY V   PT   F  G L      G    + L   VN
Sbjct: 60  NVDENQKIADKYSVLNIPTTLIFVNGQLVDSLV-GAVDEDTLESTVN 105

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 86.6 bits (215), Expect = 2e-21
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 143 VVVLTADNFDEIVLDKS-KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
             V    + D  +   S K V+++F+A WCG CK ++P   +++  F   D+VVV  +D 
Sbjct: 3   YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVDV 60

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 233
           D+ +D+A +Y +S  PT  F   G K  E  G
Sbjct: 61  DECEDIAMEYNISSMPTFVFLKNGVKVEEFAG 92

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 74.2 bits (183), Expect = 9e-17
 Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 25  VVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
             V  + + + ++ +   +  +++F+A WCG CK ++P+  +L  S + A +V++ KVD 
Sbjct: 3   YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVEL--STQFADNVVVLKVDV 60

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKG 106
           DE + +  +Y +   PT  +   G
Sbjct: 61  DECEDIAMEYNISSMPTFVFLKNG 84

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 86.6 bits (215), Expect = 3e-21
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
           + + ++  +FD+ VL  S  VLV+F+A WCG CK + P   ++   F     V VA ++ 
Sbjct: 3   HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEF--AGKVTVAKVNI 60

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           D   +    Y V   PTL       +DG+
Sbjct: 61  DDNPETPNAYQVRSIPTLMLV----RDGK 85

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 77.7 bits (192), Expect = 5e-18
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           ++  + +++ +F+++V +     LV+F+A WCG CK + P   ++G  F  A  V + KV
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEF--AGKVTVAKV 58

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
           + D++    + Y V+  PT+     G +  KK  G      L  +V +
Sbjct: 59  NIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKV-GALPKSQLKAWVES 105

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 86.2 bits (214), Expect = 3e-21
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V+ L + NFD   L   +  +V+F+A WC  C  LAP  E++A  +     V    L++D
Sbjct: 1   VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDY---PQVGFGKLNSD 56

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           +  D+A +YGV   PT+ FF    KDGE
Sbjct: 57  ENPDIAARYGVMSLPTVIFF----KDGE 80

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 84.7 bits (210), Expect = 1e-20
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           V+ L   NF+  +     A+V+F+A WC  C  LAP  E+L   + +      GK++ DE
Sbjct: 1   VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVG---FGKLNSDE 57

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           +  + ++YGV   PT+ +F  G    +   G    E +   + 
Sbjct: 58  NPDIAARYGVMSLPTVIFFKDGEPVDEII-GAVPREEIEIRIK 99

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 86.2 bits (214), Expect = 4e-21
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 6/88 (6%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
              +  D F  +VL+ S  VLV+F+APWCG C+ +AP  +++A  +  +D +    L+ D
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTD 60

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           +  ++A +YG+   PT+  F    K G+
Sbjct: 61  ESPNVASEYGIRSIPTIMVF----KGGK 84

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVDC 82
              + +D F+  V +     LV+F+APWCG C+ +AP  +++   +K K K     K++ 
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLK---CVKLNT 59

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           DE  ++ S+YG++  PTI  F  G        G      + + V 
Sbjct: 60  DESPNVASEYGIRSIPTIMVFKGGKKCETII-GAVPKATIVQTVE 103

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 86.2 bits (214), Expect = 4e-21
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 206
           T +      +++ + VL+      CG C  +      V   +   + V    +     ++
Sbjct: 7   TIEELAT-YIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY---NYVEKIEILLQDMQE 62

Query: 207 LAEKYGVSGFPTLKFFPKGNKDGEEY---GGGRDLEDFVSFINE 247
           +A +Y V   PT+  F     +G+E         LE+    I  
Sbjct: 63  IAGRYAVFTGPTVLLF----YNGKEILRESRFISLENLERTIQL 102

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 82.3 bits (204), Expect = 8e-20
 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL 88
           T +     + + +  L+      CG C  +  +   +  ++   +     ++   + + +
Sbjct: 7   TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVE---KIEILLQDMQEI 63

Query: 89  CSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
             +Y V   PT+  F  G  E  +     S E L   + 
Sbjct: 64  AGRYAVFTGPTVLLFYNGK-EILRESRFISLENLERTIQ 101

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 87.1 bits (216), Expect = 4e-21
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           V     N +E   +  K  +V+FYA WCG CK +AP  +++A  +  +  +V+  +D +K
Sbjct: 23  VYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY--DGQIVIYKVDTEK 80

Query: 204 YKDLAEKYGVSGFPTLKFFPKGNK 227
            ++LA  +G+   P++ F P   K
Sbjct: 81  EQELAGAFGIRSIPSILFIPMEGK 104

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 17/119 (14%)

Query: 22  ADDVVVLTEDNFEKEVGQ------------DRGALVEFYAPWCGHCKKLAPEYEKLGASF 69
              V+ LT+  F  +V              D+ A+V+FYA WCG CK +AP  ++L   +
Sbjct: 8   NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY 67

Query: 70  K-KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
             +     I KVD ++ + L   +G++  P+I + P     P+  +G     +  + ++
Sbjct: 68  DGQIV---IYKVDTEKEQELAGAFGIRSIPSILFIPMEGK-PEMAQGAMPKASFKKAID 122

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 85.8 bits (213), Expect = 6e-21
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
            +V +   FD  ++ +++ V+V+F+A WCG CK +AP YE+ +  +     +V   +D D
Sbjct: 11  KIVTSQAEFDS-IISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVDVD 66

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD-LEDFV 242
           +  ++ EK  ++  PT K +  G+      G     L+  +
Sbjct: 67  EVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLI 107

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
            +V ++  F+  + Q+   +V+F+A WCG CK++AP YE+   ++ K       KVD DE
Sbjct: 11  KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV---FIKVDVDE 67

Query: 85  HKSLCSKYGVQGYPTIQWFPKG 106
              +  K  +   PT + +  G
Sbjct: 68  VSEVTEKENITSMPTFKVYKNG 89

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 85.0 bits (211), Expect = 8e-21
 Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 8/89 (8%)

Query: 144 VVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V+ TA + ++++ + K + ++V+F+A WCG C+N+AP  E +A       +V  A +D D
Sbjct: 3   VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI---PEVEFAKVDVD 59

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
           + ++ A KY V+  PT  F     KDG+E
Sbjct: 60  QNEEAAAKYSVTAMPTFVFI----KDGKE 84

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 75.4 bits (186), Expect = 4e-17
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 26  VVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           V+ T  + EK + +   R  +V+F+A WCG C+ +AP+ E L     +   V   KVD D
Sbjct: 3   VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE---VEFAKVDVD 59

Query: 84  EHKSLCSKYGVQGYPTIQWFPKG 106
           +++   +KY V   PT  +   G
Sbjct: 60  QNEEAAAKYSVTAMPTFVFIKDG 82

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 85.7 bits (212), Expect = 1e-20
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)

Query: 141 SNVVVLTADNFDEIVLDKSKD-----------VLVEFYAPWCGHCKNLAPTYEKVAAAFT 189
           S  + LT   F + + D                +V+FYA WCG CK +AP  E+++  + 
Sbjct: 22  SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEY- 80

Query: 190 LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 227
               + +  ++ DK  +LA  +G+   PT+ F P   +
Sbjct: 81  -AGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGE 117

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 78.7 bits (194), Expect = 6e-18
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 17/118 (14%)

Query: 23  DDVVVLTEDNFEKEVGQ------------DRGALVEFYAPWCGHCKKLAPEYEKLGASFK 70
              + LT   F K++              D+ A+V+FYA WCG CK +AP  E+L   + 
Sbjct: 22  SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA 81

Query: 71  -KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
            K     I KV+ D+   L   +G+Q  PTI + P          G  S E L  Y++
Sbjct: 82  GKIY---IYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNM-GALSKEQLKGYID 135

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 87.6 bits (217), Expect = 2e-20
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
            ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ 
Sbjct: 13  KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNI 70

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           D+    A KYG+ G PTL  F    K+GE
Sbjct: 71  DQNPGTAPKYGIRGIPTLLLF----KNGE 95

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 81.4 bits (201), Expect = 3e-18
 Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 10/127 (7%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGK 79
           +D ++ LT+D+F+ +V + D   LV+F+A WCG CK +AP  +++   ++ K     + K
Sbjct: 11  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLT---VAK 67

Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAV 139
           ++ D++     KYG++G PT+  F  G +   K  G  S   L E+++     N+  +A+
Sbjct: 68  LNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATK-VGALSKGQLKEFLDA----NLAGSAM 122

Query: 140 PSNVVVL 146
            S V+VL
Sbjct: 123 ESTVMVL 129

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 24/214 (11%)

Query: 141 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 198
            N+V +   N  + VL++S    VL  F++    HC  L P  E +AA +      ++A 
Sbjct: 7   ENIVNINESNLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY--NGQFILAK 63

Query: 199 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG------GRDLEDFVSFINEKCGTS 252
           LD D  + +A ++G+   PT+  F    ++G+   G         +   +  +  +    
Sbjct: 64  LDCDAEQMIAAQFGLRAIPTVYLF----QNGQPVDGFQGPQPEEAIRALLDXVLPREEEL 119

Query: 253 RDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKV 312
              +               L+ +    S    +      E  + +     A    +   +
Sbjct: 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAE--AVLXTI 177

Query: 313 AKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADE 346
                D            L   ++    AA   E
Sbjct: 178 PLQDQD-------TRYQGLVAQIELLXQAADTPE 204

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 81.4 bits (201), Expect = 8e-18
 Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 22  ADDVVVLTEDNFEK--EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGK 79
            +++V + E N ++  E       L  F++    HC +L P  E L A +      ++ K
Sbjct: 6   VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY--NGQFILAK 63

Query: 80  VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           +DCD  + + +++G++  PT+  F  G      ++GP+  EA+   ++
Sbjct: 64  LDCDAEQMIAAQFGLRAIPTVYLFQNGQPVD-GFQGPQPEEAIRALLD 110

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 84.7 bits (210), Expect = 2e-20
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 11/100 (11%)

Query: 136 IAAVPSNVVVL-TADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE 191
           +AA    V+   T   FD  +    D  K V+++F A WCG C+ +AP + + A  F   
Sbjct: 1   MAAEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF--- 57

Query: 192 DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
              +   +D D+ KD+AE Y V   PT  F     KDGE+
Sbjct: 58  PGAIFLKVDVDELKDVAEAYNVEAMPTFLFI----KDGEK 93

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 25  VVVLTEDNFEKEVGQDRGA----LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +   T+  F+  +   +      +++F A WCG C+ +AP + +    F      +  KV
Sbjct: 9   IACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF---PGAIFLKV 65

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKG 106
           D DE K +   Y V+  PT  +   G
Sbjct: 66  DVDELKDVAEAYNVEAMPTFLFIKDG 91

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 83.9 bits (208), Expect = 2e-20
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 143 VVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
             V +  +F   +    S+  +V+F    CG C  +AP +  ++  +      V   +D 
Sbjct: 4   KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDV 60

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD-LEDFV 242
            + +  A    +S  PT +FF    +  +  G     LE+ +
Sbjct: 61  HQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKI 102

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 25  VVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
             V ++ +F+ E+     R A+V+F    CG C ++AP +  +     K    +  +VD 
Sbjct: 4   KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMS---NKYPQAVFLEVDV 60

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKG 106
            + +   +   +   PT Q+F   
Sbjct: 61  HQCQGTAATNNISATPTFQFFRNK 84

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 143 VVVLTADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199
           +V+ +   +D  +    ++ K ++V+F A WCG CK +AP +E ++  +     V+   +
Sbjct: 5   IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY--AGKVIFLKV 62

Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNK 227
           D D    +AE  G++  PT   +  G K
Sbjct: 63  DVDAVAAVAEAAGITAMPTFHVYKDGVK 90

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 25  VVVLTEDNFEKEVGQDRGA----LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +V+ ++  ++ ++ + +      +V+F A WCG CK +AP +E L   +  A  V+  KV
Sbjct: 5   IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY--AGKVIFLKV 62

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKG 106
           D D   ++    G+   PT   +  G
Sbjct: 63  DVDAVAAVAEAAGITAMPTFHVYKDG 88

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 85.3 bits (211), Expect = 3e-20
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 138 AVPSNVVVLT-ADNFDEIVLDKS-KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 195
           A  + V  +  A  F+E++  K+   ++V F+APW   C  +     ++A        V 
Sbjct: 9   AAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVS 65

Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
              L+A+   +++EKY +S  PT  FF    K+ ++
Sbjct: 66  FVKLEAEGVPEVSEKYEISSVPTFLFF----KNSQK 97

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 73.4 bits (180), Expect = 6e-16
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 25  VVVLTEDNFEKEVGQDRGALV--EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
             V +   FE+ +     +L+   F+APW   C ++     +L     +       K++ 
Sbjct: 15  EEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVS---FVKLEA 71

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKG 106
           +    +  KY +   PT  +F   
Sbjct: 72  EGVPEVSEKYEISSVPTFLFFKNS 95

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 84.4 bits (209), Expect = 3e-20
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 133 NVKIAAVPSNVV-VLTADNFDEI---VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF 188
           ++++A+    V+   T + ++E      +    V+V+F A WCG C+ +AP +  +A   
Sbjct: 8   HLEMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL 67

Query: 189 TLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
               +V+   +D D+ K +A  + +   PT  F     K+G+ 
Sbjct: 68  ---PNVLFLKVDTDELKSVASDWAIQAMPTFMFL----KEGKI 103

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 72.0 bits (177), Expect = 9e-16
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL 88
             +  +K        +V+F A WCG C+ +AP +  L         VL  KVD DE KS+
Sbjct: 27  WNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN---VLFLKVDTDELKSV 83

Query: 89  CSKYGVQGYPTIQWFPKG 106
            S + +Q  PT  +  +G
Sbjct: 84  ASDWAIQAMPTFMFLKEG 101

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 84.0 bits (208), Expect = 4e-20
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 131 GTNVKIAAVPSNVV-VLTADNFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAA 186
                +AA    V+     D FD  +    +  K V+++F A WCG C+ +AP + + A 
Sbjct: 4   AAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK 63

Query: 187 AFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
            F      V   +D D+ K++AEKY V   PT  F     KDG E
Sbjct: 64  KFP---GAVFLKVDVDELKEVAEKYNVEAMPTFLFI----KDGAE 101

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 25  VVVLTEDNFEKEVGQ----DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +    +D F+ ++ +     +  +++F A WCG C+ +AP + +    F      +  KV
Sbjct: 17  IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKF---PGAVFLKV 73

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKG 106
           D DE K +  KY V+  PT  +   G
Sbjct: 74  DVDELKEVAEKYNVEAMPTFLFIKDG 99

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 83.5 bits (207), Expect = 4e-20
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 140 PSNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 197
             +V  + +    +  LD + D  V+V+F A WCG  K + P +  ++  ++   +V+  
Sbjct: 10  HGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFL 66

Query: 198 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
            +D D  +D+A +  V   PT +FF KG K GE
Sbjct: 67  EVDVDDCQDVASECEVKSMPTFQFFKKGQKVGE 99

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 72.7 bits (179), Expect = 4e-16
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 25  VVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
             + ++  F++ +    D+  +V+F A WCG  K + P +  L   +     V+  +VD 
Sbjct: 14  KQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDV 70

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKG 106
           D+ + + S+  V+  PT Q+F KG
Sbjct: 71  DDCQDVASECEVKSMPTFQFFKKG 94

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 83.1 bits (206), Expect = 5e-20
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
            + LT  NF +  +     VLV+F+A WCG C+ +AP  E+ A A    D V VA L+ D
Sbjct: 2   TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAH--ADKVTVAKLNVD 58

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           +  +   ++G+   PTL  F    K G 
Sbjct: 59  ENPETTSQFGIMSIPTLILF----KGGR 82

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
            + LT+ NF++ +  D   LV+F+A WCG C+ +AP  E+   +   A  V + K++ DE
Sbjct: 2   TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAH--ADKVTVAKLNVDE 59

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           +    S++G+   PT+  F  G    +   G +  E L   + 
Sbjct: 60  NPETTSQFGIMSIPTLILFKGGRPVKQLI-GYQPKEQLEAQLA 101

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 82.7 bits (205), Expect = 6e-20
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 143 VVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           V  + +    +  LD + D  V+V+F A WCG CK + P +  ++  ++   +V+   +D
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVD 58

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNK 227
            D  +D+A +  V   PT +FF KG K
Sbjct: 59  VDDCQDVASESEVKSMPTFQFFKKGQK 85

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 71.9 bits (177), Expect = 6e-16
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 25  VVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
             + ++  F++ +    D+  +V+F A WCG CK + P +  L   +     V+  +VD 
Sbjct: 3   KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDV 59

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKG 106
           D+ + + S+  V+  PT Q+F KG
Sbjct: 60  DDCQDVASESEVKSMPTFQFFKKG 83

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 83.3 bits (206), Expect = 8e-20
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 13/117 (11%)

Query: 145 VLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           + T D  ++ +++ K K V+++ YA WC  CK                 D V+   +   
Sbjct: 16  IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 75

Query: 204 YKD----LAEKYGVSGFPTLKFFPKGNKDGEEYG-----GGRDLEDFVSFINEKCGT 251
                  L +   V G PT+ FF   +  G+E+      G  D E F + + ++   
Sbjct: 76  NDAQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDRQPH 129

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 75.2 bits (185), Expect = 9e-17
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 27  VLTEDNFEKEVGQDRG--ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC-- 82
           + T D   + + + +G   +++ YA WC  CK+            K     ++ + +   
Sbjct: 16  IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 75

Query: 83  --DEHKSLCSKYGVQGYPTIQWFPKGS--LEPKKYEGPRSTEALAEYVNNEGGTNVK 135
              +  +L     V G PTI +F          +  G    E  + ++ +    +  
Sbjct: 76  NDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPHHHH 132

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           +V +T  +FD  V       LV+F+A  CG CK +AP  E++AA +  E    +  LD D
Sbjct: 5   IVKVTDADFDSKVESG--VQLVDFWATACGPCKMIAPVLEELAADY--EGKADILKLDVD 60

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           +    A KY V   PTL  F    KDG+
Sbjct: 61  ENPSTAAKYEVMSIPTLIVF----KDGQ 84

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 75.4 bits (186), Expect = 3e-17
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVDCD 83
           +V +T+ +F+ +V      LV+F+A  CG CK +AP  E+L A ++ KA    I K+D D
Sbjct: 5   IVKVTDADFDSKVESG-VQLVDFWATACGPCKMIAPVLEELAADYEGKAD---ILKLDVD 60

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           E+ S  +KY V   PT+  F  G    K   G +  E LAE ++
Sbjct: 61  ENPSTAAKYEVMSIPTLIVFKDGQPVDKVV-GFQPKENLAEVLD 103

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 82.3 bits (203), Expect = 3e-19
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 147 TADNFDEIVLDKS-KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           +    D+ +   + K +++ F       C  L     K ++         +  +D D+  
Sbjct: 10  SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDL--SKMAAIYLVDVDQTA 67

Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR---------DLEDFVSFINEKCGTSRDGK 256
              + + +S  P+  FF  G     +YG              +DF+  I      +  GK
Sbjct: 68  VYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGK 127

Query: 257 GQLTS 261
             + S
Sbjct: 128 LIVQS 132

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 65.4 bits (159), Expect = 4e-13
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 29  TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
           ++   ++ +    ++  ++ F       C +L     K  +     K   I  VD D+  
Sbjct: 10  SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS--KMAAIYLVDVDQTA 67

Query: 87  SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 129
                + +   P+  +F  G    K   G             +
Sbjct: 68  VYTQYFDISYIPSTVFFFNGQ-HMKVDYGSPDHTKFVGSFKTK 109

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 81.2 bits (201), Expect = 3e-19
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           +V  T  +F     +    VL +F+APWCG  K +AP  E++       D + +  +D D
Sbjct: 3   IVKATDQSFSAETSEGV--VLADFWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVD 58

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           + ++ A KYGV   PTL       KDGE
Sbjct: 59  ENQETAGKYGVMSIPTLLVL----KDGE 82

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 76.9 bits (190), Expect = 1e-17
 Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFK-KAKSVLIGKVDCD 83
           +V  T+ +F  E   +   L +F+APWCG  K +AP  E+L      K K   I K+D D
Sbjct: 3   IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLK---IVKIDVD 58

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           E++    KYGV   PT+     G +      G +  EAL E VN
Sbjct: 59  ENQETAGKYGVMSIPTLLVLKDGEVVETSV-GFKPKEALQELVN 101

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 81.3 bits (201), Expect = 4e-19
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 137 AAVPSNVV-VLTADNFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED 192
           AAV + V+ V + + +   +       K V+++F A WCG C+ +AP +  +A  F    
Sbjct: 8   AAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF---P 64

Query: 193 DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
           + V   +D D+ K +AE++ V   PT  F     K+G+ 
Sbjct: 65  NAVFLKVDVDELKPIAEQFSVEAMPTFLFM----KEGDV 99

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC 89
               E+     +  +++F A WCG C+ +AP +  L   F    + +  KVD DE K + 
Sbjct: 24  TMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF---PNAVFLKVDVDELKPIA 80

Query: 90  SKYGVQGYPTIQWFPKG 106
            ++ V+  PT  +  +G
Sbjct: 81  EQFSVEAMPTFLFMKEG 97

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 81.4 bits (201), Expect = 4e-19
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 14/122 (11%)

Query: 136 IAAVPSNVVVLTADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPT--YEKVAAAFTL 190
           ++   ++ +     +F E +     + K + V+ +  WCG CK L+     + + A +  
Sbjct: 1   MSLAQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADY-F 59

Query: 191 EDDVVVANLDADKY--KDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFI 245
               V   +D +K    +L +KYGV  +PTL F    N  GE      G  D  + +  +
Sbjct: 60  NRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFI---NSSGEVVYRLVGAEDAPELLKKV 116

Query: 246 NE 247
             
Sbjct: 117 KL 118

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 9/119 (7%)

Query: 18  VSALADDVVVLTEDNFEKEV----GQDRGALVEFYAPWCGHCKKLAPE--YEKLGASFKK 71
           +S    D +   E +F + +     +D+   V+ +  WCG CK+L+     + L A +  
Sbjct: 1   MSLAQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN 60

Query: 72  AKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
            +  +  K+D +  E   L  KYGV  YPT+ +         +  G      L + V  
Sbjct: 61  -RHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKL 118

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 80.1 bits (198), Expect = 8e-19
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 143 VVVLTADNFDEI--VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           + +   + F  +       K +++ F+  W   CK L   +E ++   +   +V   ++D
Sbjct: 3   IEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPS-NSNVSFLSID 61

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNK 227
           AD+  +++E + +S  P      KG  
Sbjct: 62  ADENSEISELFEISAVPYFIIIHKGTI 88

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 70.5 bits (173), Expect = 3e-15
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 31  DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCS 90
                    D+  ++ F+  W   CK L   +E +      +  V    +D DE+  +  
Sbjct: 12  TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN-VSFLSIDADENSEISE 70

Query: 91  KYGVQGYPTIQWFPKG 106
            + +   P      KG
Sbjct: 71  LFEISAVPYFIIIHKG 86

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 20/103 (19%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCG--------------HCKNLAPTYEKVAAA 187
            ++ LT D+FD  VL     +LV+F+A WCG               CK +AP  +++A  
Sbjct: 4   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADE 63

Query: 188 FTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 230
           +  +  + VA L+ D+    A KYG+ G PTL  F    K+GE
Sbjct: 64  Y--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF----KNGE 100

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 70.2 bits (172), Expect = 4e-15
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 18/121 (14%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCG--------------HCKKLAPEYEKLG 66
           +D ++ LT+D+F+ +V + D   LV+F+A WCG               CK +AP  +++ 
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61

Query: 67  ASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
             +     + + K++ D++     KYG++G PT+  F  G +   K  G  S   L E++
Sbjct: 62  DEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFL 118

Query: 127 N 127
           +
Sbjct: 119 D 119

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 13/99 (13%)

Query: 138 AVPSNVVVL-----TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED 192
           A    V+         ++F++      K ++V+F A WC  CK +AP + ++A  F    
Sbjct: 1   AEEGQVIACHTVDTWKEHFEK-GKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---P 56

Query: 193 DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
           +V    +D D+ K +AE++ V   PT  F     KDG+ 
Sbjct: 57  NVTFLKVDVDELKAVAEEWNVEAMPTFIFL----KDGKL 91

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL 88
            +++FEK  G  +  +V+F A WC  CK +AP + +L   F     V   KVD DE K++
Sbjct: 15  WKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN---VTFLKVDVDELKAV 71

Query: 89  CSKYGVQGYPTIQWFPKG 106
             ++ V+  PT  +   G
Sbjct: 72  AEEWNVEAMPTFIFLKDG 89

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 79.5 bits (196), Expect = 2e-18
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 143 VVVLTADNFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 199
            ++ T + +D+ +       K VL  F A WCG  + +AP Y +++  +     ++   +
Sbjct: 27  HLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY---PSLMFLVI 83

Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNK 227
           D D+  D +  + +   PT  F   G +
Sbjct: 84  DVDELSDFSASWEIKATPTFFFLRDGQQ 111

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 25  VVVLTEDNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
            ++ T++ +++++       +  L  F A WCG  +++AP Y +L  ++     ++   +
Sbjct: 27  HLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS---LMFLVI 83

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKG 106
           D DE     + + ++  PT  +   G
Sbjct: 84  DVDELSDFSASWEIKATPTFFFLRDG 109

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218
           SK  +  F +P C HC       E+VA      D V V  ++  +    A +YG+   PT
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEM--PDAVEVEYINVMENPQKAMEYGIMAVPT 59

Query: 219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248
           +        D  E+ G    E  V  I ++
Sbjct: 60  IVIN----GDV-EFIGAPTKEALVEAIKKR 84

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
           +  F +P C HC       E++  + +   +V +  ++  E+     +YG+   PTI   
Sbjct: 6   IELFTSPMCPHCPAAKRVVEEV--ANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVIN 63

Query: 104 PKGSLEPKKYEGPRSTEALAEYVN 127
                   ++ G  + EAL E + 
Sbjct: 64  GDV-----EFIGAPTKEALVEAIK 82

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 77.6 bits (191), Expect = 6e-17
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 12/133 (9%)

Query: 16  FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSV 75
           F +     +++ L    F+  V       V FY+P C HC  LAP + +          +
Sbjct: 90  FGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL--L 147

Query: 76  LIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 135
            IG V+C + + LC   GV  YP++  F  G +   KY G RS E+L  +          
Sbjct: 148 RIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAFAMQ------- 199

Query: 136 IAAVPSNVVVLTA 148
              V S V  L+ 
Sbjct: 200 --HVRSTVTELST 210

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 153 EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG 212
           +  ++  +   V FY+P C HC +LAPT+ + A    ++  + +  ++    + L    G
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAK--EVDGLLRIGAVNCGDDRMLCRMKG 165

Query: 213 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248
           V+ +P+L  F  G     +Y G R  E  V+F  + 
Sbjct: 166 VNSYPSLFIFRSG-MAAVKYNGDRSKESLVAFAMQH 200

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 68.5 bits (168), Expect = 6e-15
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 221
            +  F +P C +C       ++    F   D + V  +D    ++ A +YG+   P +  
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEF--GDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61

Query: 222 FPKGNKDGE-EYGGGRDLEDFVSFINEK 248
                 +G   + G    E+    IN++
Sbjct: 62  ------NGVVRFVGAPSREELFEAINDE 83

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 60.8 bits (148), Expect = 4e-12
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI 100
           +  F +P C +C       ++    F     + + K+D    +    +YG+   P I
Sbjct: 5   IEVFTSPTCPYCPMAIEVVDEAKKEFGDK--IDVEKIDIMVDREKAIEYGLMAVPAI 59

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 67.2 bits (164), Expect = 5e-14
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 143 VVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           +  ++ + +   V +  KD  V++  Y      C  +      +A  F    +       
Sbjct: 12  LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAI 68

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG----GGRD--LEDFVSFINE 247
            +      E Y  +  PT+  +  G  +G+  G    GG +  LE+    ++E
Sbjct: 69  VN---SCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSE 118

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 24  DVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           ++  ++ + +  EV    +D   ++  Y      C  +      L   F + K     K 
Sbjct: 11  ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETK---FVKA 67

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSL 108
             +        Y     PTI  +  G +
Sbjct: 68  IVNS---CIEHYHDNCLPTIFVYKNGQI 92

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 14/113 (12%)

Query: 143 VVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           +  ++ + +   V +  +D  V++  Y      C  +      +A  F    +       
Sbjct: 5   LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAI 61

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG----GGRD--LEDFVSFINE 247
            +      + Y  +  PT+  +  G  + +  G    GG +  LE+    + E
Sbjct: 62  VN---SCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE 111

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 24  DVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           ++  ++ + +  EV    +D   ++  Y      C  +      L   F + K     K 
Sbjct: 4   ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETK---FVKA 60

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSL 108
             +        Y     PTI  +  G +
Sbjct: 61  IVNS---CIQHYHDNCLPTIFVYKNGQI 85

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 160 KDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKY--KDLAEKYGVS 214
           + V+V F++  C +C+ +         V+    LE   VVA++  D    ++LA +Y V 
Sbjct: 20  RMVMVYFHSEHCPYCQQMNTFVLSDPGVSRL--LEARFVVASVSVDTPEGQELARRYRVP 77

Query: 215 GFPTLKFF-PKGNKDGEEYG--GGRDLEDFVSFINE 247
           G PT  F  PK     E     G R   +F+  + +
Sbjct: 78  GTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQ 113

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 21/117 (17%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPE-------YEKLGASFKKAKSVLIGKVDC 82
            +         R  +V F++  C +C+++             L A F  A       V  
Sbjct: 9   PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVA------SVSV 62

Query: 83  D--EHKSLCSKYGVQGYPTIQWF-PKGSLEPKK-----YEGPRSTEALAEYVNNEGG 131
           D  E + L  +Y V G PT  +  PK     +                   V  +GG
Sbjct: 63  DTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGG 119

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 153 EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG 212
           +        ++V  +  WCG CK L P + +      L  + V+ NL+ ++ +   E + 
Sbjct: 40  KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEE-EPKDEDFS 98

Query: 213 VSG--FPTLKFFPKGNKDGEEYGGGRDLEDFVSF 244
             G   P + F     K   E         +  F
Sbjct: 99  PDGGYIPRILFLDPSGKVHPEIINENGNPSYKYF 132

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 59.3 bits (143), Expect = 6e-11
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC 89
           ED  ++        +V  +  WCG CK L P++ +     + + + ++  ++ DE +   
Sbjct: 36  EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLE-DEEEPKD 94

Query: 90  SKYGVQG--YPTIQWF-PKGSLEPKKYEGPRSTEALAEYVNNE 129
             +   G   P I +  P G + P+      +      YV+ E
Sbjct: 95  EDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAE 137

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 62.4 bits (151), Expect = 2e-12
 Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 45  VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD------EHKSLCSKYGVQGYP 98
             + A WC HC+     +              +  V+C            C++ G+  YP
Sbjct: 17  TMYGAYWCPHCQDQKELFGAAFDQ--------VPYVECSPNGPGTPQAQECTEAGITSYP 68

Query: 99  TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTN 133
           T  W   G    + Y G RS EALA          
Sbjct: 69  T--WIING----RTYTGVRSLEALAVASGYPLEEG 97

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 49.3 bits (117), Expect = 6e-08
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 223
             + A WC HC++    +          +     N           + G++ +PT     
Sbjct: 17  TMYGAYWCPHCQDQKELFGAAFDQVPYVE--CSPNGPGTPQAQECTEAGITSYPTWII-- 72

Query: 224 KGNKDGEEYGGGRDLED 240
               +G  Y G R LE 
Sbjct: 73  ----NGRTYTGVRSLEA 85

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 65.8 bits (159), Expect = 2e-12
 Identities = 30/128 (23%), Positives = 42/128 (32%), Gaps = 12/128 (9%)

Query: 9   ALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGAS 68
            L  +T   V A                + Q  G +  + A WC HC+     +   GA+
Sbjct: 168 FLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTM--YGAYWCPHCQDQKELF---GAA 222

Query: 69  FKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           F +   V              C++ G+  YPT  W   G    + Y G RS EALA    
Sbjct: 223 FDQVPYVECSPNGPGTPQAQECTEAGITSYPT--WIING----RTYTGVRSLEALAVASG 276

Query: 128 NEGGTNVK 135
                   
Sbjct: 277 YPLEEGRL 284

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 222
              + A WC HC++    +          +     N           + G++ +PT    
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQVPYVE--CSPNGPGTPQAQECTEAGITSYPTWII- 257

Query: 223 PKGNKDGEEYGGGRDLED 240
                +G  Y G R LE 
Sbjct: 258 -----NGRTYTGVRSLEA 270

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 61.8 bits (150), Expect = 4e-12
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 19/104 (18%)

Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD---ADKYKDLAEKYGV--- 213
           K  L+ F A WC  C+ L  +         +     V  +D    D+  +L++ YG    
Sbjct: 30  KPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQ 89

Query: 214 SGFPTLKFFPKGNKDGEEY----------GGGRDLEDFVSFINE 247
            G P +      N DG+                  +    F  +
Sbjct: 90  DGIPAVVVV---NSDGKVRYTTKGGELANARKMSDQGIYDFFAK 130

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 33  FEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC---DEHKSLC 89
                   +  L+ F A WC  C+ L         +   AK   + K+D    D +  L 
Sbjct: 22  LAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELS 81

Query: 90  SKYGV---QGYPTIQWF-PKGSL 108
             YG     G P +      G +
Sbjct: 82  QAYGDPIQDGIPAVVVVNSDGKV 104

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 58.8 bits (142), Expect = 4e-11
 Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 8/110 (7%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
            ++ V T     E +  K +          C +C+  A T   V A    +  +   N +
Sbjct: 12  KDLEVTTVVRAQEALDKK-ETATFFIGRKTCPYCRKFAGTLSGVVAE--TKAHIYFINSE 68

Query: 201 A----DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 246
                +  +    +YG+   P       G  +          ++   F  
Sbjct: 69  EPSQLNDLQAFRSRYGIPTVPGFVHITDGQINV-RCDSSMSAQEIKDFAG 117

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 49.6 bits (118), Expect = 7e-08
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           D+ V T    ++ + +   A        C +C+K A                 I  ++ +
Sbjct: 13  DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSG----VVAETKAHIYFINSE 68

Query: 84  EH------KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           E       ++  S+YG+   P       G +   + +   S + + ++  
Sbjct: 69  EPSQLNDLQAFRSRYGIPTVPGFVHITDGQIN-VRCDSSMSAQEIKDFAG 117

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 12/111 (10%)

Query: 145 VLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           + + + F E +  + K   ++V  Y      C  L  +   +AA +     V    + A 
Sbjct: 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIKAS 173

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDG------EEYGGGRDLEDFVSFINE 247
                 +++     PTL  +  G          E+        D  SF+NE
Sbjct: 174 N-TGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNE 223

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 7/85 (8%)

Query: 27  VLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           + + + F + +    +    +V  Y      C  L      L A +   K     K+   
Sbjct: 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVK---FCKIKAS 173

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSL 108
                  ++     PT+  +  G L
Sbjct: 174 NT-GAGDRFSSDVLPTLLVYKGGEL 197

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 53.8 bits (129), Expect = 5e-09
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 20/105 (19%)

Query: 160 KDVLVEF-YAPWCGHCKNLAP-TYEKVAAAFTLEDDVVVANLDADK-----------YKD 206
           K + + F  + WC  C  +     +           + +  +D  +            ++
Sbjct: 48  KPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQE 107

Query: 207 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINE 247
           L  +Y V+GFP L F    + +G++             +VS +  
Sbjct: 108 LKAQYKVTGFPELVFI---DAEGKQLARMGFEPGGGAAYVSKVKS 149

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 16/92 (17%)

Query: 30  EDNFEKEVGQDRGALVEF-YAPWCGHCKKLAPEYEKLG--ASFKKAKSVLIGKVDCDEHK 86
            +  E      +   + F  + WC  C K+  +  +      F      ++ +VD  +  
Sbjct: 37  AEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMV-EVDFPQKN 95

Query: 87  S-----------LCSKYGVQGYPTIQWF-PKG 106
                       L ++Y V G+P + +   +G
Sbjct: 96  HQPEEQRQKNQELKAQYKVTGFPELVFIDAEG 127

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 53.2 bits (127), Expect = 6e-09
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 145 VLTADNFDEIVLDKSKDVLVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           ++     D+ +    K V++ F           +LA    ++  AF     +V A + A+
Sbjct: 19  LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAF--PGRLVAAEVAAE 76

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 247
             + L  ++GV+  P+L       +     G     +D   +++ I  
Sbjct: 77  AERGLMARFGVAVCPSLAVV----QPERTLGVIAKIQDWSSYLAQIGA 120

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 27  VLTEDNFEKEVGQDRGALVEFYAP---WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           ++ E   +  +      +V F+            LA    +L  +F     ++  +V  +
Sbjct: 19  LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAF--PGRLVAAEVAAE 76

Query: 84  EHKSLCSKYGVQGYPTIQWFPKG 106
             + L +++GV   P++      
Sbjct: 77  AERGLMARFGVAVCPSLAVVQPE 99

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Length = 160

 Score = 51.7 bits (123), Expect = 3e-08
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 12/125 (9%)

Query: 147 TADNFDE-IVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
           +    D+ IV +  + V + F   +   C  +     KVA    +++  V+  +D  +  
Sbjct: 28  SGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVAD--DIKNFCVIYLVDITEVP 85

Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG---------RDLEDFVSFINEKCGTSRDGK 256
           D    Y +    ++ FF +      + G G          + ++F+  +      +R G+
Sbjct: 86  DFNTMYELYDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARKGR 145

Query: 257 GQLTS 261
           G + S
Sbjct: 146 GLVIS 150

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 30/118 (25%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK----------- 205
           ++K  ++ F+   CGHC+   P           +   V A N++    +           
Sbjct: 30  QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIG 89

Query: 206 ------------DLAEKYGVSGFPTLKFFPKGNKDG---EEYGGGRDLEDFVSFINEK 248
                       D    Y +   P L      +K+     +  G  +L+DF+    + 
Sbjct: 90  GWLNVRDSKNHTDFKITYDIYATPVLYVL---DKNKVIIAKRIGYENLDDFLVQYEKS 144

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 11/113 (9%), Positives = 29/113 (25%), Gaps = 31/113 (27%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----------------- 86
           ++ F+   CGHC++  P+        +     +    + +                    
Sbjct: 35  ILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYA-ANIERKDEEWLKFIRSKKIGGWLN 93

Query: 87  --------SLCSKYGVQGYPTIQWF---PKGSLEPKKYEGPRSTEALAEYVNN 128
                        Y +   P +  +       +  K+       + L +Y  +
Sbjct: 94  VRDSKNHTDFKITYDIYATPVL--YVLDKNKVIIAKRIGYENLDDFLVQYEKS 144

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 46.6 bits (110), Expect = 6e-07
 Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 13/98 (13%)

Query: 157 DKSKDVLVEFYAPWCGHCK----NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG 212
           DK++  L+ F  P C +C      +AP Y            V    +       L     
Sbjct: 16  DKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAP--VQRLQMRDPLPPGLELARP 73

Query: 213 VSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 247
           V+  PT            E G   G    + F   +  
Sbjct: 74  VTFTPTFVLM----AGDVESGRLEGYPGEDFFWPMLAR 107

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS--LCSKYGVQGYPTI 100
           L+ F  P C +C +   E         + ++  + ++   +     L     V   PT 
Sbjct: 22  LLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTF 80

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 1/75 (1%)

Query: 160 KDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218
           K ++V  +   C + + L     +        ++  ++ NL  +         G      
Sbjct: 45  KPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRI 104

Query: 219 LKFFPKGNKDGEEYG 233
           +   P      +  G
Sbjct: 105 MFVDPSLTVRADIAG 119

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG-KVDCDEHKSL 88
           E+         +  +V  +   C + + L   + +     + A++  I   +  +     
Sbjct: 34  EEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKN 93

Query: 89  CSKYGVQGYPTIQWF-PKGSLEPK 111
            S  G Q  P I +  P  ++   
Sbjct: 94  LSPDG-QYVPRIMFVDPSLTVRAD 116

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 26/113 (23%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLD---------------- 200
           + K VLV F+A WC +C++  P+ +++  +F   D VV+A N++                
Sbjct: 40  RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNF 99

Query: 201 -ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLED--FVSFINE 247
            +D    + ++YG +  P        ++ G       GG + +    VS++  
Sbjct: 100 LSDATGQVQQRYGANRLPDTFIV---DRKGIIRQRVTGGIEWDAPKVVSYLKS 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 57/390 (14%), Positives = 106/390 (27%), Gaps = 131/390 (33%)

Query: 54  HCKKLAPEYEKLGASFKK----------AKSVLIGKVDCDE-----HK---------SLC 89
             K +   +E    +F             KS+L  K + D                 +L 
Sbjct: 17  QYKDILSVFED---AFVDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSGTLRLFWTLL 72

Query: 90  SKYGVQGYPTIQWFPKGSLEP----------KKYEGP-RSTEALAEYVNNEGGTNVKIAA 138
           SK        +Q F +  L             +   P   T    E  +     N   A 
Sbjct: 73  SK----QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 139 --VP------------------SNVVV----------LTADNFDEIVLDKSKDVLVEFYA 168
             V                    NV++          +  D     V   S  V  +   
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-----VC-LSYKVQCKMDF 182

Query: 169 P--W--CGHC-------KNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 217
              W    +C       + L     ++   +T   D    +    K +  + +  +    
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLL 238

Query: 218 TLKFFPKG--------NKDGEEYGGGRDLEDFVSFINEKCG---TSRDGKG---QLTSTA 263
             K +           N         +    F    N  C    T+R  K     L++  
Sbjct: 239 KSKPYENCLLVLLNVQNA--------KAWNAF----NLSCKILLTTRF-KQVTDFLSAAT 285

Query: 264 GIVASLDALVKEFVAASGDEKKAVFSK-IERGV-----EVLEGSTARHGKIYLKVAKNYM 317
               SLD         + DE K++  K ++        EVL  +  R   I   + ++ +
Sbjct: 286 TTHISLDHHSMTL---TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGL 341

Query: 318 DKGSDYAKKEIDRLQRMLDKSISAAKADEF 347
               ++     D+L  +++ S++  +  E+
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 18/118 (15%)

Query: 145 VLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           + T + F E +  + K   ++V  Y      C  L  + E +AA +     V    + A 
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRAS 160

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDG-----EEYGGGR----DLEDFVS---FINEK 248
                 +++     PTL  +  G          E         D+E F++    + E+
Sbjct: 161 N-TGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLLPER 217

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 7/85 (8%)

Query: 27  VLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           + T + F + +    +    +V  Y      C  L    E L A +   K     K+   
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVK---FCKIRAS 160

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSL 108
                  ++     PT+  +  G L
Sbjct: 161 NT-GAGDRFSSDVLPTLLVYKGGEL 184

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 30/114 (26%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----------------- 86
           L+ F+A WC    +   E ++L   +KK K+  +  +  D  +                 
Sbjct: 37  LLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQV 96

Query: 87  --------SLCSKYGVQGYPTIQWF---PKGSLEPKKYEGPRSTEALAEYVNNE 129
                       +Y +   PT       P G +  +  +G   T  L E +  E
Sbjct: 97  CDFTGLSSETAKQYAILTLPTN--ILLSPTGKILARDIQGEALTGKLKELLKTE 148

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 25/86 (29%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----------- 206
           +++ +L+ F+A WC          +++   +    +  +  +  D  ++           
Sbjct: 32  RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTL 91

Query: 207 --------------LAEKYGVSGFPT 218
                          A++Y +   PT
Sbjct: 92  SWDQVCDFTGLSSETAKQYAILTLPT 117

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 25/109 (22%)

Query: 158 KSKDVLVEFYAPWCGHCK----NLAPTYEK--------------------VAAAFTLEDD 193
             K V   F A WC   +     L   Y+K                     A  F     
Sbjct: 27  AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPW 86

Query: 194 VVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDF 241
           + V    ++  + L++ + V   PTL                   ++D 
Sbjct: 87  LAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDP 135

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 33/120 (27%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYKD---------- 206
           K K  L++F+A WC  C +     EK A         ++        ++           
Sbjct: 37  KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYA 96

Query: 207 ----------------LAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 247
                           +A+   +S +P+        KDG+      G  +    ++ I  
Sbjct: 97  GLNYPKLPVVTDNGGTIAQNLNISVYPSWALI---GKDGDVQRIVKGSINEAQALALIRN 153

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 30/125 (24%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLD---------------- 200
           K + V+V F+A WC  C+   P+  ++ AA   +   ++  ++D                
Sbjct: 27  KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGF 86

Query: 201 -----ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLED--FVSFINEKCG 250
                 D  K + + YG +G P        ++ G       G  + +    ++F+N +  
Sbjct: 87  TLPVLLDADKRVGKLYGTTGVPETFVI---DRHGVILKKVVGAMEWDHPEVIAFLNNELS 143

Query: 251 TSRDG 255
            +R+G
Sbjct: 144 KAREG 148

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 28/116 (24%)

Query: 160 KDVLVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDVVVANLDADKYKDLAE--------- 209
           K V+++F    C +C+ +    +     +  + +D V+  L  D    L E         
Sbjct: 48  KPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGT 107

Query: 210 -----------------KYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFINE 247
                            K+G +  P       +GN   + Y    D+  +++F+  
Sbjct: 108 ERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQT 163

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 28/115 (24%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK----------- 205
           + K  L+ F+ P C  C +  P   K A  +  ++  V+A     D  +           
Sbjct: 27  QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGL 86

Query: 206 ----------DLAEKYGVSGFPTLKFFPKGNKDGE---EYGGGRDLEDFVSFINE 247
                      + + +G   +PT        K GE    Y G  D       I+ 
Sbjct: 87  PFTVMYDADKAVGQAFGTQVYPTSVLI---GKKGEILKTYVGEPDFGKLYQEIDT 138

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 25/110 (22%)

Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD------------------- 200
           K  ++ F+APWC  C+  AP   +VAA+      V VA LD                   
Sbjct: 26  KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85

Query: 201 -ADKYKDLAEKYGVSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINE 247
            AD    +   +GV+  P   F    +  G  +   G    ++    +  
Sbjct: 86  LADTDGSVWANFGVTQQPAYAFV---DPHGNVDVVRGRMSQDELTRRVTA 132

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 27/107 (25%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD--------------------CD 83
           ++ F+APWC  C+  AP   ++ AS  +   V +  +D                     D
Sbjct: 29  VLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLAD 88

Query: 84  EHKSLCSKYGVQGYPTIQWF---PKGSLEPKKYEGPRSTEALAEYVN 127
              S+ + +GV   P   +    P G++      G  S + L   V 
Sbjct: 89  TDGSVWANFGVTQQPA--YAFVDPHGNV--DVVRGRMSQDELTRRVT 131

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 30/116 (25%)

Query: 157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDA-------------- 201
           +K +  ++ F+  WC  CK   P ++    A   +   +V  NL                
Sbjct: 32  NKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKA 91

Query: 202 ---------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFI 245
                    D   +L ++Y +   PT       N+ GE      G    E    + 
Sbjct: 92  NKLTFPIVLDSKGELMKEYHIITIPTSFLL---NEKGEIEKTKIGPMTAEQLKEWT 144

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 26/88 (29%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVVA-NLDADKYK-------- 205
           K++  ++ FY P C +C+     + ++ A   + ++    V+A   D ++ +        
Sbjct: 26  KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYM 85

Query: 206 --------------DLAEKYGVSGFPTL 219
                            + Y +   PT+
Sbjct: 86  PQGWIVGWNKAGDIRTRQLYDIRATPTI 113

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 26/83 (31%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGA--SFKKAKSVLIGKVDCDEHK--------------- 86
           ++ FY P C +C+K    + ++ A     +  ++ +  +  DE++               
Sbjct: 31  MLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWI 90

Query: 87  ---------SLCSKYGVQGYPTI 100
                         Y ++  PTI
Sbjct: 91  VGWNKAGDIRTRQLYDIRATPTI 113

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 32/119 (26%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK----------- 205
           K K V ++F+A WC  C    P  +++A     +  V+   +      +           
Sbjct: 21  KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKG 80

Query: 206 --------------DLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 247
                          L E YGV  +PT  F    +K+G+      G  + +  +  + E
Sbjct: 81  LDYKNLPVLVDPSGKLLETYGVRSYPTQAFI---DKEGKLVKTHPGFMEKDAILQTLKE 136

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 157 DKSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVVANLDADKY--KDLAEKYGV 213
            ++K +++         C+ L    +   A    + +  +   +  D    +   + Y +
Sbjct: 40  MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKL 99

Query: 214 SGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFINE 247
             FP +    P+  +   E+    D+  F+  +  
Sbjct: 100 GDFPYVSILDPRTGQKLVEW-HQLDVSSFLDQVTG 133

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 39  QDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ 95
           Q++  ++         C+ L  +    E +    ++         D +E +     Y + 
Sbjct: 41  QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLG 100

Query: 96  GYPTIQWF-PKGSLEPKKYEGPRSTEALAE 124
            +P +    P+   +  ++     +  L +
Sbjct: 101 DFPYVSILDPRTGQKLVEWHQLDVSSFLDQ 130

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* Length = 178

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 13/109 (11%)

Query: 23  DDVVVLTEDNFEKEVGQDRG--ALVEFYAPW-------CGHCKKLAPEYEKLGASFKKA- 72
             V+ +T DN+        G   ++             C  C      Y  +    +   
Sbjct: 18  TGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQA 77

Query: 73  --KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF-PKGSLEPKKYEGPRS 118
                L   VD +E   L     +Q  P +  + P  S +  ++E   S
Sbjct: 78  PQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTS 126

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* Length = 178

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 28/140 (20%)

Query: 140 PSNVVVLTADNFDEIVLDKSKD--VLVEFYAPW-------CGHCKNLAPTYEKVAAAFTL 190
            + V+ +TADN+  +          ++             C  C +   TY  VA     
Sbjct: 17  DTGVITVTADNYPLL-SRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRS 75

Query: 191 ---EDDVVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEY-------------- 232
              +   +   +D ++   L +   +   P L  + P  +    ++              
Sbjct: 76  QAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVP 135

Query: 233 GGGRDLEDFVSFINEKCGTS 252
               +   F  F+ +    S
Sbjct: 136 ENAENTLQFGDFLAKILNIS 155

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Length = 216

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 172 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-------LAEKYGVSGFPTLKFFPK 224
                     +K+A    + +        +D+ K           ++G+SGFP L     
Sbjct: 126 QEDVAQLAILKKLAVDLGIPESRFTPVFQSDEAKQRTLAGFQRVAQWGISGFPAL-VVES 184

Query: 225 GNKDGEEYGGGRDLEDFVSFINE 247
           G        G R +E     ++ 
Sbjct: 185 GTDRYLITTGYRPIEALRQLLDT 207

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 26/88 (29%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAP---TYEKVAAAFTLEDDVVVA-NLDADKYK-------- 205
            ++  L+    P C  C  +         +      +   V++   D +  +        
Sbjct: 30  PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDF 89

Query: 206 --------------DLAEKYGVSGFPTL 219
                              Y +   PTL
Sbjct: 90  AKEWTNGYDKELVIKNKNLYDLRAIPTL 117

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 29/113 (25%)

Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD------------------- 200
           K  ++ F+ PWC  C   AP+  +VAAA      V    +                    
Sbjct: 25  KPAVLWFWTPWCPFCNAEAPSLSQVAAAN---PAVTFVGIATRADVGAMQSFVSKYNLNF 81

Query: 201 ---ADKYKDLAEKYGVSGFPTLKFF--PKGN-KDGEEYGGGRDLEDFVSFINE 247
               D    +  +Y V   P    F    G              ++    +  
Sbjct: 82  TNLNDADGVIWARYNVPWQPA-FVFYRADGTSTFVNNPTAAMSQDELSGRVAA 133

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 25/107 (23%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-------------------CDE 84
           ++ F+ PWC  C   AP   ++ A+      V I                        D 
Sbjct: 28  VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDA 87

Query: 85  HKSLCSKYGVQGYPTIQWF---PKGSLEP-KKYEGPRSTEALAEYVN 127
              + ++Y V   P   +      G+           S + L+  V 
Sbjct: 88  DGVIWARYNVPWQPA--FVFYRADGTSTFVNNPTAAMSQDELSGRVA 132

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 28/115 (24%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK----------- 205
           K K + ++ +A WCG C+   P  +++   +  +D   V+ + D +K             
Sbjct: 29  KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLK 88

Query: 206 ----------DLAEKYGVSGFPTLKFFPKGNKDG---EEYGGGRDLEDFVSFINE 247
                        + Y ++G P        ++DG                   NE
Sbjct: 89  GIQLHMGTDRTFMDAYLINGIPRFILL---DRDGKIISANMTRPSDPKTAEKFNE 140

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 25/108 (23%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV--ANLDADK------------ 203
             K V + F A WC  C+   P   +      +  +  V   + D ++            
Sbjct: 27  VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPW 86

Query: 204 ----------YKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLED 240
                       +L + +GV   PTL                 R +ED
Sbjct: 87  LALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 31/113 (27%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----------------- 86
           LV+F+   C  C+K  P   K   +FK     + G V  D  +                 
Sbjct: 33  LVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYG-VSTDRREEDWKKAIEEDKSYWNQV 91

Query: 87  --------SLCSKYGVQGYPTIQWF---PKGSLEPKKYEGPRSTEALAEYVNN 128
                    +   Y + G+P I      P+G +  K+  G      + ++VN 
Sbjct: 92  LLQKDDVKDVLESYCIVGFPHI--ILVDPEGKIVAKELRGDDLYNTVEKFVNG 142

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 30/112 (26%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADK------------- 203
           K K VLV+F+   C  C+   P   K   AF  +   +   + D  +             
Sbjct: 28  KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSY 87

Query: 204 ----------YKDLAEKYGVSGFPTLKFFPKGNKDG---EEYGGGRDLEDFV 242
                      KD+ E Y + GFP +      + +G    +   G DL + V
Sbjct: 88  WNQVLLQKDDVKDVLESYCIVGFPHIILV---DPEGKIVAKELRGDDLYNTV 136

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 25/111 (22%)

Query: 158 KSKDVLVEFYAPWCGHCK----NLAPTYEK--------------------VAAAFTLEDD 193
             K V   F A WC  C+     L   YEK                      A +     
Sbjct: 47  SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPW 106

Query: 194 VVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVS 243
           + +   + +  + L +KY V   PTL                    +D + 
Sbjct: 107 LSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMG 157

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 24/80 (30%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----------------- 86
              F A WC  C+   P+  +       +K+  I     DE +                 
Sbjct: 52  FFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPF 111

Query: 87  -------SLCSKYGVQGYPT 99
                  +L  KY V+  PT
Sbjct: 112 ANRNIVEALTKKYSVESIPT 131

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 29/109 (26%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----------------- 86
            + F+  WC  CKK  P        FK     ++  V+  E K                 
Sbjct: 30  FLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA-VNVGESKIAVHNFMKSYGVNFPVV 88

Query: 87  -----SLCSKYGVQGYPTIQWF---PKGSLEPKKYEGPRSTEALAEYVN 127
                 +   Y V   PT   F   P+G +  K   G  +   + +Y+N
Sbjct: 89  LDTDRQVLDAYDVSPLPTT--FLINPEGKVV-KVVTGTMTESMIHDYMN 134

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 27/112 (24%)

Query: 160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLD------------------ 200
           K V + F+  WC  CK   P        F  +   +VA N+                   
Sbjct: 27  KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86

Query: 201 --ADKYKDLAEKYGVSGFPTLKFFPKGNKDG---EEYGGGRDLEDFVSFINE 247
              D  + + + Y VS  PT       N +G   +   G         ++N 
Sbjct: 87  VVLDTDRQVLDAYDVSPLPTTFLI---NPEGKVVKVVTGTMTESMIHDYMNL 135

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 24/86 (27%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------- 203
             K V   F A WC   +   P       A   + +  V  +  D+              
Sbjct: 27  AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPW 86

Query: 204 ----------YKDLAEKYGVSGFPTL 219
                      + L   + V   PTL
Sbjct: 87  LALPFEDRKGMEFLTTGFDVKSIPTL 112

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 24/80 (30%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE------------------- 84
              F A WC   +   P+      +  + K+  +  +  DE                   
Sbjct: 32  FFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF 91

Query: 85  -----HKSLCSKYGVQGYPT 99
                 + L + + V+  PT
Sbjct: 92  EDRKGMEFLTTGFDVKSIPT 111

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 35/120 (29%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV-----------ANLDA----- 201
             K  L+ F++  C  CK   P   +    +  +D + V            +        
Sbjct: 28  GEKPTLIHFWSISCHLCKEAMPQVNEFRDKY--QDQLNVVAVHMPRSEDDLDPGKIKETA 85

Query: 202 -----------DKYKDLAEKYGVSGFPTLKFFPKGNKDG---EEYGGGRDLEDFVSFINE 247
                      D    L + +     P    F   +K G       GG  ++     +N 
Sbjct: 86  AEHDITQPIFVDSDHALTDAFENEYVPAYYVF---DKTGQLRHFQAGGSGMKMLEKRVNR 142

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 Length = 197

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 22/146 (15%)

Query: 59  APEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 118
             EY+    SF     V        + +   +   ++G P +  F  G     KY+    
Sbjct: 20  GEEYDAAWNSFVVKSLV-------AQQEKAAADVQLRGVPAM--FVNG-----KYQLNPQ 65

Query: 119 TEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDE----IVLDK---SKDVLVEFYAPWC 171
               +            +  +       T   +++      L+K       ++EF++ +C
Sbjct: 66  GMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPVAGAPQVLEFFSFFC 125

Query: 172 GHCKNLAPTYEKVAA-AFTLEDDVVV 196
            HC                L + V +
Sbjct: 126 PHCYQFEEVLHISDNVKKKLPEGVKM 151

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLD-ADKYKDLAEKYGVSG 215
           K+   +V  +A WCG C+   P   K   A       +V   LD +D   +  ++  VS 
Sbjct: 23  KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVS- 81

Query: 216 FPTL 219
           +P  
Sbjct: 82  YPIW 85

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 24/92 (26%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK----------- 205
               V ++F+A WCG C+   P   ++ A +  +   VVA NLDA               
Sbjct: 27  TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAE 86

Query: 206 ---------DLAEKYGVSGFPTLKFF--PKGN 226
                         YGV G PT  F     G 
Sbjct: 87  FTVAFDPKGQTPRLYGVKGMPT-SFLIDRNGK 117

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 22/83 (26%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK----------- 205
           K K VL++F                ++   +  +   +   +LD D++            
Sbjct: 34  KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWV 93

Query: 206 ----------DLAEKYGVSGFPT 218
                          Y V+  P+
Sbjct: 94  CVRDANGAYSSYISLYNVTNLPS 116

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A Length = 140

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 146 LTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           ++    D+  L ++ D  VL+           +      ++   F  +    VA  D ++
Sbjct: 22  VSESRLDD-WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP-DYTWQVAIADLEQ 79

Query: 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 247
            + + +++G   FP    F      G   G   G     + ++ +  
Sbjct: 80  SEAIGDRFGAFRFPATLVF----TGGNYRGVLNGIHPWAELINLMRG 122

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} Length = 147

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 44/142 (30%)

Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKV--------------------- 184
           ++ D   + V    K  +  F  P C  CK L   +EK+                     
Sbjct: 1   MSLDKAIKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKMTDVTVYSFMMPIAGLHPDAAR 60

Query: 185 ----------------AAAFTLEDDVVVANLDA--DKYKDLAEKYGVSGFPTLKFFPKGN 226
                                 +  V  +  D    +   L E++G +G PTL  FP   
Sbjct: 61  KAQILWCQPDRAKAWTDWMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTL-VFP--- 116

Query: 227 KDGEEYGGGRDLEDFVSFINEK 248
            +G    G   +      I + 
Sbjct: 117 -NGRTQSGYSPMPQLEEIIRKN 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	100.0
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	100.0
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	100.0
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	100.0
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.98
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.97
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.97
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.96
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.95
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.94
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.92
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.89
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.89
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.88
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.87
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.86
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.85
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.85
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.85
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.84
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.83
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.83
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.82
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.82
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.82
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.82
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.82
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.82
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.82
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.82
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.82
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.82
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.81
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.81
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.81
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.81
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.81
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.81
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.81
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.81
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.81
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.81
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.81
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.81
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.8
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.8
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.8
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.8
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.8
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.8
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.8
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.8
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.8
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.8
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.8
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.8
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.8
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.8
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.8
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.8
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.8
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.8
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.79
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.79
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.79
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.79
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.79
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.79
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.79
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.79
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.79
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.79
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.79
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.79
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.79
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.79
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.79
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.79
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.79
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.79
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.79
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.79
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.79
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.79
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.79
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.78
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.78
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.78
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.78
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.78
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.78
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.78
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.78
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.78
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.77
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.77
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.77
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.77
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.77
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.77
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.77
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.77
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.77
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.77
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.77
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.76
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.76
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.76
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.76
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.76
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.76
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.76
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.76
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.76
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.76
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.76
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.76
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.76
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.76
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.75
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.75
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.75
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.75
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.75
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.75
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.75
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.75
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.75
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.75
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.75
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.75
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.75
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.75
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.75
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.75
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.75
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.75
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.74
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.74
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.74
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.74
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.74
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.74
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.74
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.74
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.73
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.73
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.73
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.73
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.73
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.73
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.73
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.73
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.73
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.73
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.73
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.72
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.72
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.72
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.72
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.72
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.71
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.71
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.71
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.7
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.7
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.7
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.7
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.7
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.7
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.69
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.69
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.69
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.69
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.68
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.68
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.68
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.67
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.5
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.49
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.66
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.66
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.66
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.65
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.65
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.65
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.65
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.65
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.64
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.64
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.63
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.63
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.63
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.62
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.61
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.61
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.61
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.61
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.61
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.61
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.6
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.6
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.6
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.58
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.58
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.58
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.58
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.34
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.56
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.56
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.32
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.54
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.53
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.53
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.53
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.53
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.52
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.52
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.51
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.5
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.5
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.49
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.49
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.49
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.49
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.48
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.48
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.47
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.47
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.46
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.46
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.46
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.46
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.46
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.46
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.46
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.45
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.45
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.45
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.44
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.44
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.44
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.44
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.44
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.42
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.41
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.41
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.41
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.4
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.4
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.4
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.39
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.39
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.39
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.38
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.38
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.38
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.38
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.37
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.37
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.37
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.37
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.36
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.36
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.36
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.35
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.34
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.33
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.33
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.32
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.32
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.32
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.32
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.31
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.31
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.31
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.31
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.31
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.31
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.3
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.3
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.3
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.3
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.3
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.3
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.29
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.29
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.29
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.28
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.28
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.27
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.27
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.26
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.25
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.25
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.24
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.24
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.24
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.24
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.24
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.23
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.22
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.21
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.2
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.2
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.19
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.19
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.18
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.18
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.17
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.17
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.17
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.13
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.12
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.72
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.71
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.11
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.11
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.67
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.07
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.07
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.07
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.07
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.06
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.06
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.06
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.04
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.6
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.03
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.03
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.03
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.02
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.02
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.02
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.01
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.01
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.99
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.99
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.98
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.98
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.97
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.97
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.96
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.95
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.95
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.94
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.94
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.94
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.94
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.93
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.92
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.92
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.92
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.91
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.91
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.88
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.88
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.87
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.86
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.85
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.85
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.84
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.83
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.83
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.83
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.82
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.81
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.81
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.79
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.78
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.78
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.78
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.78
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.78
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.78
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.78
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.77
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.77
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.75
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.75
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.75
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.74
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.74
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.73
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.73
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.71
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.71
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.7
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.7
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.68
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.66
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.66
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.65
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.63
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.59
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.57
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.54
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.52
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.52
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.52
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.51
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.51
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.51
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.49
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.49
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.48
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.46
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.45
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.45
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.45
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.44
3me7_A	170	Putative uncharacterized protein; electron transfe	98.44
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.44
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.43
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.43
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.41
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.41
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.41
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.4
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.39
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.39
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.39
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.38
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.37
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.36
3me7_A	170	Putative uncharacterized protein; electron transfe	98.36
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.35
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.35
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.35
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.33
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.33
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.31
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.3
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.29
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.27
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.27
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.27
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.26
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.25
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.25
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.24
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.24
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.23
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.2
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.2
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.19
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.18
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.18
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.16
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.15
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.14
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	98.13
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.12
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.12
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.11
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.1
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.1
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.09
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.08
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.08
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.08
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.06
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.06
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.06
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.04
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.03
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.03
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.03
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.03
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	98.02
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.02
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.0
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.98
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.98
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.98
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.98
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.97
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.97
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.97
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.96
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.96
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.95
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.95
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.95
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.92
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	97.92
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.91
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	97.91
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.9
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.89
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	97.88
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.87
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	97.87

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=100.00  E-value=7.4e-41  Score=287.84  Aligned_cols=207  Identities=20%  Similarity=0.386  Sum_probs=188.4

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEc--CCCCcccchhhhhHHHHHHHhcC-CCCeEEEEEeCcc-----cHHHHHh
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFY--APWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADK-----YKDLAEK  210 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~--a~~C~~c~~~~~~~~~la~~~~~-~~~v~~~~vd~~~-----~~~l~~~  210 (358)
                      .+..+..++..+|++++ +.+++|+|.||  ||||+    +.|.|+++|+.+.. .+++.|++|||++     ++++|++
T Consensus        14 ~~~~v~~Lt~~nF~~vi-~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~   88 (248)
T 2c0g_A           14 TCTGCVDLDELSFEKTV-ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDR   88 (248)
T ss_dssp             -CTTCEECCTTTHHHHH-TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHH
T ss_pred             CCCCcEECCHHHHHHHH-hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHH
Confidence            56678999999999976 77889999999  99998    99999999999965 5689999999998     8999999


Q ss_pred             cCCC--cccEEEEEeCCC-cceeee--cCCCCHHHHHHHHHHhcCCCCCCCCCccccccchhhHHHHHHHHHhcchhhHH
Q 018270          211 YGVS--GFPTLKFFPKGN-KDGEEY--GGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKK  285 (358)
Q Consensus       211 ~~v~--~~Pti~~~~~g~-~~~~~~--~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  285 (358)
                      |+|+  ++||+++|+ |. ..+..|  .|.++.++|.+||+++++..       .+.+|++..++.++..|+..+++.+.
T Consensus        89 ~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~-------~~~~g~i~~~d~l~~~f~~~~~~~~~  160 (248)
T 2c0g_A           89 YKVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLY-------IGRDGCIKEFNEVLKNYANIPDAEQL  160 (248)
T ss_dssp             TTCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCC-------CCCTTCCHHHHHHHTTGGGSCHHHHH
T ss_pred             hCCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhccc-------cCCCCchHHHHHHHHHHhcccchhHH
Confidence            9999  999999999 76 357888  99999999999999998733       35789999999999999998888889


Q ss_pred             HHHHHHHHHHhhhhcc-hhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhccCChhhhhhhHHhhhhhcccC
Q 018270          286 AVFSKIERGVEVLEGS-TARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT  358 (358)
Q Consensus       286 ~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~~~~~~~~~~~nil~~f~  358 (358)
                      +++++++++++.+.+. +.++++||+++|+||+++|++|+++|++||++||+++++++|+|+|++|+|||++|.
T Consensus       161 ~~~~~~~~~~~~l~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E~~Rl~~~l~~~~~~~k~d~~~~r~NIL~~F~  234 (248)
T 2c0g_A          161 KLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFR  234 (248)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999988654 368999999999999999999999999999999988999999999999999999995

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=100.00  E-value=2.8e-40  Score=287.38  Aligned_cols=224  Identities=42%  Similarity=0.815  Sum_probs=200.2

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      .+.+..+++++|++.+.++++++|+||++||++|+.+.|.|.++++.+++. ..+.++.||+++++++|++|+|.++||+
T Consensus        14 ~~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   93 (241)
T 3idv_A           14 ENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI   93 (241)
T ss_dssp             ETTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEE
Confidence            457999999999999999999999999999999999999999999999743 2499999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhh
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPT  180 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~  180 (358)
                      ++|++|+.  ..|.|.++.+++.+|+.+......  ...+..+..++.++|++.+ ..+++++|.||++||++|+.+.|.
T Consensus        94 ~~~~~g~~--~~~~g~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~  168 (241)
T 3idv_A           94 KILKKGQA--VDYEGSRTQEEIVAKVREVSQPDW--TPPPEVTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPE  168 (241)
T ss_dssp             EEEETTEE--EECCSCSCHHHHHHHHHHHHSTTC--CCCCCSSEECCTTTHHHHH-HHCSEEEEEEECTTCTGGGGTHHH
T ss_pred             EEEcCCCc--ccccCcccHHHHHHHHhhccCccc--ccccccceeccHHHHHHhh-ccCCeEEEEEECCCCHHHHHhHHH
Confidence            99987653  479999999999999998765433  2356678899999999988 667899999999999999999999


Q ss_pred             HHHHHHHhcC-CCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          181 YEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       181 ~~~la~~~~~-~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      |.++++.+.. ..++.++.+|++.+.+++++|+|.++||+++|++|+  .+.|.|.++.++|.+||++++++.
T Consensus       169 ~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~--~~~~~g~~~~~~l~~~l~~~~~~~  239 (241)
T 3idv_A          169 YEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGR--PYDYNGPREKYGIVDYMIEQSGAA  239 (241)
T ss_dssp             HHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTE--EEECCSCCSHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCe--EEEecCCCCHHHHHHHHHhhhCCC
Confidence            9999999864 246999999999999999999999999999999873  456999999999999999988754

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=100.00  E-value=9.8e-40  Score=280.07  Aligned_cols=206  Identities=24%  Similarity=0.477  Sum_probs=184.8

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcC--CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----ccHHHHHhcC
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYA--PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----KYKDLAEKYG  212 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a--~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----~~~~l~~~~~  212 (358)
                      .+.+..++..+|++++ ..+++++|.|||  |||+    +.|.|+++|..+...+++.|+.||++     .++++|++|+
T Consensus         4 ~~~v~~Lt~~nF~~~i-~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~   78 (240)
T 2qc7_A            4 TKGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK   78 (240)
T ss_dssp             CTTCEECCTTHHHHHG-GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTT
T ss_pred             CCCceECCHHHHHHHH-cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcC
Confidence            4568899999999977 677899999999  9999    99999999999976668999999954     5899999999


Q ss_pred             CC--cccEEEEEeCCC-cceeeecCCCCHHHHHHHHHHhcCCCCCCCCCccccccchhhHHHHHHHHHhcch-hhHHHHH
Q 018270          213 VS--GFPTLKFFPKGN-KDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASG-DEKKAVF  288 (358)
Q Consensus       213 v~--~~Pti~~~~~g~-~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~  288 (358)
                      |+  ++||+++|++|. ..+..|.|.++.+.|.+||++++        .+.+.+|++..++.++..|+.+++ +.+.+++
T Consensus        79 V~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~--------~~~~~~g~i~~~d~l~~~f~~~~~~~~~~~~~  150 (240)
T 2qc7_A           79 LDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG--------VYLGMPGCLPVYDALAGEFIRASGVEARQALL  150 (240)
T ss_dssp             CCGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT--------CCCCCTTCCHHHHHHHHHHHHSCSHHHHHHHT
T ss_pred             CCCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc--------cccCCCCchHHHHHHHHHHHhccchhHHHHHH
Confidence            99  999999999987 46789999999999999999876        345578999999999999998874 6688999


Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHh-ccCChhhhhhhHHhhhhhcccC
Q 018270          289 SKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLD-KSISAAKADEFVLKKNILSTFT  358 (358)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~-~~~~~~~~~~~~~~~nil~~f~  358 (358)
                      ++++++++.+.+.+.++++||+++|+||+++|++|+++|++||++||+ ++++++|+|+|+.|+|||++|+
T Consensus       151 ~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E~~Rl~~~l~~~~~~~~k~d~~~~r~NIL~~F~  221 (240)
T 2qc7_A          151 KQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAFQ  221 (240)
T ss_dssp             THHHHHTTCSCHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHhhcchhhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999988877554456899999999999999999999999999999996 7999999999999999999995

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=100.00  E-value=8.4e-35  Score=267.93  Aligned_cols=226  Identities=27%  Similarity=0.528  Sum_probs=194.1

Q ss_pred             ccCCCeEEcChhhHHHHhcC-CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccC
Q 018270           20 ALADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQG   96 (358)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~~~-~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~   96 (358)
                      .....+.++|.+++...... .++++|.||++||++|+++.|.|.++++.++  +.+.|+.+||+  +.+.+|+.|||.+
T Consensus       114 ~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~--~~i~f~~vd~~~~~~~~~~~~fgi~~  191 (361)
T 3uem_A          114 NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK--GKILFIFIDSDHTDNQRILEFFGLKK  191 (361)
T ss_dssp             HSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGT--TTCEEEEECTTSGGGHHHHHHTTCCT
T ss_pred             cCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHcc--CceEEEEecCChHHHHHHHHHcCCCc
Confidence            34567899999999998854 4567999999999999999999999999998  56999999999  6899999999998


Q ss_pred             --CCeEEEccCCCCCccccc---CCCCHHHHHHHHhccCCCCcc----ccC-----CCCCceEcCcccHHHHHhcCCCcE
Q 018270           97 --YPTIQWFPKGSLEPKKYE---GPRSTEALAEYVNNEGGTNVK----IAA-----VPSNVVVLTADNFDEIVLDKSKDV  162 (358)
Q Consensus        97 --~P~l~~~~~~~~~~~~~~---g~~~~~~i~~~i~~~~~~~~~----~~~-----~~~~v~~l~~~~f~~~~~~~~~~v  162 (358)
                        +|++++|..++.. ..|.   |.++.++|.+|+.+....+..    ...     ....+..+++++|+..+.+.++++
T Consensus       192 ~~~P~~~~~~~~~~~-~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~  270 (361)
T 3uem_A          192 EECPAVRLITLEEEM-TKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNV  270 (361)
T ss_dssp             TTCSEEEEEECC--C-CEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEE
T ss_pred             cCCccEEEEEcCCcc-cccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcE
Confidence              9999999875532 5564   789999999999986543322    112     234589999999999997789999


Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC-CcceeeecCCCCHHHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG-NKDGEEYGGGRDLEDF  241 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g-~~~~~~~~g~~~~~~l  241 (358)
                      +|.||||||++|+.+.|.|+++++.++...++.++.+|++.+.  +++|+|.++||+++|++| +..+.+|.|.++.++|
T Consensus       271 lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l  348 (361)
T 3uem_A          271 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGF  348 (361)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSSSCCCEECCSCSSHHHH
T ss_pred             EEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCCCcceeEecCCCCHHHH
Confidence            9999999999999999999999999987668999999999877  789999999999999776 4578899999999999


Q ss_pred             HHHHHHhcC
Q 018270          242 VSFINEKCG  250 (358)
Q Consensus       242 ~~~i~~~~~  250 (358)
                      .+||+++.+
T Consensus       349 ~~~l~~~~~  357 (361)
T 3uem_A          349 KKFLESGGQ  357 (361)
T ss_dssp             HHHHTTTSC
T ss_pred             HHHHHhcCC
Confidence            999987644

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=1.9e-34  Score=276.98  Aligned_cols=228  Identities=37%  Similarity=0.771  Sum_probs=192.9

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      ..+.+..+|+++|++.++++++++|+|||+||+||+.+.|.|+++++.+++. .+.++.|||++++++|++|+|.++||+
T Consensus        12 ~~~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~   90 (504)
T 2b5e_A           12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITLAQIDCTENQDLCMEHNIPGFPSL   90 (504)
T ss_dssp             TTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHhcCCCcCCEE
Confidence            3567999999999999998999999999999999999999999999999742 599999999999999999999999999


Q ss_pred             EEccCCCCC-cccccCCCCHHHHHHHHhccCCCC----------------------------------------------
Q 018270          101 QWFPKGSLE-PKKYEGPRSTEALAEYVNNEGGTN----------------------------------------------  133 (358)
Q Consensus       101 ~~~~~~~~~-~~~~~g~~~~~~i~~~i~~~~~~~----------------------------------------------  133 (358)
                      ++|.+|... +..|.|.++.+.|.+|+.+..++.                                              
T Consensus        91 ~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~f~~~A~~~~~~~  170 (504)
T 2b5e_A           91 KIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDY  170 (504)
T ss_dssp             EEEETTCTTCEEECCSCCSHHHHHHHHHHHTSCSEEECSCHHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTTC
T ss_pred             EEEeCCccccceeecCCCCHHHHHHHHHHhcCCcceeHHHHHHHHhcCCCceEEEEEeCCCCchHHHHHHHHHHHhhcCc
Confidence            999887642 578999999999988876432110                                              


Q ss_pred             --------------------------------c-----------------------------------------------
Q 018270          134 --------------------------------V-----------------------------------------------  134 (358)
Q Consensus       134 --------------------------------~-----------------------------------------------  134 (358)
                                                      .                                               
T Consensus       171 ~F~~~~~~~~~~~~~i~l~~~~~~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~~~~~~~~~~l~~~~~~  250 (504)
T 2b5e_A          171 DFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEE  250 (504)
T ss_dssp             EEEEEECTTSCCEEEEEETTEEEEEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHHHHTTSCEEEEEESSHH
T ss_pred             EEEEEHHHHHhcCCeEEecCCCCcccccCCcccccCCHHHHHHHHHhcccCCcccCCHhHHHHHhcCCCcEEEEEecCcc
Confidence                                            0                                               


Q ss_pred             -------------------------------------------------------c--cc--------------------
Q 018270          135 -------------------------------------------------------K--IA--------------------  137 (358)
Q Consensus       135 -------------------------------------------------------~--~~--------------------  137 (358)
                                                                             .  ..                    
T Consensus       251 ~~~~~~~~l~~~a~~~~~~i~F~~id~~~~~~~~~~~gl~~~~P~v~i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~  330 (504)
T 2b5e_A          251 ELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKA  330 (504)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHH
T ss_pred             cHHHHHHHHHHHHHhcCCeeEEEEEehhhhHHHHHHcCCcccCCEEEEEeCCcCcccCCCCCccchhhccccccccCHHH
Confidence                                                                   0  00                    


Q ss_pred             --------------------CCC----CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhc-CCC
Q 018270          138 --------------------AVP----SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LED  192 (358)
Q Consensus       138 --------------------~~~----~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~-~~~  192 (358)
                                          ..|    ..+..+++.+|+..+.+.+++++|.||||||+||+.+.|.|+++++.+. ...
T Consensus       331 l~~f~~~~~~g~~~p~~~s~~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~  410 (504)
T 2b5e_A          331 IESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATS  410 (504)
T ss_dssp             HHHHHHHHHHTCCCCCCCCCCCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCCChhhhcCCCCccccccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCC
Confidence                                001    3467788999999987788999999999999999999999999999986 445


Q ss_pred             CeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcCC
Q 018270          193 DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       193 ~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      ++.++.+|++.+... . |+|.++||+++|++|+. .+..|.|.++.++|.+||+++...
T Consensus       411 ~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~~  468 (504)
T 2b5e_A          411 DVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHF  468 (504)
T ss_dssp             SCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTT
T ss_pred             cEEEEEecCCccccc-c-CCceecCeEEEEeCCceecceEecCCCCHHHHHHHHHhcCCC
Confidence            899999999977644 4 99999999999987754 378899999999999999987553

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=100.00  E-value=1.1e-34  Score=249.72  Aligned_cols=208  Identities=19%  Similarity=0.287  Sum_probs=174.5

Q ss_pred             hhhHHHHh---cCCCcEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEEEc
Q 018270           30 EDNFEKEV---GQDRGALVEFYAP-WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        30 ~~~f~~~~---~~~~~~lv~fya~-~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~  103 (358)
                      .+++.+.+   .++..++|+||++ ||++|+.+.|.|+++++. .  +.+.++.+||++  ++++|++|+|.++||+++|
T Consensus         9 ~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~--~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   85 (226)
T 1a8l_A            9 KKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T--DKLSYEIVDFDTPEGKELAKRYRIDRAPATTIT   85 (226)
T ss_dssp             HHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C--TTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C--CceEEEEEeCCCcccHHHHHHcCCCcCceEEEE
Confidence            35566666   2345678999999 999999999999999865 2  679999999999  9999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcE-EEEEcCCCCcccchhhhhHH
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDV-LVEFYAPWCGHCKNLAPTYE  182 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v-~v~f~a~~C~~c~~~~~~~~  182 (358)
                      .+|.....+|.|.++.+++.+|+.......       .....++.++|+.+. ..++++ +|.||++||++|+.+.|.|.
T Consensus        86 ~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~-------~~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~p~~~  157 (226)
T 1a8l_A           86 QDGKDFGVRYFGLPAGHEFAAFLEDIVDVS-------REETNLMDETKQAIR-NIDQDVRILVFVTPTCPYCPLAVRMAH  157 (226)
T ss_dssp             ETTBCCSEEEESCCCTTHHHHHHHHHHHHH-------HTCCCCCHHHHHHHT-TCCSCEEEEEEECSSCTTHHHHHHHHH
T ss_pred             cCCceeeEEEeccCcHHHHHHHHHHHHhhc-------CCCCCCCHHHHHHHH-hcCCCcEEEEEeCCCCCccHHHHHHHH
Confidence            877654578999999999999988753211       113457888888876 455566 99999999999999999999


Q ss_pred             HHHHHhcC--CCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          183 KVAAAFTL--EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       183 ~la~~~~~--~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++++.+..  .+++.++.+|++.+.+++++|+|.++||+++|++|. ....+.|..+.++|.+||++.+
T Consensus       158 ~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          158 KFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGE-DRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCc-eeEEEcCCCCHHHHHHHHHHhh
Confidence            99999852  257999999999999999999999999999998764 5678999999999999998764

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=3.5e-34  Score=273.66  Aligned_cols=228  Identities=43%  Similarity=0.871  Sum_probs=198.9

Q ss_pred             CCeEEcChhhHHHHhcCC---CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           23 DDVVVLTEDNFEKEVGQD---RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~---~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      +.|..+|+++|++.+.++   ++++|+|||+||+||+.+.|.|+++++.++  +.+.++.|||++++++|++|+|.++||
T Consensus         1 s~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt   78 (481)
T 3f8u_A            1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK--GIVPLAKVDCTANTNTCNKYGVSGYPT   78 (481)
T ss_dssp             CCCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCCEEEEETTTCHHHHHHTTCCEESE
T ss_pred             CceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhc--CceEEEEEECCCCHHHHHhcCCCCCCE
Confidence            357899999999999777   999999999999999999999999999997  449999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccCCCCcccc------------------------------------------
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIA------------------------------------------  137 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~------------------------------------------  137 (358)
                      +++|++|. .+.+|.|.++.+.|.+|+.+..++.....                                          
T Consensus        79 l~~~~~g~-~~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~f~~~a~~~~~~  157 (481)
T 3f8u_A           79 LKIFRDGE-EAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDN  157 (481)
T ss_dssp             EEEEETTE-EEEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred             EEEEeCCc-eeeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCCccchHHHHHHHHHHhccC
Confidence            99998775 34789999999999999987665542100                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 018270          138 --------------------------------------------------------------------------------  137 (358)
Q Consensus       138 --------------------------------------------------------------------------------  137 (358)
                                                                                                      
T Consensus       158 ~~F~~~~~~~~~~~~~v~~~~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~~n~~~~~~~~~~  237 (481)
T 3f8u_A          158 YRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLL  237 (481)
T ss_dssp             SCEEEECCHHHHHHHCSSSEEEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECTTTHHHHTTSSEE
T ss_pred             ceEEEECCHHHHHHhCCCCCcEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCCccccChhHHHHhcCCCce
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 018270          138 --------------------------------------------------------------------------------  137 (358)
Q Consensus       138 --------------------------------------------------------------------------------  137 (358)
                                                                                                      
T Consensus       238 v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~~~l~~~gl~~~~~~~P~~~i~~~~~~ky~~~~~  317 (481)
T 3f8u_A          238 IAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEE  317 (481)
T ss_dssp             EEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCTTCSCEEEEECSSSCEEECCSC
T ss_pred             EEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHHHcCCCcccCCCcEEEEEcCCCcccCCCcc
Confidence                                                                                            


Q ss_pred             -------------------------------CCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHH
Q 018270          138 -------------------------------AVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAA  186 (358)
Q Consensus       138 -------------------------------~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~  186 (358)
                                                     .....+..+++.+|++.+.+.+++++|.|||+||++|+.+.|.|.++++
T Consensus       318 ~t~e~~~l~~f~~~~~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~  397 (481)
T 3f8u_A          318 FSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGE  397 (481)
T ss_dssp             CCTTSHHHHHHHHHHHHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHHhcCCcccccccCCCCCCCCCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHH
Confidence                                           0012466778888999886778999999999999999999999999999


Q ss_pred             HhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          187 AFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       187 ~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      .+....++.++.+|++.+ +++.+|+|.++||+++|++|++ .+..|.|.++.++|.+||+++......
T Consensus       398 ~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~  465 (481)
T 3f8u_A          398 KLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPV  465 (481)
T ss_dssp             HTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHCSSCCC
T ss_pred             HhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhcCCccc
Confidence            998666899999999988 7889999999999999999876 488999999999999999998765443

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=100.00  E-value=7.1e-34  Score=245.11  Aligned_cols=204  Identities=18%  Similarity=0.219  Sum_probs=171.9

Q ss_pred             hhHHHHh--cCCCcEEEEEE-----CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           31 DNFEKEV--GQDRGALVEFY-----APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        31 ~~f~~~~--~~~~~~lv~fy-----a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      +.+.+.+  +..++++|.||     ++||+||+.+.|.|.++++.+.+.+.+.++.|||++++++|++|+|+++||+++|
T Consensus         9 ~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~   88 (229)
T 2ywm_A            9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE   88 (229)
T ss_dssp             HHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE
Confidence            4555656  45567777776     8999999999999999998885446799999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcE-EEEEcCCCCcccchhhhhHH
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDV-LVEFYAPWCGHCKNLAPTYE  182 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v-~v~f~a~~C~~c~~~~~~~~  182 (358)
                      ++ +..+.+|.|.++.+++..|+......       ...+..++..+|+.+. ..++++ ++.||++||++|+.+.|.++
T Consensus        89 ~~-~~~~~~~~G~~~~~~l~~~~~~~~~~-------~~~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~~~~~  159 (229)
T 2ywm_A           89 GD-KDYGIRYIGLPAGLEFTTLINGIFHV-------SQRKPQLSEKTLELLQ-VVDIPIEIWVFVTTSCGYCPSAAVMAW  159 (229)
T ss_dssp             SS-SCCCEEEESCCCTTHHHHHHHHHHHH-------HTTCCSCCHHHHHHHT-TCCSCEEEEEEECTTCTTHHHHHHHHH
T ss_pred             CC-CcccceecCCccHHHHHHHHHHHHhc-------cCCccCCCHHHHHHHH-hcCCCeEEEEEECCCCcchHHHHHHHH
Confidence            75 44558999999999999999875421       1224568889999887 445555 88999999999999999999


Q ss_pred             HHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          183 KVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       183 ~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +++..+   +++.++.+|++.+++++++|+|.++||+++  +|.  ..+|.|.++.++|.+||++.++
T Consensus       160 ~~~~~~---~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~--~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          160 DFALAN---DYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG--VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             HHHHHC---TTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG--TEEEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHC---CCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE--EEEeeCCCCHHHHHHHHHHHhh
Confidence            999987   479999999999999999999999999998  553  5669999999999999987643

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=9.3e-33  Score=278.51  Aligned_cols=215  Identities=30%  Similarity=0.577  Sum_probs=191.1

Q ss_pred             CCeEEcChhhHHHHhcC---CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           23 DDVVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~---~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ..+..++.++|++++..   +.+++|.||+|||+||+++.|.|+++++.++  +.+.|+.+||+.+..+|++|+|+++|+
T Consensus       543 ~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt  620 (780)
T 3apo_A          543 PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT--GLINVGSVDCGQYHSFCTQENVQRYPE  620 (780)
T ss_dssp             CSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTSEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred             cceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh--CCeEEEEEECcchHHHHHHcCCCCCCe
Confidence            67899999999998843   5779999999999999999999999999998  579999999999999999999999999


Q ss_pred             EEEccCCCC---CcccccC-CCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccc
Q 018270          100 IQWFPKGSL---EPKKYEG-PRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCK  175 (358)
Q Consensus       100 l~~~~~~~~---~~~~~~g-~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~  175 (358)
                      +++|..+..   .+..|.| .++.++|.+|+....         +..+.+++..+|++.+...+++++|.||++||++|+
T Consensus       621 i~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~---------~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~  691 (780)
T 3apo_A          621 IRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL---------PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQ  691 (780)
T ss_dssp             EEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTS---------CCCSEEECHHHHHHHTTTCSSCEEEEEECTTCHHHH
T ss_pred             EEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhc---------ccccccCCHHHHHHHHhcCCCeEEEEEECCCCHHHH
Confidence            999988754   3467899 899999999999874         345788999999887767889999999999999999


Q ss_pred             hhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHhcCC
Q 018270          176 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKCGT  251 (358)
Q Consensus       176 ~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~~~~  251 (358)
                      .+.|.|+++++.+.  +++.++.+|+++++.++++|+|.++||+++|++|+. ..++.|    .++.++|.+||.+.+..
T Consensus       692 ~~~p~~~~la~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~G~~~g~~~~~~l~~~l~~~l~~  768 (780)
T 3apo_A          692 NFAPEFELLARMIK--GKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERA-KKSIWEEQINSRDAKTIAALIYGKLET  768 (780)
T ss_dssp             HHHHHHHHHHHHHT--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETT-TTEEEEEEECCCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc--CCceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCc-cccccCcccCCcCHHHHHHHHHHHHHH
Confidence            99999999999995  479999999999999999999999999999987753 333444    68999999999998753

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=8.9e-33  Score=278.62  Aligned_cols=213  Identities=29%  Similarity=0.583  Sum_probs=191.5

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      ..+.+..+|.++|.+.  .+++++|.||++||++|+.+.|.|.++++.++  +++.|+.|||+++..+|+.|||.++|++
T Consensus       438 ~~~~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~Pt~  513 (780)
T 3apo_A          438 VNSHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLY--GQLKVGTLDCTIHEGLCNMYNIQAYPTT  513 (780)
T ss_dssp             HTSCEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cCCCCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCeEEEEEeCCCCHHHHHHcCCCcCCeE
Confidence            3467899999999877  78999999999999999999999999999997  5699999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcC--CCcEEEEEcCCCCcccchhh
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLA  178 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~  178 (358)
                      ++|+.|. . ..|.|.++.++|.+|+.+...         ..+..++.++|++++...  +..++|.||+|||++|+.+.
T Consensus       514 ~~~~~g~-~-~~~~g~~~~~~l~~fi~~~~~---------~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~  582 (780)
T 3apo_A          514 VVFNQSS-I-HEYEGHHSAEQILEFIEDLRN---------PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLM  582 (780)
T ss_dssp             EEEETTE-E-EEECSCSCHHHHHHHHHHHHS---------CSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHH
T ss_pred             EEEcCCc-e-eeecCcccHHHHHHHHHhhcc---------cceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhh
Confidence            9997653 3 788999999999999998764         347889999999998543  46789999999999999999


Q ss_pred             hhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc---ceeeecC-CCCHHHHHHHHHHhcC
Q 018270          179 PTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK---DGEEYGG-GRDLEDFVSFINEKCG  250 (358)
Q Consensus       179 ~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~---~~~~~~g-~~~~~~l~~~i~~~~~  250 (358)
                      |.|+++|+.++  +++.|+.+|++.+..+|++|+|+++||+++|+.|+.   .+..|.| .++.++|.+||.+.+.
T Consensus       583 p~~~~lA~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~  656 (780)
T 3apo_A          583 PEWKRMARTLT--GLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP  656 (780)
T ss_dssp             HHHHHHHHHHT--TTSEEEEEETTTTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhh--CCeEEEEEECcchHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcc
Confidence            99999999996  479999999999999999999999999999998754   4678999 8999999999998764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.98  E-value=2.9e-31  Score=230.04  Aligned_cols=215  Identities=15%  Similarity=0.202  Sum_probs=172.6

Q ss_pred             hhHHHHh-cCCCcEEEEEECCC--ChhhhhhhHHHHHHHHHhhc-CCc--eEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           31 DNFEKEV-GQDRGALVEFYAPW--CGHCKKLAPEYEKLGASFKK-AKS--VLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        31 ~~f~~~~-~~~~~~lv~fya~~--c~~C~~~~~~~~~~~~~~~~-~~~--v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      +++.+.+ +-.++++|.||++|  |++|+.+.|.++++++.... .++  |.|+.+|+++++++|++|||.++||+++| 
T Consensus        15 ~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-   93 (243)
T 2hls_A           15 RELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-   93 (243)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-
Confidence            4566666 34579999999999  99999999999999987421 122  99999999999999999999999999999 


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHH
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKV  184 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~l  184 (358)
                      +|   ..+|.|.++...+..|+........    .   ...++..+++.+....++.+++.||+|||++|+.+.|.|+++
T Consensus        94 ~g---~~~~~G~~~~~~l~~fv~~~l~~~~----~---~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~l  163 (243)
T 2hls_A           94 GG---EVRWTGIPAGEEIRALVEVIMRLSE----D---ESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMF  163 (243)
T ss_dssp             TT---TEEEESCCCTTHHHHHHHHHHHHHT----T---CCCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CC---ceeEcCCCcHHHHHHHHHHHHhccC----C---CCCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHH
Confidence            44   4789998888889888876432110    0   112455666665433566779999999999999999999999


Q ss_pred             HHHhc--CCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCCCCCccc
Q 018270          185 AAAFT--LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTS  261 (358)
Q Consensus       185 a~~~~--~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~  261 (358)
                      +..+.  .++++.++.+|++.+++++++|+|.++||+++  +| +  ..|.|.++.++|.+||.+.++..+...|.+..
T Consensus       164 a~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G-~--~~~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~  237 (243)
T 2hls_A          164 AYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NG-Y--LVFVGVPYEEDFLDYVKSAAEGRLTVKGPIRA  237 (243)
T ss_dssp             HHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TT-E--EEEESCCCHHHHHHHHHHHHTTCCCCCC----
T ss_pred             HHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CC-E--EEEeCCCCHHHHHHHHHHHhhcccccCCCcCc
Confidence            99883  23579999999999999999999999999988  55 3  34899999999999999999998888777654

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.97  E-value=1.4e-30  Score=239.60  Aligned_cols=210  Identities=14%  Similarity=0.171  Sum_probs=177.1

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhh------HHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCc
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLA------PEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGV   94 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~------~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i   94 (358)
                      ..+.|..||.++|++.++++++++|+||||||+||....      |.|+++++.+++ ..+.+++|||++++++|++|+|
T Consensus        11 ~~~~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~-~~v~~~~Vd~~~~~~l~~~~~V   89 (367)
T 3us3_A           11 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLVDSEKDAAVAKKLGL   89 (367)
T ss_dssp             CCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTT-TTEEEEEEETTTTHHHHHHHTC
T ss_pred             CCCccEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhc-CCceEEEEeCcccHHHHHHcCC
Confidence            346799999999999998899999999999999974333      689999999873 3699999999999999999999


Q ss_pred             cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcC-cccHHHHHhcCCCcEEEEEcCCCCcc
Q 018270           95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLT-ADNFDEIVLDKSKDVLVEFYAPWCGH  173 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~-~~~f~~~~~~~~~~v~v~f~a~~C~~  173 (358)
                      .++||+++|++|.  +..|.|.++.+.|.+|+.+..++         .+..++ ..++++++......++|.|+++||. 
T Consensus        90 ~~~PTl~~f~~G~--~~~y~G~~~~~~i~~~i~~~~~~---------~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~-  157 (367)
T 3us3_A           90 TEEDSIYVFKEDE--VIEYDGEFSADTLVEFLLDVLED---------PVELIEGERELQAFENIEDEIKLIGYFKNKDS-  157 (367)
T ss_dssp             CSTTEEEEEETTE--EEECCSCCSHHHHHHHHHHHHSC---------SEEECCSHHHHHHHHHCCSSCEEEEECSCTTC-
T ss_pred             CcCceEEEEECCc--EEEeCCCCCHHHHHHHHHHhcCC---------CcEEcCCHHHHHHHhccCCCcEEEEEECCCCc-
Confidence            9999999999764  36999999999999999988653         245664 5889988842568899999999755 


Q ss_pred             cchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC-CCHHHHHHHHHHhcCC
Q 018270          174 CKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFVSFINEKCGT  251 (358)
Q Consensus       174 c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~~~i~~~~~~  251 (358)
                        ...+.|.++|..+.  +++.|+.+.   +.+++++|+++. |++++|+++...+..|.|. ++.++|.+||+.+.-+
T Consensus       158 --~~~~~f~~~A~~~~--~~~~F~~~~---~~~~~~~~~v~~-p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p  228 (367)
T 3us3_A          158 --EHYKAFKEAAEEFH--PYIPFFATF---DSKVAKKLTLKL-NEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRS  228 (367)
T ss_dssp             --HHHHHHHHHHHHHT--TTSCEEEEC---CHHHHHHHTCCT-TCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSC
T ss_pred             --hHHHHHHHHHHhhc--CCcEEEEEC---CHHHHHHcCCCC-CeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCcc
Confidence              56789999999996  457777754   467899999985 9999999876678899995 9999999999987644

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.97  E-value=2.6e-29  Score=230.08  Aligned_cols=210  Identities=15%  Similarity=0.175  Sum_probs=179.3

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHH-------HHHHHHHhhcCCceEEEEEeCccchhhHhhcC
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPE-------YEKLGASFKKAKSVLIGKVDCDEHKSLCSKYG   93 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~-------~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~   93 (358)
                      ..+.|..+|.++|++.++++++++|+|||+||+ |+.+.|.       |+++++.+++. .+.++.|||++++++|++|+
T Consensus         9 ~~~~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~-~v~~~~Vd~~~~~~l~~~~~   86 (350)
T 1sji_A            9 GKDRVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK-DIGFVMVDAKKEAKLAKKLG   86 (350)
T ss_dssp             CCCCCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS-SEEEEEEETTTTHHHHHHHT
T ss_pred             CCCccEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc-CcEEEEEeCCCCHHHHHhcC
Confidence            345689999999999998899999999999999 9999999       99999998743 69999999999999999999


Q ss_pred             ccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcC-cccHHHHHhcCCCcEEEEEcCCCCc
Q 018270           94 VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLT-ADNFDEIVLDKSKDVLVEFYAPWCG  172 (358)
Q Consensus        94 i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~-~~~f~~~~~~~~~~v~v~f~a~~C~  172 (358)
                      |.++||+++|++|.  +..|.|.++.+.|.+|+.+..++.         +..++ .+++++++......++|.|+++||.
T Consensus        87 v~~~Pt~~~~~~g~--~~~~~G~~~~~~l~~~i~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~  155 (350)
T 1sji_A           87 FDEEGSLYVLKGDR--TIEFDGEFAADVLVEFLLDLIEDP---------VEIINSKLEVQAFERIEDQIKLIGFFKSEES  155 (350)
T ss_dssp             CCSTTEEEEEETTE--EEEECSCCCHHHHHHHHHTTSSCS---------EEECCSHHHHHHHHHCCSSCEEEEECSCTTS
T ss_pred             CCccceEEEEECCc--EEEecCCCCHHHHHHHHHHhcCCc---------ceeccchHHHHHHhccCCCcEEEEEECCCCc
Confidence            99999999998775  479999999999999999886532         45664 6788888731566889999999754


Q ss_pred             ccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC-CCHHHHHHHHHHhcCC
Q 018270          173 HCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFVSFINEKCGT  251 (358)
Q Consensus       173 ~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~~~i~~~~~~  251 (358)
                         ...+.|.++|..++  +++.|+.+.   +.+++++|+++ +|++++|++++..+..|.|. ++.++|.+||+++.-+
T Consensus       156 ---~~~~~~~~~A~~~~--~~~~f~~~~---~~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p  226 (350)
T 1sji_A          156 ---EYYKAFEEAAEHFQ--PYIKFFATF---DKGVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRP  226 (350)
T ss_dssp             ---HHHHHHHHHHHHTT--TTSEEEEEC---CHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCCC
T ss_pred             ---HHHHHHHHHHHhhc--cCcEEEEEC---CHHHHHHcCCC-CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCcc
Confidence               45789999999985  467787763   56799999999 99999999866677889997 9999999999987654


Q ss_pred             C
Q 018270          252 S  252 (358)
Q Consensus       252 ~  252 (358)
                      .
T Consensus       227 ~  227 (350)
T 1sji_A          227 T  227 (350)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-27  Score=210.34  Aligned_cols=213  Identities=26%  Similarity=0.512  Sum_probs=172.1

Q ss_pred             cCCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccCC
Q 018270           21 LADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGY   97 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~   97 (358)
                      ....+++||.++|++.+ +.+++++|+|||+||++|+.+.|.|+++++.++  +.+.++.|||+  ++.++|++|+|.++
T Consensus        15 ~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~--~~~~~~~v~~d~~~~~~l~~~~~I~~~   92 (298)
T 3ed3_A           15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD--GVVQVAAVNCDLNKNKALCAKYDVNGF   92 (298)
T ss_dssp             SCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTSTTTHHHHHHTTCCBS
T ss_pred             CCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHcc--CCcEEEEEEccCccCHHHHHhCCCCcc
Confidence            45689999999999999 568899999999999999999999999999997  45889999998  68999999999999


Q ss_pred             CeEEEccCCCC----------------CcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEc-CcccHHHHHhcCCC
Q 018270           98 PTIQWFPKGSL----------------EPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVL-TADNFDEIVLDKSK  160 (358)
Q Consensus        98 P~l~~~~~~~~----------------~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l-~~~~f~~~~~~~~~  160 (358)
                      ||+++|.+|+.                .+..|.|.++.+.|.+|+.+..+.         .+..+ +.+++++++...+.
T Consensus        93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~---------~v~~i~~~~~l~~~l~~~~~  163 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRS---------YVKKFVRIDTLGSLLRKSPK  163 (298)
T ss_dssp             SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCC---------CEEECSCGGGHHHHHTSCSS
T ss_pred             ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhccc---------ccEEcCCHHHHHHHHhcCCc
Confidence            99999998751                357899999999999999987643         34556 45778888854456


Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHH--HhcC-----C-------------CcccEEE
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA--EKYG-----V-------------SGFPTLK  220 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~--~~~~-----v-------------~~~Pti~  220 (358)
                      ++++.|..     .....+.|.++|..+.  +.+.|+.++..+...+.  ++|+     |             ...|+++
T Consensus       164 ~~vi~fs~-----~~~~~~~f~~~A~~~~--~~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv  236 (298)
T 3ed3_A          164 LSVVLFSK-----QDKISPVYKSIALDWL--GKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLV  236 (298)
T ss_dssp             EEEEEEES-----SSSCCHHHHHHHHHTB--TTEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEE
T ss_pred             eEEEEEcC-----CCcchHHHHHHHHHhh--cCcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEE
Confidence            77777732     2356789999999996  57889988755332222  2232     2             6799999


Q ss_pred             EEeCCCcceeeecC-CCCHHHHHHHHHHhcCC
Q 018270          221 FFPKGNKDGEEYGG-GRDLEDFVSFINEKCGT  251 (358)
Q Consensus       221 ~~~~g~~~~~~~~g-~~~~~~l~~~i~~~~~~  251 (358)
                      +|+.....+..|.| ..+.++|.+||.++.+.
T Consensus       237 ~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~~  268 (298)
T 3ed3_A          237 VFDADKDKFWEYEGNSINKNDISKFLRDTFSI  268 (298)
T ss_dssp             EEETTTTEEEECCCSSCCHHHHHHHHHHHHTC
T ss_pred             EEcCCCCceEEeccccCCHHHHHHHHHhhcCC
Confidence            99987778899996 68999999999976554

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.95  E-value=8.2e-28  Score=222.61  Aligned_cols=209  Identities=25%  Similarity=0.518  Sum_probs=153.7

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhc----CCceEEEEEeCccchhhHhhcCccCC
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK----AKSVLIGKVDCDEHKSLCSKYGVQGY   97 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~----~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (358)
                      .+.+..||.++|+++++++++++|+|||+||+||+.+.|.|+++++.++.    .+.+.++.|||+++.++|++|+|.++
T Consensus         4 ~~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~   83 (382)
T 2r2j_A            4 GSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKY   83 (382)
T ss_dssp             ----CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEE
T ss_pred             CCceEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcC
Confidence            35688999999999998889999999999999999999999999999853    24699999999999999999999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcC-cccHHHHHhcCCCcEEEEEcCCCCcccch
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLT-ADNFDEIVLDKSKDVLVEFYAPWCGHCKN  176 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~-~~~f~~~~~~~~~~v~v~f~a~~C~~c~~  176 (358)
                      ||+++|++|......|.|.++.+.|.+|+.+..++.         +..++ ..+++. + ..+..++|.|+++++.+   
T Consensus        84 Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~---------v~~l~~~~~l~~-l-~~~~~~~v~ff~~~~~~---  149 (382)
T 2r2j_A           84 PTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDP---------IQEIRDLAEITT-L-DRSKRNIIGYFEQKDSD---  149 (382)
T ss_dssp             SEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSCC---------CEEC--------------CCEEEEEESCSSSH---
T ss_pred             CEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccCC---------ceecCCHHHHHH-h-cCCCCEEEEEECCCCCh---
Confidence            999999877543236999999999999999886543         34453 346766 4 56778899999987654   


Q ss_pred             hhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC-cceeeecCCC-CHHHHHHHHHHhcCC
Q 018270          177 LAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN-KDGEEYGGGR-DLEDFVSFINEKCGT  251 (358)
Q Consensus       177 ~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~-~~~~~~~g~~-~~~~l~~~i~~~~~~  251 (358)
                      ..+.|.++|..++  +++.|+....    +++++++++++| +++++.+. .....|.|.+ +.++|.+||+.+..+
T Consensus       150 ~~~~f~~~A~~~~--~~~~F~~~~~----~~~~~~~v~~~p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p  219 (382)
T 2r2j_A          150 NYRVFERVANILH--DDCAFLSAFG----DVSKPERYSGDN-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVP  219 (382)
T ss_dssp             HHHHHHHHHHHHT--TTCEEEEEES----CC--------CE-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHhh--ccceEEEEeh----hhHHhhCCCCCc-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhcccC
Confidence            3668999999996  3466655544    357789999999 66666532 2567899998 999999999987643

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.94  E-value=5.2e-25  Score=191.32  Aligned_cols=224  Identities=18%  Similarity=0.352  Sum_probs=164.1

Q ss_pred             ccCCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeC--ccchhhHhhcCcc
Q 018270           20 ALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDC--DEHKSLCSKYGVQ   95 (358)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~--~~~~~l~~~~~i~   95 (358)
                      ...+.+..++.++|.+.+ ..+++++|+|||+||++|+.+.|.|+++++.+++. ..+.++.|||  +++.++|++|+|.
T Consensus         9 ~~~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~   88 (244)
T 3q6o_A            9 SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIP   88 (244)
T ss_dssp             CTTSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CCCCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCC
Confidence            445679999999999988 55699999999999999999999999999999742 3799999999  6789999999999


Q ss_pred             CCCeEEEccCCCCC----cccccCCCCHHHHHHHHhccCCCCcc-ccCCCCCceEcCcccHHHHHhc-CCCcEEEEEcCC
Q 018270           96 GYPTIQWFPKGSLE----PKKYEGPRSTEALAEYVNNEGGTNVK-IAAVPSNVVVLTADNFDEIVLD-KSKDVLVEFYAP  169 (358)
Q Consensus        96 ~~P~l~~~~~~~~~----~~~~~g~~~~~~i~~~i~~~~~~~~~-~~~~~~~v~~l~~~~f~~~~~~-~~~~v~v~f~a~  169 (358)
                      ++||+++|.+|+..    ...+.| .+.+.+.+++.+....... .+.....+..++..+++.++.. ...++.+.|...
T Consensus        89 ~~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f~~~  167 (244)
T 3q6o_A           89 GFPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXG  167 (244)
T ss_dssp             SSSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEEECT
T ss_pred             ccCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEEEEC
Confidence            99999999976542    225556 7999999999886543321 1111122344556777776643 345666777765


Q ss_pred             CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          170 WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       170 ~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      .|       +...+++..+.....+.+..++ +.+..++++|||+++|++++|..+++....-....+.+.+..++++..
T Consensus       168 ~~-------~~~~~~~~d~~~~~~i~v~~~~-~~~~~l~~~f~v~~~Pslvl~~~~g~~~~~~~~~~~r~~~~~~l~~~~  239 (244)
T 3q6o_A          168 GS-------YLAREVALDLSQHKGVAVRRVL-NTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLS  239 (244)
T ss_dssp             TC-------CHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEETTSCEEECCCSSSSHHHHHHHHHTC-
T ss_pred             Cc-------chHHHHHHHhccCCceEEEEEe-CchHHHHHHcCCCCCCeEEEEeCCCCeEeeccccccHHHHHHHHHhCC
Confidence            42       2455566666655677777666 345789999999999999999877653333345567788888888766


Q ss_pred             CCC
Q 018270          250 GTS  252 (358)
Q Consensus       250 ~~~  252 (358)
                      |..
T Consensus       240 ~~~  242 (244)
T 3q6o_A          240 GLT  242 (244)
T ss_dssp             ---
T ss_pred             CCC
Confidence            643

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.92  E-value=8.6e-24  Score=201.23  Aligned_cols=225  Identities=18%  Similarity=0.336  Sum_probs=168.2

Q ss_pred             ccCCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhc-CCceEEEEEeCc--cchhhHhhcCcc
Q 018270           20 ALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK-AKSVLIGKVDCD--EHKSLCSKYGVQ   95 (358)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~-~~~v~~~~vd~~--~~~~l~~~~~i~   95 (358)
                      .....+..++.++|++.+ +++++++|+|||+||++|+.+.|.|+++++.+++ ...+.++.|||+  ++.++|++|+|.
T Consensus         9 ~~~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~   88 (519)
T 3t58_A            9 SSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIA   88 (519)
T ss_dssp             CTTSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCC
T ss_pred             CCCCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCc
Confidence            345679999999999987 6679999999999999999999999999999974 237999999995  589999999999


Q ss_pred             CCCeEEEccCCCC---CcccccCCCCHHHHHHHHhccCCCCcc-ccCCCCCceEcCcccHHHHHhc-CCCcEEEEEcCCC
Q 018270           96 GYPTIQWFPKGSL---EPKKYEGPRSTEALAEYVNNEGGTNVK-IAAVPSNVVVLTADNFDEIVLD-KSKDVLVEFYAPW  170 (358)
Q Consensus        96 ~~P~l~~~~~~~~---~~~~~~g~~~~~~i~~~i~~~~~~~~~-~~~~~~~v~~l~~~~f~~~~~~-~~~~v~v~f~a~~  170 (358)
                      ++||+++|.+|..   ....+.|.++.+.+.++|.+....... .+.....+..++..+++.++.. ...++++.|+...
T Consensus        89 ~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~~~~~~vallF~~~~  168 (519)
T 3t58_A           89 GFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFERED  168 (519)
T ss_dssp             SBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGSCCCSEEEEEEECTT
T ss_pred             ccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhccCCCCeEEEEecCCc
Confidence            9999999987432   335567889999999999886653321 1122223455667777776643 3456777887542


Q ss_pred             CcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecC-CCCHHHHHHHHHHhc
Q 018270          171 CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFINEKC  249 (358)
Q Consensus       171 C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~~  249 (358)
                             .+...+++..+.....+.+..++ +.+.+++++|||+++|++++|..+++. ..+.. .-+.+.+..++++..
T Consensus       169 -------s~~~~~~~ldl~~~~~v~v~~v~-~~~~~l~~kfgV~~~Pslvl~~~nGk~-~~~~v~~~~r~~~~~~l~~l~  239 (519)
T 3t58_A          169 -------SYLGREVTLDLSQYHAVAVRRVL-NTESDLVNKFGVTDFPSCYLLLRNGSV-SRVPVLVESRSFYTSYLRGLP  239 (519)
T ss_dssp             -------CCHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEETTSCE-EECCCSSCSHHHHHHHHTTST
T ss_pred             -------hHHHHHHHHHhhccCCeeEEEec-CchHHHHHHcCCCCCCeEEEEeCCCce-eecccccccHHHHHHHHHHcc
Confidence                   44677788888766778876655 446789999999999999999887652 22222 234466778877655


Q ss_pred             CCCC
Q 018270          250 GTSR  253 (358)
Q Consensus       250 ~~~~  253 (358)
                      +..+
T Consensus       240 ~~~~  243 (519)
T 3t58_A          240 GLTR  243 (519)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            5443

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.89  E-value=1.8e-22  Score=157.17  Aligned_cols=110  Identities=36%  Similarity=0.643  Sum_probs=99.8

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhc---CCCCeEEEEEeCcccHHHHHhcCCCc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT---LEDDVVVANLDADKYKDLAEKYGVSG  215 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~---~~~~v~~~~vd~~~~~~l~~~~~v~~  215 (358)
                      .++.+..++.++|++.+.+.+++++|.||++||++|+.+.|.|+++++.+.   ..+++.++.||++++.+++++|+|.+
T Consensus        13 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~   92 (127)
T 3h79_A           13 RPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG   92 (127)
T ss_dssp             CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCS
T ss_pred             CCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCcc
Confidence            467799999999999996678999999999999999999999999999874   23579999999999999999999999


Q ss_pred             ccEEEEEeCCCc-ceeeecCCCCHHHHHHHHHHh
Q 018270          216 FPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       216 ~Pti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +||+++|++|+. .+..|.|.++.+.|.+||+++
T Consensus        93 ~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           93 FPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            999999998876 347899999999999999874

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.89  E-value=5.9e-21  Score=175.40  Aligned_cols=210  Identities=15%  Similarity=0.240  Sum_probs=173.9

Q ss_pred             cCCCeEEc-ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           21 LADDVVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        21 ~~~~v~~l-~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ....+..+ +.++++++++.+..++|-|+.+-+..+   ...|.++|+.+   +++.|+.++   +.++|+.+++.. |+
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~~~~~vvgff~~~~~~~---~~~f~~~A~~~---~~~~F~~t~---~~~v~~~~~v~~-~~   84 (361)
T 3uem_A           15 GSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDS---AKQFLQAAEAI---DDIPFGITS---NSDVFSKYQLDK-DG   84 (361)
T ss_dssp             CCSSSEECCSHHHHHHHHHTSSEEEEEECSCTTSHH---HHHHHHHHHHC---SSSCEEEEC---CHHHHHHTTCSS-SE
T ss_pred             ccccceecCCHHHHHHHHhcCCcEEEEEEcCCCchH---HHHHHHHHhcC---CCceEEEEC---cHHHHHHhCCCC-Ce
Confidence            34456677 558899999888999999998765544   57899999987   457777554   688999999998 99


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhh
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP  179 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~  179 (358)
                      +++|+........|.|..+.++|.+|+.....         ..+.+++.+++.++.....++++|.||++||++|+++.|
T Consensus        85 i~lfk~f~~~~~~~~g~~~~~~i~~fi~~~~~---------p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~  155 (361)
T 3uem_A           85 VVLFKKFDEGRNNFEGEVTKENLLDFIKHNQL---------PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLS  155 (361)
T ss_dssp             EEEEESSTTSEEECCSCCCHHHHHHHHHHHSS---------CSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHH
T ss_pred             EEEEEecCCCccccCCcCCHHHHHHHHHHcCC---------CcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHH
Confidence            99998744455789999999999999998753         337789999999988555678899999999999999999


Q ss_pred             hHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCc--ccEEEEEeCCCcceeeec---CCCCHHHHHHHHHHhcCCC
Q 018270          180 TYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSG--FPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       180 ~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~--~Pti~~~~~g~~~~~~~~---g~~~~~~l~~~i~~~~~~~  252 (358)
                      .|+++|+.++  +.+.|+.+|++  ++..+++.|||++  +|+++++..++ ....|.   |..+.+.|.+|+.+.+...
T Consensus       156 ~~~~~A~~~~--~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~-~~~ky~~~~~~~~~~~l~~fi~~~l~g~  232 (361)
T 3uem_A          156 NFKTAAESFK--GKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE-EMTKYKPESEELTAERITEFCHRFLEGK  232 (361)
T ss_dssp             HHHHHHGGGT--TTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC---CCEECCSSCCCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcc--CceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC-cccccCCCccccCHHHHHHHHHHHhcCC
Confidence            9999999996  46999999999  7899999999987  99999999764 344554   7899999999999987543

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.88  E-value=8.8e-21  Score=162.67  Aligned_cols=206  Identities=13%  Similarity=0.150  Sum_probs=168.6

Q ss_pred             CeEEc-ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l-~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      .+..+ +.++++++++.++.++|.||++|   |....+.|.++|+.+.   ++.|+...   +.++|++|++.+ |++++
T Consensus        10 ~~~~l~s~~~~~~~l~~~~v~vVgff~~~---~~~~~~~f~~~A~~l~---~~~F~~t~---~~~v~~~~~v~~-p~i~l   79 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFIAATEVAVIGFFQDL---EIPAVPILHSMVQKFP---GVSFGIST---DSEVLTHYNITG-NTICL   79 (227)
T ss_dssp             CCEECCSHHHHHHHHHTSSEEEEEECSCS---CSTHHHHHHHHTTTCT---TSEEEEEC---CHHHHHHTTCCS-SEEEE
T ss_pred             CCeeeCCHHHHHHHHhcCCeEEEEEecCC---CchhHHHHHHHHHhCC---CceEEEEC---CHHHHHHcCCCC-CeEEE
Confidence            34455 67999999988999999999998   5689999999999883   58888754   678999999998 99999


Q ss_pred             ccCCCCCccccc----CCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhh
Q 018270          103 FPKGSLEPKKYE----GPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLA  178 (358)
Q Consensus       103 ~~~~~~~~~~~~----g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~  178 (358)
                      |++.......|.    |.++.++|.+|+.....         ..+.+++.+|+.++....-..+++.|..+||++|..+.
T Consensus        80 fk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~---------plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~  150 (227)
T 4f9z_D           80 FRLVDNEQLNLEDEDIESIDATKLSRFIEINSL---------HMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENM  150 (227)
T ss_dssp             EETTTTEEEEECHHHHHTCCHHHHHHHHHHHCC---------CSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHH
T ss_pred             EEecCcccccccccccCCCCHHHHHHHHHHhCC---------CceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHH
Confidence            997554446777    47999999999998753         34788999999998743335556678889999999999


Q ss_pred             hhHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCC--cccEEEEEeCCCcceeee-cCCCCHHHHHHHHHHhcC
Q 018270          179 PTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVS--GFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       179 ~~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~--~~Pti~~~~~g~~~~~~~-~g~~~~~~l~~~i~~~~~  250 (358)
                      +.|+++|+.++  +++.|+.+|++  .+..+++.||+.  .+|++++++..+...+.+ .+..+.+.|.+|+++...
T Consensus       151 ~~~~~vAk~~k--~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          151 HRYQKAAKLFQ--GKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             HHHHHHHHHTT--TTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhh--CCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence            99999999997  45899999996  467788999998  799999998654333444 378999999999988653

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.87  E-value=1.1e-21  Score=152.59  Aligned_cols=110  Identities=21%  Similarity=0.478  Sum_probs=98.1

Q ss_pred             ccCCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhc---CCceEEEEEeCccchhhHhhcCcc
Q 018270           20 ALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK---AKSVLIGKVDCDEHKSLCSKYGVQ   95 (358)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~---~~~v~~~~vd~~~~~~l~~~~~i~   95 (358)
                      ...+.+..++.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+..   .+.+.++.|||++++++|++|+|.
T Consensus        12 ~~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~   91 (127)
T 3h79_A           12 ERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS   91 (127)
T ss_dssp             -CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCC
T ss_pred             CCCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCc
Confidence            346689999999999998 4689999999999999999999999999987752   257999999999999999999999


Q ss_pred             CCCeEEEccCCCCC-cccccCCCCHHHHHHHHhcc
Q 018270           96 GYPTIQWFPKGSLE-PKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        96 ~~P~l~~~~~~~~~-~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++||+++|.+|+.. +..|.|.++.+++.+||.+.
T Consensus        92 ~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           92 GFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            99999999988754 36899999999999999864

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.86  E-value=2.1e-21  Score=145.30  Aligned_cols=100  Identities=26%  Similarity=0.647  Sum_probs=87.1

Q ss_pred             eEc-CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          144 VVL-TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       144 ~~l-~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      .++ +.++|++.+.+ ++++++|.|||+||+||+.+.|.++++++.+   +++.+++||++++++++++|+|+++||+++
T Consensus         3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~---~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~   79 (105)
T 3zzx_A            3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSM---SDVVFLKVDVDECEDIAQDNQIACMPTFLF   79 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHC---TTEEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhcc---CCeEEEEEecccCHHHHHHcCCCeecEEEE
Confidence            344 45789998854 4689999999999999999999999999987   469999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      |++| +...++.| .+.+.|.+||+++
T Consensus        80 ~~~G-~~v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           80 MKNG-QKLDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             EETT-EEEEEEES-CCHHHHHHHHHHH
T ss_pred             EECC-EEEEEEeC-cCHHHHHHHHHhc
Confidence            9877 45667777 5899999999875

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.85  E-value=2.9e-21  Score=144.57  Aligned_cols=96  Identities=29%  Similarity=0.622  Sum_probs=85.1

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        29 ~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      +.++|++.+  .++++++|+|||+||+||+.+.|.|+++++.+   +++.++.||++++++++++|+|.++||+++|.+|
T Consensus         7 ~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~---~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~G   83 (105)
T 3zzx_A            7 DQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSM---SDVVFLKVDVDECEDIAQDNQIACMPTFLFMKNG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHC---TTEEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhcc---CCeEEEEEecccCHHHHHHcCCCeecEEEEEECC
Confidence            467899988  35789999999999999999999999999987   5689999999999999999999999999999876


Q ss_pred             CCCcccccCCCCHHHHHHHHhcc
Q 018270          107 SLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       107 ~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .. ..++.| .+.++|.++|+++
T Consensus        84 ~~-v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           84 QK-LDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             EE-EEEEES-CCHHHHHHHHHHH
T ss_pred             EE-EEEEeC-cCHHHHHHHHHhc
Confidence            53 477888 5899999999763

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.85  E-value=8.6e-21  Score=153.86  Aligned_cols=114  Identities=18%  Similarity=0.296  Sum_probs=98.6

Q ss_pred             CCCceEcCcccHHHHHhc-CCCcEEEEEcC-------CCCcccchhhhhHHHHHHHhcCC---CCeEEEEEeCcccHHHH
Q 018270          140 PSNVVVLTADNFDEIVLD-KSKDVLVEFYA-------PWCGHCKNLAPTYEKVAAAFTLE---DDVVVANLDADKYKDLA  208 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~-~~~~v~v~f~a-------~~C~~c~~~~~~~~~la~~~~~~---~~v~~~~vd~~~~~~l~  208 (358)
                      ++.++++|+.+|++++.. .+.+++|+|||       +||++|+.+.|.|+++|+.+..+   +++.|++||++++++++
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            456899999999998843 35689999999       49999999999999999998522   57999999999999999


Q ss_pred             HhcCCCcccEEEEEeCCCcce-----------eee---cC-CCCHHHHHHHHHHhcCCCC
Q 018270          209 EKYGVSGFPTLKFFPKGNKDG-----------EEY---GG-GRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       209 ~~~~v~~~Pti~~~~~g~~~~-----------~~~---~g-~~~~~~l~~~i~~~~~~~~  253 (358)
                      .+|||+++||+++|++|+...           ..|   .| +++++.|.+||++.++...
T Consensus        97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i  156 (178)
T 3ga4_A           97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISI  156 (178)
T ss_dssp             HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCC
T ss_pred             HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCc
Confidence            999999999999999987543           455   35 8999999999999998554

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.85  E-value=1.2e-20  Score=145.67  Aligned_cols=105  Identities=17%  Similarity=0.250  Sum_probs=95.1

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCC--cccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWC--GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C--~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      ....++..+|++.+...+++++|+|||+||  +||+.+.|++++++++|.  +++.|++||.|++++++.+|||.++||+
T Consensus        16 g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~--~~v~~~KVdvDe~~~la~~ygV~siPTl   93 (137)
T 2qsi_A           16 APTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFP--GRLVAAEVAAEAERGLMARFGVAVCPSL   93 (137)
T ss_dssp             -CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTST--TTEEEEEECGGGHHHHHHHHTCCSSSEE
T ss_pred             CCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHcc--CCcEEEEEECCCCHHHHHHcCCccCCEE
Confidence            356789999999996555699999999999  999999999999999995  6899999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++|++|. ...+..|..+.+.|.++|++.+
T Consensus        94 ilFkdG~-~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           94 AVVQPER-TLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEEECCE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            9999884 6777899999999999998765

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.84  E-value=1.9e-20  Score=151.81  Aligned_cols=121  Identities=14%  Similarity=0.229  Sum_probs=101.6

Q ss_pred             cCCCeEEcChhhHHHHhcC--CCcEEEEEEC-------CCChhhhhhhHHHHHHHHHhhcC---CceEEEEEeCccchhh
Q 018270           21 LADDVVVLTEDNFEKEVGQ--DRGALVEFYA-------PWCGHCKKLAPEYEKLGASFKKA---KSVLIGKVDCDEHKSL   88 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~--~~~~lv~fya-------~~c~~C~~~~~~~~~~~~~~~~~---~~v~~~~vd~~~~~~l   88 (358)
                      ....++.+|+++|++.+.+  +.+++|.|||       +||++|+.+.|.|+++++.+...   +++.|++||+++++++
T Consensus        16 ~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~l   95 (178)
T 3ga4_A           16 DDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQL   95 (178)
T ss_dssp             CTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHH
T ss_pred             ccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHH
Confidence            3567999999999998853  5579999999       49999999999999999998622   5699999999999999


Q ss_pred             HhhcCccCCCeEEEccCCCCCc-----------ccc---cC-CCCHHHHHHHHhccCCCCccccCCCC
Q 018270           89 CSKYGVQGYPTIQWFPKGSLEP-----------KKY---EG-PRSTEALAEYVNNEGGTNVKIAAVPS  141 (358)
Q Consensus        89 ~~~~~i~~~P~l~~~~~~~~~~-----------~~~---~g-~~~~~~i~~~i~~~~~~~~~~~~~~~  141 (358)
                      +.+|||+++||+++|++|+...           ..|   .| .++++.|.+||.+.++..+.....+.
T Consensus        96 a~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i~I~rp~n  163 (178)
T 3ga4_A           96 VKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISITVPQAFN  163 (178)
T ss_dssp             HHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCCCCCCSCC
T ss_pred             HHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCccccCCCC
Confidence            9999999999999999887443           344   35 89999999999998887665433333

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=5.4e-20  Score=143.56  Aligned_cols=110  Identities=42%  Similarity=0.749  Sum_probs=100.3

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .+..+..++.++|++.+...+++++|.||++||++|+.+.|.+.++++.+.  +.+.++.+|++.+.+++++|+|.++||
T Consensus        15 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~v~~~Pt   92 (130)
T 2dml_A           15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK--DVVKVGAVNADKHQSLGGQYGVQGFPT   92 (130)
T ss_dssp             TTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTT--TTSEEEEEETTTCHHHHHHHTCCSSSE
T ss_pred             CCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhc--CceEEEEEeCCCCHHHHHHcCCCccCE
Confidence            456789999999999776778999999999999999999999999999985  359999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +++|.+|+.....+.|.++.++|.+|+.+.+.
T Consensus        93 ~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           93 IKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             EEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            99999887667889999999999999998764

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.83  E-value=2.3e-20  Score=144.54  Aligned_cols=105  Identities=14%  Similarity=0.221  Sum_probs=95.8

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCC--CcccchhhhhHHHHHHHhcCCCC-eEEEEEeCcccHHHHHhcCCCcccE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDD-VVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~--C~~c~~~~~~~~~la~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .+..++..+|++.+ ..+++++|+||++|  |++|+.+.|.+++++++|.  ++ +.|++||+|++++++.+|||.++||
T Consensus        18 g~~~~t~~~F~~~v-~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~--g~~v~~~KVdvDe~~~lA~~ygV~sIPT   94 (140)
T 2qgv_A           18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP--DYTWQVAIADLEQSEAIGDRFGAFRFPA   94 (140)
T ss_dssp             TCEECCHHHHHHHH-HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCT--TSCCEEEECCHHHHHHHHHHHTCCSSSE
T ss_pred             CCccCCHHHHHHHH-hCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcC--CCeEEEEEEECCCCHHHHHHcCCccCCE
Confidence            36689999999999 57789999999999  9999999999999999985  56 9999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +++|++|. ...+..|..+.+.|.++|++.+.
T Consensus        95 lilFk~G~-~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           95 TLVFTGGN-YRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEECCE-EEEEEecCCCHHHHHHHHHHHhc
Confidence            99999884 56778999999999999998774

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.82  E-value=2.2e-20  Score=146.31  Aligned_cols=106  Identities=14%  Similarity=0.219  Sum_probs=91.0

Q ss_pred             ceEcC-cccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          143 VVVLT-ADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       143 v~~l~-~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      +..++ ..+|++.+. ..+++|+|.|||+||+||+.+.|.++++|+++.  +.+.|++||+|++++++.+|+|.+.||++
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~--~~v~f~kVDVDe~~e~a~~y~V~siPT~~  100 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIK--NFCVIYLVDITEVPDFNTMYELYDPVSVM  100 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTCCTTTTTTTCCSSEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CCcEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            45564 588998886 477899999999999999999999999999995  46999999999999999999999999999


Q ss_pred             EEeCCCcce-e-------eecCCCC-HHHHHHHHHHhcC
Q 018270          221 FFPKGNKDG-E-------EYGGGRD-LEDFVSFINEKCG  250 (358)
Q Consensus       221 ~~~~g~~~~-~-------~~~g~~~-~~~l~~~i~~~~~  250 (358)
                      +|.+|+... .       +..|..+ .++|.++|...+.
T Consensus       101 fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r  139 (160)
T 2av4_A          101 FFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR  139 (160)
T ss_dssp             EEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence            999885421 3       5778776 8899999987764

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.82  E-value=9.9e-20  Score=137.76  Aligned_cols=107  Identities=39%  Similarity=0.771  Sum_probs=95.6

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      .++.+..++.++|++.+.  +++++|.||++||++|+.+.|.+.++++.+... .++.++.+|++.+.+++++|+|.++|
T Consensus         3 ~~~~v~~l~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P   80 (111)
T 3uvt_A            3 LGSTVLALTENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYP   80 (111)
T ss_dssp             --CCSEECCTTTHHHHHH--SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCCcceEcChhhHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCccc
Confidence            456789999999999994  789999999999999999999999999987543 57999999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      |+++|++| +....+.|..+.++|.+||+++
T Consensus        81 t~~~~~~g-~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           81 TLLLFRGG-KKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEEEETT-EEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEEEeCC-cEEEeccCCcCHHHHHHHHHhc
Confidence            99999877 4567899999999999999875

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.82  E-value=7.5e-20  Score=138.50  Aligned_cols=107  Identities=19%  Similarity=0.445  Sum_probs=97.1

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      ..+..++.++|++.+...+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+++++++|+|.++||++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   81 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYE--ESFGFYYVDVEEEKTLFQRFSLKGVPQIL   81 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTCHHHHHHTTCCSSCEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCcChhHHHhcCCCcCCEEE
Confidence            4578899999999997788999999999999999999999999999985  36999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +|++| +...++.|..+.+.|.+||++.++
T Consensus        82 ~~~~g-~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           82 YFKDG-EYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEETT-EEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEECC-EEEEEEeccCCHHHHHHHHHHHhc
Confidence            99776 456688999999999999988654

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.82  E-value=4.8e-20  Score=139.55  Aligned_cols=105  Identities=24%  Similarity=0.450  Sum_probs=95.7

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..+..++.++|.+.+ +++++++|+||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|+++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   81 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYE--ESFGFYYVDVEEEKTLFQRFSLKGVPQIL   81 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTCHHHHHHTTCCSSCEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCcChhHHHhcCCCcCCEEE
Confidence            468899999999999 788999999999999999999999999999986  46999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +|.+|. ...++.|..+.+++.+|+.+..
T Consensus        82 ~~~~g~-~~~~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           82 YFKDGE-YKGKMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             EEETTE-EEEEEESSCCHHHHHHHHHHHH
T ss_pred             EEECCE-EEEEEeccCCHHHHHHHHHHHh
Confidence            997665 4478899999999999998753

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=2.7e-20  Score=145.90  Aligned_cols=116  Identities=41%  Similarity=0.819  Sum_probs=101.5

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ....+..++.++|+..+...+++++|.||++||++|+.+.|.|.++++.+...+++.++.+|++.+..++++|+|.++||
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   84 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT   84 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSE
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCE
Confidence            45678999999999988556899999999999999999999999999999755689999999999999999999999999


Q ss_pred             EEEEeCCCc-ceeeec-CCCCHHHHHHHHHHhcCCCCC
Q 018270          219 LKFFPKGNK-DGEEYG-GGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       219 i~~~~~g~~-~~~~~~-g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      +++|++|+. ....|. |.++.++|.+||++.++....
T Consensus        85 ~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~~~  122 (133)
T 2dj3_A           85 IYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSR  122 (133)
T ss_dssp             EEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSCSS
T ss_pred             EEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccccC
Confidence            999998865 345677 559999999999999876533

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.82  E-value=9.6e-20  Score=138.32  Aligned_cols=105  Identities=33%  Similarity=0.546  Sum_probs=95.3

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      +..++.++|.+.+ ++++++|+||++||++|+.+.|.+.++++.++  +++.++.+|++++++++++|+|.++|++++|.
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   79 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGKYGVMSIPTLLVLK   79 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHT--TTCEEEEEETTTCCSHHHHTTCCSBSEEEEEE
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEECCCCHHHHHHcCCCcccEEEEEe
Confidence            6789999999999 88999999999999999999999999999987  46999999999999999999999999999995


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhccCCCC
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNEGGTN  133 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~~~~~  133 (358)
                      +| ....++.|..+.+++.+|+.+...+.
T Consensus        80 ~G-~~~~~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           80 DG-EVVETSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             TT-EEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred             CC-EEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence            54 44578899999999999999876643

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=1.1e-19  Score=141.81  Aligned_cols=108  Identities=45%  Similarity=0.843  Sum_probs=98.1

Q ss_pred             cCCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           21 LADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ....+..++.++|.+.+ +++++++|+||++||++|+.+.|.|.++++.++  +.+.++.+|++++.+++++|+|.++||
T Consensus        15 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~v~~~Pt   92 (130)
T 2dml_A           15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK--DVVKVGAVNADKHQSLGGQYGVQGFPT   92 (130)
T ss_dssp             TTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTT--TTSEEEEEETTTCHHHHHHHTCCSSSE
T ss_pred             CCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhc--CceEEEEEeCCCCHHHHHHcCCCccCE
Confidence            34578999999999965 778999999999999999999999999999987  459999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +++|++++.....+.|.++.+++.+|+.+..
T Consensus        93 ~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           93 IKIFGANKNKPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             EEEESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence            9999988865688999999999999998754

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=2.5e-19  Score=141.58  Aligned_cols=112  Identities=42%  Similarity=0.776  Sum_probs=100.3

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ...+..++.++|++.+ ..+++++|.||++||++|+.+.|.|.++++.+... .++.++.+|++++.+++++|+|.++||
T Consensus        16 ~~~v~~l~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   94 (140)
T 2dj1_A           16 ENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPT   94 (140)
T ss_dssp             ETTEEECCTTTHHHHH-TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSE
T ss_pred             CCCCEEcChHhHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCe
Confidence            4568899999999988 66899999999999999999999999999998643 359999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      +++|++|.  ...|.|.++.++|.+||++.++....
T Consensus        95 ~~~~~~G~--~~~~~g~~~~~~l~~~l~~~~~~~~~  128 (140)
T 2dj1_A           95 IKILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDWT  128 (140)
T ss_dssp             EEEEETTE--EEECCSCCCHHHHHHHHHHHHSSSCC
T ss_pred             EEEEECCc--EEEcCCCCCHHHHHHHHHHhcCCCCC
Confidence            99997764  77899999999999999999876543

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=1.4e-19  Score=143.16  Aligned_cols=112  Identities=38%  Similarity=0.776  Sum_probs=100.5

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      ...+..++.++|++.+.++++++|+||++||++|+.+.|.|.++++.+++. ..+.++.||++++.+++++|+|.++|++
T Consensus        16 ~~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   95 (140)
T 2dj1_A           16 ENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTI   95 (140)
T ss_dssp             ETTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEE
T ss_pred             CCCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeE
Confidence            457899999999999988999999999999999999999999999998743 2599999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhccCCCCcc
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK  135 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~  135 (358)
                      ++|.+|.  ...|.|.++.++|.+|+.+..+....
T Consensus        96 ~~~~~G~--~~~~~g~~~~~~l~~~l~~~~~~~~~  128 (140)
T 2dj1_A           96 KILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDWT  128 (140)
T ss_dssp             EEEETTE--EEECCSCCCHHHHHHHHHHHHSSSCC
T ss_pred             EEEECCc--EEEcCCCCCHHHHHHHHHHhcCCCCC
Confidence            9997665  57899999999999999988765543

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.82  E-value=1.8e-19  Score=136.73  Aligned_cols=106  Identities=29%  Similarity=0.513  Sum_probs=96.2

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      +.+++.++|++.+  .+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++++.+++++|+|.++||+++|
T Consensus         3 v~~l~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (112)
T 2voc_A            3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGKYGVMSIPTLLVL   78 (112)
T ss_dssp             CEECCTTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHT--TTCEEEEEETTTCCSHHHHTTCCSBSEEEEE
T ss_pred             eEEecHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            5678999999988  78999999999999999999999999999985  3699999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      ++| +....+.|..+.++|.+|+++..+.++
T Consensus        79 ~~G-~~~~~~~G~~~~~~l~~~l~~~~~~~~  108 (112)
T 2voc_A           79 KDG-EVVETSVGFKPKEALQELVNKHLLEHH  108 (112)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHTTSCSCC
T ss_pred             eCC-EEEEEEeCCCCHHHHHHHHHHHHHhhc
Confidence            665 566789999999999999998877654

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.81  E-value=8.5e-20  Score=146.70  Aligned_cols=129  Identities=19%  Similarity=0.330  Sum_probs=99.8

Q ss_pred             ccCCCeEEcC-hhhHHHHhcC--CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC
Q 018270           20 ALADDVVVLT-EDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG   96 (358)
Q Consensus        20 ~~~~~v~~l~-~~~f~~~~~~--~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (358)
                      +....+..++ .++|.+.+++  +++++|+||++||++|+.+.|.|.++++.+   +++.++.||++++++++++|+|.+
T Consensus         9 ~~~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~~~~~~l~~~~~v~~   85 (153)
T 2wz9_A            9 AAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVPEVSEKYEISS   85 (153)
T ss_dssp             ---CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTSHHHHHHTTCCS
T ss_pred             cccCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHc---CCeEEEEEECCCCHHHHHHcCCCC
Confidence            3445677776 6999999866  899999999999999999999999999987   469999999999999999999999


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHH
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIV  155 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~  155 (358)
                      +|++++|++| ....++.| .+.+++.++|.+..+....  ..+..+..++..+|+.+.
T Consensus        86 ~Pt~~~~~~G-~~~~~~~G-~~~~~l~~~i~~~l~~~~~--~~~~~~~~l~~~~f~~~~  140 (153)
T 2wz9_A           86 VPTFLFFKNS-QKIDRLDG-AHAPELTKKVQRHASSGSF--LPSAKVKVDTDPNSSSVD  140 (153)
T ss_dssp             SSEEEEEETT-EEEEEEES-SCHHHHHHHHHHHSCTTSS--CSCCCCCCC---------
T ss_pred             CCEEEEEECC-EEEEEEeC-CCHHHHHHHHHHHhccccC--CCccccccCCCCChhhHH
Confidence            9999999954 34466777 5788999999988765433  356677888999999877

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.81  E-value=1.6e-19  Score=135.96  Aligned_cols=106  Identities=33%  Similarity=0.666  Sum_probs=95.5

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      +.+..++.++|++.+...+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+++++++|+|.++||++
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhC--CCcEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            4578899999998776788999999999999999999999999999985  46999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +|++| +...++.|..+.++|.+||++.+
T Consensus        80 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           80 LFKNG-EVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEeCC-EEEEEEecCCCHHHHHHHHHHhh
Confidence            99765 45667899999999999998765

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.81  E-value=6e-20  Score=141.70  Aligned_cols=105  Identities=10%  Similarity=0.123  Sum_probs=94.7

Q ss_pred             CCeEEcChhhHHHHhcCCC-cEEEEEECCCC--hhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           23 DDVVVLTEDNFEKEVGQDR-GALVEFYAPWC--GHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~-~~lv~fya~~c--~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ..+..+|+++|++.+.++. +++|.|||+||  ++|+.+.|.++++++++.  +++.+++||.+++++++.+|+|.++||
T Consensus        15 ~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~--~~v~~~KVdvDe~~~la~~ygV~siPT   92 (137)
T 2qsi_A           15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFP--GRLVAAEVAAEAERGLMARFGVAVCPS   92 (137)
T ss_dssp             --CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTST--TTEEEEEECGGGHHHHHHHHTCCSSSE
T ss_pred             cCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHcc--CCcEEEEEECCCCHHHHHHcCCccCCE
Confidence            5677999999999885555 99999999999  999999999999999997  679999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +++|++|... .+..|..+.+++.++|++..
T Consensus        93 lilFkdG~~v-~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           93 LAVVQPERTL-GVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEEEECCEEE-EEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEECCEEE-EEEeCCCCHHHHHHHHHHHh
Confidence            9999988744 78899999999999998764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.81  E-value=1.5e-19  Score=135.46  Aligned_cols=103  Identities=29%  Similarity=0.592  Sum_probs=92.9

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      +..+++++|.+.++++++++|.||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|++++|.
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   79 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHST--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECcCCHHHHHHcCCccccEEEEEe
Confidence            6789999999888888999999999999999999999999999986  45999999999999999999999999999995


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhccC
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +|. ...++.|..+.+++.+++.+..
T Consensus        80 ~G~-~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           80 GGR-PVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             TTE-EEEEEESCCCHHHHHHHTTTTT
T ss_pred             CCe-EEEEEecCCCHHHHHHHHHHHh
Confidence            554 4467899999999999997653

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.81  E-value=1.2e-19  Score=136.80  Aligned_cols=106  Identities=29%  Similarity=0.573  Sum_probs=96.3

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      .+.+..++.++|++.+.++++++|+||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|+++
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~   80 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK--GKAVFGRLNVDENQKIADKYSVLNIPTTL   80 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhC--CCceEEEEccccCHHHHHhcCcccCCEEE
Confidence            3568899999999999889999999999999999999999999999987  46999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +|.+|. ...++.|..+.+++.+++.+..
T Consensus        81 ~~~~g~-~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           81 IFVNGQ-LVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEcCCc-EEEeeeccCCHHHHHHHHHHHh
Confidence            995554 4478999999999999998653

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.81  E-value=1.1e-19  Score=137.61  Aligned_cols=106  Identities=39%  Similarity=0.820  Sum_probs=95.0

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      .+.+..+|+++|++.+. +++++|+||++||++|+.+.|.|.++++.+... ..+.++.+|++++++++++|+|.++|++
T Consensus         4 ~~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (111)
T 3uvt_A            4 GSTVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL   82 (111)
T ss_dssp             -CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEE
Confidence            46789999999999998 789999999999999999999999999987543 4799999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++|.+|. ...++.|..+.+++.+|+.+.
T Consensus        83 ~~~~~g~-~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           83 LLFRGGK-KVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEETTE-EEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEeCCc-EEEeccCCcCHHHHHHHHHhc
Confidence            9997765 447899999999999999764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=9.6e-20  Score=142.64  Aligned_cols=111  Identities=38%  Similarity=0.757  Sum_probs=98.5

Q ss_pred             ccCCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhc--CCceEEEEEeCccchhhHhhcCccC
Q 018270           20 ALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK--AKSVLIGKVDCDEHKSLCSKYGVQG   96 (358)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~--~~~v~~~~vd~~~~~~l~~~~~i~~   96 (358)
                      +....+..++.++|.+.+ +++++++|+||++||++|+.+.|.|.++++.++.  .+.+.++.||++++++++++|+|.+
T Consensus         4 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~   83 (133)
T 1x5d_A            4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRG   83 (133)
T ss_dssp             SSCCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCS
T ss_pred             CCCCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCe
Confidence            345678999999999977 6789999999999999999999999999999862  1359999999999999999999999


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      +|++++|++|. ...++.|.++.+++.+|+.+...
T Consensus        84 ~Pt~~~~~~g~-~~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           84 FPTIKIFQKGE-SPVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             SSEEEEEETTE-EEEEECSCCSHHHHHHHHHHHHH
T ss_pred             eCeEEEEeCCC-ceEEecCCCCHHHHHHHHHHHhh
Confidence            99999998865 45789999999999999998654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.81  E-value=1.7e-19  Score=135.26  Aligned_cols=103  Identities=35%  Similarity=0.561  Sum_probs=94.0

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ..+.++++++|++.+ ++++++|+||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|++++
T Consensus         3 ~~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (106)
T 3die_A            3 MAIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYE--GKADILKLDVDENPSTAAKYEVMSIPTLIV   79 (106)
T ss_dssp             CCCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             cceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCcEEEEEECCcCHHHHHhCCCcccCEEEE
Confidence            457899999999999 88999999999999999999999999999997  459999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |++|. ...++.|..+.+++.+++.+.
T Consensus        80 ~~~G~-~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           80 FKDGQ-PVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EETTE-EEEEEESCCCHHHHHHHHHTT
T ss_pred             EeCCe-EEEEEeCCCCHHHHHHHHHHh
Confidence            98654 446889999999999999864

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2.7e-19  Score=140.05  Aligned_cols=112  Identities=43%  Similarity=0.773  Sum_probs=100.2

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhc--CCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT--LEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~--~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      ....+..++..+|++.+...+++++|.||++||++|+.+.|.|.++++.+.  ..+++.++.+|++.+.+++++|+|.++
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   84 (133)
T 1x5d_A            5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF   84 (133)
T ss_dssp             SCCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSS
T ss_pred             CCCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCee
Confidence            456688999999999886778999999999999999999999999999985  124699999999999999999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      ||+++|.+| +....|.|.++.++|.+||.+.+..
T Consensus        85 Pt~~~~~~g-~~~~~~~G~~~~~~l~~~l~~~~~~  118 (133)
T 1x5d_A           85 PTIKIFQKG-ESPVDYDGGRTRSDIVSRALDLFSD  118 (133)
T ss_dssp             SEEEEEETT-EEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCC-CceEEecCCCCHHHHHHHHHHHhhc
Confidence            999999986 4677899999999999999988754

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.81  E-value=3.7e-19  Score=134.95  Aligned_cols=109  Identities=31%  Similarity=0.626  Sum_probs=97.1

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ++..+..++.++|.+.+...+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+.+++++|+|.++||
T Consensus         3 m~~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt   80 (112)
T 1t00_A            3 MAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLNIDENPGTAAKYGVMSIPT   80 (112)
T ss_dssp             SSCCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             ccceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhc--CCeEEEEEEcCCCHHHHHhCCCCcccE
Confidence            455688999999998876778999999999999999999999999999985  469999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +++|++| +...++.|..+.+++.++|++.+.
T Consensus        81 ~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           81 LNVYQGG-EVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEEEeCC-EEEEEEeCCCCHHHHHHHHHHHhh
Confidence            9999766 456678999999999999987653

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.81  E-value=3.7e-20  Score=143.44  Aligned_cols=105  Identities=11%  Similarity=0.135  Sum_probs=97.0

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECCC--ChhhhhhhHHHHHHHHHhhcCCc-eEEEEEeCccchhhHhhcCccCCCeE
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKKLAPEYEKLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~--c~~C~~~~~~~~~~~~~~~~~~~-v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      .+..+|+++|++.+.++.+++|+||++|  |++|+.+.|.++++++++.  ++ +.|++||.+++++++.+|||.++||+
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~--g~~v~~~KVdvDe~~~lA~~ygV~sIPTl   95 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP--DYTWQVAIADLEQSEAIGDRFGAFRFPAT   95 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCT--TSCCEEEECCHHHHHHHHHHHTCCSSSEE
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcC--CCeEEEEEEECCCCHHHHHHcCCccCCEE
Confidence            7789999999999988889999999999  9999999999999999997  66 99999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      ++|++|... .+..|..+.+.+.++|++...
T Consensus        96 ilFk~G~~v-~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           96 LVFTGGNYR-GVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EEEETTEEE-EEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEECCEEE-EEEecCCCHHHHHHHHHHHhc
Confidence            999988754 788899999999999987653

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.81  E-value=2.2e-19  Score=135.23  Aligned_cols=104  Identities=31%  Similarity=0.704  Sum_probs=93.3

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      +.+..++.++|.+.+ +++++++|.||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|+++
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhC--CCcEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            568899999999665 778999999999999999999999999999987  46999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +|.+|. ...++.|..+.+++.+++.+.
T Consensus        80 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~  106 (108)
T 2trx_A           80 LFKNGE-VAATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHHHHH
T ss_pred             EEeCCE-EEEEEecCCCHHHHHHHHHHh
Confidence            996554 446788999999999999865

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.80  E-value=1.7e-19  Score=140.39  Aligned_cols=108  Identities=31%  Similarity=0.615  Sum_probs=96.6

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      +++.+..++.++|++.+...+++++|.||++||++|+.+.|.++++++.+.  +++.++.+|++++.+++++|+|.++||
T Consensus        20 m~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt   97 (128)
T 2o8v_B           20 HSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPT   97 (128)
T ss_dssp             -CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTT--TTEEEEEEETTTCCTTSGGGTCCSSSE
T ss_pred             cccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCccCE
Confidence            456688999999998776788999999999999999999999999999985  469999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +++|++| +....+.|..+.++|.+||++.+
T Consensus        98 ~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           98 LLLFKNG-EVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEeCC-EEEEEEcCCCCHHHHHHHHHHhh
Confidence            9999665 55677899999999999998765

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.80  E-value=4e-19  Score=139.82  Aligned_cols=114  Identities=29%  Similarity=0.554  Sum_probs=99.0

Q ss_pred             CCCceEcCcccHHHHHhc-----------CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHH
Q 018270          140 PSNVVVLTADNFDEIVLD-----------KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA  208 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~-----------~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~  208 (358)
                      ...+..++..+|.+.+.+           .+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+.+++
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~   85 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYD--GQIVIYKVDTEKEQELA   85 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHH
Confidence            345788999999998853           46899999999999999999999999999985  46999999999999999


Q ss_pred             HhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCCC
Q 018270          209 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGK  256 (358)
Q Consensus       209 ~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~  256 (358)
                      ++|+|.++||+++|..+++. ..+.|..+.++|.+||++.++..+...
T Consensus        86 ~~~~v~~~Pt~~~~~~~G~~-~~~~G~~~~~~l~~~l~~~~~~~~~~~  132 (136)
T 2l5l_A           86 GAFGIRSIPSILFIPMEGKP-EMAQGAMPKASFKKAIDEFLLKKEGHH  132 (136)
T ss_dssp             HHTTCCSSCEEEEECSSSCC-EEEESCCCHHHHHHHHHHHHTSCTTSS
T ss_pred             HHcCCCCCCEEEEECCCCcE-EEEeCCCCHHHHHHHHHHHhhccCCCC
Confidence            99999999999999444443 378999999999999999988776544

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.80  E-value=2.7e-19  Score=141.64  Aligned_cols=109  Identities=28%  Similarity=0.558  Sum_probs=96.0

Q ss_pred             CCCCceEcCcccHHHHHhc-----------CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHH
Q 018270          139 VPSNVVVLTADNFDEIVLD-----------KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL  207 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~-----------~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l  207 (358)
                      .+..+..++..+|+..+.+           .+++++|.||++||++|+.+.|.+.++++.+.  +++.++.||++.+.++
T Consensus        20 ~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~   97 (141)
T 3hxs_A           20 PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPEL   97 (141)
T ss_dssp             ---CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHH
T ss_pred             CCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CceEEEEEECCCCHHH
Confidence            4567899999999998855           47899999999999999999999999999985  4699999999999999


Q ss_pred             HHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          208 AEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       208 ~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +++|+|.++||+++|..++.. ..+.|..+.++|.+||++.+.
T Consensus        98 ~~~~~v~~~Pt~~~~~~~g~~-~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           98 ARDFGIQSIPTIWFVPMKGEP-QVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHHTTCCSSSEEEEECSSSCC-EEEESCCCHHHHHHHHHHTTC
T ss_pred             HHHcCCCCcCEEEEEeCCCCE-EEEeCCCCHHHHHHHHHHHHc
Confidence            999999999999999766554 489999999999999988754

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.80  E-value=3.2e-20  Score=171.64  Aligned_cols=114  Identities=32%  Similarity=0.642  Sum_probs=97.5

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC----CCCeEEEEEeCcccHHHHHhcCCC
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL----EDDVVVANLDADKYKDLAEKYGVS  214 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~----~~~v~~~~vd~~~~~~l~~~~~v~  214 (358)
                      .++.+..|+.++|++.+ ..+++++|.||||||++|+.+.|.|+++++.++.    .+++.++.|||+.+.++|++|+|+
T Consensus         3 ~~~~v~~l~~~~f~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~   81 (382)
T 2r2j_A            3 LGSEITSLDTENIDEIL-NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRIS   81 (382)
T ss_dssp             -----CBCCTTTHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCC
T ss_pred             CCCceEECCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCC
Confidence            34568889999999987 6678999999999999999999999999999853    346999999999999999999999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      ++||+++|++|......|.|.++.+.|.+|+.+.++...
T Consensus        82 ~~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v  120 (382)
T 2r2j_A           82 KYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPI  120 (382)
T ss_dssp             EESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSCCC
T ss_pred             cCCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccCCc
Confidence            999999999885433469999999999999999987653

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.80  E-value=1.7e-17  Score=151.65  Aligned_cols=211  Identities=15%  Similarity=0.164  Sum_probs=171.0

Q ss_pred             CCCeEEcC-hhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           22 ADDVVVLT-EDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        22 ~~~v~~l~-~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ...+..++ .++++++++ +++.++|.||++||.   ...+.|.+++..+.  +++.|+.++   +.++|+++++. +|+
T Consensus       122 ~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~~~~~A~~~~--~~~~f~~~~---~~~~~~~~~v~-~p~  192 (350)
T 1sji_A          122 EDPVEIINSKLEVQAFERIEDQIKLIGFFKSEES---EYYKAFEEAAEHFQ--PYIKFFATF---DKGVAKKLSLK-MNE  192 (350)
T ss_dssp             SCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTS---HHHHHHHHHHHHTT--TTSEEEEEC---CHHHHHHHTCC-TTC
T ss_pred             CCcceeccchHHHHHHhccCCCcEEEEEECCCCc---HHHHHHHHHHHhhc--cCcEEEEEC---CHHHHHHcCCC-CCc
Confidence            45677885 678999887 778899999999864   45689999999987  568888875   46799999999 999


Q ss_pred             EEEccCCCCCcccccCC-CCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCC-CcEEEEEcCCCCcccchh
Q 018270          100 IQWFPKGSLEPKKYEGP-RSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKS-KDVLVEFYAPWCGHCKNL  177 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~-~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~-~~v~v~f~a~~C~~c~~~  177 (358)
                      +++|++.+..+..|.|. ++.++|.+|+.....         ..+.+++.+++.++....- +..++.|+.+||++|..+
T Consensus       193 i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~---------p~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~  263 (350)
T 1sji_A          193 VDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQR---------PTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEF  263 (350)
T ss_dssp             EEEECTTCSSCEECSSSSCCHHHHHHHHHHHCC---------CSEEECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHH
T ss_pred             EEEEeCCCCCceecCCCCCCHHHHHHHHHHcCc---------cchhhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHH
Confidence            99998865556789997 999999999998643         3478899999999873322 445667999999999999


Q ss_pred             hhhHHHHHHHhcCCCCeEEEEEeCcccHHHH----HhcCCC-cccEEEEEeCCCcceee--e---cCCCCHHHHHHHHHH
Q 018270          178 APTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVS-GFPTLKFFPKGNKDGEE--Y---GGGRDLEDFVSFINE  247 (358)
Q Consensus       178 ~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~-~~Pti~~~~~g~~~~~~--~---~g~~~~~~l~~~i~~  247 (358)
                      .+.++++|+.+++..++.|+.+|++..+.++    +.||++ ++|++++++..+...+.  +   .|..+.+.+.+|+++
T Consensus       264 ~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d  343 (350)
T 1sji_A          264 LEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIED  343 (350)
T ss_dssp             HHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCCCccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHH
Confidence            9999999999975457899999999888877    889998 58999999863222222  3   357899999999998


Q ss_pred             hcC
Q 018270          248 KCG  250 (358)
Q Consensus       248 ~~~  250 (358)
                      ...
T Consensus       344 ~~~  346 (350)
T 1sji_A          344 VLS  346 (350)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.80  E-value=1.4e-19  Score=138.78  Aligned_cols=112  Identities=41%  Similarity=0.853  Sum_probs=99.7

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCe
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ..+.+..++.++|++.+.++++++|+||++||++|+.+.|.+.++++.+++. ..+.++.+|++++++++++|+|.++|+
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   84 (120)
T 1mek_A            5 EEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             EETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccE
Confidence            3467899999999999988999999999999999999999999999998753 369999999999999999999999999


Q ss_pred             EEEccCCCCC-cccccCCCCHHHHHHHHhccCCC
Q 018270          100 IQWFPKGSLE-PKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       100 l~~~~~~~~~-~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +++|.+|... +..+.|.++.+++.+|+.+..++
T Consensus        85 ~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             EEEEeCCCcCCcccccCccCHHHHHHHHHhccCC
Confidence            9999766532 36889999999999999987654

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.80  E-value=1.1e-19  Score=140.11  Aligned_cols=110  Identities=30%  Similarity=0.604  Sum_probs=96.8

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      |+.+..++.++|++.+...+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+.+++++|+|.++||+
T Consensus         2 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (122)
T 3aps_A            2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK--GKVRAGKVDCQAYPQTCQKAGIKAYPSV   79 (122)
T ss_dssp             CCCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CcchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCcCCHHHHHHcCCCccceE
Confidence            56788999999987666788999999999999999999999999999985  3799999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCC----CCHHHHHHHHHHhcCCC
Q 018270          220 KFFPKGNKDGEEYGGG----RDLEDFVSFINEKCGTS  252 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~----~~~~~l~~~i~~~~~~~  252 (358)
                      ++|.+|+. ...+.|.    ++.+.|.+||.+.++..
T Consensus        80 ~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~~~  115 (122)
T 3aps_A           80 KLYQYERA-KKSIWEEQINSRDAKTIAALIYGKLETL  115 (122)
T ss_dssp             EEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred             EEEeCCCc-cceeeccccCcCCHHHHHHHHHHHHHhh
Confidence            99987765 4556654    89999999999876543

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.80  E-value=1.8e-19  Score=138.20  Aligned_cols=112  Identities=45%  Similarity=0.897  Sum_probs=99.1

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      .++.+..++.++|++.+ ..+++++|.||++||++|+.+.|.+.++++.+... .++.++.+|++.+.+++++|+|.++|
T Consensus         5 ~~~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P   83 (120)
T 1mek_A            5 EEDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP   83 (120)
T ss_dssp             EETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSS
T ss_pred             CCCCcEEechhhHHHHH-ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCccc
Confidence            34568899999999988 57889999999999999999999999999998643 47999999999999999999999999


Q ss_pred             EEEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcCC
Q 018270          218 TLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       218 ti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      |+++|++|+. .+..+.|..+.+.|.+||++.++.
T Consensus        84 t~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           84 TIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             EEEEEeCCCcCCcccccCccCHHHHHHHHHhccCC
Confidence            9999987754 237889999999999999987664

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.80  E-value=2.7e-19  Score=137.40  Aligned_cols=110  Identities=31%  Similarity=0.553  Sum_probs=98.5

Q ss_pred             CCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          138 AVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       138 ~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      +.++.+..++.++|++.+...+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+.+++++|+|.++|
T Consensus        10 ~~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~P   87 (119)
T 1w4v_A           10 HGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQH--GKVVMAKVDIDDHTDLAIEYEVSAVP   87 (119)
T ss_dssp             CCCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TSSEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             CCceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCCCCHHHHHHcCCCccc
Confidence            4567788999999999887788999999999999999999999999999885  46999999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      |+++|++| +....+.|..+.+.|.+||++.+|
T Consensus        88 t~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           88 TVLAMKNG-DVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             EEEEEETT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEeCC-cEEEEEcCCCCHHHHHHHHHHHhC
Confidence            99999765 456678999999999999988654

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.80  E-value=1.5e-19  Score=138.16  Aligned_cols=104  Identities=26%  Similarity=0.536  Sum_probs=92.1

Q ss_pred             cCCCeEEcChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           21 LADDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      +.......+.++|++.++  ++++++|+||++||++|+.+.|.|.++++.++   ++.++.||++++++++++|+|.++|
T Consensus        10 ~~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~P   86 (116)
T 3qfa_C           10 HGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMP   86 (116)
T ss_dssp             --CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             CCcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCcccc
Confidence            455678889999999997  89999999999999999999999999999885   3999999999999999999999999


Q ss_pred             eEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           99 TIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++++|.+|. ...++.|. +.+.+.++|.+.
T Consensus        87 t~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           87 TFQFFKKGQ-KVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             EEEEESSSS-EEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEeCCe-EEEEEcCC-CHHHHHHHHHHh
Confidence            999996654 44778898 999999999764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.80  E-value=4.2e-19  Score=133.75  Aligned_cols=106  Identities=33%  Similarity=0.595  Sum_probs=95.8

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      .+.+..++.++|++.+ ..+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+++++++|+|.++||+
T Consensus         3 ~~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~i~~~Pt~   79 (109)
T 3tco_A            3 EDVTLVLTEENFDEVI-RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK--GKAVFGRLNVDENQKIADKYSVLNIPTT   79 (109)
T ss_dssp             CCCCEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCeEEEecHHHHHHHH-hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhC--CCceEEEEccccCHHHHHhcCcccCCEE
Confidence            4567889999999988 568999999999999999999999999999985  4699999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++|.+| +....+.|..+.++|.++|++.+
T Consensus        80 ~~~~~g-~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           80 LIFVNG-QLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEEETT-EEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEcCC-cEEEeeeccCCHHHHHHHHHHHh
Confidence            999666 56677999999999999998764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.80  E-value=6.2e-19  Score=134.24  Aligned_cols=109  Identities=27%  Similarity=0.539  Sum_probs=97.5

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .++.+..++.++|++.+...+++++|.||++||++|+.+.|.++++++.+.  +++.++.+|++.+++++++|+|.++||
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~v~~~Pt   82 (115)
T 1thx_A            5 MSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS--DRLKVVKLEIDPNPTTVKKYKVEGVPA   82 (115)
T ss_dssp             -CCSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT--TTCEEEEEESTTCHHHHHHTTCCSSSE
T ss_pred             ccCceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhC--CcEEEEEEEcCCCHHHHHHcCCCceeE
Confidence            455688999999998876788999999999999999999999999999985  359999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +++|++| +....+.|..+.+.+.+||++.++
T Consensus        83 ~~~~~~G-~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           83 LRLVKGE-QILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEcCC-EEEEEecCCCCHHHHHHHHHHHhc
Confidence            9999665 556678999999999999998765

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.80  E-value=4.4e-19  Score=140.40  Aligned_cols=107  Identities=33%  Similarity=0.592  Sum_probs=96.1

Q ss_pred             CCCeEEcChhhHHHHhc------------CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH
Q 018270           22 ADDVVVLTEDNFEKEVG------------QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC   89 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~------------~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~   89 (358)
                      ...+..++.++|...+.            ++++++|+||++||++|+.+.|.|.++++.++  +.+.++.||++++++++
T Consensus        21 ~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~   98 (141)
T 3hxs_A           21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELA   98 (141)
T ss_dssp             --CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHH
T ss_pred             CCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CceEEEEEECCCCHHHH
Confidence            45789999999999884            37999999999999999999999999999997  56999999999999999


Q ss_pred             hhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           90 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        90 ~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      ++|+|.++|++++|+.++.. ..+.|..+.+++.++|.+...
T Consensus        99 ~~~~v~~~Pt~~~~~~~g~~-~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           99 RDFGIQSIPTIWFVPMKGEP-QVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHTTCCSSSEEEEECSSSCC-EEEESCCCHHHHHHHHHHTTC
T ss_pred             HHcCCCCcCEEEEEeCCCCE-EEEeCCCCHHHHHHHHHHHHc
Confidence            99999999999999777765 589999999999999987653

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.80  E-value=7.4e-19  Score=150.94  Aligned_cols=146  Identities=21%  Similarity=0.292  Sum_probs=121.5

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEE--CCCChhhhhhhHHHHHHHHHhhc-CCceEEEEEeCcc-----chhhHhhcC
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFY--APWCGHCKKLAPEYEKLGASFKK-AKSVLIGKVDCDE-----HKSLCSKYG   93 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fy--a~~c~~C~~~~~~~~~~~~~~~~-~~~v~~~~vd~~~-----~~~l~~~~~   93 (358)
                      ...+..+|+.+|++++.++++++|.||  ||||+    +.|.|+++++.+.+ .+.|.|++|||++     ++++|.+|+
T Consensus        15 ~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~   90 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK   90 (248)
T ss_dssp             CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence            457899999999998888899999999  99998    99999999999975 4679999999998     899999999


Q ss_pred             cc--CCCeEEEccCCC-CCcccc--cCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcC
Q 018270           94 VQ--GYPTIQWFPKGS-LEPKKY--EGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYA  168 (358)
Q Consensus        94 i~--~~P~l~~~~~~~-~~~~~~--~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a  168 (358)
                      |.  ++||+++|. |. ..+..|  .|.++.++|.+||.+..+...   ..+.     .-..++.++.        .|.+
T Consensus        91 V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~~---~~~g-----~i~~~d~l~~--------~f~~  153 (248)
T 2c0g_A           91 VDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLYI---GRDG-----CIKEFNEVLK--------NYAN  153 (248)
T ss_dssp             CCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCCC---CCTT-----CCHHHHHHHT--------TGGG
T ss_pred             CCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhcccc---CCCC-----chHHHHHHHH--------HHhc
Confidence            99  999999999 76 346788  899999999999998866321   1111     1244566551        3888


Q ss_pred             CCCcccchhhhhHHHHHHHh
Q 018270          169 PWCGHCKNLAPTYEKVAAAF  188 (358)
Q Consensus       169 ~~C~~c~~~~~~~~~la~~~  188 (358)
                      +||..|..+.+..++++..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~l  173 (248)
T 2c0g_A          154 IPDAEQLKLIEKLQAKQEQL  173 (248)
T ss_dssp             SCHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhHHHHHHHHHHHHHHc
Confidence            99999988888888887766

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.80  E-value=3.1e-19  Score=134.44  Aligned_cols=105  Identities=26%  Similarity=0.559  Sum_probs=94.7

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      .+..++.++|.++++++++++|+||++||++|+.+.|.+.++++.++  +++.++.+|++++++++++|++.++|++++|
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (109)
T 2yzu_A            2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE--GKLLVAKLDVDENPKTAMRYRVMSIPTVILF   79 (109)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTB--TTBEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh--CceEEEEEECCCCHhHHHhCCCCcCCEEEEE
Confidence            57889999999888889999999999999999999999999999986  4699999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      .+|. ....+.|..+.+++.+|+.+..+
T Consensus        80 ~~g~-~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           80 KDGQ-PVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHTTC-
T ss_pred             eCCc-EeeeEeCCCCHHHHHHHHHHHhh
Confidence            6554 44678899999999999998754

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.80  E-value=2.7e-19  Score=143.91  Aligned_cols=107  Identities=28%  Similarity=0.606  Sum_probs=96.7

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ...+.++++++|.+.++++++++|+||++||++|+.+.|.|+++++.++  +.+.|+.||++++++++++|+|.++||++
T Consensus        46 ~~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  123 (155)
T 2ppt_A           46 TGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA--GQVRLAKIDTQAHPAVAGRHRIQGIPAFI  123 (155)
T ss_dssp             CSSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTCEEEEEETTTSTHHHHHTTCCSSSEEE
T ss_pred             CCCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHcc--CCEEEEEEeCCccHHHHHHcCCCcCCEEE
Confidence            3457899999999998888999999999999999999999999999997  46999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      +|.+|. ...++.|..+.+++.+|+++..+
T Consensus       124 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          124 LFHKGR-ELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEeCCe-EEEEecCCCCHHHHHHHHHHHhc
Confidence            996554 44678999999999999998654

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.80  E-value=2.1e-19  Score=140.77  Aligned_cols=104  Identities=15%  Similarity=0.179  Sum_probs=89.6

Q ss_pred             eEEcC-hhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           25 VVVLT-EDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        25 v~~l~-~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      +..++ .++|++.+  .++++++|.|||+||++|+.+.|.++++++++.  +.+.|++||.++.++++.+|+|.+.||++
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~--~~v~f~kVDVDe~~e~a~~y~V~siPT~~  100 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIK--NFCVIYLVDITEVPDFNTMYELYDPVSVM  100 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTCCTTTTTTTCCSSEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CCcEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            45554 58899877  478899999999999999999999999999996  56999999999999999999999999999


Q ss_pred             EccCCCCCc-c-------cccCCCC-HHHHHHHHhccC
Q 018270          102 WFPKGSLEP-K-------KYEGPRS-TEALAEYVNNEG  130 (358)
Q Consensus       102 ~~~~~~~~~-~-------~~~g~~~-~~~i~~~i~~~~  130 (358)
                      +|.+|+... .       +..|..+ .+++.++|+...
T Consensus       101 fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A          101 FFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             EEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             EEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            998876431 2       6778877 899999987653

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.80  E-value=5e-19  Score=132.91  Aligned_cols=104  Identities=26%  Similarity=0.569  Sum_probs=93.5

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      +.+..+++++|.+.+ +++++++|.||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|+++
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNIDDNPETPNAYQVRSIPTLM   79 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHT--TSEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhC--CcEEEEEEECCCCHHHHHhcCCCccCEEE
Confidence            568899999999776 778999999999999999999999999999987  46999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +|.+|. ...++.|..+.+.+.+|+.+.
T Consensus        80 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           80 LVRDGK-VIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHHHHT
T ss_pred             EEeCCE-EEEEecCCCCHHHHHHHHHhc
Confidence            995554 446788999999999999764

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.79  E-value=6.4e-19  Score=132.34  Aligned_cols=105  Identities=28%  Similarity=0.549  Sum_probs=94.6

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      +.+..++.++|++.+...+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+++++++|+|.++||++
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNIDDNPETPNAYQVRSIPTLM   79 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHT--TSEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhC--CcEEEEEEECCCCHHHHHhcCCCccCEEE
Confidence            4578899999998876788999999999999999999999999999985  47999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +|++| +....+.|..+.+.+.+||++.
T Consensus        80 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           80 LVRDG-KVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEeCC-EEEEEecCCCCHHHHHHHHHhc
Confidence            99665 4566789999999999999864

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.79  E-value=2e-19  Score=138.47  Aligned_cols=110  Identities=47%  Similarity=0.922  Sum_probs=95.8

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC---CCCeEEEEEeCcccHHHHHhcCCCc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL---EDDVVVANLDADKYKDLAEKYGVSG  215 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~---~~~v~~~~vd~~~~~~l~~~~~v~~  215 (358)
                      ....+..++.++|++.+...+++++|.||++||++|+.+.|.|+++++.+..   ..++.++.+|++.++ +++  +|.+
T Consensus         5 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            3556889999999998756789999999999999999999999999999964   237999999999776 555  9999


Q ss_pred             ccEEEEEeCCCcc-eeeecCCCCHHHHHHHHHHhcCC
Q 018270          216 FPTLKFFPKGNKD-GEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       216 ~Pti~~~~~g~~~-~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      +||+++|++|++. ...+.|.++.++|.+||++.++.
T Consensus        82 ~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (121)
T 2djj_A           82 FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  118 (121)
T ss_dssp             SSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             CCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCc
Confidence            9999999988663 77899999999999999987653

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.79  E-value=9.6e-19  Score=137.61  Aligned_cols=108  Identities=27%  Similarity=0.551  Sum_probs=95.9

Q ss_pred             CCCeEEcChhhHHHHhc------------CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhH
Q 018270           22 ADDVVVLTEDNFEKEVG------------QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC   89 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~------------~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~   89 (358)
                      ...+..+++++|.+.+.            ++++++|+||++||++|+.+.|.|.++++.++  +.+.++.||++++.+++
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~   85 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYD--GQIVIYKVDTEKEQELA   85 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHH
Confidence            34688999999999884            46899999999999999999999999999987  46999999999999999


Q ss_pred             hhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270           90 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus        90 ~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      ++|+|.++|++++|+.++.. ..+.|..+.+.+.+||.+..+.
T Consensus        86 ~~~~v~~~Pt~~~~~~~G~~-~~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           86 GAFGIRSIPSILFIPMEGKP-EMAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             HHTTCCSSCEEEEECSSSCC-EEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHcCCCCCCEEEEECCCCcE-EEEeCCCCHHHHHHHHHHHhhc
Confidence            99999999999999655545 4789999999999999987554

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.79  E-value=4.7e-19  Score=140.11  Aligned_cols=108  Identities=29%  Similarity=0.443  Sum_probs=97.2

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      ...+..++.++|++.+...+++++|.||++||++|+.+.|.|.++++.+.  +++.++.||++.+.+++++|+|.++||+
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG--SSAVFGRINIATNPWTAEKYGVQGTPTF   82 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTSEEEEEETTTCHHHHHHHTCCEESEE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCcCHhHHHHCCCCcCCEE
Confidence            45688999999997776789999999999999999999999999999996  3699999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      ++|.+| +....+.|..+.+.|.+||++.+.
T Consensus        83 ~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           83 KFFCHG-RPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EEEETT-EEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEeCC-cEEEEEcCCCCHHHHHHHHHHHhc
Confidence            999776 456788999999999999987653

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.79  E-value=2.8e-19  Score=141.43  Aligned_cols=108  Identities=22%  Similarity=0.433  Sum_probs=96.9

Q ss_pred             cCCCeEEcChhhHH-HHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           21 LADDVVVLTEDNFE-KEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        21 ~~~~v~~l~~~~f~-~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ....+..++.++|. .+++++++++|+||++||++|+.+.|.|.++++.++  +.+.++.||++++++++++|+|.++||
T Consensus         4 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt   81 (140)
T 3hz4_A            4 NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG--SSAVFGRINIATNPWTAEKYGVQGTPT   81 (140)
T ss_dssp             CTTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTSEEEEEETTTCHHHHHHHTCCEESE
T ss_pred             CCcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCcCHhHHHHCCCCcCCE
Confidence            45679999999999 555789999999999999999999999999999997  469999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      +++|.+|. ...++.|..+.+.+.+||.+...
T Consensus        82 ~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           82 FKFFCHGR-PVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EEEEETTE-EEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEeCCc-EEEEEcCCCCHHHHHHHHHHHhc
Confidence            99997665 44788999999999999987653

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.79  E-value=5.6e-19  Score=142.06  Aligned_cols=108  Identities=27%  Similarity=0.601  Sum_probs=97.4

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      +..+.+++..+|++.+ ..+++++|.||++||++|+.+.|.|+++++.+.  +++.|+.||++++++++++|+|.++||+
T Consensus        46 ~~~~~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  122 (155)
T 2ppt_A           46 TGKVAGIDPAILARAE-RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA--GQVRLAKIDTQAHPAVAGRHRIQGIPAF  122 (155)
T ss_dssp             CSSEEECCHHHHHHHT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTCEEEEEETTTSTHHHHHTTCCSSSEE
T ss_pred             CCCCccCCHHHHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHcc--CCEEEEEEeCCccHHHHHHcCCCcCCEE
Confidence            4557889999999988 778999999999999999999999999999995  4699999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      ++|++| +...++.|..+.++|.+||++.++.
T Consensus       123 ~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          123 ILFHKG-RELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEEETT-EEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEeCC-eEEEEecCCCCHHHHHHHHHHHhcc
Confidence            999766 4566789999999999999988764

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.79  E-value=6.4e-19  Score=132.43  Aligned_cols=104  Identities=27%  Similarity=0.570  Sum_probs=92.6

Q ss_pred             CeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      .+..+++++|.+.+ +++++++|.||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|++++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTDESPNVASEYGIRSIPTIMV   79 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHHTCCSSCEEEE
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCCcCCEEEE
Confidence            36789999999876 678999999999999999999999999999986  469999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      |.+|. ...++.|..+.+++.+++.+..
T Consensus        80 ~~~G~-~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           80 FKGGK-KCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             ESSSS-EEEEEESCCCHHHHHHHHHHHC
T ss_pred             EeCCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            96554 4467889999999999998653

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.79  E-value=3.7e-19  Score=142.09  Aligned_cols=107  Identities=21%  Similarity=0.522  Sum_probs=97.9

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ...+..++.++|.+.+.++++++|+||++||++|+.+.|.|.++++.+.  +++.++.||++++++++++|+|.++|+++
T Consensus        37 ~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~  114 (148)
T 3p2a_A           37 DGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA--GKVRFVKVNTEAEPALSTRFRIRSIPTIM  114 (148)
T ss_dssp             CCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcC--CceEEEEEECcCCHHHHHHCCCCccCEEE
Confidence            4578999999999999899999999999999999999999999999987  56999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      +|++|. ...++.|.++.+++.+||++..+
T Consensus       115 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          115 LYRNGK-MIDMLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             EEETTE-EEEEESSCCCHHHHHHHHHHHHH
T ss_pred             EEECCe-EEEEEeCCCCHHHHHHHHHHHhc
Confidence            997654 44789999999999999998654

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.79  E-value=4.7e-19  Score=135.39  Aligned_cols=105  Identities=30%  Similarity=0.553  Sum_probs=91.5

Q ss_pred             CCCCceEcCcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          139 VPSNVVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      .+......+.++|++.+.+ .+++++|.||++||++|+.+.|.++++++.+.   ++.|+.||++++.+++++|+|.++|
T Consensus        10 ~~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~P   86 (116)
T 3qfa_C           10 HGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMP   86 (116)
T ss_dssp             --CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             CCcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCcccc
Confidence            3445666789999998843 78999999999999999999999999999884   3999999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      |+++|++| +....+.|. +.+.|.++|++.
T Consensus        87 t~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           87 TFQFFKKG-QKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             EEEEESSS-SEEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEeCC-eEEEEEcCC-CHHHHHHHHHHh
Confidence            99999766 456678888 999999999875

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.79  E-value=8.8e-19  Score=131.66  Aligned_cols=104  Identities=31%  Similarity=0.649  Sum_probs=93.8

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      +..++.++|++.+...+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+++++++|+|.++||+++|
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCCcCCEEEEE
Confidence            67889999999886778999999999999999999999999999985  4699999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++| +....+.|..+.+++.++|++.+
T Consensus        81 ~~G-~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           81 KGG-KKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSS-SEEEEEESCCCHHHHHHHHHHHC
T ss_pred             eCC-EEEEEEeCCCCHHHHHHHHHHHh
Confidence            765 45667899999999999998764

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=6.6e-19  Score=136.60  Aligned_cols=111  Identities=32%  Similarity=0.606  Sum_probs=96.7

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .++.+..++.++|++.+ . + .++|.||++||++|+.+.|.+.++++.+.. .++.++.+|++++.+++++|+|.++||
T Consensus         5 ~~~~v~~l~~~~f~~~~-~-~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt   80 (126)
T 1x5e_A            5 SSGNVRVITDENWRELL-E-G-DWMIEFYAPWCPACQNLQPEWESFAEWGED-LEVNIAKVDVTEQPGLSGRFIINALPT   80 (126)
T ss_dssp             CCCSEEECCTTTHHHHT-S-S-EEEEEEECSSCHHHHHHHHHHHHHHHHHGG-GTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCccEEecHHHHHHHh-C-C-CEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECcCCHHHHHHcCCcccCE
Confidence            45678999999999876 2 2 499999999999999999999999998852 369999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG  255 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~  255 (358)
                      +++|++|.  ..++.|..+.++|.+||++..+.....
T Consensus        81 ~~~~~~G~--~~~~~G~~~~~~l~~~l~~~~~~~~~~  115 (126)
T 1x5e_A           81 IYHCKDGE--FRRYQGPRTKKDFINFISDKEWKSIEP  115 (126)
T ss_dssp             EEEEETTE--EEECCSCCCHHHHHHHHHTCGGGGSCE
T ss_pred             EEEEeCCe--EEEeecCCCHHHHHHHHHHHhhccCCC
Confidence            99997763  578999999999999999887655443

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.6e-19  Score=157.34  Aligned_cols=114  Identities=39%  Similarity=0.678  Sum_probs=101.0

Q ss_pred             cCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCC
Q 018270          137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVS  214 (358)
Q Consensus       137 ~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~  214 (358)
                      ...+..+++|+.++|++.+.+.+++++|.|||+||++|+.+.|.|+++++.+.  +.+.++.||++  .+.++|++|+|.
T Consensus        13 ~~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~--~~~~~~~v~~d~~~~~~l~~~~~I~   90 (298)
T 3ed3_A           13 YDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD--GVVQVAAVNCDLNKNKALCAKYDVN   90 (298)
T ss_dssp             CSSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CCCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHcc--CCcEEEEEEccCccCHHHHHhCCCC
Confidence            34677899999999999996678899999999999999999999999999995  34788888887  688999999999


Q ss_pred             cccEEEEEeCCC----------------cceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          215 GFPTLKFFPKGN----------------KDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       215 ~~Pti~~~~~g~----------------~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      ++||+++|.+|+                ..+..|.|.++.+.|++|+.+.++..
T Consensus        91 ~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~  144 (298)
T 3ed3_A           91 GFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSY  144 (298)
T ss_dssp             BSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCC
T ss_pred             ccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccc
Confidence            999999999885                14688999999999999999887654

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.79  E-value=6.2e-19  Score=132.00  Aligned_cols=102  Identities=31%  Similarity=0.621  Sum_probs=91.3

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      +..++.++|++.+ ..+++++|.||++||++|+.+.|.++++++.+.  +++.++.+|++++.+++++|+|.++||+++|
T Consensus         2 v~~l~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   78 (105)
T 1nsw_A            2 TMTLTDANFQQAI-QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHHH-SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHST--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceeccHHhHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECcCCHHHHHHcCCccccEEEEE
Confidence            5678999999766 678999999999999999999999999999985  3599999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++| +....+.|..+.+.+.++|++.
T Consensus        79 ~~G-~~~~~~~G~~~~~~l~~~l~~~  103 (105)
T 1nsw_A           79 KGG-RPVKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHTTTT
T ss_pred             eCC-eEEEEEecCCCHHHHHHHHHHH
Confidence            665 5566789999999999998754

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.79  E-value=4.4e-19  Score=136.19  Aligned_cols=107  Identities=28%  Similarity=0.529  Sum_probs=94.9

Q ss_pred             cCCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           21 LADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ..+.+..+++++|.+.+ +.+++++|+||++||++|+.+.|.+.++++.+.  +++.++.+|++++++++++|+|.++|+
T Consensus        11 ~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~Pt   88 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQH--GKVVMAKVDIDDHTDLAIEYEVSAVPT   88 (119)
T ss_dssp             CCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TSSEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred             CceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCCCCHHHHHHcCCCcccE
Confidence            35678999999999876 678899999999999999999999999999886  469999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +++|.+|. ...++.|..+.+++.+|+++..
T Consensus        89 ~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           89 VLAMKNGD-VVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEeCCc-EEEEEcCCCCHHHHHHHHHHHh
Confidence            99996554 4467889999999999998653

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.79  E-value=1.1e-18  Score=139.33  Aligned_cols=109  Identities=22%  Similarity=0.561  Sum_probs=99.2

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ....+..++.++|++.+ ..+++++|.||++||++|+.+.|.|+++++.+.  +++.++.||++++.+++++|+|.++||
T Consensus        36 ~~~~v~~l~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~v~~~Pt  112 (148)
T 3p2a_A           36 FDGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA--GKVRFVKVNTEAEPALSTRFRIRSIPT  112 (148)
T ss_dssp             TCCCCEECCTTTHHHHT-TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             ccCCceecCHHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcC--CceEEEEEECcCCHHHHHHCCCCccCE
Confidence            35568899999999998 888999999999999999999999999999985  469999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      +++|++| +...++.|..+.++|.+||++.++.
T Consensus       113 ~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          113 IMLYRNG-KMIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEEEETT-EEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             EEEEECC-eEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            9999866 4666899999999999999988764

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.79  E-value=9.8e-20  Score=136.56  Aligned_cols=98  Identities=16%  Similarity=0.188  Sum_probs=77.7

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCC
Q 018270           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL  108 (358)
Q Consensus        29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~  108 (358)
                      +.++|++.++++++++|+||++||++|+.+.|.+.++++.+   +++.++.+|++++++++++|+|.++||+++|++|. 
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~---~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~-   82 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY---NYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGK-   82 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTC---TTEEEEEEEECCC---------CCCCEEEEEETTE-
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHc---CCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCe-
Confidence            46778888888999999999999999999999999999988   46999999999999999999999999999998664 


Q ss_pred             CcccccCCCCHHHHHHHHhccC
Q 018270          109 EPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       109 ~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ...++.|..+.+++.+++++..
T Consensus        83 ~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           83 EILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEEEEESSCCHHHHHHHHHTTC
T ss_pred             EEEEEeCCcCHHHHHHHHHHhh
Confidence            4478899999999999998653

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.79  E-value=1.2e-18  Score=130.67  Aligned_cols=102  Identities=32%  Similarity=0.544  Sum_probs=93.2

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      .+.+++.++|++.+  .+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+++++++|+|.++||+++
T Consensus         4 ~v~~l~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (106)
T 3die_A            4 AIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYE--GKADILKLDVDENPSTAAKYEVMSIPTLIV   79 (106)
T ss_dssp             CCEECCTTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             ceEECCHHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCcEEEEEECCcCHHHHHhCCCcccCEEEE
Confidence            47789999999988  88999999999999999999999999999985  459999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      |++| +...++.|..+.+++.++|++.
T Consensus        80 ~~~G-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           80 FKDG-QPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EETT-EEEEEEESCCCHHHHHHHHHTT
T ss_pred             EeCC-eEEEEEeCCCCHHHHHHHHHHh
Confidence            9866 4566889999999999999864

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.79  E-value=4.4e-19  Score=137.96  Aligned_cols=104  Identities=30%  Similarity=0.659  Sum_probs=93.3

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..+..++.++|.+.+ +++++++|+||++||++|+.+.|.|.++++.++  +++.++.||++++++++++|+|.++|+++
T Consensus        22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   99 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTLL   99 (128)
T ss_dssp             CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTT--TTEEEEEEETTTCCTTSGGGTCCSSSEEE
T ss_pred             cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCccCEEE
Confidence            468999999999765 778999999999999999999999999999986  46999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +|.+| ....++.|..+.+++.+|+++.
T Consensus       100 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~  126 (128)
T 2o8v_B          100 LFKNG-EVAATKVGALSKGQLKEFLDAN  126 (128)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             EEeCC-EEEEEEcCCCCHHHHHHHHHHh
Confidence            99554 3446789999999999999865

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=7.7e-19  Score=136.20  Aligned_cols=107  Identities=29%  Similarity=0.624  Sum_probs=94.7

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      ....+..+++++|++.+++  .++|+||++||++|+.+.|.|.++++.+++ ..+.++.||++++.+++++|+|.++||+
T Consensus         5 ~~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A            5 SSGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGED-LEVNIAKVDVTEQPGLSGRFIINALPTI   81 (126)
T ss_dssp             CCCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGG-GTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECcCCHHHHHHcCCcccCEE
Confidence            4567999999999988754  399999999999999999999999998863 3699999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      ++|.+|.  ..++.|.++.+++.+|+.+....
T Consensus        82 ~~~~~G~--~~~~~G~~~~~~l~~~l~~~~~~  111 (126)
T 1x5e_A           82 YHCKDGE--FRRYQGPRTKKDFINFISDKEWK  111 (126)
T ss_dssp             EEEETTE--EEECCSCCCHHHHHHHHHTCGGG
T ss_pred             EEEeCCe--EEEeecCCCHHHHHHHHHHHhhc
Confidence            9996654  37899999999999999987643

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.79  E-value=2.1e-19  Score=138.74  Aligned_cols=107  Identities=33%  Similarity=0.661  Sum_probs=90.6

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCc--------------ccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCG--------------HCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK  205 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~--------------~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~  205 (358)
                      ++.+..++.++|++.+...+++++|.||++||+              +|+.+.|.++++++.+.  +++.++.+|++++.
T Consensus         2 ~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~--~~~~~~~vd~d~~~   79 (123)
T 1oaz_A            2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP   79 (123)
T ss_dssp             CCSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCT
T ss_pred             CCccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhc--CCeEEEEEECCCCH
Confidence            356888999999987767889999999999999              99999999999999885  36999999999999


Q ss_pred             HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       206 ~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +++++|+|.++||+++|++| +...++.|..+.++|.+||++.+
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           80 GTAPKYGIRGIPTLLLFKNG-EVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TTGGGGTCCBSSEEEEEESS-SEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHHcCCCccCEEEEEECC-EEEEEEeCCCCHHHHHHHHHHHh
Confidence            99999999999999999766 45667899999999999998654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.79  E-value=8e-19  Score=133.61  Aligned_cols=107  Identities=24%  Similarity=0.512  Sum_probs=95.3

Q ss_pred             CCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      .+.+..++.++|.+.+ ..+++++|+||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~v~~~Pt~   83 (115)
T 1thx_A            6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS--DRLKVVKLEIDPNPTTVKKYKVEGVPAL   83 (115)
T ss_dssp             CCSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT--TTCEEEEEESTTCHHHHHHTTCCSSSEE
T ss_pred             cCceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhC--CcEEEEEEEcCCCHHHHHHcCCCceeEE
Confidence            3568999999999876 678999999999999999999999999999987  4599999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      ++|.+|. ...++.|..+.+++.+|+.+..+
T Consensus        84 ~~~~~G~-~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           84 RLVKGEQ-ILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEcCCE-EEEEecCCCCHHHHHHHHHHHhc
Confidence            9995554 44678899999999999987643

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.79  E-value=6.7e-19  Score=135.45  Aligned_cols=107  Identities=41%  Similarity=0.872  Sum_probs=94.5

Q ss_pred             CCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhc---CCceEEEEEeCccchhhHhhcCccCC
Q 018270           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK---AKSVLIGKVDCDEHKSLCSKYGVQGY   97 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~---~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (358)
                      ...+..++.++|.+.+ .++++++|+||++||++|+.+.|.|.++++.+++   ...+.++.+|++++. +++  +|.++
T Consensus         6 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~   82 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGF   82 (121)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSS
T ss_pred             CCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcC
Confidence            4678999999999986 7789999999999999999999999999999974   237999999999876 665  99999


Q ss_pred             CeEEEccCCCCC-cccccCCCCHHHHHHHHhccCC
Q 018270           98 PTIQWFPKGSLE-PKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        98 P~l~~~~~~~~~-~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      ||+++|++++.. ..++.|.++.+++.+|+.+..+
T Consensus        83 Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  117 (121)
T 2djj_A           83 PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  117 (121)
T ss_dssp             SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             CeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence            999999988653 5789999999999999998764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.79  E-value=3e-19  Score=139.89  Aligned_cols=113  Identities=36%  Similarity=0.762  Sum_probs=98.9

Q ss_pred             cCCCeEEcChhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           21 LADDVVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ....+..++.++|.+.+. .+++++|+||++||++|+.+.|.|.++++.+++.+.+.++.+|++++..++++|+|.++||
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   84 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT   84 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSE
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCE
Confidence            456799999999999884 5899999999999999999999999999999755579999999999999999999999999


Q ss_pred             EEEccCCCCC-ccccc-CCCCHHHHHHHHhccCCCC
Q 018270          100 IQWFPKGSLE-PKKYE-GPRSTEALAEYVNNEGGTN  133 (358)
Q Consensus       100 l~~~~~~~~~-~~~~~-g~~~~~~i~~~i~~~~~~~  133 (358)
                      +++|.+|+.. ...|. |.++.+++.+||.+.....
T Consensus        85 ~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           85 IYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             EEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             EEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            9999887643 24677 5689999999999876543

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.78  E-value=1e-18  Score=131.52  Aligned_cols=105  Identities=30%  Similarity=0.583  Sum_probs=94.0

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      .+.+++.++|++.+ ..+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+.+++++|+|.++||+++
T Consensus         2 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (109)
T 2yzu_A            2 KPIEVTDQNFDETL-GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE--GKLLVAKLDVDENPKTAMRYRVMSIPTVIL   78 (109)
T ss_dssp             CCEECCTTTHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTB--TTBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cceEccHhHHHHHh-cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh--CceEEEEEECCCCHhHHHhCCCCcCCEEEE
Confidence            47789999999776 678899999999999999999999999999985  369999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      |++| +....+.|..+.+++.+|+++.++
T Consensus        79 ~~~g-~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           79 FKDG-QPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             EETT-EEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             EeCC-cEeeeEeCCCCHHHHHHHHHHHhh
Confidence            9766 456678999999999999998765

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.78  E-value=4.8e-19  Score=136.53  Aligned_cols=107  Identities=30%  Similarity=0.609  Sum_probs=94.4

Q ss_pred             CCCeEEcChhhHHH-HhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           22 ADDVVVLTEDNFEK-EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        22 ~~~v~~l~~~~f~~-~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      .+.+..++.++|.+ +++++++++|+||++||++|+.+.|.|.++++.++  +.+.++.+|++++++++++|+|.++||+
T Consensus         2 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (122)
T 3aps_A            2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK--GKVRAGKVDCQAYPQTCQKAGIKAYPSV   79 (122)
T ss_dssp             CCCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CcchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCcCCHHHHHHcCCCccceE
Confidence            35688999999965 55788999999999999999999999999999987  4799999999999999999999999999


Q ss_pred             EEccCCCCCcccccCC----CCHHHHHHHHhccCC
Q 018270          101 QWFPKGSLEPKKYEGP----RSTEALAEYVNNEGG  131 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~----~~~~~i~~~i~~~~~  131 (358)
                      ++|.+|+. ..++.|.    ++.+.+.+|+.+...
T Consensus        80 ~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           80 KLYQYERA-KKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EEEeCCCc-cceeeccccCcCCHHHHHHHHHHHHH
Confidence            99987765 3667765    899999999987643

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.78  E-value=1.8e-18  Score=130.05  Aligned_cols=103  Identities=21%  Similarity=0.409  Sum_probs=88.5

Q ss_pred             ceEc-CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          143 VVVL-TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       143 v~~l-~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      +.++ +.++|++.+.+ .+++++|.||++||++|+.+.|.++++++.+   +++.++.+|++++.+++++|+|.++||++
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY---PQAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHC---CCcEEEEEECccCHHHHHhcCCCcccEEE
Confidence            4455 56899998864 6899999999999999999999999999998   46999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +|++| +...++.|. +.++|.+||++.+|
T Consensus        80 ~~~~G-~~~~~~~G~-~~~~l~~~l~~~lg  107 (107)
T 1gh2_A           80 FFRNK-VRIDQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEETT-EEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             EEECC-eEEEEEeCC-CHHHHHHHHHHhcC
Confidence            99876 455677884 45669999988754

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.78  E-value=7.4e-19  Score=133.27  Aligned_cols=105  Identities=30%  Similarity=0.631  Sum_probs=93.4

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..+..++.++|.+.+ +++++++|.||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|+++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   82 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLNIDENPGTAAKYGVMSIPTLN   82 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhc--CCeEEEEEEcCCCHHHHHhCCCCcccEEE
Confidence            457899999998766 678999999999999999999999999999986  46999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +|.+|. ...++.|..+.+++.+++.+..
T Consensus        83 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  110 (112)
T 1t00_A           83 VYQGGE-VAKTIVGAKPKAAIVRDLEDFI  110 (112)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHTHHHH
T ss_pred             EEeCCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            996654 4467889999999999998653

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.78  E-value=5.5e-19  Score=131.81  Aligned_cols=102  Identities=30%  Similarity=0.587  Sum_probs=92.4

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      |..++.++|++.++++++++|+||++||++|+.+.|.+.++++.++  + +.++.+|++++++++++|++.++|++++|.
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   77 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP--Q-VGFGKLNSDENPDIAARYGVMSLPTVIFFK   77 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--T-SEEEEEETTTCHHHHHHTTCCSSCEEEEEE
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcC--C-ceEEEEECCCCHHHHHhCCccccCEEEEEE
Confidence            4688999999999888999999999999999999999999999885  3 999999999999999999999999999996


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhccC
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +|. ...++.|..+.+++.+|+.+..
T Consensus        78 ~g~-~~~~~~g~~~~~~l~~~l~~~l  102 (104)
T 2e0q_A           78 DGE-PVDEIIGAVPREEIEIRIKNLL  102 (104)
T ss_dssp             TTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCe-EhhhccCCCCHHHHHHHHHHHh
Confidence            554 4468889999999999998754

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.78  E-value=1.6e-18  Score=129.63  Aligned_cols=103  Identities=29%  Similarity=0.621  Sum_probs=92.9

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      +..++.++|++.+...+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+++++++|+|.++||++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhc--CceEEEEEcCcchHHHHHhCCCCcccEEEEE
Confidence            56789999999886778999999999999999999999999999985  3599999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++| +....+.|..+.+.+.++|++.
T Consensus        80 ~~g-~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           80 KNG-ERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             ETT-EEEEEEEECCCHHHHHHHHHHH
T ss_pred             eCC-eEEEEEecCCCHHHHHHHHHhh
Confidence            766 4566788999999999999864

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.78  E-value=1.2e-18  Score=131.46  Aligned_cols=102  Identities=30%  Similarity=0.541  Sum_probs=90.3

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ......+.++|++.++++++++|+||++||++|+.+.|.+.++++.++   .+.++.+|++++++++++|+|.++|++++
T Consensus         7 ~~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~   83 (109)
T 3f3q_A            7 MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP---QADFYKLDVDELGDVAQKNEVSAMPTLLL   83 (109)
T ss_dssp             CCEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence            345667889999999999999999999999999999999999999884   48999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |++|. ...++.|. +.+++.++|.+.
T Consensus        84 ~~~G~-~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           84 FKNGK-EVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             EETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             EECCE-EEEEEeCC-CHHHHHHHHHhh
Confidence            98554 44678887 779999998754

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.78  E-value=2.6e-18  Score=130.05  Aligned_cols=105  Identities=30%  Similarity=0.555  Sum_probs=91.4

Q ss_pred             CCCceEcCcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-ccHHHHHhcCCCccc
Q 018270          140 PSNVVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFP  217 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~l~~~~~v~~~P  217 (358)
                      .+.+..++.++|++.+.+ .+++++|.||++||++|+.+.|.+.++++.+.   ++.++.+|++ .+.+++++|+|.++|
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~~v~~~P   80 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVP   80 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSBSS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC---CeEEEEEecCcchHHHHHHcCCCeee
Confidence            456889999999998854 57899999999999999999999999999884   5999999998 789999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      |++++++|. ....+.|.. .++|.++|++..
T Consensus        81 t~~~~~~G~-~~~~~~G~~-~~~l~~~l~~~~  110 (111)
T 2pu9_C           81 TFKILKENS-VVGEVTGAK-YDKLLEAIQAAR  110 (111)
T ss_dssp             EEEEESSSS-EEEEEESSC-HHHHHHHHHHHH
T ss_pred             EEEEEeCCc-EEEEEcCCC-HHHHHHHHHHhh
Confidence            998887764 455677874 899999998754

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.78  E-value=2.4e-19  Score=134.44  Aligned_cols=98  Identities=19%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  226 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~  226 (358)
                      +.++|++.+ ..+++++|.||++||++|+.+.|.+.++++.+   +++.++.+|++++++++++|+|.++||+++|++| 
T Consensus         7 ~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~---~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G-   81 (105)
T 4euy_A            7 TIEELATYI-EEQQLVLLFIKTENCGVCDVMLRKVNYVLENY---NYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNG-   81 (105)
T ss_dssp             ---CCSSST-TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTC---TTEEEEEEEECCC---------CCCCEEEEEETT-
T ss_pred             CHHHHHHHH-hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHc---CCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCC-
Confidence            456777766 67899999999999999999999999999988   3799999999999999999999999999999866 


Q ss_pred             cceeeecCCCCHHHHHHHHHHhc
Q 018270          227 KDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       227 ~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +...++.|..+.++|.++|++.+
T Consensus        82 ~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           82 KEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEEEEEESSCCHHHHHHHHHTTC
T ss_pred             eEEEEEeCCcCHHHHHHHHHHhh
Confidence            46678899999999999998653

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.78  E-value=1.8e-18  Score=128.97  Aligned_cols=103  Identities=33%  Similarity=0.615  Sum_probs=93.0

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      |.+++.++|++.+ ..+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++.+.+++++|++.++||+++|
T Consensus         1 V~~l~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   76 (104)
T 2e0q_A            1 VIHLDSKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP---QVGFGKLNSDENPDIAARYGVMSLPTVIFF   76 (104)
T ss_dssp             CEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSCEEEEE
T ss_pred             CeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcC---CceEEEEECCCCHHHHHhCCccccCEEEEE
Confidence            4578999999998 678899999999999999999999999999885   399999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      ++| +....+.|..+.+++.+|+++.++
T Consensus        77 ~~g-~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           77 KDG-EPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             ECC-eEhhhccCCCCHHHHHHHHHHHhc
Confidence            766 456678999999999999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.77  E-value=9.9e-18  Score=148.91  Aligned_cols=107  Identities=23%  Similarity=0.496  Sum_probs=96.5

Q ss_pred             CCCceEcCcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          140 PSNVVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .+.+.++|..+|++++.. .+++|+|.||++||+||+.+.|.|+++++.+.  +++.|+.||++++++++++|+|.++||
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt   83 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN--GQFILAKLDCDAEQMIAAQFGLRAIPT   83 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHT--SSSEEEEEETTTCHHHHHTTTCCSSSE
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEEeCccCHHHHHHcCCCCCCe
Confidence            356889999999998843 37999999999999999999999999999996  469999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +++|++| +....+.|..+.+.+..|+....
T Consensus        84 ~~~~~~G-~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           84 VYLFQNG-QPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEEECC-EEEEEeeCCCCHHHHHHHHHHHc
Confidence            9999866 45667999999999999999875

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.77  E-value=1.6e-18  Score=133.28  Aligned_cols=108  Identities=31%  Similarity=0.564  Sum_probs=95.6

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .+..+..++..+|.+.+...+++++|.||++||++|+.+.|.++++++.+.  +++.++.+|++.+.+++++|+|.++||
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~i~~~Pt   87 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTVAKLDVDTNPETARNFQVVSIPT   87 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHhcCCCcCCE
Confidence            455688999999998776778999999999999999999999999999985  469999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +++|++| +....+.|..+.+.|.+||++.+
T Consensus        88 ~~~~~~g-~~~~~~~G~~~~~~l~~~l~~~l  117 (121)
T 2i1u_A           88 LILFKDG-QPVKRIVGAKGKAALLRELSDVV  117 (121)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHTCSCC
T ss_pred             EEEEECC-EEEEEecCCCCHHHHHHHHHHHH
Confidence            9999866 45677899999999999987654

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.77  E-value=1.5e-18  Score=129.85  Aligned_cols=102  Identities=24%  Similarity=0.590  Sum_probs=91.2

Q ss_pred             eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        25 v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      +..++.++|.+.+ .++++++|+||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|++++|
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhc--CceEEEEEcCcchHHHHHhCCCCcccEEEEE
Confidence            6789999999976 568899999999999999999999999999987  4599999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .+|. ....+.|..+.+.+.+++++.
T Consensus        80 ~~g~-~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           80 KNGE-RKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             ETTE-EEEEEEECCCHHHHHHHHHHH
T ss_pred             eCCe-EEEEEecCCCHHHHHHHHHhh
Confidence            7554 446788999999999999754

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.77  E-value=5e-19  Score=136.85  Aligned_cols=105  Identities=30%  Similarity=0.621  Sum_probs=92.0

Q ss_pred             ccCCCeEEcChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-cchhhHhhcCccC
Q 018270           20 ALADDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQG   96 (358)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~   96 (358)
                      .....+..+++++|.+.+.  ++++++|+||++||++|+.+.|.+.++++.++   ++.++.+|++ ++++++++|+|.+
T Consensus        15 ~~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~v~~   91 (124)
T 1faa_A           15 AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRV   91 (124)
T ss_dssp             TTTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSS
T ss_pred             hcCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC---CCEEEEEecCcchHHHHHHcCCCe
Confidence            4567899999999999885  78999999999999999999999999999884   4899999998 6899999999999


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +||+++|.+|. ...++.|.. .+++.+++++.
T Consensus        92 ~Pt~~~~~~G~-~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           92 VPTFKILKENS-VVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             SSEEEEEETTE-EEEEEESSC-HHHHHHHHHHH
T ss_pred             eeEEEEEeCCc-EEEEEcCCC-HHHHHHHHHHh
Confidence            99999987665 346778876 89999998764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.77  E-value=2.1e-18  Score=132.60  Aligned_cols=108  Identities=25%  Similarity=0.519  Sum_probs=95.0

Q ss_pred             cCCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           21 LADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ....+..++.++|.+.+ +++++++|+||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|+|.++|+
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~i~~~Pt   87 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTVAKLDVDTNPETARNFQVVSIPT   87 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHhcCCCcCCE
Confidence            34578999999998765 678999999999999999999999999999986  469999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      +++|.+|. ...++.|..+.+++.+++.+...
T Consensus        88 ~~~~~~g~-~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           88 LILFKDGQ-PVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHTCSCCC
T ss_pred             EEEEECCE-EEEEecCCCCHHHHHHHHHHHHh
Confidence            99997654 44778999999999999987643

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.77  E-value=3.6e-18  Score=132.18  Aligned_cols=102  Identities=26%  Similarity=0.394  Sum_probs=91.9

Q ss_pred             CceEcCc-ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          142 NVVVLTA-DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       142 ~v~~l~~-~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      -+.+++. ++|++.+ ..+++++|.||++||++|+.+.|.+.++++.+   +++.++.+|++++.+++++|+|.++||++
T Consensus        20 mv~~l~~~~~f~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~   95 (125)
T 1r26_A           20 SVVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---PTVKFAKVDADNNSEIVSKCRVLQLPTFI   95 (125)
T ss_dssp             CCEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC---TTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEECCCHHHHHHHH-ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHC---CCCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            3788998 9999988 78899999999999999999999999999988   36999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +|++| +....+.| .+.+.|.++|.+.+
T Consensus        96 i~~~G-~~~~~~~G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           96 IARSG-KMLGHVIG-ANPGMLRQKLRDII  122 (125)
T ss_dssp             EEETT-EEEEEEES-SCHHHHHHHHHHHH
T ss_pred             EEeCC-eEEEEEeC-CCHHHHHHHHHHHh
Confidence            99776 45567788 68899999998765

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.77  E-value=1.8e-18  Score=130.02  Aligned_cols=101  Identities=22%  Similarity=0.465  Sum_probs=86.7

Q ss_pred             eEEc-ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           25 VVVL-TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        25 v~~l-~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      +..+ +.++|.+.+  +++++++|+||++||++|+.+.|.+.++++.+   +++.++.+|++++++++++|+|.++||++
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY---PQAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHC---CCcEEEEEECccCHHHHHhcCCCcccEEE
Confidence            4445 678999998  57899999999999999999999999999988   45999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +|.+|. ...++.|. +.+++.+++.+..
T Consensus        80 ~~~~G~-~~~~~~G~-~~~~l~~~l~~~l  106 (107)
T 1gh2_A           80 FFRNKV-RIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             EEETTE-EEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEECCe-EEEEEeCC-CHHHHHHHHHHhc
Confidence            997664 34678884 4566999987653

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.77  E-value=2.2e-18  Score=130.41  Aligned_cols=103  Identities=28%  Similarity=0.580  Sum_probs=90.1

Q ss_pred             CCCeEEcChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-cchhhHhhcCccCCC
Q 018270           22 ADDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYP   98 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P   98 (358)
                      ...+..++.++|.+.+.  ++++++|+||++||++|+.+.|.+.++++.++   ++.++.+|++ ++++++++|+|.++|
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~~v~~~P   80 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVP   80 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSBSS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC---CeEEEEEecCcchHHHHHHcCCCeee
Confidence            45789999999999985  58999999999999999999999999999884   4999999998 789999999999999


Q ss_pred             eEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           99 TIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |++++.+|. ...++.|.. .+++.++|.+.
T Consensus        81 t~~~~~~G~-~~~~~~G~~-~~~l~~~l~~~  109 (111)
T 2pu9_C           81 TFKILKENS-VVGEVTGAK-YDKLLEAIQAA  109 (111)
T ss_dssp             EEEEESSSS-EEEEEESSC-HHHHHHHHHHH
T ss_pred             EEEEEeCCc-EEEEEcCCC-HHHHHHHHHHh
Confidence            988886665 446778874 88999998764

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.77  E-value=1.7e-18  Score=131.30  Aligned_cols=104  Identities=27%  Similarity=0.546  Sum_probs=92.8

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      +.+....++.++|++.++++++++|+||++||++|+.+.|.+.++++.++   ++.++.+|++++++++++|+|.++|++
T Consensus         7 ~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~   83 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTF   83 (112)
T ss_dssp             --CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             ceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCEEEEEECCCCHHHHHHcCCCcccEE
Confidence            45678899999999999989999999999999999999999999999874   499999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++|.+|. ...++.|. +.+++.+++.+.
T Consensus        84 ~~~~~G~-~~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           84 KVYKNGS-SVDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             EEEETTE-EEEEEESC-CHHHHHHHHHTT
T ss_pred             EEEECCc-EEEEEeCC-CHHHHHHHHHHh
Confidence            9997654 44678898 999999999865

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.77  E-value=1.1e-18  Score=135.19  Aligned_cols=101  Identities=27%  Similarity=0.393  Sum_probs=90.9

Q ss_pred             eEEcCh-hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           25 VVVLTE-DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        25 v~~l~~-~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      +..+++ ++|++.++++++++|+||++||++|+.+.|.|.++++.+   +++.++.||++++++++++|+|.++||+++|
T Consensus        21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~   97 (125)
T 1r26_A           21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---PTVKFAKVDADNNSEIVSKCRVLQLPTFIIA   97 (125)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC---TTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHC---CCCEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            788888 999999988999999999999999999999999999988   4599999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      .+|. ....+.| .+.+++.++|.+..
T Consensus        98 ~~G~-~~~~~~G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           98 RSGK-MLGHVIG-ANPGMLRQKLRDII  122 (125)
T ss_dssp             ETTE-EEEEEES-SCHHHHHHHHHHHH
T ss_pred             eCCe-EEEEEeC-CCHHHHHHHHHHHh
Confidence            6654 4467888 68899999998653

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.77  E-value=3.4e-18  Score=129.01  Aligned_cols=100  Identities=35%  Similarity=0.601  Sum_probs=88.5

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      ....+..+|++.+ ..+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++.+.+++++|+|.++||+++|
T Consensus         9 ~~~~~~~~f~~~~-~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   84 (109)
T 3f3q_A            9 TQFKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP---QADFYKLDVDELGDVAQKNEVSAMPTLLLF   84 (109)
T ss_dssp             EECCSHHHHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cCCCCHHHHHHHH-hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            3445788999988 678999999999999999999999999999884   599999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++| +...++.|. +.+.|.++|++.
T Consensus        85 ~~G-~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           85 KNG-KEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             ETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             ECC-EEEEEEeCC-CHHHHHHHHHhh
Confidence            855 566678887 779999999865

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.76  E-value=3.6e-18  Score=145.88  Aligned_cols=114  Identities=32%  Similarity=0.620  Sum_probs=102.1

Q ss_pred             CCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          138 AVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       138 ~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      ..+..+..++.++|++.+...+++++|.||++||++|+.+.|.|.++++.+.  +++.++.||++.+.+++++|+|.++|
T Consensus         9 ~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~P   86 (222)
T 3dxb_A            9 PMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIP   86 (222)
T ss_dssp             CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCTTTGGGGTCCSBS
T ss_pred             CCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHcCCCcCC
Confidence            3567789999999999776889999999999999999999999999999986  45999999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      |+++|++| +....+.|..+.+.|.+||++.+.....
T Consensus        87 t~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~~~~~  122 (222)
T 3dxb_A           87 TLLLFKNG-EVAATKVGALSKGQLKEFLDANLAGSAM  122 (222)
T ss_dssp             EEEEEETT-EEEEEEESCCCHHHHHHHHHHHSCCSCC
T ss_pred             EEEEEECC-eEEEEeccccChHHHHHHHHhhcccccc
Confidence            99999876 4566889999999999999999875543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.76  E-value=2.8e-18  Score=145.29  Aligned_cols=110  Identities=29%  Similarity=0.620  Sum_probs=99.3

Q ss_pred             ccCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           20 ALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      .....+..++.++|...+.++++++|.||++||++|+.+.|.|.++++.++  +.+.++.||+++++++|++|+|.++||
T Consensus        94 ~~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt  171 (210)
T 3apq_A           94 DDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD--GLLRIGAVNCGDDRMLCRMKGVNSYPS  171 (210)
T ss_dssp             TTCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB--TTBEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc--CceEEEEEECCccHHHHHHcCCCcCCe
Confidence            345678999999999999889999999999999999999999999999986  569999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +++|.+|. ....+.|.++.+++.+||.+..+.
T Consensus       172 ~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~l~~  203 (210)
T 3apq_A          172 LFIFRSGM-AAVKYNGDRSKESLVAFAMQHVRS  203 (210)
T ss_dssp             EEEECTTS-CCEECCSCCCHHHHHHHHHHHHHC
T ss_pred             EEEEECCC-ceeEecCCCCHHHHHHHHHHhCcc
Confidence            99996665 458899999999999999987644

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.76  E-value=8e-19  Score=135.48  Aligned_cols=105  Identities=30%  Similarity=0.683  Sum_probs=88.5

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCCh--------------hhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCG--------------HCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS   87 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~--------------~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~   87 (358)
                      +.+.+++.++|++.+ +++++++|+||++||+              +|+.+.|.|+++++.++  +++.++.+|++++++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~--~~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPG   80 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCTT
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhc--CCeEEEEEECCCCHH
Confidence            468899999998655 7889999999999999              99999999999999886  469999999999999


Q ss_pred             hHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           88 LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        88 l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ++++|+|.++|++++|.+|. ...++.|.++.+++.+++++..
T Consensus        81 l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 TAPKYGIRGIPTLLLFKNGE-VAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TGGGGTCCBSSEEEEEESSS-EEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHcCCCccCEEEEEECCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            99999999999999995554 4468899999999999998754

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.76  E-value=1.9e-18  Score=130.94  Aligned_cols=104  Identities=26%  Similarity=0.586  Sum_probs=90.9

Q ss_pred             CCeEEc-ChhhHHHHhcC----CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCC
Q 018270           23 DDVVVL-TEDNFEKEVGQ----DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGY   97 (358)
Q Consensus        23 ~~v~~l-~~~~f~~~~~~----~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (358)
                      ..+..+ +.++|++.+.+    +++++|.||++||++|+.+.|.|.++++.++  +++.++.+|++++++++++|+|.++
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~   79 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA--GKVIFLKVDVDAVAAVAEAAGITAM   79 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTTHHHHHHHTCCBS
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCeEEEEEECCchHHHHHHcCCCcc
Confidence            346677 57899998864    8999999999999999999999999999986  3799999999999999999999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ||+++|.+|. ...++.|. +.+++.+++++..
T Consensus        80 Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~l  110 (112)
T 1ep7_A           80 PTFHVYKDGV-KADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             SEEEEEETTE-EEEEEESC-CHHHHHHHHHHHH
T ss_pred             cEEEEEECCe-EEEEEcCC-CHHHHHHHHHHHh
Confidence            9999997654 44678888 9999999998753

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.76  E-value=4.3e-18  Score=163.18  Aligned_cols=112  Identities=37%  Similarity=0.736  Sum_probs=101.9

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ..+.+..++.++|++.+ ..+++++|.||||||++|+.+.|.|+++++.+... ++.++.|||+.+.++|++|+|+++||
T Consensus        12 ~~~~v~~l~~~~f~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt   89 (504)
T 2b5e_A           12 EDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITLAQIDCTENQDLCMEHNIPGFPS   89 (504)
T ss_dssp             TTSSCEECCTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCCcEECCHHHHHHHH-hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHhcCCCcCCE
Confidence            35679999999999988 67899999999999999999999999999999643 69999999999999999999999999


Q ss_pred             EEEEeCCCcc-eeeecCCCCHHHHHHHHHHhcCCC
Q 018270          219 LKFFPKGNKD-GEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       219 i~~~~~g~~~-~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +++|++|... +..|.|.++.+.|.+|+.+.+++.
T Consensus        90 ~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~~~  124 (504)
T 2b5e_A           90 LKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPA  124 (504)
T ss_dssp             EEEEETTCTTCEEECCSCCSHHHHHHHHHHHTSCS
T ss_pred             EEEEeCCccccceeecCCCCHHHHHHHHHHhcCCc
Confidence            9999988532 789999999999999999998765

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.76  E-value=3.6e-18  Score=127.96  Aligned_cols=101  Identities=23%  Similarity=0.619  Sum_probs=89.7

Q ss_pred             eEEcCh-hhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           25 VVVLTE-DNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        25 v~~l~~-~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      +..+++ ++|.+.+.  ++++++|.||++||++|+.+.|.+.++++.++  +.+.++.+|++++++++++|++.++|+++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTFV   79 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC--CCeEEEEEeccchHHHHHHcCCCcccEEE
Confidence            467777 89999886  78999999999999999999999999999986  56999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +|.+|. ...++.| .+.+++.+++++.
T Consensus        80 ~~~~G~-~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           80 FLKNGV-KVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEETTE-EEEEEES-CCHHHHHHHHHHT
T ss_pred             EEcCCc-EEEEEcC-CCHHHHHHHHHHh
Confidence            997664 4467888 7889999998764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.76  E-value=2.5e-18  Score=132.47  Aligned_cols=108  Identities=24%  Similarity=0.520  Sum_probs=92.7

Q ss_pred             hccCCCeEEcChhhHHHHhc----CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCc
Q 018270           19 SALADDVVVLTEDNFEKEVG----QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGV   94 (358)
Q Consensus        19 ~~~~~~v~~l~~~~f~~~~~----~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i   94 (358)
                      ......+..++.++|.+.+.    .+++++|+||++||++|+.+.|.|.++++.++  + +.++.+|++++++++++|+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~-~~~~~vd~~~~~~~~~~~~v   85 (122)
T 2vlu_A            9 AVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP--N-AVFLKVDVDELKPIAEQFSV   85 (122)
T ss_dssp             ---CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T-SEEEEEETTTCHHHHHHTTC
T ss_pred             CCCCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C-cEEEEEECCCCHHHHHHcCC
Confidence            34456678889999999884    58999999999999999999999999999885  3 99999999999999999999


Q ss_pred             cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      .++|++++|.+|. ...++.|.. .+++.+++.+..+
T Consensus        86 ~~~Pt~~~~~~G~-~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           86 EAMPTFLFMKEGD-VKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             CSSSEEEEEETTE-EEEEEESSC-HHHHHHHHHHHHS
T ss_pred             CcccEEEEEeCCE-EEEEEeCcC-HHHHHHHHHHHhc
Confidence            9999999996654 446788988 9999999987643

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.76  E-value=2.3e-18  Score=133.49  Aligned_cols=110  Identities=14%  Similarity=0.167  Sum_probs=95.4

Q ss_pred             CCeEEcChhhHH-----HHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe--CccchhhHhhcCcc
Q 018270           23 DDVVVLTEDNFE-----KEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD--CDEHKSLCSKYGVQ   95 (358)
Q Consensus        23 ~~v~~l~~~~f~-----~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd--~~~~~~l~~~~~i~   95 (358)
                      ..+..++..+|+     ....++++++|+||++||++|+.+.|.+.++++.++  +.+.++.||  ++++.+++++|+|.
T Consensus         4 ~~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~~d~~~~~~~~~~v~   81 (126)
T 2l57_A            4 EGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE--GKFNIYYARLEEEKNIDLAYKYDAN   81 (126)
T ss_dssp             CCSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS--SSCEEEEEETTSSHHHHHHHHTTCC
T ss_pred             cccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc--CCeEEEEEeCCCCchHHHHHHcCCc
Confidence            345566777776     556788999999999999999999999999999987  569999999  99999999999999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCc
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNV  134 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~  134 (358)
                      ++|++++|++++....++.|..+.+++.++|++......
T Consensus        82 ~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~  120 (126)
T 2l57_A           82 IVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKEG  120 (126)
T ss_dssp             SSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCCCC
T ss_pred             ceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhcccc
Confidence            999999999666565788999999999999998766543

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.76  E-value=6.4e-18  Score=130.14  Aligned_cols=106  Identities=25%  Similarity=0.540  Sum_probs=93.6

Q ss_pred             CCCceEcCcccHHHHHhc---CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          140 PSNVVVLTADNFDEIVLD---KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~---~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      ...+..++.++|++.+..   .+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++++.+++++|+|.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~   88 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAM   88 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECCCCHHHHHHcCCCcc
Confidence            344667789999998865   68999999999999999999999999999885   399999999999999999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      ||+++|++| +...++.|.. .++|.+||++.++
T Consensus        89 Pt~~~~~~G-~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           89 PTFLFMKEG-DVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             SEEEEEETT-EEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             cEEEEEeCC-EEEEEEeCcC-HHHHHHHHHHHhc
Confidence            999999766 4566788988 9999999998765

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.76  E-value=4e-18  Score=129.30  Aligned_cols=104  Identities=28%  Similarity=0.610  Sum_probs=92.4

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .|+....++..+|++.+ ..+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++.+.+++++|+|.++||
T Consensus         7 ~~~~~~~~~~~~f~~~~-~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt   82 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPT   82 (112)
T ss_dssp             --CCEEECSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred             ceeEEEECCHHHHHHHH-ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCEEEEEECCCCHHHHHHcCCCcccE
Confidence            56677889999999998 678999999999999999999999999999874   59999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +++|++| +....+.|. +.++|.+||++.
T Consensus        83 ~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           83 FKVYKNG-SSVDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             EEEEETT-EEEEEEESC-CHHHHHHHHHTT
T ss_pred             EEEEECC-cEEEEEeCC-CHHHHHHHHHHh
Confidence            9999866 455678888 999999999864

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.76  E-value=1.9e-18  Score=137.99  Aligned_cols=102  Identities=17%  Similarity=0.267  Sum_probs=90.2

Q ss_pred             cCcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeC
Q 018270          146 LTADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK  224 (358)
Q Consensus       146 l~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~  224 (358)
                      .+.++|++.+. ..+++++|.|||+||++|+.+.|.++++++.+.  +.+.++.||++++++++++|+|.++||+++|++
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~--~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~   86 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS--KMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN   86 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTT--TTEEEEEEETTTCCHHHHHTTCCSSSEEEEEET
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc--CceEEEEEECCcCHHHHHHcCCCccCeEEEEEC
Confidence            36788999886 568999999999999999999999999999885  459999999999999999999999999999988


Q ss_pred             CCcce---------eeecC-CCCHHHHHHHHHHhcC
Q 018270          225 GNKDG---------EEYGG-GRDLEDFVSFINEKCG  250 (358)
Q Consensus       225 g~~~~---------~~~~g-~~~~~~l~~~i~~~~~  250 (358)
                      |. ..         .++.| ..+.++|.++|+....
T Consensus        87 G~-~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           87 GQ-HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             TE-EEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             Ce-EEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence            74 44         57788 8999999999988754

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.76  E-value=1.5e-18  Score=135.02  Aligned_cols=103  Identities=21%  Similarity=0.355  Sum_probs=89.2

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ..+..++.+.+.....++++++|+||++||++|+.+.|.+.++++.++  +++.++.||++++++++++|+|.++||+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~  102 (128)
T 3ul3_B           25 PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG--KRIYLLKVDLDKNESLARKFSVKSLPTIIL  102 (128)
T ss_dssp             -CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHG--GGEEEEEEEGGGCHHHHHHTTCCSSSEEEE
T ss_pred             CccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCCcCEEEE
Confidence            344445555566666789999999999999999999999999999997  579999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhc
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      |++|. ...++.|.++.+++.+++++
T Consensus       103 ~~~G~-~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          103 LKNKT-MLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EETTE-EEEEESSCCCHHHHHHHHTT
T ss_pred             EECCE-EEEEecCCCCHHHHHHHHHh
Confidence            96554 45788999999999999975

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.76  E-value=7e-18  Score=127.86  Aligned_cols=104  Identities=22%  Similarity=0.451  Sum_probs=86.4

Q ss_pred             ceEcCc-ccHHHHHh--cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          143 VVVLTA-DNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       143 v~~l~~-~~f~~~~~--~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      +.+++. ++|++.+.  ..+++++|.||++||++|+.+.|.++++++.+.. +++.++.+|++++++++++|+|.++||+
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN-SNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG-TTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC-CCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            567777 99999884  2478999999999999999999999999998642 4699999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++|++| +...++.|. ..++|.++|.+.+
T Consensus        81 ~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           81 IIIHKG-TILKELSGA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             EEEETT-EEEEEECSC-CHHHHHHHHHHHH
T ss_pred             EEEECC-EEEEEecCC-CHHHHHHHHHHHH
Confidence            999766 456677887 4557999988754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.76  E-value=2.7e-18  Score=152.58  Aligned_cols=106  Identities=25%  Similarity=0.575  Sum_probs=96.5

Q ss_pred             CCCeEEcChhhHHHHhcC--CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           22 ADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~--~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ...|.++|.++|++.+..  +++++|+||++||++|+.+.|.|+++++.++  +.+.|+.||++++++++++|+|.++||
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt   83 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN--GQFILAKLDCDAEQMIAAQFGLRAIPT   83 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHT--SSSEEEEEETTTCHHHHHTTTCCSSSE
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEEeCccCHHHHHHcCCCCCCe
Confidence            467999999999998854  8999999999999999999999999999997  569999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +++|.+|. ...++.|..+.+.+.+|+....
T Consensus        84 ~~~~~~G~-~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           84 VYLFQNGQ-PVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEEECCE-EEEEeeCCCCHHHHHHHHHHHc
Confidence            99997654 4468999999999999998875

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.75  E-value=1.1e-17  Score=129.18  Aligned_cols=105  Identities=30%  Similarity=0.605  Sum_probs=91.9

Q ss_pred             CCCCceEcCcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-ccHHHHHhcCCCcc
Q 018270          139 VPSNVVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGF  216 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~l~~~~~v~~~  216 (358)
                      ....+..++.++|++.+.. .+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++ ++.+++++|+|.++
T Consensus        16 ~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~v~~~   92 (124)
T 1faa_A           16 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVV   92 (124)
T ss_dssp             TTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSSS
T ss_pred             cCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC---CCEEEEEecCcchHHHHHHcCCCee
Confidence            4567889999999998854 67899999999999999999999999999884   5899999998 68999999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ||++++++| +...++.|.. .+++.++|++.
T Consensus        93 Pt~~~~~~G-~~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           93 PTFKILKEN-SVVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             SEEEEEETT-EEEEEEESSC-HHHHHHHHHHH
T ss_pred             eEEEEEeCC-cEEEEEcCCC-HHHHHHHHHHh
Confidence            999999877 4556677876 89999999865

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.75  E-value=1.4e-17  Score=143.94  Aligned_cols=110  Identities=42%  Similarity=0.790  Sum_probs=99.3

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .+.+..+++++|++.+ ..+++++|.||++||++|+.+.|.|.++++.+... .++.++.+|++.+.+++++|+|.++||
T Consensus        14 ~~~v~~l~~~~~~~~~-~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt   92 (241)
T 3idv_A           14 ENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPT   92 (241)
T ss_dssp             ETTEEEECTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCcEEecccCHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCE
Confidence            4668999999999988 67899999999999999999999999999998643 359999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +++|++|+  ...|.|.++.+++.+|+.+..+..
T Consensus        93 ~~~~~~g~--~~~~~g~~~~~~l~~~i~~~~~~~  124 (241)
T 3idv_A           93 IKILKKGQ--AVDYEGSRTQEEIVAKVREVSQPD  124 (241)
T ss_dssp             EEEEETTE--EEECCSCSCHHHHHHHHHHHHSTT
T ss_pred             EEEEcCCC--cccccCcccHHHHHHHHhhccCcc
Confidence            99998774  457999999999999999987754

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.75  E-value=3.6e-18  Score=127.77  Aligned_cols=96  Identities=29%  Similarity=0.638  Sum_probs=86.4

Q ss_pred             ChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           29 TEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        29 ~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      +.++|++.++  ++++++|+||++||++|+.+.|.+.++++.++   ++.++.+|++++++++++|+|.++|++++|.+|
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   83 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASESEVKSMPTFQFFKKG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST---TSEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc---CeEEEEEEhhhhHHHHHHcCCCcCcEEEEEECC
Confidence            5788999886  78999999999999999999999999999884   399999999999999999999999999999766


Q ss_pred             CCCcccccCCCCHHHHHHHHhcc
Q 018270          107 SLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       107 ~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      + ...++.|. +.+++.+++.+.
T Consensus        84 ~-~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           84 Q-KVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             E-EEEEEESS-CHHHHHHHHHHH
T ss_pred             e-EEEEEeCC-CHHHHHHHHHHh
Confidence            5 44678888 999999999764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.75  E-value=9.9e-18  Score=125.52  Aligned_cols=102  Identities=30%  Similarity=0.660  Sum_probs=89.9

Q ss_pred             ceEcCc-ccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          143 VVVLTA-DNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       143 v~~l~~-~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      +.+++. ++|++.+.+ .+++++|.||++||++|+.+.|.++++++.+.  +++.++.+|++++.+++++|+|.++||++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTFV   79 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC--CCeEEEEEeccchHHHHHHcCCCcccEEE
Confidence            456777 899998854 78999999999999999999999999999985  57999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +|++| +....+.| .+.+.+.++|++.
T Consensus        80 ~~~~G-~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           80 FLKNG-VKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEETT-EEEEEEES-CCHHHHHHHHHHT
T ss_pred             EEcCC-cEEEEEcC-CCHHHHHHHHHHh
Confidence            99876 45667888 7899999999764

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.75  E-value=1.9e-16  Score=145.41  Aligned_cols=213  Identities=14%  Similarity=0.157  Sum_probs=171.3

Q ss_pred             CCCeEEcC-hhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           22 ADDVVVLT-EDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        22 ~~~v~~l~-~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ...+..++ .++++++++ .++.++|.||++||.   ...+.|.++|..+.  +.+.|+.++   +.+++++|++.. |+
T Consensus       124 ~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~--~~~~F~~~~---~~~~~~~~~v~~-p~  194 (367)
T 3us3_A          124 EDPVELIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFH--PYIPFFATF---DSKVAKKLTLKL-NE  194 (367)
T ss_dssp             SCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHT--TTSCEEEEC---CHHHHHHHTCCT-TC
T ss_pred             CCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhc--CCcEEEEEC---CHHHHHHcCCCC-Ce
Confidence            45677775 588999887 678899999999865   66788999999987  568888876   457899999985 99


Q ss_pred             EEEccCCCCCcccccCC-CCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcC-CCcEEEEEcCCCCcccchh
Q 018270          100 IQWFPKGSLEPKKYEGP-RSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDK-SKDVLVEFYAPWCGHCKNL  177 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~-~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~  177 (358)
                      +++|+++...+..|.|. ++.++|.+||.....         ..+.+++..++.++..+. .++.++.|+.++|+.|..+
T Consensus       195 i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~---------p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  265 (367)
T 3us3_A          195 IDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRR---------STLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEF  265 (367)
T ss_dssp             EEEECTTCSSCEECSSSSCCHHHHHHHHHHTCS---------CSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHH
T ss_pred             EEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCc---------cceeecChhhHHHHHhhccCCcEEEEEEcCCChhHHHH
Confidence            99998865566889984 999999999998743         347889999998877432 4567788999999999999


Q ss_pred             hhhHHHHHHHhcCCCCeEEEEEeCcccHHH----HHhcCCC-cccEEEEEeCCCc--ceeeecC---CCCHHHHHHHHHH
Q 018270          178 APTYEKVAAAFTLEDDVVVANLDADKYKDL----AEKYGVS-GFPTLKFFPKGNK--DGEEYGG---GRDLEDFVSFINE  247 (358)
Q Consensus       178 ~~~~~~la~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~-~~Pti~~~~~g~~--~~~~~~g---~~~~~~l~~~i~~  247 (358)
                      .+.++++|+.+++++++.|+.+|++.....    .+.||+. ++|+++++...+.  ..+.+.+   ..+.++|.+|+++
T Consensus       266 ~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~  345 (367)
T 3us3_A          266 LEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLED  345 (367)
T ss_dssp             HHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHH
Confidence            999999999997554799999999977644    4569998 7999999986543  2333443   6899999999998


Q ss_pred             hcCCC
Q 018270          248 KCGTS  252 (358)
Q Consensus       248 ~~~~~  252 (358)
                      .+...
T Consensus       346 ~~~Gk  350 (367)
T 3us3_A          346 VLEGE  350 (367)
T ss_dssp             HHHTS
T ss_pred             HHcCC
Confidence            86543

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.75  E-value=3.9e-18  Score=132.17  Aligned_cols=96  Identities=17%  Similarity=0.166  Sum_probs=86.7

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe--CcccHHHHHhcCCCcccEEEEEeCCCcceeeecC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD--ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG  234 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd--~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g  234 (358)
                      ..+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|  ++.+.+++++|+|.++||+++|..+++....+.|
T Consensus        24 ~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G  101 (126)
T 2l57_A           24 KEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE--GKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQG  101 (126)
T ss_dssp             CSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS--SSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEES
T ss_pred             hCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc--CCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecC
Confidence            567899999999999999999999999999985  579999999  9999999999999999999999955566678899


Q ss_pred             CCCHHHHHHHHHHhcCCCCC
Q 018270          235 GRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       235 ~~~~~~l~~~i~~~~~~~~~  254 (358)
                      ..+.++|.++|++.++....
T Consensus       102 ~~~~~~l~~~l~~~~~~~~~  121 (126)
T 2l57_A          102 LMRKNNIETILNSLGVKEGH  121 (126)
T ss_dssp             CCCHHHHHHHHHHHCCCCCC
T ss_pred             CCCHHHHHHHHHHHhccccc
Confidence            99999999999998876654

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.75  E-value=4.3e-18  Score=129.05  Aligned_cols=103  Identities=17%  Similarity=0.356  Sum_probs=86.3

Q ss_pred             eEEcCh-hhHHHHhcC---CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           25 VVVLTE-DNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        25 v~~l~~-~~f~~~~~~---~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      +..+++ ++|++.+.+   +++++|+||++||++|+.+.|.+.++++.++. +.+.++.+|++++++++++|+|.++||+
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN-SNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG-TTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC-CCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            567787 999999965   89999999999999999999999999998643 4599999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ++|.+|. ...++.|. ..+++.+++.+..
T Consensus        81 ~~~~~G~-~~~~~~G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           81 IIIHKGT-ILKELSGA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             EEEETTE-EEEEECSC-CHHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEecCC-CHHHHHHHHHHHH
Confidence            9997554 44677887 4567999987653

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.75  E-value=1.3e-17  Score=144.55  Aligned_cols=115  Identities=26%  Similarity=0.527  Sum_probs=99.3

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC-CCCeEEEEEeC--cccHHHHHhcCCCc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDA--DKYKDLAEKYGVSG  215 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~-~~~v~~~~vd~--~~~~~l~~~~~v~~  215 (358)
                      ..+.+..++..+|++.+.+.+++++|.|||+||++|+.+.|.|+++++.+.. ...+.++.||+  +.+.+++++|+|.+
T Consensus        10 ~~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~   89 (244)
T 3q6o_A           10 PSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG   89 (244)
T ss_dssp             TTSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCS
T ss_pred             CCCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCc
Confidence            4567999999999999877779999999999999999999999999999964 23799999999  67899999999999


Q ss_pred             ccEEEEEeCCCcc----eeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          216 FPTLKFFPKGNKD----GEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       216 ~Pti~~~~~g~~~----~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      +||+++|.+|++.    ...+.| .+.+.|.++|.+.+.....
T Consensus        90 ~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~  131 (244)
T 3q6o_A           90 FPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHD  131 (244)
T ss_dssp             SSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTT
T ss_pred             cCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccc
Confidence            9999999986542    234555 7999999999999876653

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.75  E-value=5.9e-19  Score=168.27  Aligned_cols=107  Identities=41%  Similarity=0.782  Sum_probs=98.0

Q ss_pred             CceEcCcccHHHHHhcCC---CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          142 NVVVLTADNFDEIVLDKS---KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~---~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .+..|+.++|++.+ ..+   ++++|.||||||++|+.+.|.|+++++.+..  .+.++.|||+.+.++|++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt   78 (481)
T 3f8u_A            2 DVLELTDDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKVDCTANTNTCNKYGVSGYPT   78 (481)
T ss_dssp             CCEEECTTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCCEEEEETTTCHHHHHHTTCCEESE
T ss_pred             ceEEecHHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcC--ceEEEEEECCCCHHHHHhcCCCCCCE
Confidence            57889999999998 455   8999999999999999999999999999963  49999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +++|++| ..+..|.|.++.+.|.+|+.+++++.
T Consensus        79 l~~~~~g-~~~~~~~G~~~~~~l~~~~~~~~~~~  111 (481)
T 3f8u_A           79 LKIFRDG-EEAGAYDGPRTADGIVSHLKKQAGPA  111 (481)
T ss_dssp             EEEEETT-EEEEECCSCSSHHHHHHHHHHHTSCS
T ss_pred             EEEEeCC-ceeeeecCccCHHHHHHHHHhhcccC
Confidence            9999887 45788999999999999999998765

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.75  E-value=2.1e-18  Score=130.36  Aligned_cols=102  Identities=24%  Similarity=0.359  Sum_probs=89.5

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      +..++.++| +.+.++++++|.||++||++|+.+.|.+.++++.+   +++.++.+|++++++++++|+|.++||+++|.
T Consensus         5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   80 (110)
T 2l6c_A            5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA---PQVAISSVDSEARPELMKELGFERVPTLVFIR   80 (110)
T ss_dssp             SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTC---TTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHC---CCcEEEEEcCcCCHHHHHHcCCcccCEEEEEE
Confidence            456788999 77778899999999999999999999999999887   46899999999999999999999999999996


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      +|. ...++.|..+.+++.+++....+
T Consensus        81 ~G~-~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           81 DGK-VAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             SSS-EEEEEESCCCHHHHHHHHHTC--
T ss_pred             CCE-EEEEEcCCCCHHHHHHHHHHHhh
Confidence            554 45788999999999999998754

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.75  E-value=8.8e-18  Score=127.22  Aligned_cols=105  Identities=25%  Similarity=0.623  Sum_probs=91.1

Q ss_pred             CceEc-CcccHHHHHhc-C--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          142 NVVVL-TADNFDEIVLD-K--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       142 ~v~~l-~~~~f~~~~~~-~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      .+..+ +.++|++.+.. .  +++++|.||++||++|+.+.|.++++++.+.  +++.++.+|++.+.+++++|+|.++|
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P   80 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA--GKVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCeEEEEEECCchHHHHHHcCCCccc
Confidence            45667 56889998843 3  7899999999999999999999999999985  37999999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      |+++|++| +...++.|. +.++|.++|++.+.
T Consensus        81 t~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           81 TFHVYKDG-VKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETT-EEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             EEEEEECC-eEEEEEcCC-CHHHHHHHHHHHhc
Confidence            99999866 455678888 99999999987653

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.75  E-value=5.8e-18  Score=144.57  Aligned_cols=109  Identities=28%  Similarity=0.663  Sum_probs=98.2

Q ss_pred             cCCCeEEcChhhHHHH-hcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           21 LADDVVVLTEDNFEKE-VGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~-~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ....+..+|.++|.+. ++++++++|+||++||++|+.+.|.|.++++.++  +.+.++.||++++++++++|+|.++||
T Consensus        10 ~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~Pt   87 (222)
T 3dxb_A           10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPT   87 (222)
T ss_dssp             CSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCTTTGGGGTCCSBSE
T ss_pred             CCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHcCCCcCCE
Confidence            4567899999999985 5788999999999999999999999999999997  459999999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +++|++|. ...++.|.++.+++.+|+.+....
T Consensus        88 ~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~~  119 (222)
T 3dxb_A           88 LLLFKNGE-VAATKVGALSKGQLKEFLDANLAG  119 (222)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             EEEEECCe-EEEEeccccChHHHHHHHHhhccc
Confidence            99998665 446889999999999999987654

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.75  E-value=7.5e-18  Score=128.79  Aligned_cols=101  Identities=27%  Similarity=0.633  Sum_probs=89.3

Q ss_pred             CceEcCc-ccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          142 NVVVLTA-DNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       142 ~v~~l~~-~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      .+.+++. ++|++.+.+ .+++++|.||++||++|+.+.|.++++++.+    ++.++.+|++++.+++++|+|.++||+
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~   89 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTF   89 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccHHHHHHcCCCccceE
Confidence            3778887 999998854 7889999999999999999999999999877    689999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++|++| +....+.| .+.++|.++|++.
T Consensus        90 ~~~~~G-~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           90 IAIKNG-EKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             EEEETT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred             EEEeCC-cEEEEEeC-CCHHHHHHHHHHh
Confidence            999876 45667788 6899999999865

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.75  E-value=4.7e-18  Score=129.46  Aligned_cols=100  Identities=14%  Similarity=0.234  Sum_probs=84.2

Q ss_pred             CCceEcCcccHHHHHhcCCC--cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          141 SNVVVLTADNFDEIVLDKSK--DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~--~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ..+.+++.++|.+.+.+.++  +++|.||++||++|+.+.|.++++|+.+.   ++.|++||+++.   +++|+|.++||
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~---~v~f~kvd~d~~---~~~~~v~~~PT   76 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAIVNSC---IQHYHDNCLPT   76 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT---TSEEEEEEGGGT---STTCCGGGCSE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HHHCCCCCCCE
Confidence            35778999999998855544  89999999999999999999999999983   699999999875   58999999999


Q ss_pred             EEEEeCCCcceeeecCC-------CCHHHHHHHHHH
Q 018270          219 LKFFPKGNKDGEEYGGG-------RDLEDFVSFINE  247 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~-------~~~~~l~~~i~~  247 (358)
                      +++|++|. ...++.|.       .+.+++..+|.+
T Consensus        77 ~~~fk~G~-~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           77 IFVYKNGQ-IEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             EEEEETTE-EEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             EEEEECCE-EEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            99999884 45555553       478888888865

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.75  E-value=5.5e-18  Score=128.09  Aligned_cols=102  Identities=22%  Similarity=0.381  Sum_probs=88.3

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      +..++.++| +.+ ..+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++.+.+++++|+|.++||+++|
T Consensus         5 ~~~~~~~~f-~~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   79 (110)
T 2l6c_A            5 RDITTEAGM-AHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP---QVAISSVDSEARPELMKELGFERVPTLVFI   79 (110)
T ss_dssp             SBCGGGCSH-HHH-TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT---TSCEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             eecCCHHHH-HHH-HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC---CcEEEEEcCcCCHHHHHHcCCcccCEEEEE
Confidence            345788999 555 467899999999999999999999999998873   689999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      ++| +...++.|..+.++|.+++....+
T Consensus        80 ~~G-~~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           80 RDG-KVAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             ESS-SEEEEEESCCCHHHHHHHHHTC--
T ss_pred             ECC-EEEEEEcCCCCHHHHHHHHHHHhh
Confidence            766 456788999999999999987644

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.75  E-value=9e-18  Score=142.16  Aligned_cols=111  Identities=26%  Similarity=0.533  Sum_probs=99.9

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ....+..++..+|+..+ ..+++++|.||++||++|+.+.|.|.++++.+.  +++.++.||++.+.+++++|+|.++||
T Consensus        95 ~~~~v~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt  171 (210)
T 3apq_A           95 DDPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD--GLLRIGAVNCGDDRMLCRMKGVNSYPS  171 (210)
T ss_dssp             TCTTSEECCHHHHHHHH-HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB--TTBEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCceEEecHHHHHHHH-ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc--CceEEEEEECCccHHHHHHcCCCcCCe
Confidence            45568899999999988 778999999999999999999999999999985  469999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      +++|++| +....+.|..+.+.|.+||++.++...
T Consensus       172 ~~~~~~G-~~~~~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          172 LFIFRSG-MAAVKYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             EEEECTT-SCCEECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             EEEEECC-CceeEecCCCCHHHHHHHHHHhCcccc
Confidence            9999666 457789999999999999999876543

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=9.5e-19  Score=137.82  Aligned_cols=105  Identities=24%  Similarity=0.472  Sum_probs=90.2

Q ss_pred             CCCCceEcCcccHHHHHhcCC-CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC---
Q 018270          139 VPSNVVVLTADNFDEIVLDKS-KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS---  214 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~-~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~---  214 (358)
                      .+..+..++..+|++.+.... ++++|.||++||++|+.+.|.|.++++.+.. .++.++.||++++++++++|+|.   
T Consensus         5 ~~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~~   83 (137)
T 2dj0_A            5 SSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKVDVGRYTDVSTRYKVSTSP   83 (137)
T ss_dssp             CCSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS-SSCEEEECCTTTCHHHHHHTTCCCCS
T ss_pred             CCceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCccCHHHHHHccCcccC
Confidence            456789999999999885444 4899999999999999999999999999952 47999999999999999999999   


Q ss_pred             ---cccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          215 ---GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       215 ---~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                         ++||+++|++| +...++.|..+.+.|.+|+
T Consensus        84 ~~~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l  116 (137)
T 2dj0_A           84 LTKQLPTLILFQGG-KEAMRRPQIDKKGRAVSWT  116 (137)
T ss_dssp             SSSCSSEEEEESSS-SEEEEESCBCSSSCBCCCC
T ss_pred             CcCCCCEEEEEECC-EEEEEecCcCchHHHHHHH
Confidence               99999999776 4566788877777766665

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.75  E-value=2.9e-18  Score=131.32  Aligned_cols=103  Identities=16%  Similarity=0.255  Sum_probs=86.9

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC----ccchhhHhhcCccCC
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC----DEHKSLCSKYGVQGY   97 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~----~~~~~l~~~~~i~~~   97 (358)
                      ...+..++.++|.+.+.++++++|+||++||++|+.+.|.+.++++.++  ..+.++.++.    +...+++++|+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (118)
T 1zma_A           11 IKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK--AHIYFINSEEPSQLNDLQAFRSRYGIPTV   88 (118)
T ss_dssp             TTTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC--CCCEEEETTCGGGHHHHHHHHHHHTCCSS
T ss_pred             HhhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcC--CeEEEEECCCcCcHHHHHHHHHHcCCCCC
Confidence            4578899999999999888999999999999999999999999999875  4466653332    334688999999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHh
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~  127 (358)
                      ||+++|.+|. ...++.|..+.+++.+|+.
T Consensus        89 Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           89 PGFVHITDGQ-INVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             CEEEEEETTE-EEEECCTTCCHHHHHHHHT
T ss_pred             CeEEEEECCE-EEEEecCCCCHHHHHHHhh
Confidence            9999998665 3478899999999999986

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.74  E-value=5.2e-18  Score=129.70  Aligned_cols=102  Identities=24%  Similarity=0.552  Sum_probs=89.7

Q ss_pred             CCCeEEcCh-hhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           22 ADDVVVLTE-DNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        22 ~~~v~~l~~-~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      ++.+..+++ ++|.+.++  ++++++|+||++||++|+.+.|.+.++++.+    ++.++.+|++++++++++|+|.++|
T Consensus        12 m~~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~P   87 (117)
T 2xc2_A           12 MSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMP   87 (117)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             hheeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccHHHHHHcCCCccc
Confidence            445888988 99999886  7899999999999999999999999999876    5899999999999999999999999


Q ss_pred             eEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           99 TIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |+++|.+|. ...++.| .+.+++.+++++.
T Consensus        88 t~~~~~~G~-~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           88 TFIAIKNGE-KVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             EEEEEETTE-EEEEEES-SCHHHHHHHHHHH
T ss_pred             eEEEEeCCc-EEEEEeC-CCHHHHHHHHHHh
Confidence            999997654 4467788 6889999998754

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.74  E-value=9.3e-18  Score=132.59  Aligned_cols=106  Identities=27%  Similarity=0.510  Sum_probs=81.3

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      ..+.+++.++|+..+...++ ++|.||++||++|+.+.|.++++++.+.  +++.|+.+|++.+.+++++|+|.++||++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  109 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHA--GRLKVVKVNVDEHPGLAARYGVRSVPTLV  109 (140)
T ss_dssp             ----------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHCCCCccCEEE
Confidence            45778899999998855556 9999999999999999999999999985  36999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +|++| +....+.|..+.++|.+||++.++
T Consensus       110 ~~~~G-~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          110 LFRRG-APVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEeCC-cEEEEEeCCCCHHHHHHHHHHHHc
Confidence            99766 456678999999999999998764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=5.3e-19  Score=139.26  Aligned_cols=107  Identities=22%  Similarity=0.453  Sum_probs=91.5

Q ss_pred             cCCCeEEcChhhHHHHhcCC--CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc---
Q 018270           21 LADDVVVLTEDNFEKEVGQD--RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ---   95 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~--~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~---   95 (358)
                      +...+..++.++|++.+.++  ++++|+||++||++|+.+.|.|.++++.+++ ..+.++.||++++++++++|+|.   
T Consensus         5 ~~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~~   83 (137)
T 2dj0_A            5 SSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKVDVGRYTDVSTRYKVSTSP   83 (137)
T ss_dssp             CCSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS-SSCEEEECCTTTCHHHHHHTTCCCCS
T ss_pred             CCceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCccCHHHHHHccCcccC
Confidence            45678999999999988443  4899999999999999999999999999863 36999999999999999999999   


Q ss_pred             ---CCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           96 ---GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        96 ---~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                         ++||+++|.+|. ...++.|..+.+.+.+|+.+.
T Consensus        84 ~~~~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~  119 (137)
T 2dj0_A           84 LTKQLPTLILFQGGK-EAMRRPQIDKKGRAVSWTFSE  119 (137)
T ss_dssp             SSSCSSEEEEESSSS-EEEEESCBCSSSCBCCCCCCH
T ss_pred             CcCCCCEEEEEECCE-EEEEecCcCchHHHHHHHhcc
Confidence               999999997665 446788888877777776543

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.74  E-value=2e-17  Score=127.80  Aligned_cols=106  Identities=25%  Similarity=0.541  Sum_probs=91.8

Q ss_pred             CCCCceEc-CcccHHHHHhc---CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC
Q 018270          139 VPSNVVVL-TADNFDEIVLD---KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS  214 (358)
Q Consensus       139 ~~~~v~~l-~~~~f~~~~~~---~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~  214 (358)
                      ....+.++ +.++|++.+..   .+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++++.+++++|+|.
T Consensus        14 ~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~   90 (124)
T 1xfl_A           14 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQ   90 (124)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCC
T ss_pred             CCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHHcCCC
Confidence            44557777 67899998854   58899999999999999999999999999984   6999999999999999999999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++||+++|++| +....+.| .+.++|.++|++.+
T Consensus        91 ~~Pt~~~~~~G-~~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           91 AMPTFMFLKEG-KILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             SSSEEEEEETT-EEEEEEES-CCHHHHHHHHHHHC
T ss_pred             ccCEEEEEECC-EEEEEEeC-CCHHHHHHHHHHhc
Confidence            99999999766 45566778 58999999998754

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.74  E-value=9e-18  Score=125.30  Aligned_cols=99  Identities=31%  Similarity=0.649  Sum_probs=87.1

Q ss_pred             EEcCh-hhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           26 VVLTE-DNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        26 ~~l~~-~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ..+++ ++|++.++  ++++++|.||++||++|+.+.|.+.++++.++   .+.++.+|++++++++++|+|.++|++++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMPTFVF   78 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCHHHHHHcCCccccEEEE
Confidence            45666 88999886  78999999999999999999999999999874   69999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |.+|. ...++.| .+.+++.+++++.
T Consensus        79 ~~~g~-~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           79 IKDGK-EVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             EETTE-EEEEEES-SCHHHHHHHHHHH
T ss_pred             EeCCc-EEEEEeC-CCHHHHHHHHHhh
Confidence            98654 4467788 6899999998754

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.74  E-value=5.2e-18  Score=133.18  Aligned_cols=106  Identities=21%  Similarity=0.326  Sum_probs=92.7

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC---------cccHHHHH
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------DKYKDLAE  209 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~---------~~~~~l~~  209 (358)
                      .+..+..++.++|++.+. .  +++|.||++||++|+.+.|.+.++++.+.    +.++.||+         +.+.++++
T Consensus        14 ~~~~v~~l~~~~~~~~~~-~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~~~~d~~~~l~~   86 (135)
T 3emx_A           14 EDGRLIYITPEEFRQLLQ-G--DAILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGERELSAARLEMN   86 (135)
T ss_dssp             ETTEEEECCHHHHHHHHT-S--SEEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             ccCceeecCHHHHHHHhC-C--cEEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhhhhhhhhHHHHH
Confidence            355688899999999983 3  99999999999999999999999999873    88999999         88899999


Q ss_pred             hcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          210 KYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       210 ~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +|+|.++||+++|++| +...++.|..+.+.+..++++..+..
T Consensus        87 ~~~v~~~Pt~~~~~~G-~~v~~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           87 KAGVEGTPTLVFYKEG-RIVDKLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             HHTCCSSSEEEEEETT-EEEEEEESCCCHHHHHHHHHHHC---
T ss_pred             HcCCceeCeEEEEcCC-EEEEEEeCCCCHHHHHHHHHHHhCCC
Confidence            9999999999999966 56778999999999999999887654

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.74  E-value=9.1e-18  Score=134.00  Aligned_cols=100  Identities=14%  Similarity=0.248  Sum_probs=88.6

Q ss_pred             EcChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           27 VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        27 ~l~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      ..+.++|++.+  +++++++|+|||+||++|+.+.|.++++++.++  +.+.++.||++++++++++|+|.++||+++|.
T Consensus         8 i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~--~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~   85 (149)
T 3gix_A            8 LTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS--KMAAIYLVDVDQTAVYTQYFDISYIPSTVFFF   85 (149)
T ss_dssp             ECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTT--TTEEEEEEETTTCCHHHHHTTCCSSSEEEEEE
T ss_pred             cCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc--CceEEEEEECCcCHHHHHHcCCCccCeEEEEE
Confidence            34678999988  568999999999999999999999999999886  45999999999999999999999999999887


Q ss_pred             CCCCCc---------ccccC-CCCHHHHHHHHhcc
Q 018270          105 KGSLEP---------KKYEG-PRSTEALAEYVNNE  129 (358)
Q Consensus       105 ~~~~~~---------~~~~g-~~~~~~i~~~i~~~  129 (358)
                      +|. ..         .++.| ..+.+++.++++..
T Consensus        86 ~G~-~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~  119 (149)
T 3gix_A           86 NGQ-HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  119 (149)
T ss_dssp             TTE-EEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred             CCe-EEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence            764 43         57788 89999999999875

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.74  E-value=7.2e-18  Score=133.24  Aligned_cols=106  Identities=32%  Similarity=0.584  Sum_probs=80.0

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ..+.+++.++|.+.+.+++.++|+||++||++|+.+.|.|.++++.++  +++.|+.||++++++++++|+|.++||+++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  110 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHA--GRLKVVKVNVDEHPGLAARYGVRSVPTLVL  110 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHCCCCccCEEEE
Confidence            568899999999988544449999999999999999999999999987  469999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      |.+|. ....+.|..+.+++.+||.+...
T Consensus       111 ~~~G~-~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          111 FRRGA-PVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EETTE-EEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EeCCc-EEEEEeCCCCHHHHHHHHHHHHc
Confidence            97654 44678999999999999987643

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.73  E-value=1.5e-17  Score=124.30  Aligned_cols=97  Identities=32%  Similarity=0.655  Sum_probs=86.4

Q ss_pred             CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270          147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       147 ~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g  225 (358)
                      +.++|++.+.. ++++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++++++++++|+|.++||+++|++|
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   83 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASESEVKSMPTFQFFKKG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST---TSEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc---CeEEEEEEhhhhHHHHHHcCCCcCcEEEEEECC
Confidence            56788888843 58899999999999999999999999999884   499999999999999999999999999999776


Q ss_pred             CcceeeecCCCCHHHHHHHHHHh
Q 018270          226 NKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       226 ~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                       +....+.|. +.+.+.++|++.
T Consensus        84 -~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           84 -QKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             -EEEEEEESS-CHHHHHHHHHHH
T ss_pred             -eEEEEEeCC-CHHHHHHHHHHh
Confidence             456678888 999999999875

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.73  E-value=2.6e-17  Score=122.73  Aligned_cols=100  Identities=30%  Similarity=0.682  Sum_probs=87.6

Q ss_pred             eEcCc-ccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          144 VVLTA-DNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       144 ~~l~~-~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      .+++. ++|++.+.+ .+++++|.||++||++|+.+.|.+.++++.+.   ++.++.+|++.+++++++|+|.++||+++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMPTFVF   78 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCHHHHHHcCCccccEEEE
Confidence            45665 889998843 68899999999999999999999999999884   69999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      |++| +...++.| .+.+.|.+||++.
T Consensus        79 ~~~g-~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           79 IKDG-KEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             EETT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred             EeCC-cEEEEEeC-CCHHHHHHHHHhh
Confidence            9866 45567778 6899999999865

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.73  E-value=7.4e-18  Score=132.98  Aligned_cols=106  Identities=14%  Similarity=0.233  Sum_probs=79.2

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCC--CcccchhhhhHHHHHHHhcCCCCeE--EEEEeCcccHHHHHhcCCCccc
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVV--VANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~--C~~c~~~~~~~~~la~~~~~~~~v~--~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      .+..++.++|++.+ ..++.++|.|+++|  |++|+.+.|.|+++++.+   +++.  +++||++++++++++|+|.++|
T Consensus        18 ~~~~l~~~~f~~~i-~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~---~~v~~~~~~Vd~d~~~~la~~~~V~~iP   93 (142)
T 2es7_A           18 GWQPVEASTVDDWI-KRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF---PQFDWQVAVADLEQSEAIGDRFNVRRFP   93 (142)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTC---TTSCCEEEEECHHHHHHHHHTTTCCSSS
T ss_pred             cCcccccccHHHHH-HhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh---cccceeEEEEECCCCHHHHHhcCCCcCC
Confidence            46788999999988 45567888999887  999999999999999988   3577  9999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      |+++|++| +...++.|..+.++|.+||++.++..
T Consensus        94 T~~~fk~G-~~v~~~~G~~~~~~l~~~i~~~l~~~  127 (142)
T 2es7_A           94 ATLVFTDG-KLRGALSGIHPWAELLTLMRSIVDTP  127 (142)
T ss_dssp             EEEEESCC-----CEESCCCHHHHHHHHHHHHC--
T ss_pred             eEEEEeCC-EEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            99999766 46678999999999999999887644

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.73  E-value=1.4e-17  Score=128.67  Aligned_cols=104  Identities=28%  Similarity=0.534  Sum_probs=89.9

Q ss_pred             cCCCeEEc-ChhhHHHHhc----CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc
Q 018270           21 LADDVVVL-TEDNFEKEVG----QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ   95 (358)
Q Consensus        21 ~~~~v~~l-~~~~f~~~~~----~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~   95 (358)
                      ....+..+ +.++|++.+.    ++++++|+||++||++|+.+.|.|.++++.++   ++.++.+|++++++++++|+|.
T Consensus        14 ~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~   90 (124)
T 1xfl_A           14 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQ   90 (124)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCC
T ss_pred             CCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHHcCCC
Confidence            34567777 7789998884    48999999999999999999999999999884   6999999999999999999999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++||+++|.+|. ...++.| .+.+++.++|.+.
T Consensus        91 ~~Pt~~~~~~G~-~~~~~~G-~~~~~l~~~l~~~  122 (124)
T 1xfl_A           91 AMPTFMFLKEGK-ILDKVVG-AKKDELQSTIAKH  122 (124)
T ss_dssp             SSSEEEEEETTE-EEEEEES-CCHHHHHHHHHHH
T ss_pred             ccCEEEEEECCE-EEEEEeC-CCHHHHHHHHHHh
Confidence            999999996654 4467778 5899999999765

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.73  E-value=9e-18  Score=127.77  Aligned_cols=100  Identities=28%  Similarity=0.491  Sum_probs=86.4

Q ss_pred             CeEEcC-hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVLT-EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l~-~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      .+..++ .++|+++++++++++|.||++||++|+.+.|.+.++++.++  + +.++.+|++++++++++|+|.++|++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~--~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   89 (114)
T 2oe3_A           13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP--D-VRFVKCDVDESPDIAKECEVTAMPTFVL   89 (114)
T ss_dssp             GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT--T-SEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             heeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C-CEEEEEECCCCHHHHHHCCCCcccEEEE
Confidence            344444 56688888889999999999999999999999999999885  3 9999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhc
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      |.+|. ...++.|.. .+++.++|.+
T Consensus        90 ~~~G~-~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           90 GKDGQ-LIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EETTE-EEEEEESSC-HHHHHHHHHT
T ss_pred             EeCCe-EEEEEeCCC-HHHHHHHHHh
Confidence            96654 446788988 9999999874

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.73  E-value=2.9e-17  Score=131.82  Aligned_cols=110  Identities=22%  Similarity=0.453  Sum_probs=93.9

Q ss_pred             CCCceEcC-cccHHHHHhcC-CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          140 PSNVVVLT-ADNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       140 ~~~v~~l~-~~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      ...+..++ .++|++.+... +++++|.||++||++|+.+.|.|.++++.+   +++.|+.||++++.+++++|+|.++|
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~~~~~~l~~~~~v~~~P   87 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVPEVSEKYEISSVP   87 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHc---CCeEEEEEECCCCHHHHHHcCCCCCC
Confidence            34577776 58999888432 889999999999999999999999999987   47999999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      |+++|.+| +....+.| .+.++|.+||++.++....
T Consensus        88 t~~~~~~G-~~~~~~~G-~~~~~l~~~i~~~l~~~~~  122 (153)
T 2wz9_A           88 TFLFFKNS-QKIDRLDG-AHAPELTKKVQRHASSGSF  122 (153)
T ss_dssp             EEEEEETT-EEEEEEES-SCHHHHHHHHHHHSCTTSS
T ss_pred             EEEEEECC-EEEEEEeC-CCHHHHHHHHHHHhccccC
Confidence            99999955 45566777 5788999999999876543

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.73  E-value=5.2e-18  Score=133.17  Aligned_cols=104  Identities=20%  Similarity=0.314  Sum_probs=92.6

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC---------ccchhhHhhc
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC---------DEHKSLCSKY   92 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~---------~~~~~l~~~~   92 (358)
                      ...+..++.++|++.+++  +++|+||++||++|+.+.|.|.++++.++    +.++.||+         +++++++++|
T Consensus        15 ~~~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~~~~d~~~~l~~~~   88 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGERELSAARLEMNKA   88 (135)
T ss_dssp             TTEEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             cCceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhhhhhhhhHHHHHHc
Confidence            457889999999999976  99999999999999999999999998873    88999999         8889999999


Q ss_pred             CccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270           93 GVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus        93 ~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +|.++||+++|++|. ...++.|..+.+.+.+++++..+.
T Consensus        89 ~v~~~Pt~~~~~~G~-~v~~~~G~~~~~~~~~~i~~~~~~  127 (135)
T 3emx_A           89 GVEGTPTLVFYKEGR-IVDKLVGATPWSLKVEKAREIYGG  127 (135)
T ss_dssp             TCCSSSEEEEEETTE-EEEEEESCCCHHHHHHHHHHHC--
T ss_pred             CCceeCeEEEEcCCE-EEEEEeCCCCHHHHHHHHHHHhCC
Confidence            999999999999654 447889999999999999987654

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.73  E-value=2.5e-17  Score=140.93  Aligned_cols=105  Identities=22%  Similarity=0.431  Sum_probs=94.8

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEEC--CCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-----CccchhhHhhcCc
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYA--PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-----CDEHKSLCSKYGV   94 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya--~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-----~~~~~~l~~~~~i   94 (358)
                      ...+..+|+.+|++++..+++++|.|||  |||+    +.|.|+++++.+.+.+.|.|+.||     |+.++++|++|+|
T Consensus         4 ~~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            4 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             CTTCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCCceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            4578999999999999888999999999  9999    999999999999755679999999     5568999999999


Q ss_pred             c--CCCeEEEccCCC-CCcccccCCCCHHHHHHHHhccC
Q 018270           95 Q--GYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        95 ~--~~P~l~~~~~~~-~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      .  ++||+++|.+|. ..+..|.|.++.+.|.+|+.+..
T Consensus        80 ~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            9  999999999886 35689999999999999999764

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.73  E-value=5.3e-18  Score=131.84  Aligned_cols=88  Identities=20%  Similarity=0.421  Sum_probs=81.2

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      ..+++++|.||++||++|+.+.|.++++++.+.  +++.++.||++.+.+++++|+|.++||+++|++| +...++.|..
T Consensus        40 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~  116 (128)
T 3ul3_B           40 MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG--KRIYLLKVDLDKNESLARKFSVKSLPTIILLKNK-TMLARKDHFV  116 (128)
T ss_dssp             SCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHG--GGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETT-EEEEEESSCC
T ss_pred             ccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECC-EEEEEecCCC
Confidence            678999999999999999999999999999986  4799999999999999999999999999999765 5677899999


Q ss_pred             CHHHHHHHHHH
Q 018270          237 DLEDFVSFINE  247 (358)
Q Consensus       237 ~~~~l~~~i~~  247 (358)
                      +.++|.+||++
T Consensus       117 ~~~~l~~~l~~  127 (128)
T 3ul3_B          117 SSNDLIALIKK  127 (128)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHHh
Confidence            99999999864

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.73  E-value=8.9e-18  Score=128.59  Aligned_cols=101  Identities=17%  Similarity=0.285  Sum_probs=84.8

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC----cccHHHHHhcCCCccc
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA----DKYKDLAEKYGVSGFP  217 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~----~~~~~l~~~~~v~~~P  217 (358)
                      .+..++.++|++.+ ..+++++|.||++||++|+.+.|.+.++++.+.  ..+.++.++.    +...+++++|+|.++|
T Consensus        13 ~~~~~~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~i~~~P   89 (118)
T 1zma_A           13 DLEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETK--AHIYFINSEEPSQLNDLQAFRSRYGIPTVP   89 (118)
T ss_dssp             TSEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC--CCCEEEETTCGGGHHHHHHHHHHHTCCSSC
T ss_pred             hhhcCCHHHHHHHH-hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcC--CeEEEEECCCcCcHHHHHHHHHHcCCCCCC
Confidence            46778999999987 567899999999999999999999999999874  4566664443    3346799999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                      |+++|++| +...++.|..+.++|.+||+
T Consensus        90 t~~~~~~G-~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           90 GFVHITDG-QINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEEEETT-EEEEECCTTCCHHHHHHHHT
T ss_pred             eEEEEECC-EEEEEecCCCCHHHHHHHhh
Confidence            99999866 45678899999999999985

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.73  E-value=1.9e-17  Score=126.12  Aligned_cols=100  Identities=17%  Similarity=0.256  Sum_probs=83.7

Q ss_pred             CCeEEcChhhHHHHhcC-CC--cEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           23 DDVVVLTEDNFEKEVGQ-DR--GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~-~~--~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ..+.++|.++|.+.+.+ ++  +++|+||++||++|+.+.|.++++++++   +++.|++||+++.   +.+|+|.++||
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~---~~v~f~kvd~d~~---~~~~~v~~~PT   76 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF---PETKFVKAIVNSC---IQHYHDNCLPT   76 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHC---TTSEEEEEEGGGT---STTCCGGGCSE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC---CCCEEEEEEhHHh---HHHCCCCCCCE
Confidence            35788899999987743 33  8999999999999999999999999998   4599999999875   58999999999


Q ss_pred             EEEccCCCCCcccccCC-------CCHHHHHHHHhcc
Q 018270          100 IQWFPKGSLEPKKYEGP-------RSTEALAEYVNNE  129 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~-------~~~~~i~~~i~~~  129 (358)
                      +++|++|... .++.|.       .+.+++..++.+.
T Consensus        77 ~~~fk~G~~v-~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           77 IFVYKNGQIE-AKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EEEEETTEEE-EEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EEEEECCEEE-EEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            9999987643 555553       4688888888764

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.72  E-value=1.9e-17  Score=125.98  Aligned_cols=100  Identities=26%  Similarity=0.532  Sum_probs=85.6

Q ss_pred             CceEcCc-ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          142 NVVVLTA-DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       142 ~v~~l~~-~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      .+..++. ++|++.+ ..+++++|.||++||++|+.+.|.+.++++.+.   ++.++.+|++++.+++++|+|.++||++
T Consensus        13 ~~~~~~~~~~~~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   88 (114)
T 2oe3_A           13 SITKLTNLTEFRNLI-KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVKCDVDESPDIAKECEVTAMPTFV   88 (114)
T ss_dssp             GSCBCCSHHHHHHHH-HHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSBSEEE
T ss_pred             heeecCCHHHHHHHH-hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHCCCCcccEEE
Confidence            3445544 5667766 678999999999999999999999999999885   3999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      +|++| +...++.|.. .+.|.++|++
T Consensus        89 ~~~~G-~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           89 LGKDG-QLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEETT-EEEEEEESSC-HHHHHHHHHT
T ss_pred             EEeCC-eEEEEEeCCC-HHHHHHHHHh
Confidence            99766 4566788888 9999999864

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.72  E-value=1.4e-17  Score=128.19  Aligned_cols=104  Identities=28%  Similarity=0.603  Sum_probs=90.4

Q ss_pred             CCeEEcCh-hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTE-DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~-~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..+..++. ++|++.++++++++|.||++||++|+.+.|.+.++++.+++. .+.++.+|++++++++++|+|.++||++
T Consensus        15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~   93 (121)
T 2j23_A           15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTFV   93 (121)
T ss_dssp             CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCHHHHHHHTCCSSSEEE
T ss_pred             cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCHHHHHHcCCCcccEEE
Confidence            45566655 889999988999999999999999999999999999988631 3999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +|.+|. ...++.|. +.+++.++|.+.
T Consensus        94 ~~~~G~-~~~~~~G~-~~~~l~~~l~~~  119 (121)
T 2j23_A           94 FFKNGQ-KIDTVVGA-DPSKLQAAITQH  119 (121)
T ss_dssp             EEETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             EEECCe-EEeeEcCC-CHHHHHHHHHHh
Confidence            997654 44678888 999999999865

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.72  E-value=2.6e-17  Score=126.04  Aligned_cols=108  Identities=29%  Similarity=0.469  Sum_probs=88.5

Q ss_pred             CCceEc--CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          141 SNVVVL--TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       141 ~~v~~l--~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ..+..+  +..+|++.+...+++++|.||++||++|+.+.|.+.++++.+   +++.++.+|++++.+++++|+|.++||
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~---~~v~~~~vd~~~~~~~~~~~~i~~~Pt   79 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN---KDVTFIKVDVDKNGNAADAYGVSSIPA   79 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC---CCeEEEEEECCCCHHHHHhcCCCCCCE
Confidence            346667  568898666567899999999999999999999999999988   579999999999999999999999999


Q ss_pred             EEEEeCC---CcceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          219 LKFFPKG---NKDGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       219 i~~~~~g---~~~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +++|+++   ++...++.|..+ ++|.+.+.++..++
T Consensus        80 ~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~~~~~  115 (118)
T 2f51_A           80 LFFVKKEGNEIKTLDQFVGADV-SRIKADIEKFKHHH  115 (118)
T ss_dssp             EEEEEEETTEEEEEEEEESCCH-HHHHHHHHHHC---
T ss_pred             EEEEeCCCCcceEEEeecCCCH-HHHHHHHHHhhhcc
Confidence            9999871   245566777665 45999988876543

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.72  E-value=1.6e-17  Score=131.51  Aligned_cols=102  Identities=17%  Similarity=0.247  Sum_probs=84.3

Q ss_pred             CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270          147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       147 ~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g  225 (358)
                      +.++|++.+.+ .+++++|.|||+||++|+.+.|.++++++.+.  +++.++.||++++++++++|+|.++||+++|.+|
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G   87 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   87 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEccccCHHHHHHcCCCCCCEEEEEECC
Confidence            56889877754 68999999999999999999999999999985  4699999999999999999999999999999887


Q ss_pred             Cccee--------eecCCC-CHHHHHHHHHHhcC
Q 018270          226 NKDGE--------EYGGGR-DLEDFVSFINEKCG  250 (358)
Q Consensus       226 ~~~~~--------~~~g~~-~~~~l~~~i~~~~~  250 (358)
                      +....        ...|.. +.+++.++|++...
T Consensus        88 ~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~  121 (142)
T 1qgv_A           88 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  121 (142)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCcceeeeecCcHHHHHHHHHHHHH
Confidence            54322        234444 37888888876653

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.72  E-value=7.6e-18  Score=132.91  Aligned_cols=105  Identities=10%  Similarity=0.113  Sum_probs=80.4

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECCC--ChhhhhhhHHHHHHHHHhhcCCceE--EEEEeCccchhhHhhcCccCCCe
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKKLAPEYEKLGASFKKAKSVL--IGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~--c~~C~~~~~~~~~~~~~~~~~~~v~--~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      .+..+++++|++.+.+++.++|.||++|  |++|+.+.|.|+++++++   +++.  +++||++++++++++|+|.++||
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~---~~v~~~~~~Vd~d~~~~la~~~~V~~iPT   94 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF---PQFDWQVAVADLEQSEAIGDRFNVRRFPA   94 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC---TTSCCEEEEECHHHHHHHHHTTTCCSSSE
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh---cccceeEEEEECCCCHHHHHhcCCCcCCe
Confidence            7889999999999987788999999987  999999999999999988   3477  99999999999999999999999


Q ss_pred             EEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270          100 IQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +++|++|. ...++.|.++.+++.+++.+....
T Consensus        95 ~~~fk~G~-~v~~~~G~~~~~~l~~~i~~~l~~  126 (142)
T 2es7_A           95 TLVFTDGK-LRGALSGIHPWAELLTLMRSIVDT  126 (142)
T ss_dssp             EEEESCC-----CEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEeCCE-EEEEEeCCCCHHHHHHHHHHHhcc
Confidence            99996665 447899999999999999987653

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.71  E-value=4e-17  Score=125.56  Aligned_cols=105  Identities=28%  Similarity=0.603  Sum_probs=90.4

Q ss_pred             CCceEcC-cccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEE
Q 018270          141 SNVVVLT-ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  219 (358)
Q Consensus       141 ~~v~~l~-~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti  219 (358)
                      ..+..++ .++|++.+ ..+++++|.||++||++|+.+.|.+.++++.+... ++.++.+|++.+.+++++|+|.++||+
T Consensus        15 ~~~~~i~~~~~f~~~l-~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~   92 (121)
T 2j23_A           15 GSVQVISSYDQFKQVT-GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTF   92 (121)
T ss_dssp             CCEEECCSHHHHHHHH-SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             cceEEcCCHHHHHHHH-cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCHHHHHHcCCCcccEE
Confidence            3455665 48899988 78899999999999999999999999999987521 499999999999999999999999999


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++|++| +....+.|. +.++|.+||++.+
T Consensus        93 ~~~~~G-~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           93 VFFKNG-QKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEETT-EEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEECC-eEEeeEcCC-CHHHHHHHHHHhh
Confidence            999866 456678888 9999999998753

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.71  E-value=7.2e-17  Score=123.29  Aligned_cols=106  Identities=30%  Similarity=0.602  Sum_probs=91.1

Q ss_pred             CCceEc-CcccHHHHHhc---CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          141 SNVVVL-TADNFDEIVLD---KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       141 ~~v~~l-~~~~f~~~~~~---~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      ..+..+ +.++|++.+..   .+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++.+.+++++|+|.++
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~   82 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEAM   82 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSB
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCHHHHHHcCCCcC
Confidence            446667 57899988854   47899999999999999999999999999884   699999999999999999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      ||+++|++| +....+.| .+.+++.++|.+.++.
T Consensus        83 Pt~~~~~~g-~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           83 PTFLFIKDG-EKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             SEEEEEETT-EEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             cEEEEEeCC-eEEEEecC-CCHHHHHHHHHHHhcc
Confidence            999999766 44556777 5899999999987764

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.71  E-value=3.6e-17  Score=129.38  Aligned_cols=99  Identities=15%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             ChhhHHHHh-c-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           29 TEDNFEKEV-G-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        29 ~~~~f~~~~-~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      +.++|++.+ + ++++++|+|||+||++|+.+.|.++++++.++  +.+.++.||++++++++++|+|.++||+++|.+|
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G   87 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   87 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEccccCHHHHHHcCCCCCCEEEEEECC
Confidence            578898766 3 58999999999999999999999999999986  5699999999999999999999999999999876


Q ss_pred             CCCcc--------cccCCCC-HHHHHHHHhcc
Q 018270          107 SLEPK--------KYEGPRS-TEALAEYVNNE  129 (358)
Q Consensus       107 ~~~~~--------~~~g~~~-~~~i~~~i~~~  129 (358)
                      .....        +..|..+ .+++.++|++.
T Consensus        88 ~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A           88 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  119 (142)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             cEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence            53321        3455554 88888888764

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.70  E-value=5.1e-17  Score=124.17  Aligned_cols=105  Identities=24%  Similarity=0.538  Sum_probs=90.6

Q ss_pred             CCCeEEc-ChhhHHHHhcC----CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC
Q 018270           22 ADDVVVL-TEDNFEKEVGQ----DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG   96 (358)
Q Consensus        22 ~~~v~~l-~~~~f~~~~~~----~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (358)
                      ...+..+ +.++|++.+..    +++++|.||++||++|+.+.|.+.++++.++   ++.++.+|++++++++++|+|.+
T Consensus         5 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~   81 (118)
T 2vm1_A            5 EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEA   81 (118)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCHHHHHHcCCCc
Confidence            4567777 57899998844    8999999999999999999999999999884   59999999999999999999999


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      +|++++|.+|. ....+.| .+.+++.++|.+..+
T Consensus        82 ~Pt~~~~~~g~-~~~~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           82 MPTFLFIKDGE-KVDSVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             BSEEEEEETTE-EEEEEES-CCHHHHHHHHHHHHC
T ss_pred             CcEEEEEeCCe-EEEEecC-CCHHHHHHHHHHHhc
Confidence            99999997654 4367778 588999999987654

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=1.4e-16  Score=124.95  Aligned_cols=102  Identities=18%  Similarity=0.259  Sum_probs=87.0

Q ss_pred             CCeEEcChhhHHHHhcC---CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           23 DDVVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~---~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ..+..++.++|.+.+.+   +++++|+||++||++|+.+.|.|.++++.+   ..+.|+.||+++..   ++|+|.++||
T Consensus        10 g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~~~~~---~~~~i~~~Pt   83 (135)
T 2dbc_A           10 GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF---PETKFVKAIVNSCI---EHYHDNCLPT   83 (135)
T ss_dssp             CSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHC---SSEEEEEECCSSSC---SSCCSSCCSE
T ss_pred             CceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHC---CCcEEEEEEhhcCc---ccCCCCCCCE
Confidence            46888999999998843   368999999999999999999999999987   46999999998875   7899999999


Q ss_pred             EEEccCCCCCcccccCCC-------CHHHHHHHHhccCC
Q 018270          100 IQWFPKGSLEPKKYEGPR-------STEALAEYVNNEGG  131 (358)
Q Consensus       100 l~~~~~~~~~~~~~~g~~-------~~~~i~~~i~~~~~  131 (358)
                      +++|.+|.. ..++.|..       +.++|.+++.+...
T Consensus        84 ~~~~~~G~~-v~~~~G~~~~~~~~~~~~~l~~~l~~~~~  121 (135)
T 2dbc_A           84 IFVYKNGQI-EGKFIGIIECGGINLKLEELEWKLSEVGA  121 (135)
T ss_dssp             EEEESSSSC-SEEEESTTTTTCTTCCHHHHHHHHHHHTS
T ss_pred             EEEEECCEE-EEEEEeEEeeCCCcCCHHHHHHHHHHcCC
Confidence            999986654 36777764       78999999987643

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.70  E-value=1.1e-16  Score=121.24  Aligned_cols=104  Identities=29%  Similarity=0.579  Sum_probs=89.5

Q ss_pred             CCceEc-CcccHHHHHhc---CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          141 SNVVVL-TADNFDEIVLD---KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       141 ~~v~~l-~~~~f~~~~~~---~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      ..+..+ +.++|++.+..   .+++++|.||++||++|+.+.|.+.++++.+.   ++.++.+|++.+.+++++|+|.++
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~   80 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccHHHHHhCCCCcc
Confidence            346666 66899988854   47899999999999999999999999999884   699999999999999999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ||+++|++| +....+.| .+.+.|.++|++.+
T Consensus        81 Pt~~~~~~G-~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           81 PTFIFLKDG-KLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             TEEEEEETT-EEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             cEEEEEeCC-EEEEEEec-CCHHHHHHHHHHhh
Confidence            999999766 45556777 68899999998754

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=1.4e-16  Score=124.90  Aligned_cols=104  Identities=14%  Similarity=0.191  Sum_probs=88.0

Q ss_pred             CCCCceEcCcccHHHHHhcC--CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          139 VPSNVVVLTADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~--~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      ....+.+++..+|.+.+...  +++++|.||++||++|+.+.|.|+++++.+   .++.|+.||+++..   ++|+|.++
T Consensus         8 ~~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~~~~~---~~~~i~~~   81 (135)
T 2dbc_A            8 KFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF---PETKFVKAIVNSCI---EHYHDNCL   81 (135)
T ss_dssp             CCCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHC---SSEEEEEECCSSSC---SSCCSSCC
T ss_pred             CCCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHC---CCcEEEEEEhhcCc---ccCCCCCC
Confidence            34568889999999988543  368999999999999999999999999988   36999999998775   78999999


Q ss_pred             cEEEEEeCCCcceeeecCCC-------CHHHHHHHHHHhc
Q 018270          217 PTLKFFPKGNKDGEEYGGGR-------DLEDFVSFINEKC  249 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~-------~~~~l~~~i~~~~  249 (358)
                      ||+++|.+|. ...++.|..       +.++|..+|.+..
T Consensus        82 Pt~~~~~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           82 PTIFVYKNGQ-IEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             SEEEEESSSS-CSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             CEEEEEECCE-EEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            9999998764 555666764       7899999998864

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.70  E-value=4.6e-17  Score=123.36  Aligned_cols=102  Identities=28%  Similarity=0.542  Sum_probs=88.1

Q ss_pred             CCeEEc-ChhhHHHHhc----CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCC
Q 018270           23 DDVVVL-TEDNFEKEVG----QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGY   97 (358)
Q Consensus        23 ~~v~~l-~~~~f~~~~~----~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (358)
                      ..+..+ +.++|.+.+.    .+++++|.||++||++|+.+.|.+.++++.++   ++.++.+|++++++++++|++.++
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~   80 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccHHHHHhCCCCcc
Confidence            446666 6789999884    48999999999999999999999999999874   699999999999999999999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |++++|.+|. ...++.| .+.+++.+++.+.
T Consensus        81 Pt~~~~~~G~-~~~~~~g-~~~~~l~~~l~~~  110 (113)
T 1ti3_A           81 PTFIFLKDGK-LVDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             TEEEEEETTE-EEEEEEC-CCTTHHHHHHHHH
T ss_pred             cEEEEEeCCE-EEEEEec-CCHHHHHHHHHHh
Confidence            9999997654 4366778 6888999998765

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.70  E-value=3.8e-17  Score=127.82  Aligned_cols=106  Identities=16%  Similarity=0.389  Sum_probs=89.4

Q ss_pred             CCCceEcCc-ccHHHHHhcC-CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          140 PSNVVVLTA-DNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       140 ~~~v~~l~~-~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      ...+.+++. ++|+..+... +++++|.||++||++|+.+.|.++++++.+    ++.++.+|++.+.+++++|+|.++|
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~~l~~~~~v~~~P   94 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHPKLNDQHNIKALP   94 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchHHHHHhcCCCCCC
Confidence            455777875 8888888443 579999999999999999999999998876    5899999999999999999999999


Q ss_pred             EEEEEe--CCCc-ceeeecCCCCHHHHHHHHHHhcC
Q 018270          218 TLKFFP--KGNK-DGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       218 ti~~~~--~g~~-~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      |+++|.  +|.. ...++.|. +.++|.++|++.++
T Consensus        95 t~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           95 TFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            999996  5532 55677887 89999999998754

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.69  E-value=8.1e-17  Score=126.95  Aligned_cols=107  Identities=22%  Similarity=0.482  Sum_probs=92.0

Q ss_pred             CCCceEcC-cccHHHHHh---cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc
Q 018270          140 PSNVVVLT-ADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG  215 (358)
Q Consensus       140 ~~~v~~l~-~~~f~~~~~---~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~  215 (358)
                      +..+..++ .++|++.+.   ..+++++|.||++||++|+.+.|.++++++.+   +++.++.||++++.+++++|+|.+
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~---~~v~~~~v~~~~~~~~~~~~~v~~   99 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY---PSLMFLVIDVDELSDFSASWEIKA   99 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTSHHHHHHTTCCE
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHC---CCCEEEEEeCcccHHHHHHcCCCc
Confidence            44566664 789998874   35789999999999999999999999999988   369999999999999999999999


Q ss_pred             ccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          216 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      +||++++++| +....+.|. +.++|.++|.+.++.
T Consensus       100 ~Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A          100 TPTFFFLRDG-QQVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             ESEEEEEETT-EEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             ccEEEEEcCC-eEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            9999999766 456677887 899999999887653

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.69  E-value=2.2e-16  Score=150.30  Aligned_cols=115  Identities=27%  Similarity=0.508  Sum_probs=100.7

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC-CCCeEEEEEeCc--ccHHHHHhcCCCc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDAD--KYKDLAEKYGVSG  215 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~-~~~v~~~~vd~~--~~~~l~~~~~v~~  215 (358)
                      ..+.+.+++.++|+..+.+.+++++|.|||+||++|+.+.|.|+++++.+.. +..+.++.||++  ++.+++++|+|.+
T Consensus        10 ~~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~   89 (519)
T 3t58_A           10 SSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG   89 (519)
T ss_dssp             TTSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCS
T ss_pred             CCCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcc
Confidence            3556899999999998877789999999999999999999999999999974 347999999995  5889999999999


Q ss_pred             ccEEEEEeCCCc---ceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          216 FPTLKFFPKGNK---DGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       216 ~Pti~~~~~g~~---~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      +||+++|.+|++   ....+.|+++.+.|.++|.+.+....
T Consensus        90 ~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           90 FPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             BSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             cCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            999999997543   44567788999999999999987665

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.69  E-value=7.4e-17  Score=127.17  Aligned_cols=104  Identities=21%  Similarity=0.488  Sum_probs=89.5

Q ss_pred             CCeEEc-ChhhHHHHh----cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCC
Q 018270           23 DDVVVL-TEDNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGY   97 (358)
Q Consensus        23 ~~v~~l-~~~~f~~~~----~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (358)
                      ..+..+ +.++|.+.+    .++++++|+||++||++|+.+.|.+.++++.+   +++.++.||++++++++++|+|.++
T Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~---~~v~~~~v~~~~~~~~~~~~~v~~~  100 (139)
T 3d22_A           24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY---PSLMFLVIDVDELSDFSASWEIKAT  100 (139)
T ss_dssp             TTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTSHHHHHHTTCCEE
T ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHC---CCCEEEEEeCcccHHHHHHcCCCcc
Confidence            345555 579999887    35899999999999999999999999999987   4599999999999999999999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      |++++|.+|. ....+.|. +.+++.+++.+..+
T Consensus       101 Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~~~  132 (139)
T 3d22_A          101 PTFFFLRDGQ-QVDKLVGA-NKPELHKKITAILD  132 (139)
T ss_dssp             SEEEEEETTE-EEEEEESC-CHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCe-EEEEEeCC-CHHHHHHHHHHHhc
Confidence            9999996554 44677887 88999999987654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.69  E-value=8.1e-17  Score=123.24  Aligned_cols=105  Identities=23%  Similarity=0.445  Sum_probs=87.4

Q ss_pred             CCeEEc--ChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           23 DDVVVL--TEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        23 ~~v~~l--~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ..+..+  +.++|.+.+ +++++++|.||++||++|+.+.|.|.++++.+   +.+.++.||++++++++++|+|.++|+
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~---~~v~~~~vd~~~~~~~~~~~~i~~~Pt   79 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN---KDVTFIKVDVDKNGNAADAYGVSSIPA   79 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC---CCeEEEEEECCCCHHHHHhcCCCCCCE
Confidence            346667  678898554 67899999999999999999999999999988   569999999999999999999999999


Q ss_pred             EEEccCC---CCCcccccCCCCHHHHHHHHhccCC
Q 018270          100 IQWFPKG---SLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus       100 l~~~~~~---~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      +++|+++   +....++.|..+ ++|.+.+.+...
T Consensus        80 ~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~~~  113 (118)
T 2f51_A           80 LFFVKKEGNEIKTLDQFVGADV-SRIKADIEKFKH  113 (118)
T ss_dssp             EEEEEEETTEEEEEEEEESCCH-HHHHHHHHHHC-
T ss_pred             EEEEeCCCCcceEEEeecCCCH-HHHHHHHHHhhh
Confidence            9999871   334467778654 569998887654

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=7.3e-17  Score=125.62  Aligned_cols=106  Identities=24%  Similarity=0.436  Sum_probs=90.0

Q ss_pred             eEEcChhhHHHHh----cCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCc--cchhhHhhcCcc
Q 018270           25 VVVLTEDNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQ   95 (358)
Q Consensus        25 v~~l~~~~f~~~~----~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~   95 (358)
                      ...++..+|.+.+    .++++++|.||++||++|+.+.|.+   ..+.+.++  ..+.++.+|++  .+..++++|+|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~v~   85 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN--RHFVNLKMDMEKGEGVELRKKYGVH   85 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH--HHSEEEEECSSSTTHHHHHHHTTCC
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh--cCeEEEEEecCCcchHHHHHHcCCC
Confidence            4556778888877    3689999999999999999999999   77777765  46889999998  578999999999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      ++|++++|+.++....++.|..+.+++.++|++..++
T Consensus        86 ~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           86 AYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             SSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence            9999999976665657888999999999999987554

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.68  E-value=4.1e-17  Score=127.63  Aligned_cols=105  Identities=15%  Similarity=0.333  Sum_probs=88.2

Q ss_pred             CCCeEEcCh-hhHHHHhcC--CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           22 ADDVVVLTE-DNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        22 ~~~v~~l~~-~~f~~~~~~--~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      ...+..+++ ++|.+.++.  +++++|.||++||++|+.+.|.|+++++.+    .+.++.||++++.+++++|+|.++|
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~~l~~~~~v~~~P   94 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHPKLNDQHNIKALP   94 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchHHHHHhcCCCCCC
Confidence            345778875 889988854  579999999999999999999999988765    4899999999999999999999999


Q ss_pred             eEEEcc--CCC-CCcccccCCCCHHHHHHHHhccCC
Q 018270           99 TIQWFP--KGS-LEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        99 ~l~~~~--~~~-~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      |+++|.  +|. ....++.|. +.+++.++|.+...
T Consensus        95 t~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           95 TFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            999995  443 244677887 89999999987653

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=1.7e-16  Score=123.48  Aligned_cols=108  Identities=24%  Similarity=0.448  Sum_probs=90.4

Q ss_pred             eEcCcccHHHHHh---cCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCc
Q 018270          144 VVLTADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSG  215 (358)
Q Consensus       144 ~~l~~~~f~~~~~---~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~  215 (358)
                      ..++..+|++.+.   ..+++++|.||++||++|+.+.|.+   ..+++.+.  .++.++.+|++  .+..++++|+|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~v~~   86 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN--RHFVNLKMDMEKGEGVELRKKYGVHA   86 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH--HHSEEEEECSSSTTHHHHHHHTTCCS
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh--cCeEEEEEecCCcchHHHHHHcCCCC
Confidence            3457788888773   3578999999999999999999998   77777663  46889999998  5788999999999


Q ss_pred             ccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          216 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      +||+++|..+++...++.|..+.++|.++|++..++..
T Consensus        87 ~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~  124 (130)
T 2kuc_A           87 YPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESEG  124 (130)
T ss_dssp             SCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            99999996555666788999999999999999877653

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.67  E-value=2.7e-16  Score=123.14  Aligned_cols=106  Identities=17%  Similarity=0.375  Sum_probs=88.5

Q ss_pred             CCCeE-EcChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeC----ccchhhHhh
Q 018270           22 ADDVV-VLTEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDC----DEHKSLCSK   91 (358)
Q Consensus        22 ~~~v~-~l~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~----~~~~~l~~~   91 (358)
                      ...+. ..+.+++...+.  ++++++|+||++||++|+.+.|.+   .++++.++   ++.++.||+    +.+.+++++
T Consensus        10 ~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~---~~~~~~vd~~~~~~~~~~l~~~   86 (134)
T 2fwh_A           10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTANDAQDVALLKH   86 (134)
T ss_dssp             CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCCHHHHHHHHH
T ss_pred             CCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc---CcEEEEEeCCCCcchHHHHHHH
Confidence            34455 345677887774  489999999999999999999999   89998885   499999999    667889999


Q ss_pred             cCccCCCeEEEccCCCCCc--ccccCCCCHHHHHHHHhccC
Q 018270           92 YGVQGYPTIQWFPKGSLEP--KKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        92 ~~i~~~P~l~~~~~~~~~~--~~~~g~~~~~~i~~~i~~~~  130 (358)
                      |+|.++|++++|+.+|...  .++.|..+.+++.++++...
T Consensus        87 ~~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           87 LNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             TTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred             cCCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence            9999999999996666554  58899999999999998754

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.50  E-value=3.5e-18  Score=127.84  Aligned_cols=102  Identities=36%  Similarity=0.753  Sum_probs=89.9

Q ss_pred             eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        25 v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      +.+++.++|.+.+ +++++++|.||++||++|+.+.|.+.++++.++  +++.++.+|++++.+++++|++.++|++++|
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE--GKVKVVKVNVDENPNTAAQYGIRSIPTLLLF   80 (106)
Confidence            5678899998665 778999999999999999999999999999886  4699999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .+|. ....+.|..+.+++.+++++.
T Consensus        81 ~~g~-~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           81 KNGQ-VVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            6554 447888999999999988753

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.49  E-value=4.6e-18  Score=127.21  Aligned_cols=103  Identities=34%  Similarity=0.690  Sum_probs=90.9

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      +.+++.++|.+.+...+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.+.+++++|++.++|++++|
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE--GKVKVVKVNVDENPNTAAQYGIRSIPTLLLF   80 (106)
Confidence            56788899987776778999999999999999999999999999885  3699999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++| +....+.|..+.+++.+||++.
T Consensus        81 ~~g-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           81 KNG-QVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            655 4566788999999999998753

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.66  E-value=1.7e-17  Score=153.97  Aligned_cols=109  Identities=29%  Similarity=0.444  Sum_probs=91.7

Q ss_pred             CCCCceEcCcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCC------CeEEEEEeCcccHHHHHhc
Q 018270          139 VPSNVVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED------DVVVANLDADKYKDLAEKY  211 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~------~v~~~~vd~~~~~~l~~~~  211 (358)
                      .+..+..++..+|++.+.. .+++++|.|||+||++|+.+.|.|.++++.+....      ++.|+.||++.+.+++++|
T Consensus        21 ~~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y  100 (470)
T 3qcp_A           21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKY  100 (470)
T ss_dssp             TCTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHT
T ss_pred             CCCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHc
Confidence            4567999999999998843 34789999999999999999999999999996432      5999999999999999999


Q ss_pred             CCCcccEEEEEeCCC-cceeeecCCCCHHHHHHHHHHh
Q 018270          212 GVSGFPTLKFFPKGN-KDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       212 ~v~~~Pti~~~~~g~-~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +|.++||+++|.+|+ ..+..|.|.++.+.| +|+.++
T Consensus       101 ~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L-~fI~k~  137 (470)
T 3qcp_A          101 DINFVPRLFFFYPRDSCRSNEECGTSSLEHV-AFENSH  137 (470)
T ss_dssp             TCCSSCEEEEEEESSCCCTTSCCCCCCEEEE-ECSCTT
T ss_pred             CCCccCeEEEEECCCceEEEEeeCCCCHHHH-HHHHHh
Confidence            999999999997654 366788898777765 555443

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.66  E-value=2.4e-16  Score=123.28  Aligned_cols=90  Identities=22%  Similarity=0.387  Sum_probs=79.9

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHH--HHHHHhhcCCceEEEEEeC---ccchhhHhhcCc---cCCCeEEEccCCCCC
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYE--KLGASFKKAKSVLIGKVDC---DEHKSLCSKYGV---QGYPTIQWFPKGSLE  109 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~--~~~~~~~~~~~v~~~~vd~---~~~~~l~~~~~i---~~~P~l~~~~~~~~~  109 (358)
                      .++++++|+||++||++|+.+.|.|.  ++++.++  +++.++.||+   +++.+++++|+|   .++|++++|+.++..
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~--~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~  104 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIA--KHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKV  104 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHH--HHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhc--CCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCE
Confidence            57899999999999999999999999  9999886  5699999999   899999999999   999999999666656


Q ss_pred             cccccC-------CCCHHHHHHHHhcc
Q 018270          110 PKKYEG-------PRSTEALAEYVNNE  129 (358)
Q Consensus       110 ~~~~~g-------~~~~~~i~~~i~~~  129 (358)
                      ...+.|       ..+.+++.+|+++.
T Consensus       105 ~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          105 RYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EEEecCCcccccccCCHHHHHHHHHHh
Confidence            567777       67899999998754

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.66  E-value=6.1e-17  Score=150.34  Aligned_cols=107  Identities=24%  Similarity=0.439  Sum_probs=91.8

Q ss_pred             CCCeEEcChhhHHHHhcC--CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCC------ceEEEEEeCccchhhHhhcC
Q 018270           22 ADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAK------SVLIGKVDCDEHKSLCSKYG   93 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~--~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~------~v~~~~vd~~~~~~l~~~~~   93 (358)
                      ...+..++.++|++.+.+  +++++|+|||+||++|+.+.|.|+++++.+....      .+.|+.|||++++++|++|+
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            457999999999998854  4789999999999999999999999999987432      59999999999999999999


Q ss_pred             ccCCCeEEEccCCC-CCcccccCCCCHHHHHHHHhcc
Q 018270           94 VQGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        94 i~~~P~l~~~~~~~-~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |.++||+++|.+++ ..+..|.|.++.+.+ .|+.+.
T Consensus       102 V~~~PTlilf~~gg~~~~~~y~G~r~~e~L-~fI~k~  137 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSCRSNEECGTSSLEHV-AFENSH  137 (470)
T ss_dssp             CCSSCEEEEEEESSCCCTTSCCCCCCEEEE-ECSCTT
T ss_pred             CCccCeEEEEECCCceEEEEeeCCCCHHHH-HHHHHh
Confidence            99999999997654 446789998887776 666554

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.65  E-value=5.8e-16  Score=121.04  Aligned_cols=108  Identities=8%  Similarity=0.158  Sum_probs=93.9

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC--CCeE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG--YPTI  100 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~P~l  100 (358)
                      .-+.++|+++|.+.++.+.+++|.||++ |++|+.+.|.++++|++++  +++.|+.+|.++++.++..|||.+  +||+
T Consensus         6 plv~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~--gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl   82 (133)
T 2djk_A            6 PLIGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQR--GVINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CCSEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSST--TTSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             CceeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhC--CeEEEEEEchHHhHHHHHHcCCCcccCCEE
Confidence            3478899999999888889999999999 8999999999999999997  679999999999999999999999  9999


Q ss_pred             EEccC-CCCCccccc--CCCCHHHHHHHHhccCCCCc
Q 018270          101 QWFPK-GSLEPKKYE--GPRSTEALAEYVNNEGGTNV  134 (358)
Q Consensus       101 ~~~~~-~~~~~~~~~--g~~~~~~i~~~i~~~~~~~~  134 (358)
                      ++|+. ++.. ....  |..+.+.|.+|+++....+.
T Consensus        83 ~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~Gkl  118 (133)
T 2djk_A           83 AIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             EEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             EEEecCcCcc-cCCCCccccCHHHHHHHHHHHHcCCc
Confidence            99986 3333 4554  99999999999987654433

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.65  E-value=4.6e-16  Score=121.81  Aligned_cols=102  Identities=25%  Similarity=0.501  Sum_probs=84.7

Q ss_pred             cCcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeC----cccHHHHHhcCCCccc
Q 018270          146 LTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDA----DKYKDLAEKYGVSGFP  217 (358)
Q Consensus       146 l~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~----~~~~~l~~~~~v~~~P  217 (358)
                      .+.++|+..+.+ .+++++|.||++||++|+.+.|.+   .++++.+.   ++.++.+|+    +.+.+++++|+|.++|
T Consensus        17 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~---~~~~~~vd~~~~~~~~~~l~~~~~v~~~P   93 (134)
T 2fwh_A           17 KTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTANDAQDVALLKHLNVLGLP   93 (134)
T ss_dssp             CSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCCHHHHHHHHHTTCCSSS
T ss_pred             cCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc---CcEEEEEeCCCCcchHHHHHHHcCCCCCC
Confidence            355777776643 478999999999999999999998   89998884   499999999    5678899999999999


Q ss_pred             EEEEEeCCCcce--eeecCCCCHHHHHHHHHHhcC
Q 018270          218 TLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       218 ti~~~~~g~~~~--~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      |+++|..+|+..  .++.|..+.++|.+++++..+
T Consensus        94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence            999995444444  689999999999999987544

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.65  E-value=3.5e-16  Score=133.80  Aligned_cols=104  Identities=18%  Similarity=0.251  Sum_probs=91.2

Q ss_pred             eEEcChhhHHHHhcCCCcE-EEEEECCCChhhhhhhHHHHHHHHHhhc--CCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           25 VVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKK--AKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~~--~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ...+++++++.+...++++ +|.||++||++|+.+.|.|.+++..+.+  .+.+.++.||++++++++++|+|.++||++
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  197 (226)
T 1a8l_A          118 ETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIV  197 (226)
T ss_dssp             CCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEE
T ss_pred             CCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEE
Confidence            4578889998887666777 9999999999999999999999999862  247999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +|++|. ....+.|.++.+++.+|+.+.
T Consensus       198 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~  224 (226)
T 1a8l_A          198 IQVNGE-DRVEFEGAYPEKMFLEKLLSA  224 (226)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHHHHH
T ss_pred             EEeCCc-eeEEEcCCCCHHHHHHHHHHh
Confidence            998665 347899999999999999764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.65  E-value=5e-16  Score=119.73  Aligned_cols=102  Identities=15%  Similarity=0.244  Sum_probs=86.4

Q ss_pred             CCeEEcChhhHHHHhcC--CCcEEEEEECC-------CChhhhhhhHHHHHHHHHhhcCCceEEEEEeC-------ccch
Q 018270           23 DDVVVLTEDNFEKEVGQ--DRGALVEFYAP-------WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC-------DEHK   86 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~--~~~~lv~fya~-------~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~-------~~~~   86 (358)
                      ..+...+.++|.+.+.+  +++++|+||++       ||++|+.+.|.+.++++.++  +.+.++.||+       +.+.
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~--~~~~~~~vd~~~~~~~~d~~~   82 (123)
T 1wou_A            5 EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS--EGCVFIYCQVGEKPYWKDPNN   82 (123)
T ss_dssp             EEEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC--TTEEEEEEECCCHHHHHCTTC
T ss_pred             eeEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC--CCcEEEEEECCCchhhhchhH
Confidence            45677789999998854  89999999999       99999999999999999886  4799999999       7889


Q ss_pred             hhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           87 SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        87 ~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      +++++|+|.++||+++|.+++.. ..+.| .+.+.+.+|+.+
T Consensus        83 ~~~~~~~i~~~Pt~~~~~~~~~~-~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           83 DFRKNLKVTAVPTLLKYGTPQKL-VESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHHCCCSSSEEEETTSSCEE-EGGGG-GCHHHHHHHHHC
T ss_pred             HHHHHCCCCeeCEEEEEcCCceE-ecccc-CCHHHHHHHHhc
Confidence            99999999999999999875422 34444 567888888864

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.65  E-value=3.1e-14  Score=123.72  Aligned_cols=207  Identities=16%  Similarity=0.235  Sum_probs=160.3

Q ss_pred             CCCeEEcC-hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           22 ADDVVVLT-EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        22 ~~~v~~l~-~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      ...+..++ .+++.++++.+..++|-|+++|   |....+.|.++|..++  +++.|+.+.   +.+++++|++.+ |++
T Consensus         5 gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~---~~~~~~~f~~~A~~lr--~~~~F~~~~---~~~v~~~~~~~~-p~i   75 (252)
T 2h8l_A            5 SPASVPLRTEEEFKKFISDKDASIVGFFDDS---FSEAHSEFLKAASNLR--DNYRFAHTN---VESLVNEYDDNG-EGI   75 (252)
T ss_dssp             -CCEEECCSHHHHHHHHTSSSCEEEEEESCT---TSHHHHHHHHHHHHTT--TTSCEEEEC---CHHHHHHHCSSS-EEE
T ss_pred             CCCceeecCHHHHHHHhhcCCeEEEEEECCC---CChHHHHHHHHHHhcc--cCcEEEEEC---hHHHHHHhCCCC-CcE
Confidence            35678885 6778888888889999999998   5567889999999997  568888774   467999999997 999


Q ss_pred             EEccCCC------CCcccc-cCCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcc
Q 018270          101 QWFPKGS------LEPKKY-EGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGH  173 (358)
Q Consensus       101 ~~~~~~~------~~~~~~-~g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~  173 (358)
                      ++|+++.      .....| .|.++.++|.+||....-         ..+.++|.+++..+   .+.+.+|.|+.+-+..
T Consensus        76 ~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~---------Plv~e~t~~n~~~~---~~~~~~v~~~~~~~~~  143 (252)
T 2h8l_A           76 ILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF---------GICPHMTEDNKDLI---QGKDLLIAYYDVDYEK  143 (252)
T ss_dssp             EEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSS---------CSSCEECTTTHHHH---SSSSEEEEEECCBTTT
T ss_pred             EEEcchhhcccccccccccCCCCcCHHHHHHHHHhccc---------CCeeecccccHhhh---cCCCeEEEEeecchhh
Confidence            9998631      234678 899999999999998753         24778999999885   3456666776543321


Q ss_pred             c----chhhhhHHHHHHHhcC-CCCeEEEEEeCcccHHHHHhcCC--C--cccEEEEEeCCCcceeeecCCCCHHH--HH
Q 018270          174 C----KNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGV--S--GFPTLKFFPKGNKDGEEYGGGRDLED--FV  242 (358)
Q Consensus       174 c----~~~~~~~~~la~~~~~-~~~v~~~~vd~~~~~~l~~~~~v--~--~~Pti~~~~~g~~~~~~~~g~~~~~~--l~  242 (358)
                      +    ..+...+.++|+.+++ ...+.|+.+|++....+++.||+  .  .+|.++++...+ ..+.+.+..+.+.  |.
T Consensus       144 ~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~-~ky~~~~~~t~~~~~i~  222 (252)
T 2h8l_A          144 NAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKG-EKFVMQEEFSRDGKALE  222 (252)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTS-CEEECCSCCCTTSHHHH
T ss_pred             cchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcC-cEecCCcccCcchHHHH
Confidence            1    1467788899999974 23599999999988889999999  3  599999996533 3455677888888  99


Q ss_pred             HHHHHhcC
Q 018270          243 SFINEKCG  250 (358)
Q Consensus       243 ~~i~~~~~  250 (358)
                      +|+++...
T Consensus       223 ~F~~~~~~  230 (252)
T 2h8l_A          223 RFLQDYFD  230 (252)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHC
Confidence            99998864

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.64  E-value=7.9e-16  Score=120.29  Aligned_cols=104  Identities=13%  Similarity=0.218  Sum_probs=91.5

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc--ccEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--FPTL  219 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~Pti  219 (358)
                      .+.++|..+|++++ ..+.+++|+||++ |++|+.+.|.++++|+.|+  +++.|+++|.++++.+++.|||.+  +||+
T Consensus         7 lv~~~t~~~f~~~~-~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~--gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl   82 (133)
T 2djk_A            7 LIGEIGPETYSDYM-SAGIPLAYIFAET-AEERKELSDKLKPIAEAQR--GVINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CSEECCHHHHHHHH-HTTSCEEEEECSC-SSSHHHHHHHHHHHHHSST--TTSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             ceeccChHHHHHHh-cCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhC--CeEEEEEEchHHhHHHHHHcCCCcccCCEE
Confidence            37789999999886 7788999999999 8999999999999999985  579999999999999999999999  9999


Q ss_pred             EEEeC-CCcceeeec--CCCCHHHHHHHHHHhcC
Q 018270          220 KFFPK-GNKDGEEYG--GGRDLEDFVSFINEKCG  250 (358)
Q Consensus       220 ~~~~~-g~~~~~~~~--g~~~~~~l~~~i~~~~~  250 (358)
                      ++|.+ ++.. +.+.  |..+.+.|.+|+++.+.
T Consensus        83 ~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~  115 (133)
T 2djk_A           83 AIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             EEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHH
T ss_pred             EEEecCcCcc-cCCCCccccCHHHHHHHHHHHHc
Confidence            99986 2322 4554  99999999999998774

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.64  E-value=2.5e-16  Score=133.35  Aligned_cols=104  Identities=22%  Similarity=0.324  Sum_probs=89.4

Q ss_pred             CCCceEc-CcccHHHHHhcCC--CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          140 PSNVVVL-TADNFDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       140 ~~~v~~l-~~~~f~~~~~~~~--~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      ...+.++ +..+|.+.+...+  ++|+|.||++||++|+.+.|.|.+++..+   +++.|+.||++ ++.++.+|+|.++
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~---~~v~f~~vd~~-~~~l~~~~~i~~~  173 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY---PMVKFCKIRAS-NTGAGDRFSSDVL  173 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC---TTSEEEEEEHH-HHTCSTTSCGGGC
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHC---CCeEEEEEECC-cHHHHHHCCCCCC
Confidence            4568888 8899999886543  89999999999999999999999999988   37999999999 8889999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCC-------HHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKDGEEYGGGRD-------LEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~-------~~~l~~~i~~~  248 (358)
                      ||+++|++| .....+.|..+       .++|..||.++
T Consensus       174 PTl~~~~~G-~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          174 PTLLVYKGG-ELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             SEEEEEETT-EEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CEEEEEECC-EEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            999999876 45567777655       48999998753

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.63  E-value=1.3e-16  Score=124.13  Aligned_cols=106  Identities=27%  Similarity=0.584  Sum_probs=90.6

Q ss_pred             CCCeEEc-ChhhHHHHhc----CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC
Q 018270           22 ADDVVVL-TEDNFEKEVG----QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG   96 (358)
Q Consensus        22 ~~~v~~l-~~~~f~~~~~----~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (358)
                      ...+..+ +.++|.+.+.    ++++++|+||++||++|+.+.|.|.++++.++   ++.++.||++++.+++++|+|.+
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   89 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELKEVAEKYNVEA   89 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSGGGHHHHTCCS
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchHHHHHHcCCCc
Confidence            3456777 4688998884    48999999999999999999999999999884   58999999999999999999999


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +|++++|.+|. ...++.| .+.+++.+++.+....
T Consensus        90 ~Pt~~~~~~g~-~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           90 MPTFLFIKDGA-EADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             SCCCCBCTTTT-CCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             cceEEEEeCCe-EEEEEeC-CCHHHHHHHHHHHHhc
Confidence            99999996655 4467778 5888999999887654

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.63  E-value=2.2e-16  Score=122.85  Aligned_cols=109  Identities=30%  Similarity=0.623  Sum_probs=92.3

Q ss_pred             CCCceEc-CcccHHHHHhc---CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc
Q 018270          140 PSNVVVL-TADNFDEIVLD---KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG  215 (358)
Q Consensus       140 ~~~v~~l-~~~~f~~~~~~---~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~  215 (358)
                      ...+.++ +.++|++.+..   .+++++|.||++||++|+.+.|.+.++++.+.   ++.++.+|++.+.+++++|+|.+
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   89 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELKEVAEKYNVEA   89 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSGGGHHHHTCCS
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchHHHHHHcCCCc
Confidence            3446667 46889888854   57899999999999999999999999999884   69999999999999999999999


Q ss_pred             ccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          216 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      +||+++|++| +....+.| .+.+++.++|++.++...
T Consensus        90 ~Pt~~~~~~g-~~~~~~~g-~~~~~l~~~l~~~~~~~~  125 (130)
T 1wmj_A           90 MPTFLFIKDG-AEADKVVG-ARKDDLQNTIVKHVGATA  125 (130)
T ss_dssp             SCCCCBCTTT-TCCBCCCT-TCTTTHHHHHHHHTSSSC
T ss_pred             cceEEEEeCC-eEEEEEeC-CCHHHHHHHHHHHHhccC
Confidence            9999999766 45566777 588999999998876543

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.63  E-value=2.6e-16  Score=133.18  Aligned_cols=103  Identities=17%  Similarity=0.286  Sum_probs=88.2

Q ss_pred             CCeEEc-ChhhHHHHhcC---CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           23 DDVVVL-TEDNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        23 ~~v~~l-~~~~f~~~~~~---~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      ..+..+ +.++|.+.+..   +++++|+||++||++|+.+.|.|.++++.+   +.+.|+.||++ ++.++.+|+|.++|
T Consensus        99 g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~---~~v~f~~vd~~-~~~l~~~~~i~~~P  174 (217)
T 2trc_P           99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY---PMVKFCKIRAS-NTGAGDRFSSDVLP  174 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC---TTSEEEEEEHH-HHTCSTTSCGGGCS
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHC---CCeEEEEEECC-cHHHHHHCCCCCCC
Confidence            457888 88999998843   389999999999999999999999999988   46999999999 88899999999999


Q ss_pred             eEEEccCCCCCcccccCCCC-------HHHHHHHHhccC
Q 018270           99 TIQWFPKGSLEPKKYEGPRS-------TEALAEYVNNEG  130 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g~~~-------~~~i~~~i~~~~  130 (358)
                      |+++|.+|. ....+.|..+       .++|..||.+..
T Consensus       175 Tl~~~~~G~-~v~~~~G~~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          175 TLLVYKGGE-LISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEEEETTE-EEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEEEECCE-EEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence            999998664 3467777665       489999998753

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.62  E-value=1e-15  Score=131.26  Aligned_cols=105  Identities=21%  Similarity=0.264  Sum_probs=87.8

Q ss_pred             CCCCceEc-CcccHHHHHhc--CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc
Q 018270          139 VPSNVVVL-TADNFDEIVLD--KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG  215 (358)
Q Consensus       139 ~~~~v~~l-~~~~f~~~~~~--~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~  215 (358)
                      ....+.++ +..+|.+.+..  .+++|+|.||++||++|+.+.|.|.++|..+.   ++.|+.||++. ..++.+|+|.+
T Consensus       110 ~~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~---~v~f~kVd~d~-~~l~~~~~I~~  185 (245)
T 1a0r_P          110 RYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIKASN-TGAGDRFSSDV  185 (245)
T ss_dssp             CCCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT---TSEEEEEEHHH-HCCTTSSCTTT
T ss_pred             CCCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CCEEEEEeCCc-HHHHHHCCCCC
Confidence            34568888 78999998854  37899999999999999999999999999984   59999999987 67899999999


Q ss_pred             ccEEEEEeCCCcceeeecCC-------CCHHHHHHHHHHh
Q 018270          216 FPTLKFFPKGNKDGEEYGGG-------RDLEDFVSFINEK  248 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~-------~~~~~l~~~i~~~  248 (358)
                      +||+++|++|. ....+.|.       ++.+.|..||.++
T Consensus       186 ~PTll~~~~G~-~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          186 LPTLLVYKGGE-LLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             CSEEEEEETTE-EEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             CCEEEEEECCE-EEEEEeCCcccccccccHHHHHHHHHHc
Confidence            99999999774 34444442       5678899999864

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.61  E-value=1.1e-15  Score=119.38  Aligned_cols=90  Identities=23%  Similarity=0.421  Sum_probs=78.9

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHH--HHHHHhcCCCCeEEEEEeC---cccHHHHHhcCC---CcccEEEEEeCCCcc
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYE--KVAAAFTLEDDVVVANLDA---DKYKDLAEKYGV---SGFPTLKFFPKGNKD  228 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~--~la~~~~~~~~v~~~~vd~---~~~~~l~~~~~v---~~~Pti~~~~~g~~~  228 (358)
                      ..+++++|.||++||++|+.+.|.+.  +++..+.  +++.++.||+   +.+.+++++|+|   .++||+++|..+++.
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~--~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~  104 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIA--KHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKV  104 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHH--HHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhc--CCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCE
Confidence            46899999999999999999999999  9999885  4699999999   889999999999   999999999655566


Q ss_pred             eeeecC-------CCCHHHHHHHHHHh
Q 018270          229 GEEYGG-------GRDLEDFVSFINEK  248 (358)
Q Consensus       229 ~~~~~g-------~~~~~~l~~~i~~~  248 (358)
                      ...+.|       ..+.+++.+|+++.
T Consensus       105 ~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          105 RYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EEEecCCcccccccCCHHHHHHHHHHh
Confidence            667777       57899999998764

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.61  E-value=1.4e-15  Score=108.89  Aligned_cols=82  Identities=21%  Similarity=0.374  Sum_probs=73.3

Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHH
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED  240 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~  240 (358)
                      ..++.||++||++|+.+.|.++++++.+.  +++.++.+|++++.+++++|||.++||+++  +|.  . ++.|..+.++
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~--~-~~~G~~~~~~   75 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV--V-RFVGAPSREE   75 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHC--SSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT--E-EEECSSCCHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCE--E-EEccCCCHHH
Confidence            36899999999999999999999999985  479999999999999999999999999998  553  2 7889899999


Q ss_pred             HHHHHHHhc
Q 018270          241 FVSFINEKC  249 (358)
Q Consensus       241 l~~~i~~~~  249 (358)
                      +.++|++.+
T Consensus        76 l~~~l~~~l   84 (85)
T 1nho_A           76 LFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999998754

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.61  E-value=8.7e-16  Score=113.58  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=85.7

Q ss_pred             CCeEEc-ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccC-
Q 018270           23 DDVVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQG-   96 (358)
Q Consensus        23 ~~v~~l-~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~-   96 (358)
                      ..+..+ |.++|+++++++++++|.|+|.|||+|+.+.|.|+++++.    +++.++.+|.++.++    ++.+|||.+ 
T Consensus         6 ~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~----~~v~~~~vdVde~r~~Sn~IA~~~~V~h~   81 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE----RDMDGYYLIVQQERDLSDYIAKKTNVKHE   81 (112)
T ss_dssp             GCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH----HTCCEEEEEGGGGHHHHHHHHHHHTCCCC
T ss_pred             cceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc----CCceEEEEEeecCchhhHHHHHHhCCccC
Confidence            355666 5678999998899999999999999999999999999873    568999999999977    799999995 


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHH
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYV  126 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i  126 (358)
                      .|++++|++|......-.+..+.+.+.+.+
T Consensus        82 sPq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           82 SPQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             SSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             CCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence            999999999876655567888888887765

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.61  E-value=1.2e-15  Score=109.20  Aligned_cols=82  Identities=28%  Similarity=0.453  Sum_probs=73.6

Q ss_pred             CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHH
Q 018270          160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  239 (358)
Q Consensus       160 ~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~  239 (358)
                      .++++.||++||++|+.+.|.++++++.+.  +++.++.+|++++.+++++||+.++||+++  +| + . .+.|..+.+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G-~-~-~~~G~~~~~   75 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP--DAVEVEYINVMENPQKAMEYGIMAVPTIVI--NG-D-V-EFIGAPTKE   75 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCS--SSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TT-E-E-ECCSSSSSH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHCCCcccCEEEE--CC-E-E-eeecCCCHH
Confidence            467999999999999999999999999885  479999999999999999999999999998  55 2 2 788989999


Q ss_pred             HHHHHHHHh
Q 018270          240 DFVSFINEK  248 (358)
Q Consensus       240 ~l~~~i~~~  248 (358)
                      ++.++|++.
T Consensus        76 ~l~~~l~~~   84 (85)
T 1fo5_A           76 ALVEAIKKR   84 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999865

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.61  E-value=1.3e-15  Score=130.57  Aligned_cols=104  Identities=17%  Similarity=0.246  Sum_probs=87.0

Q ss_pred             CCeEEc-ChhhHHHHhc---CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           23 DDVVVL-TEDNFEKEVG---QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        23 ~~v~~l-~~~~f~~~~~---~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      ..|..+ +.++|.+.+.   .+++++|+||++||++|+.+.|.|.+++..+.   .+.|+.||++. ..++.+|+|.++|
T Consensus       112 G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~---~v~f~kVd~d~-~~l~~~~~I~~~P  187 (245)
T 1a0r_P          112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIKASN-TGAGDRFSSDVLP  187 (245)
T ss_dssp             CSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT---TSEEEEEEHHH-HCCTTSSCTTTCS
T ss_pred             CeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CCEEEEEeCCc-HHHHHHCCCCCCC
Confidence            467888 7899999884   37899999999999999999999999999984   49999999987 7799999999999


Q ss_pred             eEEEccCCCCCcccccCC-------CCHHHHHHHHhccCC
Q 018270           99 TIQWFPKGSLEPKKYEGP-------RSTEALAEYVNNEGG  131 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g~-------~~~~~i~~~i~~~~~  131 (358)
                      |+++|.+|... ..+.|.       ++.+.|..||.+...
T Consensus       188 Tll~~~~G~~v-~~~vG~~~~~g~~~~~e~Le~~L~~~g~  226 (245)
T 1a0r_P          188 TLLVYKGGELL-SNFISVTEQLAEEFFTGDVESFLNEYGL  226 (245)
T ss_dssp             EEEEEETTEEE-EEETTGGGGSCTTCCHHHHHHHHHTTTC
T ss_pred             EEEEEECCEEE-EEEeCCcccccccccHHHHHHHHHHcCC
Confidence            99999866432 344332       467889999987643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.61  E-value=2.6e-14  Score=137.25  Aligned_cols=183  Identities=11%  Similarity=0.121  Sum_probs=138.9

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCC
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR  117 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~  117 (358)
                      .-.+++-+.++.+.|..|.++...++++++.-   +++.+-..| + . .       ...|++.+.++|....++|.|..
T Consensus        16 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s---~~i~~~~~~-~-~-~-------~~~p~~~~~~~~~~~~i~f~g~p   82 (521)
T 1hyu_A           16 KLTKPVELIATLDDSAKSAEIKELLAEIAELS---DKVTFKEDN-T-L-P-------VRKPSFLITNPGSQQGPRFAGSP   82 (521)
T ss_dssp             TCCSCEEEEEECCSSHHHHHHHHHHHHHHTTC---TTEEEEECT-T-S-S-------SCSSEEEEECTTCCCSCEEESCC
T ss_pred             hCCCCEEEEEEeCCCcchHHHHHHHHHHHHhC---CceEEEEcC-C-c-c-------cCCCEEEEecCCCcceEEEeccC
Confidence            33567877888888999999999999987653   456663322 1 1 0       57899999987766668998877


Q ss_pred             CHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEE
Q 018270          118 STEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA  197 (358)
Q Consensus       118 ~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~  197 (358)
                      .=.++..|+....+..       ..-..++.+.++.+........++.||++||++|+.+.|.+++++..+   +++.+.
T Consensus        83 ~g~e~~s~~~~l~~~~-------~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~---~~v~~~  152 (521)
T 1hyu_A           83 LGHEFTSLVLALLWTG-------GHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN---PRIKHT  152 (521)
T ss_dssp             CGGGHHHHHHHHHHHT-------TCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC---TTEEEE
T ss_pred             cchhHHHHHHHHHhhc-------CCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHc---CceEEE
Confidence            6666777666532211       111236777777775445667799999999999999999999999886   379999


Q ss_pred             EEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          198 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       198 ~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      .+|.+.+++++++|+|.++||+++  +| +..  ..|..+.++|.+|+...
T Consensus       153 ~vd~~~~~~~~~~~~i~svPt~~i--~g-~~~--~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          153 AIDGGTFQNEITERNVMGVPAVFV--NG-KEF--GQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             EEETTTCHHHHHHTTCCSSSEEEE--TT-EEE--EESCCCHHHHHHHHCCS
T ss_pred             EEechhhHHHHHHhCCCccCEEEE--CC-EEE--ecCCCCHHHHHHHHhhc
Confidence            999999999999999999999977  55 322  34889999999998653

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.60  E-value=2.4e-15  Score=123.02  Aligned_cols=102  Identities=13%  Similarity=0.242  Sum_probs=84.0

Q ss_pred             EEcChhhHHHHh----cCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccchhh----------
Q 018270           26 VVLTEDNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHKSL----------   88 (358)
Q Consensus        26 ~~l~~~~f~~~~----~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l----------   88 (358)
                      ...+..+|++.+    .++++++|.|||+||++|+.+.+.+   .++.+.++  .++.++.||+++..++          
T Consensus        29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~--~~~~~v~v~~d~~~~~~~~~~~~~~~  106 (172)
T 3f9u_A           29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIIN--NDYVLITLYVDNKTPLTEPVKIMENG  106 (172)
T ss_dssp             CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHH--HHCEEEEEETTCCCEEEEEEEEEETT
T ss_pred             cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CCEEEEEEecCcccccchhhhhhhcc
Confidence            445667777766    6789999999999999999986555   66666665  3699999999877655          


Q ss_pred             ----------------HhhcCccCCCeEEEccCCCCCcccccCCCC-HHHHHHHHhcc
Q 018270           89 ----------------CSKYGVQGYPTIQWFPKGSLEPKKYEGPRS-TEALAEYVNNE  129 (358)
Q Consensus        89 ----------------~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~-~~~i~~~i~~~  129 (358)
                                      +++|+|.++||+++|+++|....++.|..+ .+++.++|.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~  164 (172)
T 3f9u_A          107 TERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTG  164 (172)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHH
Confidence                            789999999999999777767678889998 99999999865

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.60  E-value=1.8e-15  Score=108.33  Aligned_cols=82  Identities=23%  Similarity=0.434  Sum_probs=73.4

Q ss_pred             CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270           41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE  120 (358)
Q Consensus        41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~  120 (358)
                      .+.+|.||++||++|+.+.|.+.++++.++  +++.++.+|++++++++++|++.++|++++  +|. .  ++.|..+.+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~-~--~~~G~~~~~   75 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP--DAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGD-V--EFIGAPTKE   75 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCS--SSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTE-E--ECCSSSSSH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHCCCcccCEEEE--CCE-E--eeecCCCHH
Confidence            568999999999999999999999999886  579999999999999999999999999998  432 2  788988999


Q ss_pred             HHHHHHhcc
Q 018270          121 ALAEYVNNE  129 (358)
Q Consensus       121 ~i~~~i~~~  129 (358)
                      ++.+++++.
T Consensus        76 ~l~~~l~~~   84 (85)
T 1fo5_A           76 ALVEAIKKR   84 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999754

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.60  E-value=2.7e-15  Score=115.58  Aligned_cols=101  Identities=20%  Similarity=0.297  Sum_probs=83.9

Q ss_pred             ceEcCcccHHHHHhc-CCCcEEEEEcCC-------CCcccchhhhhHHHHHHHhcCCCCeEEEEEeC-------cccHHH
Q 018270          143 VVVLTADNFDEIVLD-KSKDVLVEFYAP-------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-------DKYKDL  207 (358)
Q Consensus       143 v~~l~~~~f~~~~~~-~~~~v~v~f~a~-------~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~-------~~~~~l  207 (358)
                      +...+.++|++.+.. .+++++|.||++       ||++|+.+.|.+.++++.+.  +++.++.+|+       +.+..+
T Consensus         7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~--~~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A            7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS--EGCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC--TTEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC--CCcEEEEEECCCchhhhchhHHH
Confidence            455678999998855 589999999999       99999999999999999885  4799999999       778889


Q ss_pred             HHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          208 AEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       208 ~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      +++|+|.++||+++|.+++. ...+.| .+.+.|.+||++
T Consensus        85 ~~~~~i~~~Pt~~~~~~~~~-~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           85 RKNLKVTAVPTLLKYGTPQK-LVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHHCCCSSSEEEETTSSCE-EEGGGG-GCHHHHHHHHHC
T ss_pred             HHHCCCCeeCEEEEEcCCce-Eecccc-CCHHHHHHHHhc
Confidence            99999999999999987532 222333 577888888864

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.58  E-value=2.6e-15  Score=107.41  Aligned_cols=81  Identities=23%  Similarity=0.394  Sum_probs=72.6

Q ss_pred             cEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHH
Q 018270           42 GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA  121 (358)
Q Consensus        42 ~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~  121 (358)
                      ..+|.||++||++|+.+.|.+.++++.++  +++.++.+|++++++++++|+|.++|++++  +|. .  ++.|..+.++
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~-~--~~~G~~~~~~   75 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV-V--RFVGAPSREE   75 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHC--SSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT-E--EEECSSCCHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCE-E--EEccCCCHHH
Confidence            46899999999999999999999999986  479999999999999999999999999998  432 2  7889889999


Q ss_pred             HHHHHhcc
Q 018270          122 LAEYVNNE  129 (358)
Q Consensus       122 i~~~i~~~  129 (358)
                      +.+++++.
T Consensus        76 l~~~l~~~   83 (85)
T 1nho_A           76 LFEAINDE   83 (85)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999865

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.58  E-value=2.5e-15  Score=111.09  Aligned_cols=99  Identities=19%  Similarity=0.241  Sum_probs=82.9

Q ss_pred             CceEc-CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH----HHHhcCCC-c
Q 018270          142 NVVVL-TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVS-G  215 (358)
Q Consensus       142 ~v~~l-~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~-~  215 (358)
                      .+..+ +.++|++++ ..+++++|+|+|+|||+|+.+.|.++++++.    +++.++.+|.+++++    ++.+|||. .
T Consensus         7 ~~~~i~s~e~f~~ii-~~~~~vvi~khatwCgpc~~~~~~~e~~~~~----~~v~~~~vdVde~r~~Sn~IA~~~~V~h~   81 (112)
T 3iv4_A            7 VAIKLSSIDQFEQVI-EENKYVFVLKHSETCPISANAYDQFNKFLYE----RDMDGYYLIVQQERDLSDYIAKKTNVKHE   81 (112)
T ss_dssp             CEEECCSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHH----HTCCEEEEEGGGGHHHHHHHHHHHTCCCC
T ss_pred             ceeecCCHHHHHHHH-hcCCCEEEEEECCcCHhHHHHHHHHHHHhcc----CCceEEEEEeecCchhhHHHHHHhCCccC
Confidence            34556 457899988 4589999999999999999999999999883    468899999998876    89999999 5


Q ss_pred             ccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          216 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      .|++++|++|......-.+..+.++|.+.+
T Consensus        82 sPq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           82 SPQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             SSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             CCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence            999999999965555567788888887654

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.58  E-value=3.2e-13  Score=117.13  Aligned_cols=207  Identities=10%  Similarity=0.084  Sum_probs=159.8

Q ss_pred             CCCeEEcC-hhhHHHHhcC-CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCe
Q 018270           22 ADDVVVLT-EDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        22 ~~~v~~l~-~~~f~~~~~~-~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      ...+..++ .++++++++. ++.++|-|+.++   |....+.|.++|+.++  +++.|+.+.   +.++++++++.. |+
T Consensus         5 gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~~---~~~~~~~F~~~A~~lr--~~~~F~~t~---~~~v~~~~~v~~-p~   75 (250)
T 3ec3_A            5 SPPSKEILTLKQVQEFLKDGDDVVILGVFQGV---GDPGYLQYQDAANTLR--EDYKFHHTF---STEIAKFLKVSL-GK   75 (250)
T ss_dssp             CCSSEECCCHHHHHHHHHHCSSCEEEEECSCT---TCHHHHHHHHHHHHHT--TTCCEEEEC---CHHHHHHHTCCS-SE
T ss_pred             CCCceecCCHHHHHHHHhcCCCeEEEEEEcCC---CchHHHHHHHHHHhhh--cCcEEEEEC---cHHHHHHcCCCC-Ce
Confidence            45677775 4889888877 899999999987   5678899999999987  668888765   577889999988 99


Q ss_pred             EEEccCC------CCCccccc--CCCCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHHHHhcCCCcEEEEEcCC-C
Q 018270          100 IQWFPKG------SLEPKKYE--GPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAP-W  170 (358)
Q Consensus       100 l~~~~~~------~~~~~~~~--g~~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~-~  170 (358)
                      +++|+++      ......|.  |.++.+.|.+|+....-         ..+.+++.+|+....  .+++.++.|+.+ +
T Consensus        76 ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~---------Plv~e~t~~n~~~~~--~~~~l~~~~~~~d~  144 (250)
T 3ec3_A           76 LVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL---------PLVGHRKTSNDAKRY--SKRPLVVVYYSVDF  144 (250)
T ss_dssp             EEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSS---------CTEEEECTTTHHHHS--CSSSEEEEEECCCC
T ss_pred             EEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCC---------CceeecCccchhhhh--ccCccEEEEEeccc
Confidence            9999863      12336787  47899999999998743         347789999998876  367777777753 3


Q ss_pred             C---c-ccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc--c-cEEEEEeCCCcceeeec-CCCCHHHHH
Q 018270          171 C---G-HCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--F-PTLKFFPKGNKDGEEYG-GGRDLEDFV  242 (358)
Q Consensus       171 C---~-~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pti~~~~~g~~~~~~~~-g~~~~~~l~  242 (358)
                      +   . ....+...+.++|+.++   ++.|+.+|.++....++.||+..  + |.++++..++ ..+.+. +..+.+.|.
T Consensus       145 ~~~~~~~~~~~~~~~~~vAk~~k---ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~~-~ky~~~~~~~t~~~i~  220 (250)
T 3ec3_A          145 SFDYRTATQFWRNKVLEVAKDFP---EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDESG-KKFAMEPEEFDSDALR  220 (250)
T ss_dssp             STTTHHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTTS-CEEECCCCSCCHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhhc---ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCCC-ceecCCcccCCHHHHH
Confidence            2   2 23457889999999986   69999999998888889999974  4 4777665433 344454 678999999


Q ss_pred             HHHHHhcCCC
Q 018270          243 SFINEKCGTS  252 (358)
Q Consensus       243 ~~i~~~~~~~  252 (358)
                      +|+++.....
T Consensus       221 ~Fv~~~~~Gk  230 (250)
T 3ec3_A          221 EFVMAFKKGK  230 (250)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHCCC
Confidence            9999987544

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.58  E-value=3e-15  Score=122.42  Aligned_cols=104  Identities=18%  Similarity=0.326  Sum_probs=81.5

Q ss_pred             eEcCcccHHHHHh---cCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcccHHH----------
Q 018270          144 VVLTADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDL----------  207 (358)
Q Consensus       144 ~~l~~~~f~~~~~---~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~l----------  207 (358)
                      ...+..+|++.+.   ..+++++|.|||+||++|+.+.+.+   .++.+.+.  .++.++.||+++..++          
T Consensus        29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~--~~~~~v~v~~d~~~~~~~~~~~~~~~  106 (172)
T 3f9u_A           29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIIN--NDYVLITLYVDNKTPLTEPVKIMENG  106 (172)
T ss_dssp             CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHH--HHCEEEEEETTCCCEEEEEEEEEETT
T ss_pred             cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CCEEEEEEecCcccccchhhhhhhcc
Confidence            3356677777663   5689999999999999999974433   55555553  2689999999876544          


Q ss_pred             ----------------HHhcCCCcccEEEEEeCCCcceeeecCCCC-HHHHHHHHHHhc
Q 018270          208 ----------------AEKYGVSGFPTLKFFPKGNKDGEEYGGGRD-LEDFVSFINEKC  249 (358)
Q Consensus       208 ----------------~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~-~~~l~~~i~~~~  249 (358)
                                      +++|+|.++||++++..+|+...++.|..+ .+++.++|++.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          107 TERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence                            789999999999999666666777789988 999999998754

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.34  E-value=2.4e-16  Score=122.68  Aligned_cols=101  Identities=16%  Similarity=0.274  Sum_probs=84.5

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccCCCeEEEcc
Q 018270           30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      .+.+.....++++++|+||++||++|+.+.|.+   .++++.++  +.+.++.||++  ++.+++++|+|.++|++++|+
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d   86 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE--ARFVVASVSVDTPEGQELARRYRVPGTPTFVFLV   86 (130)
Confidence            445666667889999999999999999999999   88888876  46889999994  668899999999999999996


Q ss_pred             C-CCCC--cccccCCCCHHHHHHHHhccCCC
Q 018270          105 K-GSLE--PKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       105 ~-~~~~--~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      + ++..  ..++.|..+.+.+.++|++..+.
T Consensus        87 ~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           87 PKAGAWEEVGRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence            3 3444  46789999999999999886543

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.56  E-value=1.3e-14  Score=124.31  Aligned_cols=101  Identities=19%  Similarity=0.244  Sum_probs=88.8

Q ss_pred             CCeEEcChhhHHHHhcCCCcE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..+..+++++|+.+++.++++ +|.||++||++|+.+.|.+.+++..+   +.+.++.+|++++++++++|+|.++|+++
T Consensus       118 ~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~---~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  194 (229)
T 2ywm_A          118 QRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN---DYITSKVIDASENQDLAEQFQVVGVPKIV  194 (229)
T ss_dssp             TTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC---TTEEEEEEEGGGCHHHHHHTTCCSSSEEE
T ss_pred             CCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC---CCeEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            346788999999988666666 88999999999999999999999987   46999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +  +|.  ..++.|.++.+++.+|+.+..
T Consensus       195 ~--~G~--~~~~~G~~~~~~l~~~l~~~~  219 (229)
T 2ywm_A          195 I--NKG--VAEFVGAQPENAFLGYIMAVY  219 (229)
T ss_dssp             E--GGG--TEEEESCCCHHHHHHHHHHHH
T ss_pred             E--CCE--EEEeeCCCCHHHHHHHHHHHh
Confidence            8  443  367999999999999998764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.56  E-value=1.1e-14  Score=116.76  Aligned_cols=91  Identities=16%  Similarity=0.294  Sum_probs=77.6

Q ss_pred             cCCCcEEEEEE-CCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccch-----------hhHhhcCccCCCeEEE
Q 018270           38 GQDRGALVEFY-APWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHK-----------SLCSKYGVQGYPTIQW  102 (358)
Q Consensus        38 ~~~~~~lv~fy-a~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~-----------~l~~~~~i~~~P~l~~  102 (358)
                      .++++++|+|| ++||++|+.+.|.+   .++.+.++  .++.++.+|++...           +++++|+|.++|++++
T Consensus        45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~--~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~  122 (154)
T 2ju5_A           45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG--VHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVF  122 (154)
T ss_dssp             HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH--HHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEE
T ss_pred             hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc--CcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEE
Confidence            56899999999 99999999999999   77766654  46899999997654           8999999999999999


Q ss_pred             ccCCCCCcccccCCC--CHHHHHHHHhccCC
Q 018270          103 FPKGSLEPKKYEGPR--STEALAEYVNNEGG  131 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~--~~~~i~~~i~~~~~  131 (358)
                      ++++|....++ |..  +.+.+.++|.+..+
T Consensus       123 ~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          123 IDAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             ECTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             EcCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            97766666777 988  89999999987543

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.32  E-value=3.1e-16  Score=122.02  Aligned_cols=95  Identities=24%  Similarity=0.397  Sum_probs=80.4

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEe-CCCcc--
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFP-KGNKD--  228 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~-~g~~~--  228 (358)
                      ..+++++|.||++||++|+.+.|.+   .++++.+.  .++.++.+|++  ++..++++|+|.++||+++|. .+++.  
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~   94 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE--ARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEE   94 (130)
Confidence            5678999999999999999999999   88888774  46888899984  667899999999999999995 23445  


Q ss_pred             eeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          229 GEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       229 ~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      ..++.|..+.+.|.++|++.++...
T Consensus        95 ~~~~~G~~~~~~l~~~l~~~~~~~~  119 (130)
T 2lst_A           95 VGRLFGSRPRAEFLKELRQVCVKGG  119 (130)
Confidence            6678999999999999998876543

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.54  E-value=3.5e-15  Score=111.47  Aligned_cols=77  Identities=27%  Similarity=0.465  Sum_probs=64.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc------cchhhHhhcCccCCCeEEEccCCCCCccc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD------EHKSLCSKYGVQGYPTIQWFPKGSLEPKK  112 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~------~~~~l~~~~~i~~~P~l~~~~~~~~~~~~  112 (358)
                      .+++++|.|||+||++|+.+.|.|+++++.++        .|||+      +++++|++|+|.++||+++  +|    ..
T Consensus        11 ~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~--------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G----~~   76 (106)
T 3kp8_A           11 LRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPGTPQAQECTEAGITSYPTWII--NG----RT   76 (106)
T ss_dssp             HHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TT----EE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC--------EEEEecccccchhHHHHHHcCCeEeCEEEE--CC----EE
Confidence            35678999999999999999999999987663        45665      6788999999999999887  33    24


Q ss_pred             ccCCCCHHHHHHHHhcc
Q 018270          113 YEGPRSTEALAEYVNNE  129 (358)
Q Consensus       113 ~~g~~~~~~i~~~i~~~  129 (358)
                      |.|.++.+++.+|+.-.
T Consensus        77 ~~G~~~~~~l~~~~~~~   93 (106)
T 3kp8_A           77 YTGVRSLEALAVASGYP   93 (106)
T ss_dssp             EESCCCHHHHHHHHTCC
T ss_pred             ecCCCCHHHHHHHhCCc
Confidence            89999999999998654

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.53  E-value=3e-15  Score=111.85  Aligned_cols=78  Identities=18%  Similarity=0.322  Sum_probs=63.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc----ccHHHHHhcCCCcccEEEEEeCCCcceeeec
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD----KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG  233 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~  233 (358)
                      .++.++|.|||+||++|+.+.|.|+++++.+.      ++.++.+    .+.+++++|+|.++||+++  +|.    .|.
T Consensus        11 ~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~----~~~   78 (106)
T 3kp8_A           11 LRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR----TYT   78 (106)
T ss_dssp             HHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE----EEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE----Eec
Confidence            35667999999999999999999999997763      3333322    5788999999999999777  552    489


Q ss_pred             CCCCHHHHHHHHHH
Q 018270          234 GGRDLEDFVSFINE  247 (358)
Q Consensus       234 g~~~~~~l~~~i~~  247 (358)
                      |.++.++|.+|+.-
T Consensus        79 G~~~~~~l~~~~~~   92 (106)
T 3kp8_A           79 GVRSLEALAVASGY   92 (106)
T ss_dssp             SCCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHhCC
Confidence            99999999999853

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.53  E-value=7.9e-15  Score=118.85  Aligned_cols=98  Identities=15%  Similarity=0.238  Sum_probs=79.3

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh-hHhhcCc--cCCCeEEEccCCC
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS-LCSKYGV--QGYPTIQWFPKGS  107 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i--~~~P~l~~~~~~~  107 (358)
                      ++|.....++++++|.||++||++|+.+.|.|.++++...  ..+.|+.||++.+.. ++..|++  .++||+++|+.++
T Consensus        37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G  114 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE--LSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSG  114 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH--HHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTS
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhh--cCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCC
Confidence            5676667788999999999999999999999999877654  346677888887776 8889998  6699999996555


Q ss_pred             CCcccccCC----------CCHHHHHHHHhccC
Q 018270          108 LEPKKYEGP----------RSTEALAEYVNNEG  130 (358)
Q Consensus       108 ~~~~~~~g~----------~~~~~i~~~i~~~~  130 (358)
                      ....++.|.          .+.+++.++|++..
T Consensus       115 ~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          115 KVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             CBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            555667774          78899999887653

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.53  E-value=1.5e-14  Score=117.05  Aligned_cols=95  Identities=9%  Similarity=0.058  Sum_probs=74.7

Q ss_pred             cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcC---CCcccEEEEE
Q 018270          146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG---VSGFPTLKFF  222 (358)
Q Consensus       146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~---v~~~Pti~~~  222 (358)
                      ++...+..+....+++++|.|||+||+||+.+.|.+.++++.+   +++.+..||.+++++++.+|+   +.++||+++|
T Consensus        41 ~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~---~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~  117 (167)
T 1z6n_A           41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQ---PNIELAIISKGRAEDDLRQRLALERIAIPLVLVL  117 (167)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC---TTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred             CCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHC---CCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEE
Confidence            4555555544335788999999999999999999999999876   369999999999999999997   9999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHH
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      ++|++...++ |++. ..+.+.+
T Consensus       118 ~~~G~~~~~~-g~~p-~~~~~~i  138 (167)
T 1z6n_A          118 DEEFNLLGRF-VERP-QAVLDGG  138 (167)
T ss_dssp             CTTCCEEEEE-ESSC-HHHHHHC
T ss_pred             CCCCCEEEEE-cCCC-HHHHHhH
Confidence            9876655555 4433 3344443

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.53  E-value=2.5e-14  Score=114.66  Aligned_cols=99  Identities=19%  Similarity=0.347  Sum_probs=80.5

Q ss_pred             ccHHHHHh---cCCCcEEEEEc-CCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCccc-----------HHHHHh
Q 018270          149 DNFDEIVL---DKSKDVLVEFY-APWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKY-----------KDLAEK  210 (358)
Q Consensus       149 ~~f~~~~~---~~~~~v~v~f~-a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~-----------~~l~~~  210 (358)
                      .++.+.+.   ..+++++|.|| ++||++|+.+.|.+   .++.+.+.  .++.++.+|++..           ..++++
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~--~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~  111 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG--VHLHMVEVDFPQKNHQPEEQRQKNQELKAQ  111 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH--HHCEEEEEECCSSCCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc--CcEEEEEecCccccCCChhhHhhHHHHHHH
Confidence            44554442   45789999999 99999999999999   77766553  4689999998764           489999


Q ss_pred             cCCCcccEEEEEeCCCcceeeecCCC--CHHHHHHHHHHhcC
Q 018270          211 YGVSGFPTLKFFPKGNKDGEEYGGGR--DLEDFVSFINEKCG  250 (358)
Q Consensus       211 ~~v~~~Pti~~~~~g~~~~~~~~g~~--~~~~l~~~i~~~~~  250 (358)
                      |+|.++||++++..+|+....+ |..  +.+.+.++|++.++
T Consensus       112 ~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          112 YKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             TTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            9999999999996665666777 888  99999999988765

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.52  E-value=9.3e-15  Score=109.64  Aligned_cols=90  Identities=19%  Similarity=0.224  Sum_probs=68.4

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC---CCeEEEEEeCccc--HHHHHhcCCCcccEEEEEeCCCcceee
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE---DDVVVANLDADKY--KDLAEKYGVSGFPTLKFFPKGNKDGEE  231 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~---~~v~~~~vd~~~~--~~l~~~~~v~~~Pti~~~~~g~~~~~~  231 (358)
                      ++...++|+|||+||++|+.+.+.+.   ..+...   ..+.+.++|++.+  .+++.+|+|.+.||+++|.+| ++..+
T Consensus        16 ~~~~~~LV~F~A~wC~~Ck~~~~~i~---~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G-~ev~R   91 (116)
T 3dml_A           16 DKAELRLLMFEQPGCLYCARWDAEIA---PQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGD-VESGR   91 (116)
T ss_dssp             ---CEEEEEEECTTCHHHHHHHHHTT---TTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETT-EEEEE
T ss_pred             ccCCCEEEEEECCCCHHHHHHHHHHH---hhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECC-EEEee
Confidence            35578999999999999999975332   222211   1256777777764  578999999999999999965 57778


Q ss_pred             ecCCCCHHHHHHHHHHhcC
Q 018270          232 YGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       232 ~~g~~~~~~l~~~i~~~~~  250 (358)
                      ..|..+.+.|..||++.++
T Consensus        92 i~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           92 LEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             EECCCCHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHh
Confidence            9999999999999987643

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.52  E-value=4.8e-14  Score=110.11  Aligned_cols=100  Identities=19%  Similarity=0.360  Sum_probs=83.5

Q ss_pred             EEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------
Q 018270           26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------   84 (358)
Q Consensus        26 ~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------   84 (358)
                      ..++.+.+......+++++|.||++||++|+...|.+.++++.++   .+.++.|+++.                     
T Consensus        10 ~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   86 (136)
T 1lu4_A           10 TTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLND   86 (136)
T ss_dssp             EBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEEC
T ss_pred             ecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcCCCceEEEC
Confidence            334444443333467899999999999999999999999999985   68899999877                     


Q ss_pred             -chhhHhhcCccCCCeEEEccCCCCCccccc---CCCCHHHHHHHHhcc
Q 018270           85 -HKSLCSKYGVQGYPTIQWFPKGSLEPKKYE---GPRSTEALAEYVNNE  129 (358)
Q Consensus        85 -~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~---g~~~~~~i~~~i~~~  129 (358)
                       +..+++.|++.++|+++++++++... .+.   |..+.+++.+++++.
T Consensus        87 ~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           87 ADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             TTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC
T ss_pred             CchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHH
Confidence             67899999999999999998777665 788   999999999999865

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.51  E-value=4.5e-15  Score=111.34  Aligned_cols=91  Identities=14%  Similarity=0.131  Sum_probs=69.1

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc--hhhHhhcCccCCCeEEEccCCCCCcccccCC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH--KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP  116 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~  116 (358)
                      +...++|+|||+||++|+.+.+.+....+.......+.+.+||.+.+  .+++.+|+|.++||+++|++|. ...+..|.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~-ev~Ri~G~   95 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDV-ESGRLEGY   95 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTE-EEEEEECC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCE-EEeeecCC
Confidence            45679999999999999999875433222110002366778888775  5799999999999999999655 45799999


Q ss_pred             CCHHHHHHHHhccC
Q 018270          117 RSTEALAEYVNNEG  130 (358)
Q Consensus       117 ~~~~~i~~~i~~~~  130 (358)
                      ...+.+..|+.+..
T Consensus        96 ~~~~~f~~~L~~~l  109 (116)
T 3dml_A           96 PGEDFFWPMLARLI  109 (116)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999998753

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.50  E-value=1.6e-13  Score=108.78  Aligned_cols=105  Identities=17%  Similarity=0.262  Sum_probs=87.2

Q ss_pred             eEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC----------------------
Q 018270          144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA----------------------  201 (358)
Q Consensus       144 ~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~----------------------  201 (358)
                      ..++++.+.... ..+++++|.||++||++|+.+.|.+.++++.+...  +.++.|++                      
T Consensus        15 ~~~~g~~~~~~~-~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2b5x_A           15 AWLNGEVTREQL-IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ--LNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (148)
T ss_dssp             EEESCCCCHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--SEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             ccccCcccchhh-cCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC--cEEEEEEcCCCccccCHHHHHHHHHHcCCC
Confidence            456777776554 46789999999999999999999999999999643  88888874                      


Q ss_pred             -----cccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          202 -----DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       202 -----~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                           +.+..+++.|+|.++|+++++..+++....+.|..+.+++.++|++.+..
T Consensus        92 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A           92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             cceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence                 34567999999999999999976667777788999999999999887653

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.50  E-value=8.3e-14  Score=110.38  Aligned_cols=104  Identities=16%  Similarity=0.261  Sum_probs=86.8

Q ss_pred             EEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC-----------------------
Q 018270           26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC-----------------------   82 (358)
Q Consensus        26 ~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~-----------------------   82 (358)
                      ..++.+.+.....++++++|.||++||++|+...|.+.++++.+.+  .+.++.|++                       
T Consensus        15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   92 (148)
T 2b5x_A           15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQ   92 (148)
T ss_dssp             EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCS
T ss_pred             ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEEcCCCccccCHHHHHHHHHHcCCCc
Confidence            4566666665555789999999999999999999999999999874  388888885                       


Q ss_pred             ----ccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           83 ----DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        83 ----~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                          +.+.++++.|+|.++|+++++++++.....+.|..+.+++.++|.+...
T Consensus        93 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           93 PIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             CEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             ceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence                4456799999999999999997777666778898999999999987643

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.49  E-value=4e-14  Score=114.68  Aligned_cols=84  Identities=23%  Similarity=0.378  Sum_probs=73.0

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHH-H--HHHHHHhhcCCceEEEEEeCccchhhHhhc--------
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPE-Y--EKLGASFKKAKSVLIGKVDCDEHKSLCSKY--------   92 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~-~--~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------   92 (358)
                      .+...+++.|..+..++++++|.||++||++|+.+.|. |  .++++.++  +++.+++||.++.++++..|        
T Consensus        23 ~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~--~~fv~ikVD~de~~~l~~~y~~~~q~~~  100 (173)
T 3ira_A           23 DWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN--EAFVSIKVDREERPDIDNIYMTVCQIIL  100 (173)
T ss_dssp             CCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHH--HHCEEEEEETTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHH--hcCceeeeCCcccCcHHHHHHHHHHHHc
Confidence            45667788999988999999999999999999999993 3  57777776  46899999999999999888        


Q ss_pred             CccCCCeEEEccCCCCC
Q 018270           93 GVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        93 ~i~~~P~l~~~~~~~~~  109 (358)
                      |+.++|++++|++++..
T Consensus       101 gv~g~Pt~v~l~~dG~~  117 (173)
T 3ira_A          101 GRGGWPLNIIMTPGKKP  117 (173)
T ss_dssp             SCCCSSEEEEECTTSCE
T ss_pred             CCCCCcceeeECCCCCc
Confidence            99999999999876644

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.49  E-value=8.2e-14  Score=108.66  Aligned_cols=102  Identities=24%  Similarity=0.347  Sum_probs=83.9

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc--------------------
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--------------------   84 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--------------------   84 (358)
                      +..++.+.+......+++++|.||++||++|+...|.+.++.+.++   ++.++.|+++.                    
T Consensus        10 ~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (136)
T 1zzo_A           10 AKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQL   86 (136)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEEE
T ss_pred             cccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHcCCCceEEE
Confidence            3444444444333467899999999999999999999999999885   58888888843                    


Q ss_pred             ---chhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           85 ---HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        85 ---~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                         +..+++.|++.++|+++++++++... .+.|..+.+++.++|.+..
T Consensus        87 ~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A           87 ADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             ECTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred             EcCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence               56789999999999999998777665 8899999999999998754

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.49  E-value=1.8e-13  Score=109.15  Aligned_cols=95  Identities=19%  Similarity=0.340  Sum_probs=81.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc------------------------cHHHHHhcC-
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK------------------------YKDLAEKYG-  212 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~------------------------~~~l~~~~~-  212 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+. ..++.++.|+++.                        ...+++.|+ 
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~-~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQK-KGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSC-TTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhc-cCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            67899999999999999999999999999985 4578888888862                        345788999 


Q ss_pred             -CCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          213 -VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       213 -v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                       +.++|+++++.++++....+.|..+.++|.++|++......
T Consensus       102 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A          102 TVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             CSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred             ccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence             99999999998777778889999999999999998765543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.49  E-value=1e-13  Score=119.67  Aligned_cols=101  Identities=20%  Similarity=0.260  Sum_probs=83.9

Q ss_pred             EcChhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhh--cCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           27 VLTEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFK--KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        27 ~l~~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~--~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      .++++.++.+.+ .++++++.||++||+||+.+.|.|.+++..+.  +.+.|.++.||++++++++++|+|.++||+++ 
T Consensus       124 ~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i-  202 (243)
T 2hls_A          124 GLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI-  202 (243)
T ss_dssp             CCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE-
T ss_pred             CCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE-
Confidence            456666665543 45677999999999999999999999999884  22469999999999999999999999999988 


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                       +|.   ..|.|.++.+++.+++.+..+.
T Consensus       203 -~G~---~~~~G~~~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          203 -NGY---LVFVGVPYEEDFLDYVKSAAEG  227 (243)
T ss_dssp             -TTE---EEEESCCCHHHHHHHHHHHHTT
T ss_pred             -CCE---EEEeCCCCHHHHHHHHHHHhhc
Confidence             432   3499999999999999987654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.48  E-value=6.3e-14  Score=111.18  Aligned_cols=83  Identities=10%  Similarity=0.026  Sum_probs=61.8

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHH---HhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGA---SFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~---~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      +.+..+..++++++|.|||+||++|+.+.|.+.+..+   ..+  ..+..+.+| ++..+.+..+++.++||+++|+++|
T Consensus        35 ~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD-~e~~~~~~~~~v~~~PT~~f~~~~G  111 (151)
T 3ph9_A           35 EGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLM-HETTDKNLSPDGQYVPRIMFVDPSL  111 (151)
T ss_dssp             HHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEES-SCCSCGGGCTTCCCSSEEEEECTTS
T ss_pred             HHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEec-CCchhhHhhcCCCCCCEEEEECCCC
Confidence            3345555789999999999999999999999986432   222  234455555 2345678899999999999999666


Q ss_pred             CCcccccCC
Q 018270          108 LEPKKYEGP  116 (358)
Q Consensus       108 ~~~~~~~g~  116 (358)
                      ....+..|.
T Consensus       112 ~~v~~~~G~  120 (151)
T 3ph9_A          112 TVRADIAGR  120 (151)
T ss_dssp             CBCTTCCCS
T ss_pred             CEEEEEeCC
Confidence            666777787

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.48  E-value=1.8e-13  Score=106.83  Aligned_cols=87  Identities=20%  Similarity=0.388  Sum_probs=77.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------cHHHHHhcCCCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------YKDLAEKYGVSG  215 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~v~~  215 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+.   ++.++.|+++.                      +..++++|++.+
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~   99 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW   99 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCC
Confidence            57899999999999999999999999999985   68888888876                      568999999999


Q ss_pred             ccEEEEEeCCCcceeeec---CCCCHHHHHHHHHHh
Q 018270          216 FPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINEK  248 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~---g~~~~~~l~~~i~~~  248 (358)
                      +|+++++..+++.. .+.   |..+.+++.++|++.
T Consensus       100 ~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A          100 QPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             SSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHH
Confidence            99999997666655 888   999999999999864

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.47  E-value=1.3e-13  Score=107.46  Aligned_cols=101  Identities=20%  Similarity=0.362  Sum_probs=81.5

Q ss_pred             EcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------
Q 018270          145 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------  203 (358)
Q Consensus       145 ~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------  203 (358)
                      .++++.+.... ..+++++|.||++||++|+.+.|.+.++++.+.   ++.++.|+++.                     
T Consensus        12 ~~~g~~~~l~~-~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   87 (136)
T 1zzo_A           12 TLDGHDFHGES-LLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA   87 (136)
T ss_dssp             BTTSCEEEGGG-GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             cCCCCEeeHHH-hCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEE
Confidence            34444443322 357899999999999999999999999999985   68888888743                     


Q ss_pred             --cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          204 --YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       204 --~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                        +..+++.|+|.++|+++++..++... .+.|..+.+++.++|.+.++
T Consensus        88 d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           88 DTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             CTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             cCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence              46789999999999999997666655 88999999999999987653

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.47  E-value=3.3e-13  Score=109.15  Aligned_cols=110  Identities=20%  Similarity=0.386  Sum_probs=86.7

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhc-----------
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-----------  211 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~-----------  211 (358)
                      +..++++.+...- ..+++++|.||++||++|+.+.|.+.++++.+.. .++.++.|+++...+..++|           
T Consensus        19 l~~~~g~~~~l~~-~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~   96 (165)
T 3or5_A           19 GVTVDGKPFSSAS-LKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS-RGFTFVGIAVNEQLPNVKNYMKTQGIIYPVM   96 (165)
T ss_dssp             EECTTSCEEEGGG-GTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TTEEEEEEECSCCHHHHHHHHHHHTCCSCEE
T ss_pred             eeCCCCCEechhH-cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceE
Confidence            3334444443322 3678999999999999999999999999999963 35999999998776666666           


Q ss_pred             ----------------CCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          212 ----------------GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       212 ----------------~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                                      ++.++|+++++..+++....+.|..+.+++.++|.+.++....
T Consensus        97 ~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~  155 (165)
T 3or5_A           97 MATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAA  155 (165)
T ss_dssp             ECCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC----
T ss_pred             ecCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhcc
Confidence                            8999999999977777778889999999999999998875543

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.46  E-value=1.9e-13  Score=107.84  Aligned_cols=88  Identities=23%  Similarity=0.440  Sum_probs=77.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------------------------chhhHhhcC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------------HKSLCSKYG   93 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~   93 (358)
                      .+++++|.||++||++|+.+.|.+.++.+.++. ..+.++.|+++.                         +..+++.|+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPS-DSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCC-SSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC
Confidence            678999999999999999999999999999864 358899998854                         568999999


Q ss_pred             ccCCCeEEEccCCCCCcccccCCCCHHHHHHHHh
Q 018270           94 VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus        94 i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~  127 (358)
                      +.++|+++++++++.....+.|..+.+++.++|+
T Consensus       112 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          112 IITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             CCEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred             cCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence            9999999999877767678899999999998874

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.46  E-value=2.4e-13  Score=109.88  Aligned_cols=107  Identities=17%  Similarity=0.269  Sum_probs=87.4

Q ss_pred             CeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe----------------------
Q 018270           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD----------------------   81 (358)
Q Consensus        24 ~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd----------------------   81 (358)
                      .+.+++.+.+......+++++|.||++||++|+.+.|.+.+++++++.. .+.++.|+                      
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  100 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS-SANLITVASPGFLHEKKDGEFQKWYAGLNY  100 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CcEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence            6677777777665567899999999999999999999999999987542 35544443                      


Q ss_pred             ------CccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           82 ------CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        82 ------~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                            ++.+.++++.|+|.++|++++++.++.....+.|..+.+++.++|++...
T Consensus       101 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             CcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                  34456789999999999999997777666778899999999999998754

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.46  E-value=1e-13  Score=112.06  Aligned_cols=96  Identities=10%  Similarity=0.023  Sum_probs=74.9

Q ss_pred             EcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcC---ccCCCeEEE
Q 018270           27 VLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYG---VQGYPTIQW  102 (358)
Q Consensus        27 ~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~---i~~~P~l~~  102 (358)
                      .++++.+..+. .++++++|.|||+|||+|+.+.|.+.++++.+   +++.+..||.+++++++.+|+   +.++||+++
T Consensus        40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~---~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQ---PNIELAIISKGRAEDDLRQRLALERIAIPLVLV  116 (167)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC---TTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEE
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHC---CCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEE
Confidence            45555555443 25688999999999999999999999999876   459999999999999999997   999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHh
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~  127 (358)
                      |++++....++ |.+. ..+.+.+.
T Consensus       117 ~~~~G~~~~~~-g~~p-~~~~~~i~  139 (167)
T 1z6n_A          117 LDEEFNLLGRF-VERP-QAVLDGGP  139 (167)
T ss_dssp             ECTTCCEEEEE-ESSC-HHHHHHCH
T ss_pred             ECCCCCEEEEE-cCCC-HHHHHhHH
Confidence            99876654455 5444 33444444

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.46  E-value=2.6e-13  Score=108.21  Aligned_cols=93  Identities=23%  Similarity=0.329  Sum_probs=80.5

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc------------------------chhhHhhcC-
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE------------------------HKSLCSKYG-   93 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~------------------------~~~l~~~~~-   93 (358)
                      ++++++|.||++||++|+...|.+.++++++++ ..+.++.|+++.                        ...+++.|+ 
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK-GSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc-CCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            679999999999999999999999999999853 468999999863                        345778899 


Q ss_pred             -ccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270           94 -VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus        94 -i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                       +.++|+++++++++.....+.|..+.+++.++|++....
T Consensus       102 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~  141 (151)
T 3raz_A          102 TVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSK  141 (151)
T ss_dssp             CSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred             ccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence             999999999988777778899999999999999876543

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.46  E-value=2.4e-13  Score=95.15  Aligned_cols=74  Identities=16%  Similarity=0.310  Sum_probs=62.4

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC-CHHH
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR-DLED  240 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~-~~~~  240 (358)
                      ..|.||++||++|+.+.|.++++++.+.  .++.++.+|   +.+++++|||.++||+++  +| +..  +.|.. +.++
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G-~~~--~~G~~~~~~~   71 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELG--IDAEFEKIK---EMDQILEAGLTALPGLAV--DG-ELK--IMGRVASKEE   71 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTT--CCEEEEEEC---SHHHHHHHTCSSSSCEEE--TT-EEE--ECSSCCCHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcC--CceEEEEec---CHHHHHHCCCCcCCEEEE--CC-EEE--EcCCCCCHHH
Confidence            4689999999999999999999999885  478899888   778999999999999998  55 322  23887 8999


Q ss_pred             HHHHH
Q 018270          241 FVSFI  245 (358)
Q Consensus       241 l~~~i  245 (358)
                      |.+++
T Consensus        72 l~~~l   76 (77)
T 1ilo_A           72 IKKIL   76 (77)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            98875

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.46  E-value=5.6e-13  Score=106.25  Aligned_cols=96  Identities=21%  Similarity=0.409  Sum_probs=83.1

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-----------------------HHHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----------------------DLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~v~  214 (358)
                      .+++++|.||++||++|+.+.|.+.++.+.+.. .++.++.|+++...                       .+++.|+|.
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAG-KDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLIN  107 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTT-SSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCC
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhcc-CCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcC
Confidence            578999999999999999999999999999863 46888888887654                       789999999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      ++|+++++..+++....+.|..+.++|.++|++..+.+..
T Consensus       108 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~  147 (152)
T 2lja_A          108 GIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEGH  147 (152)
T ss_dssp             SSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCSS
T ss_pred             CCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccccc
Confidence            9999999986666667778889999999999998876654

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.46  E-value=6.1e-14  Score=113.43  Aligned_cols=107  Identities=17%  Similarity=0.277  Sum_probs=84.7

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe---------------------
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD---------------------  200 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd---------------------  200 (358)
                      .+..++++.+.... ..+++++|.||++||++|+.+.|.+.++++.++.. ++.++.|+                     
T Consensus        22 ~l~~~~g~~~~~~~-~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~   99 (164)
T 2h30_A           22 TMKTADNRPASVYL-KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS-SANLITVASPGFLHEKKDGEFQKWYAGLN   99 (164)
T ss_dssp             TCEETTSSBGGGGC-CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred             ccCCCCCCEeeHHH-hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CcEEEEEEcCCCccccCHHHHHHHHHhCC
Confidence            45666776665433 46789999999999999999999999999987532 34444443                     


Q ss_pred             -------CcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          201 -------ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       201 -------~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                             ++.+..++++|+|.++|+++++..+++....+.|..+.++|.++|++...
T Consensus       100 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             CCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                   33456899999999999999997666677788899999999999987654

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.45  E-value=2.1e-14  Score=116.32  Aligned_cols=98  Identities=19%  Similarity=0.314  Sum_probs=73.2

Q ss_pred             ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH-HHHhcCC--CcccEEEEEeCC
Q 018270          149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-LAEKYGV--SGFPTLKFFPKG  225 (358)
Q Consensus       149 ~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-l~~~~~v--~~~Pti~~~~~g  225 (358)
                      ++|+... ..+++++|.||++||++|+.+.|.|.++++.+..  ++.|+.||++.+.+ ++..|++  .++||+++|..+
T Consensus        37 ~~~~~~~-~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~  113 (164)
T 1sen_A           37 DGKKEAA-ASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPS  113 (164)
T ss_dssp             HHHHHHH-HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTT
T ss_pred             HHHHHHH-hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCC
Confidence            4454444 5789999999999999999999999998776542  34566677766655 7888998  569999999544


Q ss_pred             CcceeeecCC----------CCHHHHHHHHHHhc
Q 018270          226 NKDGEEYGGG----------RDLEDFVSFINEKC  249 (358)
Q Consensus       226 ~~~~~~~~g~----------~~~~~l~~~i~~~~  249 (358)
                      ++...++.|.          .+.++|.++|++.+
T Consensus       114 G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          114 GKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             SCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            4555556663          67888888887654

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.45  E-value=2.5e-13  Score=109.80  Aligned_cols=106  Identities=20%  Similarity=0.391  Sum_probs=87.3

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhc------------
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKY------------   92 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~------------   92 (358)
                      +.+++.+.+....-.+++++|.||++||++|+...|.+.++.+.+++ ..+.++.|+++...+.+++|            
T Consensus        19 l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~   97 (165)
T 3or5_A           19 GVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS-RGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMM   97 (165)
T ss_dssp             EECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TTEEEEEEECSCCHHHHHHHHHHHTCCSCEEE
T ss_pred             eeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceEe
Confidence            34444444443334679999999999999999999999999999974 34999999999877776666            


Q ss_pred             ---------------CccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           93 ---------------GVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        93 ---------------~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                                     ++.++|+++++++++.....+.|..+.+++.++|.+...
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  151 (165)
T 3or5_A           98 ATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALG  151 (165)
T ss_dssp             CCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                           899999999998777666788899999999999988754

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.45  E-value=2.7e-13  Score=108.08  Aligned_cols=93  Identities=24%  Similarity=0.408  Sum_probs=80.7

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------chhhHhhcCccC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------HKSLCSKYGVQG   96 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~~   96 (358)
                      .+++++|.||++||++|+...|.+.++.+.+++ ..+.++.|+++.                      +..+++.|+|.+
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS-QGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC
Confidence            578999999999999999999999999999874 358888888865                      347899999999


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +|+++++++++.....+.|..+.+++.++|......
T Consensus       104 ~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~  139 (151)
T 2f9s_A          104 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPG  139 (151)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             CCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhh
Confidence            999999977776667788999999999999987654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.44  E-value=5.5e-14  Score=111.55  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=65.1

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHH--hcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA--FTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG  234 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~--~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g  234 (358)
                      ..+++|+|.|||+||++|+.+.|.+.+..+.  +. +.+++.+.+|. +..+++.+|++.++||+++|+++|+...+..|
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~-~~~fv~V~vD~-e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G  119 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMA-QNKFIMLNLMH-ETTDKNLSPDGQYVPRIMFVDPSLTVRADIAG  119 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHH-HHTCEEEEESS-CCSCGGGCTTCCCSSEEEEECTTSCBCTTCCC
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHh-hcCeEEEEecC-CchhhHhhcCCCCCCEEEEECCCCCEEEEEeC
Confidence            5689999999999999999999988864322  21 12566666662 34456789999999999999955566666777


Q ss_pred             C-------C---CHHHHHHHHHHhc
Q 018270          235 G-------R---DLEDFVSFINEKC  249 (358)
Q Consensus       235 ~-------~---~~~~l~~~i~~~~  249 (358)
                      .       .   +.+.+++.+++.+
T Consensus       120 ~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          120 RYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             SCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             CcCCcccccchhhHHHHHHHHHHHH
Confidence            6       3   3455555555543

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.44  E-value=4.2e-13  Score=105.87  Aligned_cols=87  Identities=18%  Similarity=0.392  Sum_probs=76.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhcC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKYG  212 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~  212 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+.. .++.++.|+++.                         +..++++|+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPS-DSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCC-SSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC
Confidence            678999999999999999999999999999863 468888888854                         558999999


Q ss_pred             CCcccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          213 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       213 v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      |.++|+++++..+++....+.|..+.++|.++|
T Consensus       112 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          112 IITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             cCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            999999999976667777889999999999887

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.44  E-value=1.4e-13  Score=111.36  Aligned_cols=81  Identities=22%  Similarity=0.442  Sum_probs=67.1

Q ss_pred             eEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhh-hH--HHHHHHhcCCCCeEEEEEeCcccHHHHHhc--------C
Q 018270          144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP-TY--EKVAAAFTLEDDVVVANLDADKYKDLAEKY--------G  212 (358)
Q Consensus       144 ~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~-~~--~~la~~~~~~~~v~~~~vd~~~~~~l~~~~--------~  212 (358)
                      .....+.|+... ..+++|+|.||++||++|+.+.| .|  .++++.+.  .++++++||.++.+++.+.|        |
T Consensus        25 ~~~~~ea~~~A~-~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~--~~fv~ikVD~de~~~l~~~y~~~~q~~~g  101 (173)
T 3ira_A           25 YPWGEEAFEKAR-KENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN--EAFVSIKVDREERPDIDNIYMTVCQIILG  101 (173)
T ss_dssp             BCSSHHHHHHHH-HHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHH--HHCEEEEEETTTCHHHHHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHH-HhCCCEEEecccchhHhhccccccccCCHHHHHHHH--hcCceeeeCCcccCcHHHHHHHHHHHHcC
Confidence            345567777766 67899999999999999999988 44  46777663  46999999999999999988        9


Q ss_pred             CCcccEEEEEeCCCc
Q 018270          213 VSGFPTLKFFPKGNK  227 (358)
Q Consensus       213 v~~~Pti~~~~~g~~  227 (358)
                      +.++||++++.++++
T Consensus       102 v~g~Pt~v~l~~dG~  116 (173)
T 3ira_A          102 RGGWPLNIIMTPGKK  116 (173)
T ss_dssp             CCCSSEEEEECTTSC
T ss_pred             CCCCcceeeECCCCC
Confidence            999999999985554

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.44  E-value=4.7e-13  Score=106.65  Aligned_cols=95  Identities=20%  Similarity=0.335  Sum_probs=80.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------cHHHHHhcCCCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------YKDLAEKYGVSG  215 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~v~~  215 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+.. .++.++.|+++.                      +..+++.|+|.+
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS-QGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC
Confidence            578999999999999999999999999999863 358888888764                      347899999999


Q ss_pred             ccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          216 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      +|+++++..+++....+.|..+.++|.++|.+.+....
T Consensus       104 ~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~  141 (151)
T 2f9s_A          104 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGET  141 (151)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred             CCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence            99999997666777788899999999999998876554

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.44  E-value=3e-13  Score=94.68  Aligned_cols=74  Identities=16%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCC-CHHH
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR-STEA  121 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~-~~~~  121 (358)
                      ..|.||++||++|+.+.|.++++++.++  .++.++.+|   +.+++++|+|.++||+++  +|. . . +.|.. +.++
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~-~-~-~~G~~~~~~~   71 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELG--IDAEFEKIK---EMDQILEAGLTALPGLAV--DGE-L-K-IMGRVASKEE   71 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTT--CCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTE-E-E-ECSSCCCHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcC--CceEEEEec---CHHHHHHCCCCcCCEEEE--CCE-E-E-EcCCCCCHHH
Confidence            3589999999999999999999999886  468899998   788999999999999998  442 2 2 23887 8999


Q ss_pred             HHHHH
Q 018270          122 LAEYV  126 (358)
Q Consensus       122 i~~~i  126 (358)
                      +.+++
T Consensus        72 l~~~l   76 (77)
T 1ilo_A           72 IKKIL   76 (77)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            98876

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.42  E-value=4.4e-13  Score=106.83  Aligned_cols=93  Identities=20%  Similarity=0.413  Sum_probs=81.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-----------------------hhHhhcCcc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----------------------SLCSKYGVQ   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i~   95 (358)
                      .+++++|.||++||++|+...|.+.++.+.+.+ ..+.++.|+++.+.                       ++++.|++.
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAG-KDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLIN  107 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTT-SSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCC
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhcc-CCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcC
Confidence            578999999999999999999999999999874 35889999988764                       788999999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      ++|+++++++++.....+.|..+.+++.++|+.....
T Consensus       108 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~  144 (152)
T 2lja_A          108 GIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGL  144 (152)
T ss_dssp             SSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcc
Confidence            9999999987776667788989999999999886543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.41  E-value=1.1e-12  Score=105.47  Aligned_cols=93  Identities=20%  Similarity=0.273  Sum_probs=79.4

Q ss_pred             CCCcEEEEEcCCCCcccch-hhhhHHHHHHHhcCCCCeEEEEEeC----------------------------cccHH--
Q 018270          158 KSKDVLVEFYAPWCGHCKN-LAPTYEKVAAAFTLEDDVVVANLDA----------------------------DKYKD--  206 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~-~~~~~~~la~~~~~~~~v~~~~vd~----------------------------~~~~~--  206 (358)
                      .+++++|.||++||++|+. +.|.+.++++.+.. .++.++.|++                            +....  
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  107 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDE-SQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQ  107 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT-TTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCc-CCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccc
Confidence            5789999999999999999 59999999999964 3588888875                            22223  


Q ss_pred             ----HHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          207 ----LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       207 ----l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                          +++.|+|.++|+++++..+++....+.|..+.+.+.++|++.+..
T Consensus       108 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          108 RIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             SSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             hhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence                899999999999999987777778889999999999999987754

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.41  E-value=1.3e-12  Score=104.92  Aligned_cols=93  Identities=24%  Similarity=0.264  Sum_probs=79.4

Q ss_pred             CCCcEEEEEcCCCCcccchh-hhhHHHHHHHhcCCCCeEEEEEeCc----------------------------ccH---
Q 018270          158 KSKDVLVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDVVVANLDAD----------------------------KYK---  205 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~-~~~~~~la~~~~~~~~v~~~~vd~~----------------------------~~~---  205 (358)
                      .+++++|.||++||++|+.. .|.+.++++.+.. .++.++.|+++                            ...   
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  105 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPE-DKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGA  105 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT-TTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCc-CCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchh
Confidence            57899999999999999996 9999999999963 36888888752                            111   


Q ss_pred             --HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          206 --DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       206 --~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                        .+++.|+|.++|+++++..+++....+.|..+.+++.++|++.+..
T Consensus       106 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          106 MPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence              5899999999999999987777778889999999999999988764

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.41  E-value=7.2e-13  Score=103.30  Aligned_cols=89  Identities=21%  Similarity=0.426  Sum_probs=76.7

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC----------------------------ccchhhHh
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC----------------------------DEHKSLCS   90 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~----------------------------~~~~~l~~   90 (358)
                      ++++++|.||++||++|+...|.+.++.+.++  ..+.++.+++                            +.+..+++
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   98 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAG--DDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLE   98 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT--TTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC--CCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHH
Confidence            57899999999999999999999999999865  5688888843                            33557899


Q ss_pred             hcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           91 KYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        91 ~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .|++.++|+++++++++.....+.|..+.+++.++|.+.
T Consensus        99 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           99 TYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             HcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            999999999999987777767889999999999998753

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.40  E-value=9.2e-13  Score=104.33  Aligned_cols=90  Identities=18%  Similarity=0.303  Sum_probs=76.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH-------------------------HHHhcC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-------------------------LAEKYG  212 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------------------------l~~~~~  212 (358)
                      .+++++|.||++||++|+.+.|.+.++.+.+... ++.++.|+++...+                         +++.|+
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG-TEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            6789999999999999999999999999999743 59999999886665                         999999


Q ss_pred             CCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          213 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       213 v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      |.++|+++++..++.....+.|..+.+++.+.+.+.
T Consensus       109 i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A          109 IYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             CCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHH
Confidence            999999999977767777778877777777776554

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.40  E-value=1.1e-12  Score=104.76  Aligned_cols=92  Identities=24%  Similarity=0.353  Sum_probs=78.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-----------------------CccchhhHhhcCcc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-----------------------CDEHKSLCSKYGVQ   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i~   95 (358)
                      .+++++|.||++||++|+...|.+.++++.+++. .+.++.|+                       .+.+..+++.|+|.
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  105 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK-NFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQ  105 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT-TEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCC
Confidence            6789999999999999999999999999998752 46776655                       34567799999999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      ++|+++++++++.....+.|..+.+.+.++|.....
T Consensus       106 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A          106 VYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR  141 (153)
T ss_dssp             SSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred             ccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            999999998777666788999999999999987644

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.40  E-value=1.8e-12  Score=102.62  Aligned_cols=90  Identities=14%  Similarity=0.287  Sum_probs=73.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhcC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKYG  212 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~  212 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+..+.++.++.|+++.                         +..+++.|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            5789999999999999999999999999999334468888888775                         447999999


Q ss_pred             CCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          213 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       213 v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +.++|+++++..+++....+.   +.+++.++|.+.+.
T Consensus       112 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILTLPTNILLSPTGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             CCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             CCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence            999999999976655444433   88899999887653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.39  E-value=3.3e-12  Score=110.14  Aligned_cols=147  Identities=16%  Similarity=0.287  Sum_probs=91.6

Q ss_pred             CCCcEEEEEE-CCCChhhh-hhhHHHHHHHHHhhcCCce-EEEEEeCccc---hh-------------------hHhhcC
Q 018270           39 QDRGALVEFY-APWCGHCK-KLAPEYEKLGASFKKAKSV-LIGKVDCDEH---KS-------------------LCSKYG   93 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~-~~~~~~~~~~~~~~~~~~v-~~~~vd~~~~---~~-------------------l~~~~~   93 (358)
                      .+++++|.|| ++||++|. ...|.|.++.+++++. .+ .++.|+.+..   ..                   +++.||
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  110 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-GVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMG  110 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhC
Confidence            4678999999 99999999 9999999999998753 46 6776766532   22                   344444


Q ss_pred             cc-----------CCCeEEEccCCCCCcccccCC---------CCHHHHHHHHhccCCCCccccCCCCCceEcCcccHHH
Q 018270           94 VQ-----------GYPTIQWFPKGSLEPKKYEGP---------RSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDE  153 (358)
Q Consensus        94 i~-----------~~P~l~~~~~~~~~~~~~~g~---------~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~  153 (358)
                      +.           ..|+.+++ +++.....+.|.         .+.+++.+.+....                       
T Consensus       111 v~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~~~-----------------------  166 (241)
T 1nm3_A          111 MLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAPQH-----------------------  166 (241)
T ss_dssp             CEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCTTS-----------------------
T ss_pred             ceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCccceecCHHHHHHHhhhhc-----------------------
Confidence            43           22444444 333222222221         23344444333210                       


Q ss_pred             HHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-HHHHHhcCCCcccEEE
Q 018270          154 IVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-KDLAEKYGVSGFPTLK  220 (358)
Q Consensus       154 ~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pti~  220 (358)
                          -....++.|+.+||+.|+.....+++..-      .+....++.+.. .++.+.+|..++|+++
T Consensus       167 ----i~~~~i~ly~~~~Cp~C~~a~~~L~~~~i------~~~~~~i~~~~~~~~l~~~~g~~~vP~~~  224 (241)
T 1nm3_A          167 ----QVQESISIFTKPGCPFCAKAKQLLHDKGL------SFEEIILGHDATIVSVRAVSGRTTVPQVF  224 (241)
T ss_dssp             ----CCCCCEEEEECSSCHHHHHHHHHHHHHTC------CCEEEETTTTCCHHHHHHHTCCSSSCEEE
T ss_pred             ----cccceEEEEECCCChHHHHHHHHHHHcCC------ceEEEECCCchHHHHHHHHhCCCCcCEEE
Confidence                12334788899999999999888886532      233444433322 5688889999999875

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.39  E-value=1e-12  Score=104.95  Aligned_cols=90  Identities=21%  Similarity=0.339  Sum_probs=78.1

Q ss_pred             CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC---------------------------cccHHHHHhcC
Q 018270          160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------------DKYKDLAEKYG  212 (358)
Q Consensus       160 ~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~~~  212 (358)
                      ++++|.||++||++|+...|.+.++++.+    ++.++.|++                           +....+++.|+
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET----GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            89999999999999999999999999998    466666666                           35678999999


Q ss_pred             CCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          213 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       213 v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      +.++|+++++..+++....+.|..+.++|.++|++..+...
T Consensus       107 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~  147 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLE  147 (154)
T ss_dssp             BCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC-
T ss_pred             CCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCccc
Confidence            99999999997777777888999999999999998876543

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.39  E-value=2.2e-12  Score=102.83  Aligned_cols=96  Identities=22%  Similarity=0.341  Sum_probs=80.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe-----------------------CcccHHHHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-----------------------ADKYKDLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~v~  214 (358)
                      .+++++|.||++||++|+...|.+.++++.+.. .++.++.|+                       .+.+..+++.|+|.
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  105 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN-KNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQ  105 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGG-TTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc-CCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCC
Confidence            678999999999999999999999999999974 357666655                       23456799999999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      ++|+++++..+++....+.|..+.+.+.++|.+.+.....
T Consensus       106 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~  145 (153)
T 2l5o_A          106 VYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDA  145 (153)
T ss_dssp             SSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSS
T ss_pred             ccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhh
Confidence            9999999976667777889999999999999988765443

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.38  E-value=5.6e-13  Score=98.60  Aligned_cols=77  Identities=13%  Similarity=0.141  Sum_probs=67.9

Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHH
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED  240 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~  240 (358)
                      ..++.||++||++|+.+.|.++++++.+    .+.+..+|++++++++.+|++. +|++++|.+|..  . +.|..+.+.
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~----~i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~--v-~~g~~~~~~  101 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKS----WFELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKE--L-CHYFLDSDV  101 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHS----CCCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEE--E-ECSSCCCHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhc----CCeEEEEECCCCHHHHHHhCCC-CceEEEEECCEE--E-EecCCCHHH
Confidence            5799999999999999999999999987    3788999999999999999997 999999987732  2 468899999


Q ss_pred             HHHHH
Q 018270          241 FVSFI  245 (358)
Q Consensus       241 l~~~i  245 (358)
                      |.+||
T Consensus       102 L~~~L  106 (107)
T 2fgx_A          102 IGAYL  106 (107)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99887

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.38  E-value=5.5e-13  Score=105.61  Aligned_cols=90  Identities=13%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh-------------------------hHhhc
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS-------------------------LCSKY   92 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-------------------------l~~~~   92 (358)
                      -.+++++|.||++||++|+...|.+.++.+.+++. .+.++.|+++.+.+                         +++.|
T Consensus        29 ~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  107 (148)
T 3hcz_A           29 VQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITY  107 (148)
T ss_dssp             CCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG-TEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHH
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhc
Confidence            36789999999999999999999999999999743 59999999987766                         99999


Q ss_pred             CccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           93 GVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        93 ~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      ++.++|+++++++++.....+.|..+.+++.+.+.+
T Consensus       108 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~  143 (148)
T 3hcz_A          108 DIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEK  143 (148)
T ss_dssp             CCCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHH
T ss_pred             CcCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHH
Confidence            999999999998777666777787777777666654

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.38  E-value=4.8e-13  Score=95.60  Aligned_cols=74  Identities=18%  Similarity=0.262  Sum_probs=62.5

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV  242 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~  242 (358)
                      ++.||++||++|+.+.|.+++++..+       +.++|++++++++++||++ +|++++ .+|. ..   .|..+.+.|.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~-~v---~g~~~~~~L~   69 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDAALESAYGLR-VPVLRD-PMGR-EL---DWPFDAPRLR   69 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCHHHHHHHTTT-CSEEEC-TTCC-EE---ESCCCHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCHHHHHHhCCC-cCeEEE-ECCE-EE---eCCCCHHHHH
Confidence            78999999999999999999886543       5789999999999999998 999988 6553 22   2889999999


Q ss_pred             HHHHHhc
Q 018270          243 SFINEKC  249 (358)
Q Consensus       243 ~~i~~~~  249 (358)
                      ++|++..
T Consensus        70 ~~l~~~~   76 (87)
T 1ttz_A           70 AWLDAAP   76 (87)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHH
Confidence            9997643

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.38  E-value=1.6e-12  Score=104.55  Aligned_cols=92  Identities=16%  Similarity=0.224  Sum_probs=78.4

Q ss_pred             CCCcEEEEEECCCChhhhh-hhHHHHHHHHHhhcCCceEEEEEeC----------------------------ccchh--
Q 018270           39 QDRGALVEFYAPWCGHCKK-LAPEYEKLGASFKKAKSVLIGKVDC----------------------------DEHKS--   87 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~-~~~~~~~~~~~~~~~~~v~~~~vd~----------------------------~~~~~--   87 (358)
                      .+++++|.||++||++|+. +.|.+.++.+.+++. .+.++.|++                            +....  
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  107 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES-QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQ  107 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC-CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccc
Confidence            5799999999999999999 599999999999743 488888875                            22334  


Q ss_pred             ----hHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           88 ----LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        88 ----l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                          +++.|+|.++|+++++++++.....+.|..+.+.+.++|+....
T Consensus       108 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A          108 RIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             SSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             hhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence                88999999999999998877776788899999999999987654

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.37  E-value=4.3e-12  Score=101.18  Aligned_cols=92  Identities=24%  Similarity=0.395  Sum_probs=75.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhcC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKYG  212 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~  212 (358)
                      .+++++|.||++||++|+...|.+.++++.+.. .++.++.|+++.                         +..+++.|+
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKD-KGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTT-TTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhcc-CCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            578999999999999999999999999999963 358888888876                         578999999


Q ss_pred             CCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          213 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       213 v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      |.++|+++++..+++....+   .+.+++.++|++..+...
T Consensus       107 v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~~~~  144 (152)
T 2lrn_A          107 IVGFPHIILVDPEGKIVAKE---LRGDDLYNTVEKFVNGAK  144 (152)
T ss_dssp             CCSSCEEEEECTTSEEEEEC---CCTTHHHHHHHHHHTSSS
T ss_pred             CCcCCeEEEECCCCeEEEee---CCHHHHHHHHHHHHhhcc
Confidence            99999999997665544444   345788888887766543

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.37  E-value=1.5e-12  Score=103.99  Aligned_cols=90  Identities=20%  Similarity=0.341  Sum_probs=78.9

Q ss_pred             CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC---------------------------ccchhhHhhcC
Q 018270           41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC---------------------------DEHKSLCSKYG   93 (358)
Q Consensus        41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~~~   93 (358)
                      ++++|.||++||++|+...|.+.++.+.+    .+.++.|++                           +....+++.|+
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET----GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            89999999999999999999999999998    477778887                           36678899999


Q ss_pred             ccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCCCCc
Q 018270           94 VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNV  134 (358)
Q Consensus        94 i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~~~  134 (358)
                      +.++|+++++++++.....+.|..+.+++.++|++..+...
T Consensus       107 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~  147 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLE  147 (154)
T ss_dssp             BCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC-
T ss_pred             CCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCccc
Confidence            99999999998777666788999999999999998866543

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.37  E-value=1.7e-12  Score=104.18  Aligned_cols=92  Identities=17%  Similarity=0.220  Sum_probs=78.2

Q ss_pred             CCCcEEEEEECCCChhhhhh-hHHHHHHHHHhhcCCceEEEEEeCc----------------------------cch---
Q 018270           39 QDRGALVEFYAPWCGHCKKL-APEYEKLGASFKKAKSVLIGKVDCD----------------------------EHK---   86 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~-~~~~~~~~~~~~~~~~v~~~~vd~~----------------------------~~~---   86 (358)
                      .+++++|.||++||++|+.. .|.+.++.+++++ ..+.++.|+++                            ...   
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  105 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPE-DKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGA  105 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT-TTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCc-CCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchh
Confidence            57899999999999999996 9999999999974 35888888853                            122   


Q ss_pred             --hhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           87 --SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        87 --~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                        .+++.|++.++|+++++++++.....+.|..+.+++.++|++...
T Consensus       106 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  152 (158)
T 3eyt_A          106 MPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG  152 (158)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhc
Confidence              588999999999999998877776788899999999999987654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.37  E-value=3.5e-12  Score=101.54  Aligned_cols=96  Identities=24%  Similarity=0.410  Sum_probs=78.0

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----------------------HHHHhcCCCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----------------------DLAEKYGVSG  215 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----------------------~l~~~~~v~~  215 (358)
                      .+++++|.||++||++|+...|.+.++++.+... ++.++.|+++...                      .+++.|++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  105 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG  105 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCC
Confidence            5789999999999999999999999999999743 4888888877544                      6888999999


Q ss_pred             ccEEEEEeCCCcceeeecCC--CCHHHHHHHHHHhcCCCCC
Q 018270          216 FPTLKFFPKGNKDGEEYGGG--RDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~--~~~~~l~~~i~~~~~~~~~  254 (358)
                      +|+++++..+++....+.|.  .+.+.+.++|++..+....
T Consensus       106 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~  146 (152)
T 3gl3_A          106 MPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEG  146 (152)
T ss_dssp             SSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC----
T ss_pred             CCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccc
Confidence            99999997776767777775  4568999999988765543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.36  E-value=3.1e-12  Score=101.87  Aligned_cols=94  Identities=24%  Similarity=0.418  Sum_probs=78.6

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch----------------------hhHhhcCcc
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----------------------SLCSKYGVQ   95 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----------------------~l~~~~~i~   95 (358)
                      ..+++++|.||++||++|+...|.+.++.+.+.+. .+.++.|+++.+.                      ++++.|++.
T Consensus        26 ~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  104 (152)
T 3gl3_A           26 KTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVK  104 (152)
T ss_dssp             GTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCC
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCC
Confidence            35789999999999999999999999999999753 4888888888654                      678899999


Q ss_pred             CCCeEEEccCCCCCcccccCCC--CHHHHHHHHhccCCC
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPR--STEALAEYVNNEGGT  132 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~--~~~~i~~~i~~~~~~  132 (358)
                      ++|+++++++++.....+.|..  +.+++.++|.+..+.
T Consensus       105 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~  143 (152)
T 3gl3_A          105 GMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGG  143 (152)
T ss_dssp             SSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC-
T ss_pred             CCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHcc
Confidence            9999999987776666777754  458999999987654

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.36  E-value=1.5e-12  Score=105.69  Aligned_cols=97  Identities=20%  Similarity=0.290  Sum_probs=74.7

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe-----------------------Ccc
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-----------------------ADK  203 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd-----------------------~~~  203 (358)
                      ++..+.......+++++|.||++||++|+.+.|.+.++++.     ++.++.|+                       .+.
T Consensus        39 ~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (168)
T 2b1k_A           39 PGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDG  113 (168)
T ss_dssp             TTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEET
T ss_pred             CCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHHHHHHcCCCCceeeECc
Confidence            44444322224788999999999999999999999999875     35555555                       344


Q ss_pred             cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       204 ~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +..+++.|+|.++|+.+++..+++....+.|..+.+.+.++|++.
T Consensus       114 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~  158 (168)
T 2b1k_A          114 DGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL  158 (168)
T ss_dssp             TCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHH
T ss_pred             chHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            567899999999998777776666677888999999998888754

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.36  E-value=3.6e-12  Score=99.25  Aligned_cols=88  Identities=31%  Similarity=0.517  Sum_probs=75.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC----------------------------cccHHHHH
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA----------------------------DKYKDLAE  209 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~----------------------------~~~~~l~~  209 (358)
                      .+++++|.||++||++|+...|.+.++++.+.  .++.++.+++                            +.+..+++
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   98 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAG--DDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLE   98 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT--TTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC--CCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHH
Confidence            57899999999999999999999999999853  4688887742                            23457899


Q ss_pred             hcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          210 KYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       210 ~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      +|++.++|+++++..+++....+.|..+.+++.++|++
T Consensus        99 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A           99 TYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             HTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             HcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHh
Confidence            99999999999997666777788999999999999875

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.35  E-value=2.2e-12  Score=102.13  Aligned_cols=88  Identities=19%  Similarity=0.299  Sum_probs=73.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHh-hcCCceEEEEEeCcc-------------------------chhhHhhc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASF-KKAKSVLIGKVDCDE-------------------------HKSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~-~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (358)
                      .+++++|.||++||++|+...|.+.++++.+ ++ ..+.++.|+++.                         +..+++.|
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN-KNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQY  110 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTC-TTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-CCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhc
Confidence            5789999999999999999999999999999 53 458888888876                         44789999


Q ss_pred             CccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           93 GVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        93 ~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ++.++|+++++++++.....+.   +.+++.+++.+..
T Consensus       111 ~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll  145 (148)
T 3fkf_A          111 AILTLPTNILLSPTGKILARDI---QGEALTGKLKELL  145 (148)
T ss_dssp             TCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC
T ss_pred             CCCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHH
Confidence            9999999999977765433333   8888888887654

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.34  E-value=5.2e-12  Score=101.43  Aligned_cols=93  Identities=26%  Similarity=0.561  Sum_probs=78.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------cHHHHHhcCCCcccE
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------YKDLAEKYGVSGFPT  218 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------~~~l~~~~~v~~~Pt  218 (358)
                      .+++++|.||++||++|+...|.+.++++.+.. .++.++.|+.+.                   +..+++.|+|.++|+
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  118 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK-GDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPD  118 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSST-TSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHccc-CCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcce
Confidence            578999999999999999999999999999963 479999999876                   578999999999999


Q ss_pred             EEEEeCCCcceeeecCC--CCHHHHHHHHHHhcCC
Q 018270          219 LKFFPKGNKDGEEYGGG--RDLEDFVSFINEKCGT  251 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~--~~~~~l~~~i~~~~~~  251 (358)
                      ++++..+++....+.|.  .+.+++++.+.+..+.
T Consensus       119 ~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~  153 (158)
T 3hdc_A          119 TFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGH  153 (158)
T ss_dssp             EEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC--
T ss_pred             EEEEcCCCCEEEEEeCCCccchHHHHHHHHhhccc
Confidence            99997777777778886  5678888888776544

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.33  E-value=1.3e-12  Score=114.19  Aligned_cols=84  Identities=26%  Similarity=0.442  Sum_probs=65.8

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc------cchhhHhhcCccCCCeEEEc
Q 018270           30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD------EHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~------~~~~l~~~~~i~~~P~l~~~  103 (358)
                      ...+.+.+++.  .+|+|||+||+||+++.|.|+++++++   +     .+||+      +++++|++|+|+++||+++ 
T Consensus       189 ~~~la~~l~~~--~vV~F~A~WC~~Ck~l~p~le~lA~~l---~-----~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i-  257 (291)
T 3kp9_A          189 AVGLAAHLRQI--GGTMYGAYWCPHCQDQKELFGAAFDQV---P-----YVECSPNGPGTPQAQECTEAGITSYPTWII-  257 (291)
T ss_dssp             HHHHHHHHHHT--TCEEEECTTCHHHHHHHHHHGGGGGGS---C-----EEESCSSCSSSCCCHHHHTTTCCSTTEEEE-
T ss_pred             HHHHHHHhCCC--CEEEEECCCCHHHHHHHHHHHHHHHHc---C-----EEEEeecCchhhHHHHHHHcCCcccCeEEE-
Confidence            34455555443  369999999999999999999998665   2     34444      3789999999999999665 


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                       +|    ..|.|.++.+++.+|+...
T Consensus       258 -~G----~~~~G~~~~~~L~~~l~~~  278 (291)
T 3kp9_A          258 -NG----RTYTGVRSLEALAVASGYP  278 (291)
T ss_dssp             -TT----EEEESCCCHHHHHHHTCCC
T ss_pred             -CC----EEecCCCCHHHHHHHHCCC
Confidence             44    2499999999999999754

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.33  E-value=3.8e-12  Score=102.23  Aligned_cols=92  Identities=20%  Similarity=0.440  Sum_probs=77.5

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------------------chhhHhhcCccCCC
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------HKSLCSKYGVQGYP   98 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------~~~l~~~~~i~~~P   98 (358)
                      -++++++|.||++||++|+...|.+.++++.+++ ..+.++.|+++.                   +.++++.|++.++|
T Consensus        39 ~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  117 (158)
T 3hdc_A           39 YRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK-GDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLP  117 (158)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSST-TSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSS
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHHccc-CCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcc
Confidence            3578999999999999999999999999999974 468999999987                   67899999999999


Q ss_pred             eEEEccCCCCCcccccCCC--CHHHHHHHHhccC
Q 018270           99 TIQWFPKGSLEPKKYEGPR--STEALAEYVNNEG  130 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g~~--~~~~i~~~i~~~~  130 (358)
                      +++++++++.....+.|..  +.+++.+.+.+..
T Consensus       118 ~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~  151 (158)
T 3hdc_A          118 DTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLE  151 (158)
T ss_dssp             EEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC
T ss_pred             eEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhc
Confidence            9999988777667777754  5667777776544

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.32  E-value=4.3e-12  Score=101.27  Aligned_cols=93  Identities=26%  Similarity=0.442  Sum_probs=77.1

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-----------------------hhhHhhcCcc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----------------------KSLCSKYGVQ   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i~   95 (358)
                      .+++++|.||++||++|+...|.+.++.+.+.+ ..+.++.|+++.+                       ..+++.|++.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG-KPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTT  105 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCC
Confidence            679999999999999999999999999999974 3588888888865                       3488999999


Q ss_pred             CCCeEEEccCCCCCcccccCCC--CHHHHHHHHhccCCC
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPR--STEALAEYVNNEGGT  132 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~--~~~~i~~~i~~~~~~  132 (358)
                      ++|+++++.+++.....+.|..  +.+++.++|.+..+.
T Consensus       106 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~  144 (154)
T 3kcm_A          106 GVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSK  144 (154)
T ss_dssp             SBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC---
T ss_pred             CCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHH
Confidence            9999988887776666777865  677999999886543

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.32  E-value=3.3e-12  Score=94.47  Aligned_cols=78  Identities=13%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             CcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270           41 RGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE  120 (358)
Q Consensus        41 ~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~  120 (358)
                      .+.++.||++||++|+.+.|.++++++++.    +.+..+|.+++++++.+|++. +|++++|.+|..   ...|..+.+
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~----i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~---v~~g~~~~~  100 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW----FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKE---LCHYFLDSD  100 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC----CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEE---EECSSCCCH
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC----CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEE---EEecCCCHH
Confidence            367999999999999999999999998863    888999999999999999997 999999987642   245888999


Q ss_pred             HHHHHH
Q 018270          121 ALAEYV  126 (358)
Q Consensus       121 ~i~~~i  126 (358)
                      .|.+||
T Consensus       101 ~L~~~L  106 (107)
T 2fgx_A          101 VIGAYL  106 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999887

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.32  E-value=6e-12  Score=99.01  Aligned_cols=88  Identities=18%  Similarity=0.340  Sum_probs=71.7

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHH---HHHHhhcCCceEEEEEeCccchhh------------------------Hhh
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEK---LGASFKKAKSVLIGKVDCDEHKSL------------------------CSK   91 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l------------------------~~~   91 (358)
                      .+++++|.||++||++|+...|.+.+   +.+.+++ ..+.++.|+.+.+.+.                        ++.
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  104 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN-GTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL  104 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH-TSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc-CCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence            57999999999999999999999998   8888875 3588999988865543                        448


Q ss_pred             cCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           92 YGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        92 ~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      |+|.++|+++++++++..  .+ +..+.+++.+++.+..
T Consensus       105 ~~v~~~P~~~lid~~G~i--~~-~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          105 YDIRATPTIYLLDGRKRV--IL-KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             SCCCSSSEEEEECTTCBE--EE-CSCCHHHHHHHHHC--
T ss_pred             cCCCCCCeEEEECCCCCE--Ee-cCCCHHHHHHHHHHHc
Confidence            999999999999877644  33 5688999999998754

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.32  E-value=4.1e-12  Score=99.98  Aligned_cols=88  Identities=14%  Similarity=0.382  Sum_probs=70.1

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHH---HHHHhcCCCCeEEEEEeCcccHHH------------------------HHh
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEK---VAAAFTLEDDVVVANLDADKYKDL------------------------AEK  210 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~---la~~~~~~~~v~~~~vd~~~~~~l------------------------~~~  210 (358)
                      .+++++|.||++||++|+...|.+.+   +.+.++. .++.++.|+.+...+.                        ++.
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  104 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN-GTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL  104 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH-TSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc-CCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence            57899999999999999999999988   8888863 4688888888755433                        338


Q ss_pred             cCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          211 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       211 ~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      |+|.++|+++++..+++.  .+ +..+.+++.++|++..
T Consensus       105 ~~v~~~P~~~lid~~G~i--~~-~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          105 YDIRATPTIYLLDGRKRV--IL-KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             SCCCSSSEEEEECTTCBE--EE-CSCCHHHHHHHHHC--
T ss_pred             cCCCCCCeEEEECCCCCE--Ee-cCCCHHHHHHHHHHHc
Confidence            999999999999766542  22 5688999999998654

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.31  E-value=6.4e-12  Score=98.96  Aligned_cols=85  Identities=15%  Similarity=0.244  Sum_probs=69.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHH---HHHHhcCCCCeEEEEEeCcccHH------------------------HHHh
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEK---VAAAFTLEDDVVVANLDADKYKD------------------------LAEK  210 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~---la~~~~~~~~v~~~~vd~~~~~~------------------------l~~~  210 (358)
                      .+++++|.||++||++|+...|.+.+   +.+.++. .++.++.|+.+...+                        +++.
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA-KKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL  108 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT-TSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc-CCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence            56899999999999999999999999   9999964 578888888876532                        4778


Q ss_pred             cCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          211 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       211 ~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                      |+|.++|+++++..+++......   +.+++.+||+
T Consensus       109 ~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~  141 (142)
T 3eur_A          109 YDLRAIPTLYLLDKNKTVLLKDA---TLQKVEQYLA  141 (142)
T ss_dssp             SCCTTCSEEEEECTTCBEEEEEE---CHHHHHHHHH
T ss_pred             cCCCcCCeEEEECCCCcEEecCC---CHHHHHHHHh
Confidence            99999999999987766444433   4788888875

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.31  E-value=4.7e-12  Score=102.40  Aligned_cols=101  Identities=18%  Similarity=0.276  Sum_probs=80.5

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc------------------cc-
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD------------------EH-   85 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~------------------~~-   85 (358)
                      +..++.+.+.-.--.+++++|.||++||++|+...|.+.++.+.++   ++.++.|+++                  .. 
T Consensus        22 l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~   98 (165)
T 3ha9_A           22 LTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGLNKPGYPPPDTP   98 (165)
T ss_dssp             EEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTCCSTTSCCCCCH
T ss_pred             eecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEecccccccccccccccCCCCCCH
Confidence            4444444443222367999999999999999999999999999985   6889999887                  33 


Q ss_pred             ---------------------hhhHhhcCccCCCeEEEccCCCCCcccccCCC-CHHHHHHHHhccC
Q 018270           86 ---------------------KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR-STEALAEYVNNEG  130 (358)
Q Consensus        86 ---------------------~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~-~~~~i~~~i~~~~  130 (358)
                                           .++++.|+|.++|+++++++++....  .|.. +.+++.++|++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A           99 EMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             HHHHHHHHHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHh
Confidence                                 37889999999999999987775533  7888 8999999998754

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.31  E-value=6.7e-12  Score=98.83  Aligned_cols=85  Identities=15%  Similarity=0.215  Sum_probs=69.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHH---HHHHhhcCCceEEEEEeCccchh------------------------hHhh
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEK---LGASFKKAKSVLIGKVDCDEHKS------------------------LCSK   91 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~------------------------l~~~   91 (358)
                      .+++++|.||++||++|+...|.+.+   +.+.+++ ..+.++.|+.+...+                        +++.
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA-KKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL  108 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT-TSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc-CCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence            46899999999999999999999999   9999875 568888898876633                        4788


Q ss_pred             cCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHh
Q 018270           92 YGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus        92 ~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~  127 (358)
                      |+|.++|+++++++++....+.   .+.+++.++|+
T Consensus       109 ~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~  141 (142)
T 3eur_A          109 YDLRAIPTLYLLDKNKTVLLKD---ATLQKVEQYLA  141 (142)
T ss_dssp             SCCTTCSEEEEECTTCBEEEEE---ECHHHHHHHHH
T ss_pred             cCCCcCCeEEEECCCCcEEecC---CCHHHHHHHHh
Confidence            9999999999998877553333   34788888875

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.31  E-value=7.8e-12  Score=99.74  Aligned_cols=95  Identities=23%  Similarity=0.456  Sum_probs=76.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----------------------HHHHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v~  214 (358)
                      .+++++|.||++||++|+...|.+.++++.+.. .++.++.|+.+..                       ..+++.|++.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG-KPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTT  105 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCC
Confidence            678999999999999999999999999999963 3688888887754                       3488999999


Q ss_pred             cccEEEEEeCCCcceeeecCCC--CHHHHHHHHHHhcCCCC
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGR--DLEDFVSFINEKCGTSR  253 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~--~~~~l~~~i~~~~~~~~  253 (358)
                      ++|+++++..+++....+.|..  +.+++.++|++..+..+
T Consensus       106 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~  146 (154)
T 3kcm_A          106 GVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAR  146 (154)
T ss_dssp             SBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-----
T ss_pred             CCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhh
Confidence            9999888877767777777875  77899999987655443

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.31  E-value=3.4e-12  Score=103.55  Aligned_cols=96  Identities=17%  Similarity=0.312  Sum_probs=75.6

Q ss_pred             ChhhHHHH-hcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-----------------------Ccc
Q 018270           29 TEDNFEKE-VGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-----------------------CDE   84 (358)
Q Consensus        29 ~~~~f~~~-~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~   84 (358)
                      +.+.+... +..+++++|.||++||++|+.+.|.+.++.+.     .+.++.|+                       ++.
T Consensus        39 ~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (168)
T 2b1k_A           39 PGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDG  113 (168)
T ss_dssp             TTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEET
T ss_pred             CCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHHHHHHcCCCCceeeECc
Confidence            44444332 24789999999999999999999999998875     35666666                       345


Q ss_pred             chhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           85 HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        85 ~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +..+++.|+|.++|+++++.+++.....+.|..+.+.+.++|.+.
T Consensus       114 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~  158 (168)
T 2b1k_A          114 DGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL  158 (168)
T ss_dssp             TCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHH
T ss_pred             chHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            667899999999998888877666667788999999998888764

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.31  E-value=8.6e-12  Score=100.84  Aligned_cols=87  Identities=21%  Similarity=0.366  Sum_probs=73.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc------------------cc---------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD------------------KY---------------  204 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~------------------~~---------------  204 (358)
                      .+++++|.||++||++|+.+.|.+.++.+.+.   ++.++.|+++                  ..               
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPS  112 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTT
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCC
Confidence            67899999999999999999999999999985   7888888876                  33               


Q ss_pred             -------HHHHHhcCCCcccEEEEEeCCCcceeeecCCC-CHHHHHHHHHHhc
Q 018270          205 -------KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR-DLEDFVSFINEKC  249 (358)
Q Consensus       205 -------~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~-~~~~l~~~i~~~~  249 (358)
                             ..+++.|+|.++|+++++..+++...  .|.. +.+.|.++|++..
T Consensus       113 ~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          113 WIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             SEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred             eeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHh
Confidence                   27899999999999999976655333  7778 9999999998754

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.30  E-value=7.2e-12  Score=103.20  Aligned_cols=90  Identities=8%  Similarity=0.251  Sum_probs=76.2

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCce------EEEEEeCcc-chhhHhhc-------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSV------LIGKVDCDE-HKSLCSKY-------------------   92 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v------~~~~vd~~~-~~~l~~~~-------------------   92 (358)
                      .+++++|.||++||++|+...|.+.++.+.+++. .+      .++.|+++. +++.+++|                   
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  136 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA-GNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTA  136 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC-C---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc-CCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHH
Confidence            5789999999999999999999999999999753 25      999999988 56655555                   


Q ss_pred             ------CccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           93 ------GVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        93 ------~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                            ++.++|+++++.+++.....+.|..+.+++.++|.+.
T Consensus       137 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  179 (183)
T 3lwa_A          137 ASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPL  179 (183)
T ss_dssp             GGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence                  6899999888888777767888999999999998765

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.30  E-value=2.8e-12  Score=102.52  Aligned_cols=95  Identities=21%  Similarity=0.371  Sum_probs=75.4

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC-----------------------ccchh
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC-----------------------DEHKS   87 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~-----------------------~~~~~   87 (358)
                      +.+....-.+++++|.||++||++|+.+.|.+.++.+.    +++.++.|++                       +.+..
T Consensus        33 ~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  108 (156)
T 1kng_A           33 PGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD----KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGR  108 (156)
T ss_dssp             CCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC----TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSH
T ss_pred             ceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc----CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhH
Confidence            33433334578999999999999999999999988765    4477777765                       33457


Q ss_pred             hHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           88 LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        88 l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +++.|++.++|+++++.+++.....+.|..+.+.+.+++.+.
T Consensus       109 ~~~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~  150 (156)
T 1kng_A          109 ASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQ  150 (156)
T ss_dssp             HHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred             HHHhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence            889999999998888877666657788999999999888764

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.30  E-value=6.2e-12  Score=99.24  Aligned_cols=85  Identities=15%  Similarity=0.244  Sum_probs=67.1

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-------------------
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------------------   85 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------   85 (358)
                      +..++.+.+...--.+++++|.||++||++|+...|.+.++++.+++...+.++.|+++..                   
T Consensus        13 l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~   92 (144)
T 1i5g_A           13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFE   92 (144)
T ss_dssp             EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred             EEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccC
Confidence            3444444443323357899999999999999999999999999997534688888888752                   


Q ss_pred             -----hhhHhhcCccCCCeEEEcc-CCCCC
Q 018270           86 -----KSLCSKYGVQGYPTIQWFP-KGSLE  109 (358)
Q Consensus        86 -----~~l~~~~~i~~~P~l~~~~-~~~~~  109 (358)
                           ..+++.|+|.++|++++++ +++..
T Consensus        93 ~~d~~~~~~~~~~v~~~P~~~lid~~~G~i  122 (144)
T 1i5g_A           93 DRKGMEFLTTGFDVKSIPTLVGVEADSGNI  122 (144)
T ss_dssp             CHHHHHHHHHHTTCCSSSEEEEEETTTCCE
T ss_pred             chHHHHHHHHHcCCCCCCEEEEEECCCCcE
Confidence                 5789999999999999998 56544

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.30  E-value=1.2e-11  Score=98.64  Aligned_cols=89  Identities=11%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh-----------------------hHhhcCcc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS-----------------------LCSKYGVQ   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-----------------------l~~~~~i~   95 (358)
                      .+++++|.||++||++|+...|.+.++.+++++. .+.++.|+++...+                       +++.|++.
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ-GFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcc
Confidence            4689999999999999999999999999999753 58899999886653                       88899999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      ++|++++++++|.....+.|..+.++...-+.+
T Consensus       113 ~~P~~~lid~~G~i~~~~~g~~~~e~~~~~~~~  145 (152)
T 2lrt_A          113 NLPSVFLVNRNNELSARGENIKDLDEAIKKLLE  145 (152)
T ss_dssp             SCSEEEEEETTTEEEEETTTCSCHHHHHHHHHG
T ss_pred             cCceEEEECCCCeEEEecCCHHHHHHHHHHHHh
Confidence            999999998777776788898887776665544

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.30  E-value=1.1e-11  Score=98.68  Aligned_cols=88  Identities=25%  Similarity=0.313  Sum_probs=71.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------------------------chhhHhhcC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------------HKSLCSKYG   93 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~   93 (358)
                      .+++++|.||++||++|+...|.+.++.+.+++ ..+.++.|+++.                         +..+++.|+
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKD-KGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTT-TTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhcc-CCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            578999999999999999999999999999974 358899999886                         578899999


Q ss_pred             ccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           94 VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        94 i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      |.++|+++++++++.....+.   +.+++.++|++..
T Consensus       107 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l~  140 (152)
T 2lrn_A          107 IVGFPHIILVDPEGKIVAKEL---RGDDLYNTVEKFV  140 (152)
T ss_dssp             CCSSCEEEEECTTSEEEEECC---CTTHHHHHHHHHH
T ss_pred             CCcCCeEEEECCCCeEEEeeC---CHHHHHHHHHHHH
Confidence            999999999977765544442   3456777666544

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.30  E-value=1.2e-11  Score=101.86  Aligned_cols=91  Identities=13%  Similarity=0.307  Sum_probs=76.1

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCe------EEEEEeCcc-cHHHHHhc-------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV------VVANLDADK-YKDLAEKY-------------------  211 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v------~~~~vd~~~-~~~l~~~~-------------------  211 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+... .+      .++.|+++. ..+..++|                   
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  136 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA-GNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTA  136 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC-C---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc-CCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHH
Confidence            5789999999999999999999999999998643 35      899999887 56555555                   


Q ss_pred             ------CCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          212 ------GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       212 ------~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                            ++.++|+++++..+++....+.|..+.++|.++|.+.+
T Consensus       137 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          137 ASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             GGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                  68899988888776677778899999999999998764

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.29  E-value=1.4e-11  Score=98.35  Aligned_cols=88  Identities=14%  Similarity=0.193  Sum_probs=74.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH-----------------------HHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-----------------------LAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------l~~~~~v~  214 (358)
                      .+++++|.||++||++|+...|.+.++++.+... ++.++.|+++...+                       +++.|++.
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ-GFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcc
Confidence            4689999999999999999999999999999743 58888888886553                       88999999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                      ++|+++++..+|+....+.|..+.++...-..
T Consensus       113 ~~P~~~lid~~G~i~~~~~g~~~~e~~~~~~~  144 (152)
T 2lrt_A          113 NLPSVFLVNRNNELSARGENIKDLDEAIKKLL  144 (152)
T ss_dssp             SCSEEEEEETTTEEEEETTTCSCHHHHHHHHH
T ss_pred             cCceEEEECCCCeEEEecCCHHHHHHHHHHHH
Confidence            99999999877777778888888776655443

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.29  E-value=6.9e-12  Score=100.25  Aligned_cols=88  Identities=18%  Similarity=0.306  Sum_probs=72.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------------------ccHHHHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------KYKDLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------~~~~l~~~~~v~  214 (358)
                      .+++++|.||++||++|+.+.|.+.++++.    +++.++.|+.+                       ....+++.|++.
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  116 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD----KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY  116 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC----TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc----CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcC
Confidence            478999999999999999999999998765    45777777653                       345788999999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++|+++++..+++....+.|..+.+++.++|.+.+
T Consensus       117 ~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          117 GVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             SSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             ccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            99988888666666777899999999999987654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.29  E-value=8.7e-12  Score=100.97  Aligned_cols=71  Identities=23%  Similarity=0.424  Sum_probs=62.5

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc------------------------hhhHhhcCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH------------------------KSLCSKYGV   94 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~i   94 (358)
                      .+++++|+||++||++|+...|.+.++++++++...+.++.|+++..                        .++++.|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            57899999999999999999999999999998544788888887765                        678999999


Q ss_pred             cCCCeEEEccCC-CCC
Q 018270           95 QGYPTIQWFPKG-SLE  109 (358)
Q Consensus        95 ~~~P~l~~~~~~-~~~  109 (358)
                      .++|++++++++ +..
T Consensus       127 ~~~Pt~~lid~~~G~i  142 (165)
T 3s9f_A          127 ESIPTLIGLNADTGDT  142 (165)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CCCCEEEEEeCCCCEE
Confidence            999999999875 654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.28  E-value=1.2e-11  Score=100.10  Aligned_cols=70  Identities=23%  Similarity=0.408  Sum_probs=61.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc------------------------HHHHHhcCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY------------------------KDLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~v  213 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+....++.++.|+++..                        ..+++.|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            57899999999999999999999999999997545788888877755                        679999999


Q ss_pred             CcccEEEEEeCC-Cc
Q 018270          214 SGFPTLKFFPKG-NK  227 (358)
Q Consensus       214 ~~~Pti~~~~~g-~~  227 (358)
                      .++|+++++..+ ++
T Consensus       127 ~~~Pt~~lid~~~G~  141 (165)
T 3s9f_A          127 ESIPTLIGLNADTGD  141 (165)
T ss_dssp             CSSSEEEEEETTTCC
T ss_pred             CCCCEEEEEeCCCCE
Confidence            999999999864 54

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.28  E-value=1.1e-11  Score=97.99  Aligned_cols=72  Identities=18%  Similarity=0.319  Sum_probs=61.5

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc------------------------hhhHhhcC
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH------------------------KSLCSKYG   93 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~   93 (358)
                      -.+++++|.||++||++|+...|.+.++++.+++...+.++.|+++.+                        ..+++.|+
T Consensus        26 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (146)
T 1o8x_A           26 LAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN  105 (146)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT
T ss_pred             hCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhC
Confidence            357899999999999999999999999999997434688888888753                        47899999


Q ss_pred             ccCCCeEEEcc-CCCCC
Q 018270           94 VQGYPTIQWFP-KGSLE  109 (358)
Q Consensus        94 i~~~P~l~~~~-~~~~~  109 (358)
                      |.++|++++++ .+|..
T Consensus       106 v~~~Pt~~lid~~~G~i  122 (146)
T 1o8x_A          106 VESIPTLIGVDADSGDV  122 (146)
T ss_dssp             CCSSSEEEEEETTTCCE
T ss_pred             CCCCCEEEEEECCCCeE
Confidence            99999999998 55544

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.27  E-value=6.5e-12  Score=89.66  Aligned_cols=74  Identities=22%  Similarity=0.331  Sum_probs=62.1

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA  123 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~  123 (358)
                      ++.||++||++|+.+.|.+++++..+       +..||.+++++++.+||+. +|++++ .+|. . .  .|..+.+.|.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~-~-v--~g~~~~~~L~   69 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDAALESAYGLR-VPVLRD-PMGR-E-L--DWPFDAPRLR   69 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCHHHHHHHTTT-CSEEEC-TTCC-E-E--ESCCCHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCHHHHHHhCCC-cCeEEE-ECCE-E-E--eCCCCHHHHH
Confidence            78999999999999999998776532       5789999999999999998 999998 5553 2 2  2888999999


Q ss_pred             HHHhccC
Q 018270          124 EYVNNEG  130 (358)
Q Consensus       124 ~~i~~~~  130 (358)
                      +++....
T Consensus        70 ~~l~~~~   76 (87)
T 1ttz_A           70 AWLDAAP   76 (87)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHH
Confidence            9998654

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=3.4e-11  Score=95.66  Aligned_cols=89  Identities=17%  Similarity=0.271  Sum_probs=72.4

Q ss_pred             CCCcEEEEEcCCCCcc--cchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-------------------------HHHHh
Q 018270          158 KSKDVLVEFYAPWCGH--CKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------------------------DLAEK  210 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~--c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~  210 (358)
                      .+++++|.||++||++  |+...|.+.++.+.|+.+.++.++.|+.+...                         .+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            5789999999999999  99999999999999933456888888887553                         78999


Q ss_pred             cCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          211 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       211 ~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      |+|.++|+++++..+++....+.   +.+++.+.|.+.+
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll  147 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGKILAKNL---RGEELKKKIENIV  147 (150)
T ss_dssp             TTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHH
T ss_pred             cCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHHH
Confidence            99999999999976665444442   7778887776543

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.26  E-value=1.8e-11  Score=96.61  Aligned_cols=84  Identities=20%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------  203 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------  203 (358)
                      +..++++.+..-- -.+++++|.||++||++|+.+.|.+.++++.+....++.++.|+++.                   
T Consensus        13 l~~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T 1i5g_A           13 VLKGAAADIALPS-LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EEETTEEEEEGGG-GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             EEcCCCCEecHHH-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCcccccc
Confidence            4445554433222 35789999999999999999999999999999744578888887774                   


Q ss_pred             -----cHHHHHhcCCCcccEEEEEe-CCCc
Q 018270          204 -----YKDLAEKYGVSGFPTLKFFP-KGNK  227 (358)
Q Consensus       204 -----~~~l~~~~~v~~~Pti~~~~-~g~~  227 (358)
                           ...++++|+|.++|+++++. .+++
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid~~~G~  121 (144)
T 1i5g_A           92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGN  121 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEETTTCC
T ss_pred             CchHHHHHHHHHcCCCCCCEEEEEECCCCc
Confidence                 25799999999999999997 5544

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.25  E-value=2.8e-11  Score=100.71  Aligned_cols=94  Identities=15%  Similarity=0.225  Sum_probs=76.8

Q ss_pred             CCC-cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------------------------ccHHH
Q 018270          158 KSK-DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------KYKDL  207 (358)
Q Consensus       158 ~~~-~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------------~~~~l  207 (358)
                      .++ +++|.||++||++|+...|.+.++.+.+... ++.++.|+++                             .+..+
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK-GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEV  122 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHH
Confidence            455 5999999999999999999999999999643 5788888773                             34578


Q ss_pred             HHhcCCCcccEEEEEeCCCcceee---------ecCCCCHHHHHHHHHHhcCCC
Q 018270          208 AEKYGVSGFPTLKFFPKGNKDGEE---------YGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       208 ~~~~~v~~~Pti~~~~~g~~~~~~---------~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      ++.|+|.++|+++++..+++....         +.|..+.++|.+.|.+.+...
T Consensus       123 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~  176 (196)
T 2ywi_A          123 AKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR  176 (196)
T ss_dssp             HHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred             HHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence            999999999999999766665555         457789999999999887543

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.25  E-value=2e-11  Score=96.58  Aligned_cols=70  Identities=21%  Similarity=0.358  Sum_probs=59.9

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc------------------------cHHHHHhcCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK------------------------YKDLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~------------------------~~~l~~~~~v  213 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+....++.++.|+++.                        +..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            5789999999999999999999999999999743577788777764                        3579999999


Q ss_pred             CcccEEEEEe-CCCc
Q 018270          214 SGFPTLKFFP-KGNK  227 (358)
Q Consensus       214 ~~~Pti~~~~-~g~~  227 (358)
                      .++|+++++. .+|+
T Consensus       107 ~~~Pt~~lid~~~G~  121 (146)
T 1o8x_A          107 ESIPTLIGVDADSGD  121 (146)
T ss_dssp             CSSSEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCCe
Confidence            9999999998 4544

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.24  E-value=2.3e-11  Score=95.84  Aligned_cols=71  Identities=21%  Similarity=0.399  Sum_probs=61.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc------------------------chhhHhhcCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE------------------------HKSLCSKYGV   94 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~------------------------~~~l~~~~~i   94 (358)
                      .+++++|.||++||++|+...|.+.++++++++...+.++.|+++.                        +.++++.|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            5789999999999999999999999999998744568888888875                        3468899999


Q ss_pred             cCCCeEEEcc-CCCCC
Q 018270           95 QGYPTIQWFP-KGSLE  109 (358)
Q Consensus        95 ~~~P~l~~~~-~~~~~  109 (358)
                      .++|++++++ +++..
T Consensus       107 ~~~Pt~~lid~~~G~i  122 (144)
T 1o73_A          107 ESIPTLITINADTGAI  122 (144)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CCCCEEEEEECCCCeE
Confidence            9999999998 56544

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.24  E-value=3.6e-11  Score=95.38  Aligned_cols=96  Identities=11%  Similarity=0.160  Sum_probs=76.1

Q ss_pred             hhHHHHh----cCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCcc--chhhHhhcCccCCCeEE
Q 018270           31 DNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        31 ~~f~~~~----~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~  101 (358)
                      .+|++.+    +++++++|+||++||..|+.+....   .++++.++  .++.++.+|.+.  +..+.++|++.++|+++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~--~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~  106 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR--EHFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH--HTEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHH--cCeEEEEEecCCHhHHHHHHHcCCCCCCEEE
Confidence            4565554    5689999999999999999998765   66676665  458888898864  45688999999999999


Q ss_pred             EccCC-CCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKG-SLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~-~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++++. +.....+.| .+++++.++|++.
T Consensus       107 fld~~~G~~l~~~~g-~~~~~fl~~L~~~  134 (153)
T 2dlx_A          107 ILDPRTGQKLVEWHQ-LDVSSFLDQVTGF  134 (153)
T ss_dssp             EECTTTCCCCEEESS-CCHHHHHHHHHHH
T ss_pred             EEeCCCCcEeeecCC-CCHHHHHHHHHHH
Confidence            99875 544455655 8999999888764

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.24  E-value=2.4e-11  Score=99.41  Aligned_cols=87  Identities=23%  Similarity=0.357  Sum_probs=72.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC-----------------------cccHHHHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------DKYKDLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~v~  214 (358)
                      .+++++|.||++||++|+...|.+.++++.     ++.++.|++                       +.+..+++.|++.
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  131 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ-----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVY  131 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCC
Confidence            578999999999999999999999999875     366666664                       3345788999999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++|+++++..+++....+.|..+.+++.++|.+.+
T Consensus       132 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          132 GAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             SSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            99999999877777778889999999988887654

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.24  E-value=3.6e-11  Score=95.34  Aligned_cols=105  Identities=13%  Similarity=0.178  Sum_probs=78.3

Q ss_pred             ccHHHHH---hcCCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcc--cHHHHHhcCCCcccEEE
Q 018270          149 DNFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       149 ~~f~~~~---~~~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti~  220 (358)
                      .+|++.+   ...+++++|+||++||.+|+.|....   .++++.+.  .+++++++|.++  ...+.++|++.++|+++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~--~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~  106 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR--EHFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH--HTEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHH--cCeEEEEEecCCHhHHHHHHHcCCCCCCEEE
Confidence            4555554   24589999999999999999995432   33444442  368999999874  45689999999999999


Q ss_pred             EEeCC-CcceeeecCCCCHHHHHHHHHHhcCCCCCCC
Q 018270          221 FFPKG-NKDGEEYGGGRDLEDFVSFINEKCGTSRDGK  256 (358)
Q Consensus       221 ~~~~g-~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~  256 (358)
                      ++... +.....+.| .+++++.++|++.+.......
T Consensus       107 fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~~~~  142 (153)
T 2dlx_A          107 ILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHGQLD  142 (153)
T ss_dssp             EECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTCSCS
T ss_pred             EEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcCCCC
Confidence            99764 544555655 899999999998876554443

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.24  E-value=2.7e-11  Score=95.42  Aligned_cols=70  Identities=23%  Similarity=0.490  Sum_probs=59.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc------------------------cHHHHHhcCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK------------------------YKDLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~------------------------~~~l~~~~~v  213 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+....++.++.|+++.                        +..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            5789999999999999999999999999999744577777777764                        3468999999


Q ss_pred             CcccEEEEEe-CCCc
Q 018270          214 SGFPTLKFFP-KGNK  227 (358)
Q Consensus       214 ~~~Pti~~~~-~g~~  227 (358)
                      .++|+++++. .+++
T Consensus       107 ~~~Pt~~lid~~~G~  121 (144)
T 1o73_A          107 ESIPTLITINADTGA  121 (144)
T ss_dssp             CSSSEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCCe
Confidence            9999999998 4444

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.23  E-value=1.7e-11  Score=100.30  Aligned_cols=88  Identities=24%  Similarity=0.379  Sum_probs=73.4

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC-----------------------ccchhhHhhcCc
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC-----------------------DEHKSLCSKYGV   94 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i   94 (358)
                      -.+++++|.||++||++|+...|.+.++.++     .+.++.|++                       +.+..+++.|++
T Consensus        56 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  130 (176)
T 3kh7_A           56 LKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGV  130 (176)
T ss_dssp             GCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTC
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCC
Confidence            3578999999999999999999999999875     366666664                       345678899999


Q ss_pred             cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      .++|+++++++++.....+.|..+.+.+.++|.+..
T Consensus       131 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          131 YGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             CSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            999999999887777678889999999998887653

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.22  E-value=4.9e-11  Score=98.57  Aligned_cols=93  Identities=14%  Similarity=0.138  Sum_probs=74.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------------------------ccHHHH
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------KYKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------------~~~~l~  208 (358)
                      .+++++|.||++||++|+...|.+.++++.+...  +.++.|+++                             .+..++
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  109 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  109 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT--EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC--eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHH
Confidence            5689999999999999999999999999999643  888888873                             345789


Q ss_pred             HhcCCCcccEEEEEeCCCcceee--------ecCCCCHHHHHHHHHHhcCCC
Q 018270          209 EKYGVSGFPTLKFFPKGNKDGEE--------YGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       209 ~~~~v~~~Pti~~~~~g~~~~~~--------~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +.|++.++|+++++..+++....        +.|..+.++|.+.|++.+...
T Consensus       110 ~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~  161 (188)
T 2cvb_A          110 KAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  161 (188)
T ss_dssp             HHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             HHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence            99999999999999766553333        123347889999999887644

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.21  E-value=6.5e-11  Score=94.05  Aligned_cols=87  Identities=18%  Similarity=0.297  Sum_probs=71.9

Q ss_pred             CCCcEEEEEECCCChh--hhhhhHHHHHHHHHh-hcCCceEEEEEeCccch-------------------------hhHh
Q 018270           39 QDRGALVEFYAPWCGH--CKKLAPEYEKLGASF-KKAKSVLIGKVDCDEHK-------------------------SLCS   90 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~--C~~~~~~~~~~~~~~-~~~~~v~~~~vd~~~~~-------------------------~l~~   90 (358)
                      .+++++|.||++||++  |+...|.+.++.+++ ++ ..+.++.|+.+..+                         ++++
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  110 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN-KYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAK  110 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTC-SSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccC-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHH
Confidence            5789999999999999  999999999999999 53 45888888887654                         7889


Q ss_pred             hcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           91 KYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        91 ~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .|++.++|+++++++++.....+   .+.+++.+.|.+.
T Consensus       111 ~~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l  146 (150)
T 3fw2_A          111 QYSIYKIPANILLSSDGKILAKN---LRGEELKKKIENI  146 (150)
T ss_dssp             HTTCCSSSEEEEECTTSBEEEES---CCHHHHHHHHHHH
T ss_pred             HcCCCccCeEEEECCCCEEEEcc---CCHHHHHHHHHHH
Confidence            99999999999998777553444   2777888777654

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.20  E-value=4.2e-11  Score=108.32  Aligned_cols=92  Identities=15%  Similarity=0.180  Sum_probs=79.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------------------------ccHHHHHh
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------------KYKDLAEK  210 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~  210 (358)
                      .+++++|.||++||++|+.+.|.+.++++.+.. .++.++.|+++                           .+..+++.
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~-~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD-SGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc-CCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            578999999999999999999999999999964 36888888764                           23478999


Q ss_pred             cCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          211 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       211 ~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      |+|.++|+++++..+++....+.|..+.+++.++|++.+.
T Consensus       160 ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~  199 (352)
T 2hyx_A          160 YRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLN  199 (352)
T ss_dssp             TTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHh
Confidence            9999999999997777777788999999999999988763

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.20  E-value=8.9e-11  Score=96.80  Aligned_cols=93  Identities=20%  Similarity=0.444  Sum_probs=76.0

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----HHHHHhcCCC------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVS------------------  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~------------------  214 (358)
                      .+++++|.||++||++|+...|.+.++.+.+.. .++.++.|+++..     ..+++++++.                  
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  137 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSG-PNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKA  137 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB-TTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcc
Confidence            578999999999999999999999999999963 4678888877644     4677777774                  


Q ss_pred             -----cccEEEEEeCCCcceeeecCCCC--HHHHHHHHHHhcCC
Q 018270          215 -----GFPTLKFFPKGNKDGEEYGGGRD--LEDFVSFINEKCGT  251 (358)
Q Consensus       215 -----~~Pti~~~~~g~~~~~~~~g~~~--~~~l~~~i~~~~~~  251 (358)
                           ++|+++++..+++....+.|..+  .+++.++|.+.++.
T Consensus       138 ~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          138 IGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             TTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             ccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence                 89999999777777777888754  78999999887653

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.19  E-value=5.1e-11  Score=99.10  Aligned_cols=92  Identities=14%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             CCC-cEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-----------------------------cchhh
Q 018270           39 QDR-GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-----------------------------EHKSL   88 (358)
Q Consensus        39 ~~~-~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----------------------------~~~~l   88 (358)
                      .++ +++|.||++||++|+...|.+.++.+++.+ ..+.++.|+++                             .+.++
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMP-KGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEV  122 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGG-GTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHh-CCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHH
Confidence            345 599999999999999999999999999974 25888888873                             35678


Q ss_pred             HhhcCccCCCeEEEccCCCCCccc---------ccCCCCHHHHHHHHhccCC
Q 018270           89 CSKYGVQGYPTIQWFPKGSLEPKK---------YEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        89 ~~~~~i~~~P~l~~~~~~~~~~~~---------~~g~~~~~~i~~~i~~~~~  131 (358)
                      ++.|++.++|+++++++++.....         +.|..+.+++.+.|.+...
T Consensus       123 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~  174 (196)
T 2ywi_A          123 AKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLE  174 (196)
T ss_dssp             HHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHc
Confidence            999999999999999877755444         4577788999999887643

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.19  E-value=5.5e-11  Score=98.08  Aligned_cols=92  Identities=21%  Similarity=0.430  Sum_probs=75.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-----hhhHhhcCcc------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----KSLCSKYGVQ------------------   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~------------------   95 (358)
                      .+++++|.||++||++|+...|.+.++.++++. ..+.++.|+++.+     ..+++++++.                  
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  137 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSG-PNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKA  137 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB-TTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcc
Confidence            578999999999999999999999999999874 4688888888754     4566777774                  


Q ss_pred             -----CCCeEEEccCCCCCcccccCCCC--HHHHHHHHhccCC
Q 018270           96 -----GYPTIQWFPKGSLEPKKYEGPRS--TEALAEYVNNEGG  131 (358)
Q Consensus        96 -----~~P~l~~~~~~~~~~~~~~g~~~--~~~i~~~i~~~~~  131 (358)
                           ++|+++++++++.....+.|..+  .+++.++|+....
T Consensus       138 ~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  180 (186)
T 1jfu_A          138 IGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  180 (186)
T ss_dssp             TTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             ccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhc
Confidence                 89999999887766677878764  7889999887654

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.18  E-value=4.1e-12  Score=111.08  Aligned_cols=73  Identities=19%  Similarity=0.367  Sum_probs=59.5

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC----cccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCC
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA----DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD  237 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~----~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~  237 (358)
                      .+|+||||||+||+.+.|.|+++++++.      .+.+|.    +++++++++|+|+++||+++  +|.    .|.|.++
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~----~~~G~~~  267 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR----TYTGVRS  267 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE----EEESCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE----EecCCCC
Confidence            3699999999999999999999987662      334442    23789999999999999554  552    4899999


Q ss_pred             HHHHHHHHH
Q 018270          238 LEDFVSFIN  246 (358)
Q Consensus       238 ~~~l~~~i~  246 (358)
                      .+++.+|+.
T Consensus       268 ~~~L~~~l~  276 (291)
T 3kp9_A          268 LEALAVASG  276 (291)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHC
Confidence            999999975

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.18  E-value=5.6e-11  Score=107.49  Aligned_cols=91  Identities=14%  Similarity=0.189  Sum_probs=78.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------chhhHhh
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSK   91 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~   91 (358)
                      .+++++|.||++||++|+...|.+.++++++++ ..+.++.|+++.                           +..+++.
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~-~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD-SGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc-CCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            478999999999999999999999999999974 358888888742                           3568899


Q ss_pred             cCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           92 YGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        92 ~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      |+|.++|+++++++++.....+.|..+.+++.++|++..
T Consensus       160 ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          160 YRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             TTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            999999999999877777678889999999998887643

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.17  E-value=7.2e-11  Score=92.97  Aligned_cols=85  Identities=11%  Similarity=0.143  Sum_probs=67.1

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc--------------------------HHHHHhc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY--------------------------KDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~--------------------------~~l~~~~  211 (358)
                      .+++++|.||++||++|+...|.+.++.+.|... ++.++.|+.+..                          ..+++.|
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            5689999999999999999999999999999643 688888877632                          2578899


Q ss_pred             CCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          212 GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       212 ~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                      +|.++|+.+++...++...+.   .+.+++.++|+
T Consensus       110 ~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~  141 (143)
T 4fo5_A          110 DLRKGFKNFLINDEGVIIAAN---VTPEKLTEILK  141 (143)
T ss_dssp             TGGGCCCEEEECTTSBEEEES---CCHHHHHHHHT
T ss_pred             CCCCCCcEEEECCCCEEEEcc---CCHHHHHHHHH
Confidence            999999999998665544332   34677776664

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.17  E-value=9.2e-11  Score=92.36  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=68.5

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc--------------------------hhhHhhc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH--------------------------KSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------------------~~l~~~~   92 (358)
                      .+++++|.||++||++|+...|.+.++.+++++. .+.++.|+.+.+                          ..+++.|
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            5789999999999999999999999999998743 588888887743                          2467889


Q ss_pred             CccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           93 GVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        93 ~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      +|.++|+.+++++++....+.   .+.+++.+.+.+
T Consensus       110 ~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~  142 (143)
T 4fo5_A          110 DLRKGFKNFLINDEGVIIAAN---VTPEKLTEILKA  142 (143)
T ss_dssp             TGGGCCCEEEECTTSBEEEES---CCHHHHHHHHTC
T ss_pred             CCCCCCcEEEECCCCEEEEcc---CCHHHHHHHHHh
Confidence            999999999998776543332   356777777653

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.17  E-value=6.9e-11  Score=97.69  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-----------------------------cchhhH
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-----------------------------EHKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----------------------------~~~~l~   89 (358)
                      .+++++|.||++||++|+...|.+.++.+++.+.  +.++.|+++                             .+.+++
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  109 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  109 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT--EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC--eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHH
Confidence            4689999999999999999999999999999743  889999883                             355788


Q ss_pred             hhcCccCCCeEEEccCCCCCccc--------ccCCCCHHHHHHHHhccCC
Q 018270           90 SKYGVQGYPTIQWFPKGSLEPKK--------YEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        90 ~~~~i~~~P~l~~~~~~~~~~~~--------~~g~~~~~~i~~~i~~~~~  131 (358)
                      +.|++.++|+++++++++.....        +.|..+.+++.+.|.+...
T Consensus       110 ~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~  159 (188)
T 2cvb_A          110 KAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLR  159 (188)
T ss_dssp             HHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             HHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHc
Confidence            99999999999999777654332        1233467888888877544

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.13  E-value=1.6e-10  Score=93.03  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=76.0

Q ss_pred             CCCcEEEEEcCCCCcc-cchhhhhHHHHHHHhcCC---CCeEEEEEeCccc----------------------------H
Q 018270          158 KSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLE---DDVVVANLDADKY----------------------------K  205 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~-c~~~~~~~~~la~~~~~~---~~v~~~~vd~~~~----------------------------~  205 (358)
                      .+++++|.||++||++ |+...|.+.++.+.+...   .++.++.|+++..                            .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            5789999999999998 999999999999998642   3677777776531                            2


Q ss_pred             HHHHhcCCCccc---------------EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          206 DLAEKYGVSGFP---------------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       206 ~l~~~~~v~~~P---------------ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      .+++.||+...|               +++++.++++....+.|..+.+++.+.|.+.+.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            488899999999               778887666777788899999999999987654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.12  E-value=2.6e-10  Score=92.54  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=76.0

Q ss_pred             CCCcEEEEEcCCCCcc-cchhhhhHHHHHHHhcC---CCCeEEEEEeCccc----------------------------H
Q 018270          158 KSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTL---EDDVVVANLDADKY----------------------------K  205 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~-c~~~~~~~~~la~~~~~---~~~v~~~~vd~~~~----------------------------~  205 (358)
                      .+++++|.||++||++ |+...|.+.++.+.+..   ..++.++.|+++..                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            5789999999999998 99999999999999853   24677777776521                            2


Q ss_pred             HHHHhcCCCccc---------------EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          206 DLAEKYGVSGFP---------------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       206 ~l~~~~~v~~~P---------------ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      .+++.|+|...|               +++++...++....+.|..+.+++.+.|.+.+.
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            588899999888               888887666777778899999999999887654

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=6.2e-12  Score=101.01  Aligned_cols=93  Identities=22%  Similarity=0.348  Sum_probs=68.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHH-HHHHhcCCCCeEEEEEeCcccHHHHHh----------------------cC--
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEK-VAAAFTLEDDVVVANLDADKYKDLAEK----------------------YG--  212 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~-la~~~~~~~~v~~~~vd~~~~~~l~~~----------------------~~--  212 (358)
                      .+++++|.||++||++|+...|.+.+ +...+....++.++.|++++..+..++                      |+  
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            56899999999999999999999998 888886345788888887765433333                      33  


Q ss_pred             CCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          213 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       213 v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      +.++|+++++..+++....+.| .+.+++.+++++..+.
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~~~  149 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQINEM  149 (159)
Confidence            5679999999655555555555 5666777777655443

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=6.5e-12  Score=100.92  Aligned_cols=90  Identities=21%  Similarity=0.285  Sum_probs=68.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHH-HHHHhhcCCceEEEEEeCccchhhHhhcC------------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEK-LGASFKKAKSVLIGKVDCDEHKSLCSKYG------------------------   93 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~-~~~~~~~~~~v~~~~vd~~~~~~l~~~~~------------------------   93 (358)
                      .+++++|.||++||++|+...|.+.+ +.+.+.....+.++.|+++...+.+++|.                        
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            57899999999999999999999998 88887633568888888876654444433                        


Q ss_pred             ccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           94 VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        94 i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +.++|+++++++++.....+.| .+.+++.+++...
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l  146 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQI  146 (159)
Confidence            5679999999777666556665 5666777777654

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.11  E-value=4.9e-10  Score=94.90  Aligned_cols=94  Identities=15%  Similarity=0.248  Sum_probs=74.0

Q ss_pred             CCC-cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------------------------ccHHH
Q 018270          158 KSK-DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------KYKDL  207 (358)
Q Consensus       158 ~~~-~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------------~~~~l  207 (358)
                      .++ +++|.||++||++|+...|.+.++++.|.. .++.++.|+++                             ....+
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~  135 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIREALAKFAGDYAG-QGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSV  135 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTT-TTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHH
T ss_pred             CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHh-CCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHH
Confidence            456 599999999999999999999999999964 35888888873                             34579


Q ss_pred             HHhcCCCcccEEEEEeCCCcceeee---------cCCCCHHHHHHHHHHhcCCC
Q 018270          208 AEKYGVSGFPTLKFFPKGNKDGEEY---------GGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       208 ~~~~~v~~~Pti~~~~~g~~~~~~~---------~g~~~~~~l~~~i~~~~~~~  252 (358)
                      ++.|++.++|+++++..+++.....         .+..+.++|.+.|.+.+...
T Consensus       136 ~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~  189 (218)
T 3u5r_E          136 AKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK  189 (218)
T ss_dssp             HHHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred             HHHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence            9999999999999997666533221         12356789999998887543

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.11  E-value=2.9e-11  Score=91.64  Aligned_cols=87  Identities=23%  Similarity=0.367  Sum_probs=61.6

Q ss_pred             cHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----HHHHHhcCCCcccEEEEEeC
Q 018270          150 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVSGFPTLKFFPK  224 (358)
Q Consensus       150 ~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~~Pti~~~~~  224 (358)
                      .+++++  .++++++ ||++||++|+.+.|.+.+++..      +.++.+|.+..     ..++++||+.++|++  |.+
T Consensus        12 ~~~~~~--~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~------~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~   80 (116)
T 2e7p_A           12 KAKELA--SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS------YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIG   80 (116)
T ss_dssp             HHHHHH--TSSSEEE-EECTTCHHHHHHHHHHHHHTCC------CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred             HHHHHH--cCCCEEE-EECCCChhHHHHHHHHHHcCCC------eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence            344444  3455655 9999999999999999988543      46777777655     579999999999998  445


Q ss_pred             CCcceeeecCCC---CHHHHHHHHHHh
Q 018270          225 GNKDGEEYGGGR---DLEDFVSFINEK  248 (358)
Q Consensus       225 g~~~~~~~~g~~---~~~~l~~~i~~~  248 (358)
                      | +....+.|..   +.+.|.++|++.
T Consensus        81 g-~~v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           81 G-KQIGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             T-EEEECHHHHHHHHHTTCHHHHHHHT
T ss_pred             C-EEECChHHHHHHHhCChHHHHHHHc
Confidence            5 3444444433   556777887653

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.67  E-value=1.1e-11  Score=97.41  Aligned_cols=71  Identities=23%  Similarity=0.409  Sum_probs=59.3

Q ss_pred             CCC-cEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccc-------------------------hhhHhh
Q 018270           39 QDR-GALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEH-------------------------KSLCSK   91 (358)
Q Consensus        39 ~~~-~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~   91 (358)
                      .++ +++|.||++||++|+...|.+.++++.++.. ..+.++.|+++..                         .++++.
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            356 9999999999999999999999999988532 4677777877654                         368899


Q ss_pred             cCccCCCeEEEccCCCCC
Q 018270           92 YGVQGYPTIQWFPKGSLE  109 (358)
Q Consensus        92 ~~i~~~P~l~~~~~~~~~  109 (358)
                      |+|.++|++++++++|..
T Consensus       104 ~~v~~~P~~~lid~~G~i  121 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTL  121 (143)
Confidence            999999999999866654

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.07  E-value=3.3e-10  Score=91.18  Aligned_cols=92  Identities=10%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             CCCcEEEEEECCCChh-hhhhhHHHHHHHHHhhcC---CceEEEEEeCccc----------------------------h
Q 018270           39 QDRGALVEFYAPWCGH-CKKLAPEYEKLGASFKKA---KSVLIGKVDCDEH----------------------------K   86 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~-C~~~~~~~~~~~~~~~~~---~~v~~~~vd~~~~----------------------------~   86 (358)
                      .+++++|.||++||++ |....|.+.++.++++..   .++.++.|+++..                            .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 999999999999998742   3688888877642                            1


Q ss_pred             hhHhhcCccCCC---------------eEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           87 SLCSKYGVQGYP---------------TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        87 ~l~~~~~i~~~P---------------~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      .+++.|++...|               +++++++++.....+.|..+.+++.+.|.+..
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  160 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM  160 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            478899999999               78888887777678889899999998887653

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.07  E-value=1.7e-10  Score=93.71  Aligned_cols=90  Identities=17%  Similarity=0.200  Sum_probs=73.0

Q ss_pred             CCCcEEEEEcCCCCcc-cchhhhhHHHHHHHhcCC--CCeEEEEEeCccc----------------------------HH
Q 018270          158 KSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLE--DDVVVANLDADKY----------------------------KD  206 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~-c~~~~~~~~~la~~~~~~--~~v~~~~vd~~~~----------------------------~~  206 (358)
                      .+++++|.||++||++ |+...|.+.++.+.+...  .++.++.|+++..                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            5789999999999998 999999999999998643  2688888887632                            35


Q ss_pred             HHHhcCC---------------CcccEEEEEeCCCcceeeecCCC--CHHHHHHHHHHh
Q 018270          207 LAEKYGV---------------SGFPTLKFFPKGNKDGEEYGGGR--DLEDFVSFINEK  248 (358)
Q Consensus       207 l~~~~~v---------------~~~Pti~~~~~g~~~~~~~~g~~--~~~~l~~~i~~~  248 (358)
                      +++.|++               .++|+++++. +++....+.|..  +.+++.+.|++.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            6667664               5789999999 777777788877  899999988763

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.07  E-value=4.3e-10  Score=91.19  Aligned_cols=92  Identities=16%  Similarity=0.171  Sum_probs=76.1

Q ss_pred             CCCcEEEEEECCCChh-hhhhhHHHHHHHHHhhc---CCceEEEEEeCccc----------------------------h
Q 018270           39 QDRGALVEFYAPWCGH-CKKLAPEYEKLGASFKK---AKSVLIGKVDCDEH----------------------------K   86 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~-C~~~~~~~~~~~~~~~~---~~~v~~~~vd~~~~----------------------------~   86 (358)
                      .+++++|.||++||++ |....|.+.++.++++.   ..++.++.|+++..                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4689999999999998 99999999999999964   24688888887631                            2


Q ss_pred             hhHhhcCccCCC---------------eEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           87 SLCSKYGVQGYP---------------TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        87 ~l~~~~~i~~~P---------------~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      .+++.|++...|               +++++++++.....+.|..+.+++.+.|....
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            578899999888               88888877777677889999999998887653

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.07  E-value=1.5e-10  Score=85.16  Aligned_cols=80  Identities=13%  Similarity=0.192  Sum_probs=64.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeCCCcceeeecCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG  235 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~  235 (358)
                      ...++++.|+++||++|+.+.|.+++++.      ++.+..+|++  ++++++++|| .++|++  |.+|..  . ..+.
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~------~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~--~-~~~g   81 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD------RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQF--L-MMHR   81 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS------SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSE--E-EESS
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh------CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEE--E-EecC
Confidence            45678999999999999999999887643      3788889988  7889999999 999986  445532  2 3566


Q ss_pred             CCHHHHHHHHHHhc
Q 018270          236 RDLEDFVSFINEKC  249 (358)
Q Consensus       236 ~~~~~l~~~i~~~~  249 (358)
                      .+.+.|.++|.+..
T Consensus        82 ~~~~~l~~~l~~~~   95 (100)
T 1wjk_A           82 VNTSKLEKQLRKLS   95 (100)
T ss_dssp             CCHHHHHHHHHSSS
T ss_pred             CCHHHHHHHHHHHH
Confidence            89999999998654

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.06  E-value=4.6e-10  Score=95.07  Aligned_cols=90  Identities=16%  Similarity=0.287  Sum_probs=72.1

Q ss_pred             CCC-cEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-----------------------------cchhh
Q 018270           39 QDR-GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-----------------------------EHKSL   88 (358)
Q Consensus        39 ~~~-~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----------------------------~~~~l   88 (358)
                      .++ +++|.||++||++|+...|.+.++.+++++ ..+.++.|+++                             .+..+
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~  135 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIREALAKFAGDYAG-QGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSV  135 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTT-TTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHH
T ss_pred             CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHh-CCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHH
Confidence            456 599999999999999999999999999975 34888888883                             45678


Q ss_pred             HhhcCccCCCeEEEccCCCCCcccccC-----------CCCHHHHHHHHhccCC
Q 018270           89 CSKYGVQGYPTIQWFPKGSLEPKKYEG-----------PRSTEALAEYVNNEGG  131 (358)
Q Consensus        89 ~~~~~i~~~P~l~~~~~~~~~~~~~~g-----------~~~~~~i~~~i~~~~~  131 (358)
                      ++.|++.++|+++++++++..  .|.|           ..+.+++.+.|++...
T Consensus       136 ~~~~~v~~~P~~~liD~~G~i--~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~  187 (218)
T 3u5r_E          136 AKAYGAACTPDFFLYDRERRL--VYHGQFDDARPGNGKDVTGADLRAAVDAVLK  187 (218)
T ss_dssp             HHHHTCCEESEEEEECTTCBE--EEEECSSSCCTTSCCCCCCHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCeEEEECCCCcE--EEeccccccccccccccCHHHHHHHHHHHHc
Confidence            999999999999999877654  3433           3456788888877543

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.06  E-value=3.7e-10  Score=91.75  Aligned_cols=91  Identities=20%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------ccHHHH------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------KYKDLA------------------  208 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------~~~~l~------------------  208 (358)
                      .+++++|.||++||++|+ ..|.+.++.+.+... ++.++.|+++           ....++                  
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~  108 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE-GFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG  108 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG-TEEEEEEEECSCC------------------CCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCC
Confidence            578999999999999999 999999999999743 5777777653           111222                  


Q ss_pred             ------------HhcCCCccc------EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          209 ------------EKYGVSGFP------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       209 ------------~~~~v~~~P------ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                                  +.|++.++|      +.+++.++++....+.|..+.+++.+.|.+.+.
T Consensus       109 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          109 GNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             ccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                        247888999      888887666777788898899999999887764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.06  E-value=7e-10  Score=106.38  Aligned_cols=96  Identities=13%  Similarity=0.189  Sum_probs=80.4

Q ss_pred             EEcChhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           26 VVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        26 ~~l~~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      ..++++.++.+.+ ..+..++.||++||++|+.+.|.+++++..+   +++.+..+|.++.++++.+|+|.++|++++  
T Consensus       102 ~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~---~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--  176 (521)
T 1hyu_A          102 SKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN---PRIKHTAIDGGTFQNEITERNVMGVPAVFV--  176 (521)
T ss_dssp             CCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC---TTEEEEEEETTTCHHHHHHTTCCSSSEEEE--
T ss_pred             CCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHc---CceEEEEEechhhHHHHHHhCCCccCEEEE--
Confidence            4567777776653 3556788999999999999999999999886   469999999999999999999999999977  


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhcc
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +|. .  ...|..+.+++.+|+...
T Consensus       177 ~g~-~--~~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          177 NGK-E--FGQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             TTE-E--EEESCCCHHHHHHHHCCS
T ss_pred             CCE-E--EecCCCCHHHHHHHHhhc
Confidence            443 2  244999999999999875

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.04  E-value=1.3e-10  Score=94.44  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=72.8

Q ss_pred             CCCcEEEEEECCCChh-hhhhhHHHHHHHHHhhcC--CceEEEEEeCccc----------------------------hh
Q 018270           39 QDRGALVEFYAPWCGH-CKKLAPEYEKLGASFKKA--KSVLIGKVDCDEH----------------------------KS   87 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~-C~~~~~~~~~~~~~~~~~--~~v~~~~vd~~~~----------------------------~~   87 (358)
                      .+++++|.||++||++ |+...|.+.++.+++++.  .++.++.|+++.+                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            5789999999999997 999999999999998753  2688999998742                            24


Q ss_pred             hHhhcC---------------ccCCCeEEEccCCCCCcccccCCC--CHHHHHHHHhcc
Q 018270           88 LCSKYG---------------VQGYPTIQWFPKGSLEPKKYEGPR--STEALAEYVNNE  129 (358)
Q Consensus        88 l~~~~~---------------i~~~P~l~~~~~~~~~~~~~~g~~--~~~~i~~~i~~~  129 (358)
                      +++.|+               +.++|++++++ ++.....+.|..  +.+++.+.|++.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            556655               46889999999 776667777877  888999888753

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.60  E-value=2.4e-11  Score=95.50  Aligned_cols=70  Identities=23%  Similarity=0.520  Sum_probs=57.5

Q ss_pred             CCC-cEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCccc-------------------------HHHHHh
Q 018270          158 KSK-DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY-------------------------KDLAEK  210 (358)
Q Consensus       158 ~~~-~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~  210 (358)
                      .++ +++|.||++||++|+.+.|.+.++++.++.. .++.++.|+++..                         ..+++.
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            456 9999999999999999999999999988532 3677777776644                         368999


Q ss_pred             cCCCcccEEEEEeCCCc
Q 018270          211 YGVSGFPTLKFFPKGNK  227 (358)
Q Consensus       211 ~~v~~~Pti~~~~~g~~  227 (358)
                      |+|.++|+++++.++|+
T Consensus       104 ~~v~~~P~~~lid~~G~  120 (143)
T 2lus_A          104 YGITGIPALVIVKKDGT  120 (143)
Confidence            99999999999985544

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.03  E-value=1.1e-09  Score=90.45  Aligned_cols=93  Identities=15%  Similarity=0.193  Sum_probs=70.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--------ccHHHHH--------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------KYKDLAE--------------------  209 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--------~~~~l~~--------------------  209 (358)
                      .+++++|.||++||++|+...|.+.++.+.|+.. ++.++.|.++        ....+.+                    
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  123 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  123 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCC
Confidence            6789999999999999999999999999999754 5777777654        1122211                    


Q ss_pred             ----------------hcCCCccc---EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcCC
Q 018270          210 ----------------KYGVSGFP---TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       210 ----------------~~~v~~~P---ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                                      .+++.++|   +.+++..++.....+.|..+.+++.+.|.+.+..
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          124 ENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             C-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred             cchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence                            12444667   8888877777777889999999999999887653

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.03  E-value=7.6e-10  Score=88.98  Aligned_cols=77  Identities=21%  Similarity=0.204  Sum_probs=64.2

Q ss_pred             CCCc-EEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------------------ccHHHHHhcCCC
Q 018270          158 KSKD-VLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------KYKDLAEKYGVS  214 (358)
Q Consensus       158 ~~~~-v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~v~  214 (358)
                      .++. ++|.|| ++||++|+...|.+.++++.+.. .++.++.|+.+                     ....+++.|++.
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~-~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD-YDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAK  105 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHT-TCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH-cCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence            4565 999999 99999999999999999999974 35778777776                     345789999999


Q ss_pred             c----ccEEEEEeCCCcceeeecCC
Q 018270          215 G----FPTLKFFPKGNKDGEEYGGG  235 (358)
Q Consensus       215 ~----~Pti~~~~~g~~~~~~~~g~  235 (358)
                      +    +|+.+++..+++....+.|.
T Consensus       106 ~~~~~~P~~~lid~~G~i~~~~~g~  130 (161)
T 3drn_A          106 GFILPARITFVIDKKGIIRHIYNSQ  130 (161)
T ss_dssp             CSSSCCCEEEEECTTSBEEEEEECS
T ss_pred             CcCcccceEEEECCCCEEEEEEecC
Confidence            9    99999998777766677773

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.03  E-value=9.9e-11  Score=82.40  Aligned_cols=58  Identities=24%  Similarity=0.305  Sum_probs=48.2

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-ccHHHHHhcCCCcccEEEE
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~l~~~~~v~~~Pti~~  221 (358)
                      -++.||++||++|+.+.|.++++++.+.  .++.++.+|.+ +..+++++||+.++|++++
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i   61 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSK--YTVEIVHLGTDKARIAEAEKAGVKSVPALVI   61 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTT--EEEEEEETTTCSSTHHHHHHHTCCEEEEEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcC--CeEEEEEecCChhhHHHHHHcCCCcCCEEEE
Confidence            3788999999999999999999877652  35667777765 5778999999999999877

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.02  E-value=6.1e-11  Score=89.84  Aligned_cols=88  Identities=17%  Similarity=0.297  Sum_probs=61.9

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-----hhhHhhcCccCCCeEEEccC
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----KSLCSKYGVQGYPTIQWFPK  105 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~P~l~~~~~  105 (358)
                      +.+.+.++ ++++++ ||++||++|+.+.|.+.++...      +.++.+|.+.+     ..+++.|++.++|++  |.+
T Consensus        11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~~~~~l~~~~~~------~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~   80 (116)
T 2e7p_A           11 KKAKELAS-SAPVVV-FSKTYCGYCNRVKQLLTQVGAS------YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIG   80 (116)
T ss_dssp             HHHHHHHT-SSSEEE-EECTTCHHHHHHHHHHHHHTCC------CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred             HHHHHHHc-CCCEEE-EECCCChhHHHHHHHHHHcCCC------eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence            34455554 456666 9999999999999999887533      45667776655     568999999999999  334


Q ss_pred             CCCCcccccCCC---CHHHHHHHHhcc
Q 018270          106 GSLEPKKYEGPR---STEALAEYVNNE  129 (358)
Q Consensus       106 ~~~~~~~~~g~~---~~~~i~~~i~~~  129 (358)
                      |. ....+.|..   +.+.+.+++.+.
T Consensus        81 g~-~v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           81 GK-QIGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             TE-EEECHHHHHHHHHTTCHHHHHHHT
T ss_pred             CE-EECChHHHHHHHhCChHHHHHHHc
Confidence            43 334454443   556778888764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.02  E-value=1.1e-09  Score=90.57  Aligned_cols=92  Identities=16%  Similarity=0.172  Sum_probs=72.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--------c---HHHH-Hh---------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLA-EK---------------  210 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--------~---~~l~-~~---------------  210 (358)
                      .+++++|.||++||++|+...|.+.++.+.+... ++.++.|+++.        .   ..++ ++               
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~  125 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  125 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC-CeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCc
Confidence            5789999999999999999999999999999743 57788787652        1   1223 22               


Q ss_pred             --------------cCCCccc------EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          211 --------------YGVSGFP------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       211 --------------~~v~~~P------ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                                    |++.++|      +.+++..+++....+.|..+.+.+.+.|.+.+.
T Consensus       126 ~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          126 ENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                          4777888      778877666677788899999999999987654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.02  E-value=9.4e-10  Score=88.42  Aligned_cols=89  Identities=15%  Similarity=0.172  Sum_probs=69.9

Q ss_pred             CCCc-EEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------cchhhHhhcCcc
Q 018270           39 QDRG-ALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------EHKSLCSKYGVQ   95 (358)
Q Consensus        39 ~~~~-~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~i~   95 (358)
                      .+++ ++|.|| ++||++|....|.+.++.+++++. .+.++.|+.+                     .+.++++.|++.
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY-DVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAK  105 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT-CEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence            4565 999999 999999999999999999999753 4888888876                     456789999999


Q ss_pred             C----CCeEEEccCCCCCcccccCC-CC---HHHHHHHHhc
Q 018270           96 G----YPTIQWFPKGSLEPKKYEGP-RS---TEALAEYVNN  128 (358)
Q Consensus        96 ~----~P~l~~~~~~~~~~~~~~g~-~~---~~~i~~~i~~  128 (358)
                      +    +|+++++++++.....+.|. ..   .+++.+.+.+
T Consensus       106 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~  146 (161)
T 3drn_A          106 GFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ  146 (161)
T ss_dssp             CSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             CcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence            9    99999998877665677773 22   3444444443

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.01  E-value=1.2e-09  Score=88.46  Aligned_cols=92  Identities=12%  Similarity=0.164  Sum_probs=71.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--------c---HHHHH-hc--------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLAE-KY--------------  211 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--------~---~~l~~-~~--------------  211 (358)
                      .+++++|.||++||++|+...|.+.++++.+... ++.++.|+++.        .   ..+++ ++              
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  109 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ-GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNG  109 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCC
Confidence            5789999999999999999999999999999743 58888887642        1   22333 33              


Q ss_pred             ---------------CC--Cccc---EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          212 ---------------GV--SGFP---TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       212 ---------------~v--~~~P---ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                                     ++  .++|   +.+++..+++....+.|..+.+++.+.|.+.+.
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          110 ENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             CchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                           44  5678   888887666777788898899999999887654

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.01  E-value=4.5e-10  Score=91.30  Aligned_cols=90  Identities=21%  Similarity=0.277  Sum_probs=69.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-----------cchhhH------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-----------EHKSLC------------------   89 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----------~~~~l~------------------   89 (358)
                      .+++++|.||++||++|+ ..|.+.++.+++++ ..+.++.|+++           ...+++                  
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~  108 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKD-EGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG  108 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGG-GTEEEEEEEECSCC------------------CCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhcc-CCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCC
Confidence            578999999999999999 99999999999975 34888888763           111122                  


Q ss_pred             ------------hhcCccCCC------eEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           90 ------------SKYGVQGYP------TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        90 ------------~~~~i~~~P------~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                                  +.|++.++|      +++++++++.....+.|..+.+++.+.|.+..
T Consensus       109 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  167 (171)
T 3cmi_A          109 GNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL  167 (171)
T ss_dssp             TTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             ccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence                        246888999      88888877777677888888888888887654

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.99  E-value=1.6e-09  Score=90.07  Aligned_cols=92  Identities=13%  Similarity=0.167  Sum_probs=75.3

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~  211 (358)
                      .+++++|.|| ++||++|+...|.+.++.+.+.. .++.++.|+.+.                         ...+++.|
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  122 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED-RDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  122 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHh
Confidence            4689999999 99999999999999999999964 357777777653                         34688899


Q ss_pred             CCC-----cccEEEEEeCCCcceeeecCCC----CHHHHHHHHHHhcC
Q 018270          212 GVS-----GFPTLKFFPKGNKDGEEYGGGR----DLEDFVSFINEKCG  250 (358)
Q Consensus       212 ~v~-----~~Pti~~~~~g~~~~~~~~g~~----~~~~l~~~i~~~~~  250 (358)
                      ++.     ++|+++++..+++....+.|..    +.+++.+.|++...
T Consensus       123 ~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          123 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             CCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            999     9999999987767666666643    78999999987654

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.99  E-value=8.4e-10  Score=89.33  Aligned_cols=92  Identities=15%  Similarity=0.214  Sum_probs=71.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------c----hhhHh-hc--------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------H----KSLCS-KY--------------   92 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~-~~--------------   92 (358)
                      .+++++|.||++||++|+...|.+.++.+++++. .+.++.|+++.       .    .++++ ++              
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  109 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ-GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNG  109 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCC
Confidence            5789999999999999999999999999999753 58888898752       1    22333 32              


Q ss_pred             ---------------Cc--cCCC---eEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           93 ---------------GV--QGYP---TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        93 ---------------~i--~~~P---~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                                     ++  .++|   +++++++++.....+.|..+.+++.+.|.+...
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          110 ENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             CchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                           34  5678   888888777776778888888888888877643

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.98  E-value=1.3e-09  Score=89.85  Aligned_cols=91  Identities=16%  Similarity=0.129  Sum_probs=73.8

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~  211 (358)
                      .+++++|.|| ++||++|+...|.+.++++.+... ++.++.|+.+.                         +..+++.|
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  108 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHh
Confidence            4689999999 999999999999999999998643 57777777653                         34688999


Q ss_pred             CCC------cccEEEEEeCCCcceeeecCC----CCHHHHHHHHHHhc
Q 018270          212 GVS------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  249 (358)
Q Consensus       212 ~v~------~~Pti~~~~~g~~~~~~~~g~----~~~~~l~~~i~~~~  249 (358)
                      ++.      ++|+++++..+++....+.|.    ++.+++.+.|++..
T Consensus       109 ~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            998      899999997766666666664    37888888887654

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.98  E-value=2e-09  Score=87.03  Aligned_cols=91  Identities=14%  Similarity=0.133  Sum_probs=68.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--------c---HHH-HHhc--------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDL-AEKY--------------  211 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--------~---~~l-~~~~--------------  211 (358)
                      .+++++|.||++||++|+...|.+.++.+.+.. .++.++.|+++.        .   ... .+++              
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVG-KGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNG  108 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhc-CCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecC
Confidence            578999999999999999999999999999964 358888887642        1   122 2333              


Q ss_pred             ---------------C-----CCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          212 ---------------G-----VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       212 ---------------~-----v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                                     |     |..+|+.+++..+++....+.|..+.+++.+.|.+.+
T Consensus       109 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A          109 SDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             TTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence                           3     3335788888776677777888888888888887654

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.97  E-value=1.1e-09  Score=91.26  Aligned_cols=91  Identities=13%  Similarity=0.209  Sum_probs=74.6

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .+++++|.|| ++||++|+...|.+.++++.+.. .++.++.|+.+.                            +..++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE-KGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHH
Confidence            5789999999 99999999999999999999864 357777777653                            34788


Q ss_pred             HhcCCC-----cccEEEEEeCCCcceeeecCCC----CHHHHHHHHHHhc
Q 018270          209 EKYGVS-----GFPTLKFFPKGNKDGEEYGGGR----DLEDFVSFINEKC  249 (358)
Q Consensus       209 ~~~~v~-----~~Pti~~~~~g~~~~~~~~g~~----~~~~l~~~i~~~~  249 (358)
                      +.|++.     ++|+.+++..+++....+.|..    +.+++.+.|++..
T Consensus       111 ~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            999999     9999999987777666666653    7889999988764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.97  E-value=1.8e-09  Score=89.33  Aligned_cols=91  Identities=14%  Similarity=0.152  Sum_probs=72.3

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------c----hhhH-hh---------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------H----KSLC-SK---------------   91 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~---------------   91 (358)
                      .+++++|.||++||++|+...|.+.++.+++++. .+.++.|+++.       .    .+++ ++               
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~  125 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  125 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC-CeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCc
Confidence            5789999999999999999999999999999753 48888888762       1    1222 22               


Q ss_pred             --------------cCccCCC------eEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           92 --------------YGVQGYP------TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        92 --------------~~i~~~P------~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                                    +++.++|      +++++.+++.....+.|..+.+++.+.|.+..
T Consensus       126 ~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  184 (190)
T 2vup_A          126 ENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL  184 (190)
T ss_dssp             TTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence                          4778888      88888777777677889889999998887654

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.96  E-value=1.3e-09  Score=88.20  Aligned_cols=90  Identities=16%  Similarity=0.198  Sum_probs=68.5

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------c----hhh-Hhhc--------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------H----KSL-CSKY--------------   92 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l-~~~~--------------   92 (358)
                      .+++++|.||++||++|+...|.+.++.+++++ ..+.++.|+++.       .    .++ .+++              
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVG-KGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNG  108 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhc-CCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecC
Confidence            578999999999999999999999999999975 358888888752       1    122 1222              


Q ss_pred             ---------------C-----ccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           93 ---------------G-----VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        93 ---------------~-----i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                                     +     |..+|+++++.+++.....+.|..+.+++.+.|.+.
T Consensus       109 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  165 (169)
T 2v1m_A          109 SDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL  165 (169)
T ss_dssp             TTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence                           3     334588888887777667788888888888877654

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.95  E-value=2.7e-09  Score=85.46  Aligned_cols=89  Identities=15%  Similarity=0.212  Sum_probs=69.1

Q ss_pred             CCC-cEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-----------------------cHHHHHhcC
Q 018270          158 KSK-DVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYG  212 (358)
Q Consensus       158 ~~~-~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~  212 (358)
                      .++ +++|.|| ++||++|+...|.+.++++.+.. .++.++.|+.+.                       +..+++.|+
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  112 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN-DDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYG  112 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS-SSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTT
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcC
Confidence            455 8999998 99999999999999999999863 368788777753                       567899999


Q ss_pred             CC----ccc--EEEEEeCCCcceeeecCCC----CHHHHHHHHHH
Q 018270          213 VS----GFP--TLKFFPKGNKDGEEYGGGR----DLEDFVSFINE  247 (358)
Q Consensus       213 v~----~~P--ti~~~~~g~~~~~~~~g~~----~~~~l~~~i~~  247 (358)
                      +.    ++|  +.+++..++.....+.|..    ..+++.+.|.+
T Consensus       113 v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          113 VFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             CEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             CccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            98    999  7888776666666666653    45666666653

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.95  E-value=1.9e-09  Score=88.38  Aligned_cols=90  Identities=13%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------c----hhhHhh-c--------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------H----KSLCSK-Y--------------   92 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~~-~--------------   92 (358)
                      .+++++|.||++||++|+...|.+.++.+++++ ..+.++.|+++.       .    .+++++ +              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g  126 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGP-HHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTG  126 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhc-CCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCC
Confidence            578999999999999999999999999999975 348888888752       1    223333 2              


Q ss_pred             ---------CccCCC-------eEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           93 ---------GVQGYP-------TIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        93 ---------~i~~~P-------~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                               ++.++|       +.+++.+++.....+.|..+.+++.+.|.+.
T Consensus       127 ~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  179 (181)
T 2p31_A          127 TGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL  179 (181)
T ss_dssp             TTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTT
T ss_pred             ccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence                     245668       7777777776667788888888888888765

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.94  E-value=2e-09  Score=88.35  Aligned_cols=90  Identities=12%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--------c---HHHHHh-cC-------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLAEK-YG-------------  212 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--------~---~~l~~~-~~-------------  212 (358)
                      .+++++|.||++||++|+...|.+.++++.+.. .++.++.|+++.        .   ..++++ ++             
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g  126 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGP-HHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTG  126 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhc-CCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCC
Confidence            578999999999999999999999999999974 358888887652        1   223333 32             


Q ss_pred             ----------CCccc-------EEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          213 ----------VSGFP-------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       213 ----------v~~~P-------ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                                +.++|       +.+++..+++....+.|..+.+++.+.|.+.
T Consensus       127 ~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  179 (181)
T 2p31_A          127 TGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL  179 (181)
T ss_dssp             TTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTT
T ss_pred             ccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence                      44568       7777766666677788888999999888764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.94  E-value=1.4e-09  Score=90.42  Aligned_cols=91  Identities=13%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------------------------chhhHhhc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------------HKSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (358)
                      .+++++|.|| ++||++|....|.+.++.+++++ ..+.++.|+.+.                         +.++++.|
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  122 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED-RDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  122 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHh
Confidence            4689999999 99999999999999999999974 358888887763                         34678899


Q ss_pred             Ccc-----CCCeEEEccCCCCCcccccCCC----CHHHHHHHHhccC
Q 018270           93 GVQ-----GYPTIQWFPKGSLEPKKYEGPR----STEALAEYVNNEG  130 (358)
Q Consensus        93 ~i~-----~~P~l~~~~~~~~~~~~~~g~~----~~~~i~~~i~~~~  130 (358)
                      ++.     ++|+++++++++.....+.|..    +.+++.+.|....
T Consensus       123 ~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          123 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            999     9999999987776656665543    7888988887654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.94  E-value=1.1e-09  Score=80.56  Aligned_cols=81  Identities=16%  Similarity=0.233  Sum_probs=64.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc--cchhhHhhcCccCCCeEEEccCCCCCcccccCC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP  116 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~  116 (358)
                      ...+.++.|+++||++|+.+.+.+++++.      .+.+..+|.+  ++.+++++|| .++|+++  .+|. . . ..|.
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~------~i~~~~vdi~~~~~~el~~~~g-~~vP~l~--~~g~-~-~-~~~g   81 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD------RFILQEVDITLPENSTWYERYK-FDIPVFH--LNGQ-F-L-MMHR   81 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS------SSEEEEEETTSSTTHHHHHHSS-SSCSEEE--ESSS-E-E-EESS
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh------CCeEEEEECCCcchHHHHHHHC-CCCCEEE--ECCE-E-E-EecC
Confidence            35678999999999999999999886542      3788999998  7889999999 9999874  3443 2 2 3466


Q ss_pred             CCHHHHHHHHhccCC
Q 018270          117 RSTEALAEYVNNEGG  131 (358)
Q Consensus       117 ~~~~~i~~~i~~~~~  131 (358)
                      .+.+.|.++|.....
T Consensus        82 ~~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           82 VNTSKLEKQLRKLSG   96 (100)
T ss_dssp             CCHHHHHHHHHSSSC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            889999999987643

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.94  E-value=2.4e-09  Score=76.05  Aligned_cols=76  Identities=26%  Similarity=0.405  Sum_probs=59.3

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcC--CCcccEEEEEeCCCcceeeecCC
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYG--VSGFPTLKFFPKGNKDGEEYGGG  235 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~--v~~~Pti~~~~~g~~~~~~~~g~  235 (358)
                      -++.|+++||++|+.+.+.+++++..+.   ++.+..+|++.+    +++.+++|  +.++|++  |.+| +.   ..| 
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g-~~---i~~-   71 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQ-QH---IGG-   71 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETT-EE---EES-
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCC---CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECC-EE---EEC-
Confidence            3678999999999999999999998763   588888998765    37999999  9999998  3355 22   122 


Q ss_pred             CCHHHHHHHHHHhc
Q 018270          236 RDLEDFVSFINEKC  249 (358)
Q Consensus       236 ~~~~~l~~~i~~~~  249 (358)
                        .+++.+++.+.+
T Consensus        72 --~~~l~~~~~~~~   83 (85)
T 1ego_A           72 --YTDFAAWVKENL   83 (85)
T ss_dssp             --SHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhc
Confidence              368888887654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.93  E-value=1.3e-09  Score=89.93  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=73.5

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------------------------chhhHhhc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------------HKSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (358)
                      .+++++|.|| ++||++|....|.+.++.+++++. .+.++.|+.+.                         +.++++.|
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  108 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHh
Confidence            4689999999 999999999999999999999752 57888887764                         35678899


Q ss_pred             Ccc------CCCeEEEccCCCCCcccccCCC----CHHHHHHHHhcc
Q 018270           93 GVQ------GYPTIQWFPKGSLEPKKYEGPR----STEALAEYVNNE  129 (358)
Q Consensus        93 ~i~------~~P~l~~~~~~~~~~~~~~g~~----~~~~i~~~i~~~  129 (358)
                      ++.      ++|+++++++++.....+.|..    +.+++.+.|...
T Consensus       109 ~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  155 (187)
T 1we0_A          109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA  155 (187)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred             CCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            999      9999999987776656665543    678888888764

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.92  E-value=5.8e-10  Score=78.38  Aligned_cols=58  Identities=21%  Similarity=0.243  Sum_probs=48.7

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-cchhhHhhcCccCCCeEEE
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P~l~~  102 (358)
                      .++.||++||++|+.+.|.++++.+.++  ..+.+..+|.+ +..+++++||+.++|++++
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i   61 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSK--YTVEIVHLGTDKARIAEAEKAGVKSVPALVI   61 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTT--EEEEEEETTTCSSTHHHHHHHTCCEEEEEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcC--CeEEEEEecCChhhHHHHHHcCCCcCCEEEE
Confidence            4788999999999999999999887654  35667777765 5778899999999999987

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.92  E-value=9.3e-10  Score=91.68  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=73.7

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.|| ++||++|+...|.+.++.+++++ ..+.++.|+.+.                            +.+++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE-KGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHH
Confidence            4689999999 99999999999999999999875 357888887763                            35688


Q ss_pred             hhcCcc-----CCCeEEEccCCCCCcccccCCC----CHHHHHHHHhcc
Q 018270           90 SKYGVQ-----GYPTIQWFPKGSLEPKKYEGPR----STEALAEYVNNE  129 (358)
Q Consensus        90 ~~~~i~-----~~P~l~~~~~~~~~~~~~~g~~----~~~~i~~~i~~~  129 (358)
                      +.|++.     ++|+++++++++.....+.|..    +.+++.+.|...
T Consensus       111 ~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  159 (198)
T 1zof_A          111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (198)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            999999     9999999987776656665643    678888888764

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.92  E-value=2.1e-09  Score=86.19  Aligned_cols=89  Identities=11%  Similarity=0.184  Sum_probs=69.5

Q ss_pred             CCC-cEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-----------------------chhhHhhcC
Q 018270           39 QDR-GALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-----------------------HKSLCSKYG   93 (358)
Q Consensus        39 ~~~-~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~   93 (358)
                      .++ +++|.|| ++||++|+...|.+.++.+++++ ..+.++.|+++.                       +..+++.|+
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  112 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN-DDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYG  112 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS-SSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTT
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcC
Confidence            345 9999998 99999999999999999999864 358888888763                       567889999


Q ss_pred             cc----CCC--eEEEccCCCCCcccccCCC----CHHHHHHHHhc
Q 018270           94 VQ----GYP--TIQWFPKGSLEPKKYEGPR----STEALAEYVNN  128 (358)
Q Consensus        94 i~----~~P--~l~~~~~~~~~~~~~~g~~----~~~~i~~~i~~  128 (358)
                      +.    ++|  +++++++++.....+.|..    ..+++.+.+.+
T Consensus       113 v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          113 VFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             CEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             CccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            99    999  8888877776656666654    45566666543

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.91  E-value=3.9e-09  Score=88.54  Aligned_cols=44  Identities=16%  Similarity=0.178  Sum_probs=38.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .+++++|.||++||++|+...|.+.++++.|+.. ++.++.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~-g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC-CeEEEEEECC
Confidence            5789999999999999999999999999999743 5888888764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.91  E-value=3.4e-09  Score=87.43  Aligned_cols=92  Identities=12%  Similarity=0.112  Sum_probs=70.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------ch-hh---Hh-----------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------HK-SL---CS-----------------   90 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~~-~l---~~-----------------   90 (358)
                      .+++++|.||++||++|....|.+.++.+++++. .+.++.|+++.       .. ++   ++                 
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  123 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  123 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCC
Confidence            5789999999999999999999999999999753 47788887651       11 11   11                 


Q ss_pred             ----------------hcCccCCC---eEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           91 ----------------KYGVQGYP---TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        91 ----------------~~~i~~~P---~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                                      .+++..+|   +++++++++.....+.|..+.+++.+.|.+...
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          124 ENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             C-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC-
T ss_pred             cchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence                            12344667   888998887776788899999999999987654

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.88  E-value=4.3e-09  Score=86.42  Aligned_cols=89  Identities=17%  Similarity=0.205  Sum_probs=67.2

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------c----hhhHhhc---------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------H----KSLCSKY---------------   92 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~~~---------------   92 (358)
                      .+++++|.||++||++|....|.+.++.+++++ ..+.++.|+++.       .    .++++++               
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  124 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhc-CCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCc
Confidence            578999999999999999999999999999975 358888887752       1    1122222               


Q ss_pred             ----------------C-----ccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           93 ----------------G-----VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        93 ----------------~-----i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                                      +     |..+|+++++++++.....+.|..+.+++.+.|.+
T Consensus       125 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  181 (183)
T 2obi_A          125 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH  181 (183)
T ss_dssp             TSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGG
T ss_pred             chhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHH
Confidence                            3     33358988888777666778888888888777664

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.88  E-value=6e-09  Score=85.35  Aligned_cols=88  Identities=18%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-----------cHHHHHh-cCCC-----------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEK-YGVS-----------  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------~~~l~~~-~~v~-----------  214 (358)
                      .+++++|.||++||++|+...|.+.++++.|+. .++.++.|.++.           ...++++ +++.           
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~-~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGP-SHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILG  115 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTT-TSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhcc-CCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccC
Confidence            578999999999999999999999999999974 357788776542           2345666 6653           


Q ss_pred             ---------------cccE----EEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          215 ---------------GFPT----LKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       215 ---------------~~Pt----i~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                                     +.|+    .+++..+|+....+.|..+.+.+.+.|.
T Consensus       116 ~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~  166 (180)
T 3kij_A          116 SEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIA  166 (180)
T ss_dssp             TTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHH
T ss_pred             ccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHH
Confidence                           1354    4555544455556666666655555544

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.87  E-value=5.1e-09  Score=85.97  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=66.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------c----HHHHHhc---------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------Y----KDLAEKY---------------  211 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------~----~~l~~~~---------------  211 (358)
                      .+++++|.||++||++|+...|.+.++.+.|.. .++.++.|+++.       .    ..+++++               
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  124 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhc-CCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCc
Confidence            578999999999999999999999999999974 358888887641       1    1222222               


Q ss_pred             ----------------C-----CCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          212 ----------------G-----VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       212 ----------------~-----v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                                      +     |...|+.+++..+++....+.|..+.++|.+.|++
T Consensus       125 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  181 (183)
T 2obi_A          125 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH  181 (183)
T ss_dssp             TSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGG
T ss_pred             chhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHH
Confidence                            3     22358988887776777778888888888877654

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.85  E-value=5.2e-09  Score=87.79  Aligned_cols=44  Identities=14%  Similarity=0.209  Sum_probs=39.1

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .+++++|.||++||++|+...|.+.++.+++++. .+.++.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~-g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC-CeEEEEEECC
Confidence            5789999999999999999999999999999753 4888888875

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.85  E-value=4.1e-08  Score=83.52  Aligned_cols=109  Identities=13%  Similarity=0.070  Sum_probs=89.2

Q ss_pred             ccCCCeEEcChhhHHHHhcCCCcE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc--cchhhHhhcCcc-
Q 018270           20 ALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQ-   95 (358)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~~~~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~-   95 (358)
                      ...+.+.++|.+|+.+....+.+. ++.|+.+||++|..+.+.|.++|+.++  +.+.|+.+|++  ....+++.||+. 
T Consensus       110 ~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k--~~i~F~~vd~~~~~~~~~l~~fgl~~  187 (227)
T 4f9z_D          110 NSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQ--GKILFILVDSGMKENGKVISFFKLKE  187 (227)
T ss_dssp             HCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTT--TTCEEEEEETTSGGGHHHHHHTTCCG
T ss_pred             hCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhh--CCEEEEEeCCccHhHHHHHHHcCCCc
Confidence            345779999999999988766555 456778899999999999999999998  56999999996  356788999998 


Q ss_pred             -CCCeEEEccCCCCCcccc-cCCCCHHHHHHHHhccC
Q 018270           96 -GYPTIQWFPKGSLEPKKY-EGPRSTEALAEYVNNEG  130 (358)
Q Consensus        96 -~~P~l~~~~~~~~~~~~~-~g~~~~~~i~~~i~~~~  130 (358)
                       .+|++.+++..+...+.+ .|..+.+.|.+|++...
T Consensus       188 ~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~  224 (227)
T 4f9z_D          188 SQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFL  224 (227)
T ss_dssp             GGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHH
T ss_pred             ccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHh
Confidence             899999998655432333 37889999999998764

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.84  E-value=8.4e-09  Score=84.87  Aligned_cols=89  Identities=13%  Similarity=0.048  Sum_probs=64.9

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-----------cHHHHHhcCCC------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEKYGVS------------  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~v~------------  214 (358)
                      .+++++|.||++||++|+...|.+.++.+.++. .++.++.|+++.           ..++++++++.            
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  126 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  126 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhc-CCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCCh
Confidence            578999999999999999999999999999974 358888887642           12344444332            


Q ss_pred             ------------------------cccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          215 ------------------------GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       215 ------------------------~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                                              ..|+.+++.+.++....+.|..+.+++.+.|++
T Consensus       127 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  183 (185)
T 2gs3_A          127 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH  183 (185)
T ss_dssp             TBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHH
T ss_pred             hhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHH
Confidence                                    147777776666666677777777777766654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.83  E-value=4.9e-09  Score=88.54  Aligned_cols=83  Identities=24%  Similarity=0.370  Sum_probs=61.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE--------------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL--------------------------------------  199 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v--------------------------------------  199 (358)
                      .++++++.||++||++|+.+.|.+.++.+.   +-.+.+..+                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            467899999999999999999999998752   112222221                                      


Q ss_pred             ----eCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          200 ----DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       200 ----d~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                          ..+.+..+++++||+++||+ ++.+|    ..+.|..+.+.|.++|.+.
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG----~~~~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          162 SCDVDIADHYALGVQLGVSGTPAV-VLSNG----TLVPGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEE-ECTTS----CEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccCEE-EEcCC----eEecCCCCHHHHHHHHHHh
Confidence                12245678999999999998 45555    3567889999999998764

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.83  E-value=4.3e-08  Score=74.69  Aligned_cols=98  Identities=12%  Similarity=0.169  Sum_probs=80.1

Q ss_pred             CCCceEc-CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          140 PSNVVVL-TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       140 ~~~v~~l-~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      +..+..| +..++++++ .....++|.|+++||++|   .+.|.++|+.+   +++.|+.++   +.+++++|++. .|+
T Consensus        20 ~~~~~~i~s~~e~e~fi-~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~---~d~~F~~t~---~~~v~~~~~v~-~~~   88 (124)
T 2l4c_A           20 AQEPTWLTDVPAAMEFI-AATEVAVIGFFQDLEIPA---VPILHSMVQKF---PGVSFGIST---DSEVLTHYNIT-GNT   88 (124)
T ss_dssp             SCCCEECCSHHHHHHHH-HTSSEEEEEECSCTTSTH---HHHHHHHHHHC---TTSEEEEEC---CHHHHHHTTCC-SSC
T ss_pred             CCcceEcCCHHHHHHHH-hcCCCEEEEEECCCCChh---HHHHHHHHHhC---CCceEEEEC---hHHHHHHcCCC-CCe
Confidence            3445556 457788888 667889999999999998   67899999988   468888754   47799999998 899


Q ss_pred             EEEEeCCCcceeeecC----CCCHHHHHHHHHHh
Q 018270          219 LKFFPKGNKDGEEYGG----GRDLEDFVSFINEK  248 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~  248 (358)
                      +++|++.......|.|    ..+.++|.+||..+
T Consensus        89 vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           89 ICLFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             EEEEETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            9999987666677886    78999999999864

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.83  E-value=5.2e-09  Score=85.68  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=67.1

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------c----hhhHhh-cCcc-----------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------H----KSLCSK-YGVQ-----------   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~~-~~i~-----------   95 (358)
                      .+++++|.||++||++|+...|.+.++.+++++ ..+.++.|+++.       .    .+++++ +++.           
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~-~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGP-SHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILG  115 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTT-TSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhcc-CCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccC
Confidence            578999999999999999999999999999975 348888887643       1    345555 5432           


Q ss_pred             ---------------CCCe----EEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           96 ---------------GYPT----IQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        96 ---------------~~P~----l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                                     +.|+    .+++.++|.....+.|..+.+.+.+.|.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  168 (180)
T 3kij_A          116 SEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAAL  168 (180)
T ss_dssp             TTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHH
T ss_pred             ccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence                           2576    677777776667788888777766666544

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.81  E-value=1.4e-08  Score=84.80  Aligned_cols=91  Identities=18%  Similarity=0.218  Sum_probs=72.8

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .+++++|.|| ++||++|....|.+.++++.|+. .++.++.|+.+.                            ...++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~-~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  113 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD-IGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM  113 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHH
Confidence            4689999999 99999999999999999999963 457777777653                            34688


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHhc
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKC  249 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~~  249 (358)
                      +.|++.      ++|+++++.+++.....+.|    .++.+++.+.|+...
T Consensus       114 ~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          114 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            899999      99999999777665555544    356788888887654

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.81  E-value=8.8e-09  Score=84.73  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=39.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .+++++|.||++||++|+...|.+.++.+++++ ..+.++.|+++
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~-~~v~vv~is~d   91 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE-CGLRILAFPCN   91 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECC
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhc-CCeEEEEEECc
Confidence            568999999999999999999999999999975 35888888875

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.79  E-value=2.7e-08  Score=80.96  Aligned_cols=83  Identities=17%  Similarity=0.267  Sum_probs=64.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe-------------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-------------------------------------  200 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd-------------------------------------  200 (358)
                      .++++++.|+.+||++|+.+.|.+.++.+.+.   ++.+...+                                     
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~---~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~   97 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP---NVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGK   97 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCC---CEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Confidence            46778999999999999999999999988763   34444433                                     


Q ss_pred             --------------------------------CcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          201 --------------------------------ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       201 --------------------------------~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                                                      .+.+..++.++||.++||+++  +|    ..+.|..+.+.|.+.|.+.
T Consensus        98 ~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g----~~~~G~~~~~~l~~~i~~~  171 (175)
T 3gyk_A           98 ANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--ED----ALVPGFVEQSQLQDAVDRA  171 (175)
T ss_dssp             CSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT----EEECSCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CC----EEeeCCCCHHHHHHHHHHH
Confidence                                            123345788999999999887  44    3567999999999998765


Q ss_pred             c
Q 018270          249 C  249 (358)
Q Consensus       249 ~  249 (358)
                      .
T Consensus       172 l  172 (175)
T 3gyk_A          172 R  172 (175)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.78  E-value=1.5e-08  Score=85.54  Aligned_cols=81  Identities=22%  Similarity=0.503  Sum_probs=61.3

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-------------------------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-------------------------------------   81 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-------------------------------------   81 (358)
                      +++++++.||++|||+|+.+.|.+.++.+.     .+.+..+.                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~  159 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA  159 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCC
Confidence            467899999999999999999999988752     23333221                                     


Q ss_pred             ---C----ccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           82 ---C----DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        82 ---~----~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                         |    +++.++++++||.++|+++ +.+|    ..+.|..+.+++.++|...
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gtPt~v-~~dG----~~~~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          160 PASCDVDIADHYALGVQLGVSGTPAVV-LSNG----TLVPGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEEE-CTTS----CEEESCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccCEEE-EcCC----eEecCCCCHHHHHHHHHHh
Confidence               1    2345688999999999994 4444    3567989999999998764

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.78  E-value=4.4e-08  Score=79.42  Aligned_cols=93  Identities=17%  Similarity=0.260  Sum_probs=69.4

Q ss_pred             CCCcEEEEEcCCCCc-ccchhhhhHHHHHHHhcCCC-CeEEEEEeCcc---c-------------------------HHH
Q 018270          158 KSKDVLVEFYAPWCG-HCKNLAPTYEKVAAAFTLED-DVVVANLDADK---Y-------------------------KDL  207 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~-~c~~~~~~~~~la~~~~~~~-~v~~~~vd~~~---~-------------------------~~l  207 (358)
                      .+++++|.||++||+ +|....|.+.++.+.+...+ ++.++.|+++.   .                         ..+
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            578999999999999 99999999999999986443 47777777651   1                         122


Q ss_pred             HHh----------------cCCCcccEEEEEeCCCcceeeecCCC--CHHHHHHHHHHhcC
Q 018270          208 AEK----------------YGVSGFPTLKFFPKGNKDGEEYGGGR--DLEDFVSFINEKCG  250 (358)
Q Consensus       208 ~~~----------------~~v~~~Pti~~~~~g~~~~~~~~g~~--~~~~l~~~i~~~~~  250 (358)
                      .+.                |++...|+++++...++....+.|..  +.+++.+.|++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence            222                23566888888877777777777765  58899999887653

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.78  E-value=1.6e-08  Score=83.69  Aligned_cols=91  Identities=19%  Similarity=0.263  Sum_probs=71.7

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .+++++|.|| ++||++|+...|.+.++++.|.. .++.++.|+.+.                            +..++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  108 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE-RNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  108 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHH
Confidence            5789999999 99999999999999999999863 357777776652                            24688


Q ss_pred             HhcCCC-----cccEEEEEeCCCcceeeecCC----CCHHHHHHHHHHhc
Q 018270          209 EKYGVS-----GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  249 (358)
Q Consensus       209 ~~~~v~-----~~Pti~~~~~g~~~~~~~~g~----~~~~~l~~~i~~~~  249 (358)
                      +.||+.     .+|+++++..+++....+.|.    ++.+++.+.|....
T Consensus       109 ~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          109 RSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            999999     899999997776655555553    45778888877654

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.78  E-value=1.6e-09  Score=90.02  Aligned_cols=44  Identities=16%  Similarity=0.454  Sum_probs=38.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhH---HHHHHHhcCCCCeEEEEEeCcc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK  203 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~---~~la~~~~~~~~v~~~~vd~~~  203 (358)
                      .+++++|.||+.||+||+.+.|.+   +++++.+.  +++.|.+++++.
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~--~~v~~~~~~v~~  158 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP--EGVKMTKYHVNF  158 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC--TTCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCC--CCCEEEEeccCc
Confidence            357899999999999999999999   99999885  478888888764

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.78  E-value=2.1e-08  Score=84.93  Aligned_cols=91  Identities=18%  Similarity=0.232  Sum_probs=72.6

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .+++++|.|| ++||++|+...|.+.++++.|.. .++.++.|+++.                            ...++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~  133 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD-VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS  133 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHH
Confidence            4689999999 99999999999999999999963 357777776652                            24688


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeeecCC----CCHHHHHHHHHHhc
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  249 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g~----~~~~~l~~~i~~~~  249 (358)
                      +.|++.      .+|+++++.+.+.....+.|.    ++.+++.+.|+...
T Consensus       134 ~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          134 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            999998      999999997766655554443    67788988887754

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.78  E-value=2.5e-08  Score=81.17  Aligned_cols=82  Identities=20%  Similarity=0.285  Sum_probs=64.5

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC------------------------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC------------------------------------   82 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~------------------------------------   82 (358)
                      .++++++.|+.+|||+|+.+.|.+.++.+.+.   ++.+...+.                                    
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~---~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~   97 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP---NVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGK   97 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCC---CEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Confidence            46778999999999999999999999998763   355554442                                    


Q ss_pred             ---------------------------------ccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           83 ---------------------------------DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        83 ---------------------------------~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                                                       +.+..+++++||.++|++++  +|    ..+.|..+.+.+.+.|.+.
T Consensus        98 ~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g----~~~~G~~~~~~l~~~i~~~  171 (175)
T 3gyk_A           98 ANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--ED----ALVPGFVEQSQLQDAVDRA  171 (175)
T ss_dssp             CSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT----EEECSCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CC----EEeeCCCCHHHHHHHHHHH
Confidence                                             23345678899999999987  33    3567999999999998764

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.78  E-value=9.8e-09  Score=85.73  Aligned_cols=90  Identities=13%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.|| ++||++|....|.+.++.+++++ ..+.++.|+++.                            +.+++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~-~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  113 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD-IGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM  113 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHH
Confidence            4689999999 99999999999999999999974 358888887753                            34678


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccccC----CCCHHHHHHHHhcc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKYEG----PRSTEALAEYVNNE  129 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~~g----~~~~~~i~~~i~~~  129 (358)
                      +.|++.      .+|+++++++++.....+.|    .++.+++.+.|+..
T Consensus       114 ~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l  163 (202)
T 1uul_A          114 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  163 (202)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence            899999      99999999887765455444    35678888887754

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.77  E-value=2.6e-08  Score=82.99  Aligned_cols=92  Identities=16%  Similarity=0.126  Sum_probs=65.3

Q ss_pred             CCCcEEEEEcCCCCcc-cchhhhhHHHHHHHhcC--CCCeEEEEEeCcc----------------------------cHH
Q 018270          158 KSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTL--EDDVVVANLDADK----------------------------YKD  206 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~-c~~~~~~~~~la~~~~~--~~~v~~~~vd~~~----------------------------~~~  206 (358)
                      .+++++|.||++||++ |....|.+.++.+.+..  ..++.++.|+.+.                            ...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            5789999999999998 99999999998887753  1356666665541                            135


Q ss_pred             HHHhcCCC-ccc---------------EEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          207 LAEKYGVS-GFP---------------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       207 l~~~~~v~-~~P---------------ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +++.|||. +.|               +++++.+.++....+.|..+.+.+.+.|.+.+
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l  178 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV  178 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            77888887 344               66777666666667788777777777765543

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.77  E-value=9.9e-09  Score=72.76  Aligned_cols=74  Identities=24%  Similarity=0.260  Sum_probs=57.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch----hhHhhcC--ccCCCeEEEccCCCCCcccccCCC
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----SLCSKYG--VQGYPTIQWFPKGSLEPKKYEGPR  117 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~P~l~~~~~~~~~~~~~~g~~  117 (358)
                      ++.|+++||++|+.+.+.+++++..+   ..+.+..+|.++++    +++++++  +.++|++++  +|. .   ..|  
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~--~g~-~---i~~--   71 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNER---DDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ-H---IGG--   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHH---SSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE-E---EES--
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcC---CCceEEEEecccChHHHHHHHHHhCCCCceeCeEEE--CCE-E---EEC--
Confidence            67899999999999999999999876   34888999987664    7889999  999999843  442 2   222  


Q ss_pred             CHHHHHHHHhcc
Q 018270          118 STEALAEYVNNE  129 (358)
Q Consensus       118 ~~~~i~~~i~~~  129 (358)
                       .+++.+++++.
T Consensus        72 -~~~l~~~~~~~   82 (85)
T 1ego_A           72 -YTDFAAWVKEN   82 (85)
T ss_dssp             -SHHHHHHHHHH
T ss_pred             -HHHHHHHHHHh
Confidence             26788877653

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.75  E-value=1.4e-08  Score=85.88  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=71.8

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.|| ++||++|....|.+.++.+++++ ..+.++.|+++.                            +.+++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~  133 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD-VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS  133 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHH
Confidence            3589999999 99999999999999999999974 357788887753                            34678


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccccC----CCCHHHHHHHHhcc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKYEG----PRSTEALAEYVNNE  129 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~~g----~~~~~~i~~~i~~~  129 (358)
                      +.|++.      .+|+++++++++.....+.|    .++.+++.+.|+..
T Consensus       134 ~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l  183 (220)
T 1zye_A          134 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  183 (220)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            899999      99999999887765444444    35678888887754

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.75  E-value=5.4e-08  Score=78.43  Aligned_cols=88  Identities=18%  Similarity=0.175  Sum_probs=67.0

Q ss_pred             CCCcEEEEEcCCC-CcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-----------------------cHHHHHhcCC
Q 018270          158 KSKDVLVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~a~~-C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~v  213 (358)
                      .+++++|.||++| |++|+...|.+.++++.+   .++.++.|+.+.                       ...+++.|++
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v  119 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL---GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGV  119 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH---SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTC
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc---CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCC
Confidence            5789999999999 999999999999999998   346666665542                       2468889998


Q ss_pred             Cc------ccEEEEEeCCCcceeeecCC-----CCHHHHHHHHHHh
Q 018270          214 SG------FPTLKFFPKGNKDGEEYGGG-----RDLEDFVSFINEK  248 (358)
Q Consensus       214 ~~------~Pti~~~~~g~~~~~~~~g~-----~~~~~l~~~i~~~  248 (358)
                      ..      .|+.+++.+.++....+.|.     .+.+++.+.|++.
T Consensus       120 ~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          120 YIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             BBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             ccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence            86      49999998776666666542     3457777777654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.75  E-value=2.4e-08  Score=80.98  Aligned_cols=92  Identities=15%  Similarity=0.194  Sum_probs=69.6

Q ss_pred             CCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhhcCC-ceEEEEEeCcc---ch----hh---------------------
Q 018270           39 QDRGALVEFYAPWCG-HCKKLAPEYEKLGASFKKAK-SVLIGKVDCDE---HK----SL---------------------   88 (358)
Q Consensus        39 ~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~~~~-~v~~~~vd~~~---~~----~l---------------------   88 (358)
                      .+++++|.||++||+ +|....|.+.++.+.++..+ ++.++.|+++.   .+    .+                     
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            578999999999999 99999999999999987543 58888888762   11    11                     


Q ss_pred             Hhh----------------cCccCCCeEEEccCCCCCcccccCCC--CHHHHHHHHhccC
Q 018270           89 CSK----------------YGVQGYPTIQWFPKGSLEPKKYEGPR--STEALAEYVNNEG  130 (358)
Q Consensus        89 ~~~----------------~~i~~~P~l~~~~~~~~~~~~~~g~~--~~~~i~~~i~~~~  130 (358)
                      .+.                +++.+.|+++++++++.....+.|..  +.+++.+.|.+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll  171 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS  171 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence            122                23566888888888776666777765  4788888887654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.74  E-value=1.2e-08  Score=84.34  Aligned_cols=90  Identities=19%  Similarity=0.243  Sum_probs=71.1

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.|| ++||++|....|.+.++.+++++ ..+.++.|+.+.                            +.+++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  108 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE-RNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  108 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHH
Confidence            5689999999 99999999999999999999874 357777777753                            24678


Q ss_pred             hhcCcc-----CCCeEEEccCCCCCcccccCC----CCHHHHHHHHhcc
Q 018270           90 SKYGVQ-----GYPTIQWFPKGSLEPKKYEGP----RSTEALAEYVNNE  129 (358)
Q Consensus        90 ~~~~i~-----~~P~l~~~~~~~~~~~~~~g~----~~~~~i~~~i~~~  129 (358)
                      +.|++.     .+|+++++++++.....+.|.    ++.+++.+.|...
T Consensus       109 ~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A          109 RSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence            899999     899999998777654555442    4577888777653

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.74  E-value=2.6e-08  Score=83.81  Aligned_cols=91  Identities=18%  Similarity=0.250  Sum_probs=71.5

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .+++++|.|| ++||++|+...|.+.++++.|+. .++.++.|+.+.                            +..++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  129 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE-RNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSIS  129 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHH
Confidence            5689999999 99999999999999999999963 357777666543                            34688


Q ss_pred             HhcCCC-----cccEEEEEeCCCcceeeecCC----CCHHHHHHHHHHhc
Q 018270          209 EKYGVS-----GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  249 (358)
Q Consensus       209 ~~~~v~-----~~Pti~~~~~g~~~~~~~~g~----~~~~~l~~~i~~~~  249 (358)
                      +.||+.     .+|+.+++..++.....+.|.    ++.+++.+.|....
T Consensus       130 ~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          130 KDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            999998     899999998776655555443    56888888887653

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.73  E-value=2.3e-08  Score=83.32  Aligned_cols=91  Identities=12%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             CCCcEEEEEECCCChh-hhhhhHHHHHHHHHhhcC--CceEEEEEeCcc----------------------------chh
Q 018270           39 QDRGALVEFYAPWCGH-CKKLAPEYEKLGASFKKA--KSVLIGKVDCDE----------------------------HKS   87 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~-C~~~~~~~~~~~~~~~~~--~~v~~~~vd~~~----------------------------~~~   87 (358)
                      .+++++|.||++||++ |....|.+.++.+.+...  .++.++.|+++.                            ...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            5789999999999997 999999999998888642  357777777662                            134


Q ss_pred             hHhhcCcc-CCC---------------eEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           88 LCSKYGVQ-GYP---------------TIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        88 l~~~~~i~-~~P---------------~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +++.|||. +.|               +++++++++.....+.|..+.+.+.+.|...
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~  177 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEH  177 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence            67788886 344               7788888777766777777776666666553

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.73  E-value=2e-08  Score=84.52  Aligned_cols=90  Identities=16%  Similarity=0.218  Sum_probs=71.1

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.|| ++||++|....|.+.++++++++ ..+.++.|+.+.                            +.+++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  129 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE-RNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSIS  129 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHH
Confidence            5689999999 99999999999999999999974 357777777653                            34578


Q ss_pred             hhcCcc-----CCCeEEEccCCCCCcccccC----CCCHHHHHHHHhcc
Q 018270           90 SKYGVQ-----GYPTIQWFPKGSLEPKKYEG----PRSTEALAEYVNNE  129 (358)
Q Consensus        90 ~~~~i~-----~~P~l~~~~~~~~~~~~~~g----~~~~~~i~~~i~~~  129 (358)
                      +.|++.     .+|+++++++++.....+.|    .++.+++.+.|+..
T Consensus       130 ~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l  178 (213)
T 2i81_A          130 KDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI  178 (213)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            899999     89999999887765444433    24688888887653

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.71  E-value=3.9e-08  Score=82.64  Aligned_cols=82  Identities=22%  Similarity=0.323  Sum_probs=61.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe-------------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-------------------------------------  200 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd-------------------------------------  200 (358)
                      +++++++.|+++||++|+.+.|.+.++.+.   .-.+.+..+.                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            457899999999999999999999997652   1122222221                                     


Q ss_pred             -----CcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          201 -----ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       201 -----~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                           ++.+..+++++||+++||+++ .+|.    .+.|..+.+.|.++|.+
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~----~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFGVRGTPSIVT-STGE----LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC----CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE----EecCCCCHHHHHHHHHh
Confidence                 123457889999999999887 5553    46788999999999875

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.71  E-value=8.6e-08  Score=77.99  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=64.5

Q ss_pred             CCCcEEEEEcCCC-CcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------cHHHHHhcCCC
Q 018270          158 KSKDVLVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------YKDLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~-C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~v~  214 (358)
                      .+++++|.||++| |++|+...|.+.++.+.    .++.++.|+.+.                      ...+++.|++.
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~----~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  118 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA----SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVT  118 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH----TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCB
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh----cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCc
Confidence            4789999999999 99999999999999887    346666666651                      24688899998


Q ss_pred             cc---------cEEEEEeCCCcceeeecC--C---CCHHHHHHHHHHhcC
Q 018270          215 GF---------PTLKFFPKGNKDGEEYGG--G---RDLEDFVSFINEKCG  250 (358)
Q Consensus       215 ~~---------Pti~~~~~g~~~~~~~~g--~---~~~~~l~~~i~~~~~  250 (358)
                      ..         |+.+++.++++....+.|  .   .+.+++++.+.+..|
T Consensus       119 ~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~~~  168 (175)
T 1xvq_A          119 IADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSG  168 (175)
T ss_dssp             BCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHTC-
T ss_pred             ccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhhcC
Confidence            76         888888776665555542  2   245555555554443

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.70  E-value=5.7e-08  Score=82.32  Aligned_cols=89  Identities=16%  Similarity=0.278  Sum_probs=69.1

Q ss_pred             CCCcEEEEEcC-CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~a-~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .+++++|.||+ +||++|....|.+.++.+.|+. .++.++.|..+.                            ...++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  146 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNS-RNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEIS  146 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHH
Confidence            57899999996 9999999999999999999973 357777776663                            22578


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeeecCC----CCHHHHHHHHHH
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINE  247 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g~----~~~~~l~~~i~~  247 (358)
                      +.|++.      .+|+.+++...++....+.|.    ...+++.+.|..
T Consensus       147 ~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          147 KAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            899998      899999998777766655553    346677666654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.70  E-value=5.1e-08  Score=81.90  Aligned_cols=81  Identities=17%  Similarity=0.321  Sum_probs=61.1

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-------------------------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-------------------------------------   81 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd-------------------------------------   81 (358)
                      +++++++.|+.+|||+|+.+.|.+.++.+.     .+.+..+.                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~-----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~  159 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL-----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK  159 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCC
Confidence            467899999999999999999999987652     13332221                                     


Q ss_pred             ---C----ccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           82 ---C----DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        82 ---~----~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                         |    +++.++++++||+++|++++ .+|.    .+.|..+.+++.++|...
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~----~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          160 EVKTPNIVKKHYELGIQFGVRGTPSIVT-STGE----LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             SCCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC----CCCSCCCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE----EecCCCCHHHHHHHHHhc
Confidence               1    13456788999999999988 4442    567889999999998753

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.68  E-value=5.6e-08  Score=78.32  Aligned_cols=87  Identities=11%  Similarity=0.108  Sum_probs=65.6

Q ss_pred             CCCcEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-----------------------chhhHhhcCc
Q 018270           39 QDRGALVEFYAPW-CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-----------------------HKSLCSKYGV   94 (358)
Q Consensus        39 ~~~~~lv~fya~~-c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   94 (358)
                      .+++++|.||++| |++|+...|.+.++.+++   ..+.++.|+.+.                       +.++++.|++
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v  119 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL---GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGV  119 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH---SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTC
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc---CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCC
Confidence            4689999999999 999999999999999998   446777776652                       3456778888


Q ss_pred             cC------CCeEEEccCCCCCcccccCC-----CCHHHHHHHHhc
Q 018270           95 QG------YPTIQWFPKGSLEPKKYEGP-----RSTEALAEYVNN  128 (358)
Q Consensus        95 ~~------~P~l~~~~~~~~~~~~~~g~-----~~~~~i~~~i~~  128 (358)
                      ..      .|+.+++++++.....+.|.     .+.+++.+.+.+
T Consensus       120 ~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~  164 (167)
T 2jsy_A          120 YIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKA  164 (167)
T ss_dssp             BBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHH
T ss_pred             ccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHH
Confidence            76      49999998777665555432     245677776654

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.66  E-value=4.7e-08  Score=82.81  Aligned_cols=89  Identities=11%  Similarity=0.214  Sum_probs=69.8

Q ss_pred             CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.||+ +||++|....|.+.++.+++++ ..+.++.|+++.                            +..++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  146 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNS-RNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEIS  146 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHH
Confidence            57899999996 9999999999999999999974 347888787763                            23567


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccccCC----CCHHHHHHHHhc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKYEGP----RSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~~g~----~~~~~i~~~i~~  128 (358)
                      +.|++.      .+|+.+++++++.....+.|.    ...+++.+.+..
T Consensus       147 ~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          147 KAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            889998      899999998877665555443    356777777654

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.66  E-value=8e-08  Score=77.05  Aligned_cols=89  Identities=15%  Similarity=0.193  Sum_probs=66.6

Q ss_pred             CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------chhhHhhcCccC
Q 018270           39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQG   96 (358)
Q Consensus        39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~   96 (358)
                      .+++++|.||+ +||++|....|.+.++.+++++. .+.++.|.++.                     +.++++.|++..
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  112 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA-GAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIK  112 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcc
Confidence            46799999998 99999999999999999999753 46677676652                     235677888876


Q ss_pred             ------------CCeEEEccCCCCCcccccCCC---CHHHHHHHHhc
Q 018270           97 ------------YPTIQWFPKGSLEPKKYEGPR---STEALAEYVNN  128 (358)
Q Consensus        97 ------------~P~l~~~~~~~~~~~~~~g~~---~~~~i~~~i~~  128 (358)
                                  .|+.+++++++.....+.|..   ..+++.+.+++
T Consensus       113 ~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~  159 (163)
T 3gkn_A          113 EKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKA  159 (163)
T ss_dssp             EEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             ccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHH
Confidence                        899999988886655554433   34556666554

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.65  E-value=1.9e-07  Score=78.47  Aligned_cols=43  Identities=19%  Similarity=0.312  Sum_probs=37.0

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .+++++|.|||+||++|+ ..|.++++.+.|+. .++.++.|.++
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~-~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKP-YGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGG-GTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhcc-CCeEEEEEEcc
Confidence            678999999999999999 89999999999974 35888888754

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.63  E-value=1.9e-07  Score=71.08  Aligned_cols=96  Identities=15%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             CeEEc-ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           24 DVVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        24 ~v~~l-~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      .+..+ +.++++++++.+.+++|-|+++||++|   .+.|.++|+.+   +++.|+.++   +.++++++++. .|++++
T Consensus        22 ~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~---~d~~F~~t~---~~~v~~~~~v~-~~~vvl   91 (124)
T 2l4c_A           22 EPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF---PGVSFGIST---DSEVLTHYNIT-GNTICL   91 (124)
T ss_dssp             CCEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC---TTSEEEEEC---CHHHHHHTTCC-SSCEEE
T ss_pred             cceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC---CCceEEEEC---hHHHHHHcCCC-CCeEEE
Confidence            34445 567899999888999999999999988   78999999988   558898886   47799999998 899999


Q ss_pred             ccCCCCCcccccC----CCCHHHHHHHHhcc
Q 018270          103 FPKGSLEPKKYEG----PRSTEALAEYVNNE  129 (358)
Q Consensus       103 ~~~~~~~~~~~~g----~~~~~~i~~~i~~~  129 (358)
                      |++.......|.|    ..+.+.|.+||...
T Consensus        92 fkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           92 FRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             EETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            9986545567876    78999999999764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.59  E-value=6.8e-08  Score=78.59  Aligned_cols=87  Identities=14%  Similarity=0.103  Sum_probs=63.8

Q ss_pred             CCCcEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------chhhHhhcCcc
Q 018270           39 QDRGALVEFYAPW-CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------HKSLCSKYGVQ   95 (358)
Q Consensus        39 ~~~~~lv~fya~~-c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~   95 (358)
                      .+++++|.||+.| |++|....|.+.++.++    ..+.++.|+.+.                      +..+++.|++.
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~----~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  118 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA----SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVT  118 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH----TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCB
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh----cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCc
Confidence            4689999999999 99999999999999887    346777776651                      34678889998


Q ss_pred             CC---------CeEEEccCCCCCcccccC--C---CCHHHHHHHHhcc
Q 018270           96 GY---------PTIQWFPKGSLEPKKYEG--P---RSTEALAEYVNNE  129 (358)
Q Consensus        96 ~~---------P~l~~~~~~~~~~~~~~g--~---~~~~~i~~~i~~~  129 (358)
                      ..         |+.+++++++.....+.|  .   .+.+++.+.+.+.
T Consensus       119 ~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~  166 (175)
T 1xvq_A          119 IADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGAT  166 (175)
T ss_dssp             BCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHT
T ss_pred             ccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhh
Confidence            77         899998877766555532  2   2445555555443

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.57  E-value=2.5e-07  Score=74.11  Aligned_cols=89  Identities=7%  Similarity=0.102  Sum_probs=66.3

Q ss_pred             CCCcEEEEEcC-CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------cHHHHHhcCCCc
Q 018270          158 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVSG  215 (358)
Q Consensus       158 ~~~~v~v~f~a-~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~v~~  215 (358)
                      .+++++|.||+ +||++|....|.+.++.+.|+.. ++.++.|..+.                     ...+++.||+..
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  112 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA-GAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIK  112 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcc
Confidence            46799999998 99999999999999999999643 46666666652                     226788888876


Q ss_pred             ------------ccEEEEEeCCCcceeeecCC---CCHHHHHHHHHH
Q 018270          216 ------------FPTLKFFPKGNKDGEEYGGG---RDLEDFVSFINE  247 (358)
Q Consensus       216 ------------~Pti~~~~~g~~~~~~~~g~---~~~~~l~~~i~~  247 (358)
                                  .|+.+++...+.....+.+.   ...+++.+.|++
T Consensus       113 ~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~  159 (163)
T 3gkn_A          113 EKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKA  159 (163)
T ss_dssp             EEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             ccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHH
Confidence                        89999998777665556443   334566666654

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.54  E-value=2.1e-07  Score=74.28  Aligned_cols=83  Identities=12%  Similarity=0.067  Sum_probs=57.9

Q ss_pred             HHHhcCCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------cchhhHhh
Q 018270           34 EKEVGQDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------EHKSLCSK   91 (358)
Q Consensus        34 ~~~~~~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------~~~~l~~~   91 (358)
                      .+...++++++|.|| +.||++|....|.+.++.+++++.+  .++.|.++                     .+.++++.
T Consensus        29 ~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  106 (159)
T 2a4v_A           29 KKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA--AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGL  106 (159)
T ss_dssp             HHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC--EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHH
T ss_pred             HHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence            333333457889987 8999999999999999999997644  55555543                     23457788


Q ss_pred             cCccCCC------eEEEccCCCCCcccccCCCCH
Q 018270           92 YGVQGYP------TIQWFPKGSLEPKKYEGPRST  119 (358)
Q Consensus        92 ~~i~~~P------~l~~~~~~~~~~~~~~g~~~~  119 (358)
                      |++...|      +.+++ +++.....+.|....
T Consensus       107 ~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~~  139 (159)
T 2a4v_A          107 LGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPE  139 (159)
T ss_dssp             HTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHH
T ss_pred             hCCcccccCCccceEEEE-cCCEEEEEEccCCcc
Confidence            9999888      55555 555454566665443

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.52  E-value=3e-07  Score=78.81  Aligned_cols=87  Identities=17%  Similarity=0.251  Sum_probs=64.5

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC------------------------------------
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC------------------------------------   82 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~------------------------------------   82 (358)
                      +.+.+++.|+.+|||+|+++.+.+.++.+.    ++|.+..++.                                    
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l  171 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  171 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC----CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Confidence            345689999999999999999999887764    3455543332                                    


Q ss_pred             --------------ccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           83 --------------DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        83 --------------~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                                    +++.++++++||.++|++++.+.++.. ....|..+.+.+.++|....
T Consensus       172 ~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          172 NVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC--
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHH
Confidence                          123456789999999999998654432 46789999999999998653

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.52  E-value=2e-07  Score=64.08  Aligned_cols=68  Identities=13%  Similarity=0.286  Sum_probs=50.2

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHH---hcCCCcccEEEEEeCCCcceeeecCCCCHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  239 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~---~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~  239 (358)
                      ++.|+++||++|+...+.++++        ++.+..+|++.++++.+   ++++.++|+++.  +| .   . .++.+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g-~---~-~~g~~~~   67 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DG-E---H-WSGFRPE   67 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TT-E---E-EESCCHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CC-e---E-EcCCCHH
Confidence            6789999999999999988865        24456677776655554   899999999873  44 2   1 2446788


Q ss_pred             HHHHHH
Q 018270          240 DFVSFI  245 (358)
Q Consensus       240 ~l~~~i  245 (358)
                      .+.+++
T Consensus        68 ~l~~~l   73 (75)
T 1r7h_A           68 RIKQLQ   73 (75)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888776

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.52  E-value=1.4e-07  Score=80.92  Aligned_cols=88  Identities=17%  Similarity=0.274  Sum_probs=64.1

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC------------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA------------------------------------  201 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~------------------------------------  201 (358)
                      +.+.+++.|+.+||++|+.+.|.+.++.+.    +++.+..+..                                    
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l  171 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  171 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC----CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Confidence            346689999999999999999998887663    2455443322                                    


Q ss_pred             --------------cccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          202 --------------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       202 --------------~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                                    +.+..+++++||+++||+++...++. .....|..+.+.|.++|.+...
T Consensus       172 ~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~-~~~~~G~~~~~~L~~~l~~~~~  233 (241)
T 1v58_A          172 NVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIMGNKLQ  233 (241)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHTTC---
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHHHHHHH
Confidence                          12346788999999999999874333 3467899999999999876543

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.51  E-value=6.2e-07  Score=74.90  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=36.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .+++++|.||++||++| ...|.+.++.+.|+.. ++.++.|.++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~-g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPF-GLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC-CEEEEEEECc
Confidence            57899999999999999 6789999999999743 5888877654

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.51  E-value=3.6e-07  Score=77.19  Aligned_cols=91  Identities=19%  Similarity=0.277  Sum_probs=67.5

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----------------------------HHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----------------------------KDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------------------------~~l~  208 (358)
                      .+++++|.|| ++||++|....|.+.++.+.|+. .++.++.|..+..                            ..++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  133 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN-KNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDIS  133 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHH
Confidence            5789999999 99999999999999999998863 3566666655421                            2466


Q ss_pred             HhcCC-----CcccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHhc
Q 018270          209 EKYGV-----SGFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKC  249 (358)
Q Consensus       209 ~~~~v-----~~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~~  249 (358)
                      +.|++     ...|+.+++...++....+.|    ..+.+++.+.|....
T Consensus       134 ~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          134 KNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            77887     368999999877665555544    356788888877643

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.51  E-value=5.9e-08  Score=68.00  Aligned_cols=69  Identities=13%  Similarity=0.177  Sum_probs=49.0

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHH---hcCCCcccEEEEEeCCCcceeeecCCCCHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  239 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~---~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~  239 (358)
                      ++.|+++||++|+.+.+.+++.        ++.+..+|++.++++.+   ++|+.++|+++  .+| . .   .++.+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g-~-~---~~g~~~~   67 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGD-L-S---WSGFRPD   67 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETT-E-E---EESCCHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECC-E-E---EecCCHH
Confidence            6789999999999999988864        24456677776654443   58999999983  344 2 1   2346677


Q ss_pred             HHHHHHH
Q 018270          240 DFVSFIN  246 (358)
Q Consensus       240 ~l~~~i~  246 (358)
                      .+.+++.
T Consensus        68 ~l~~~l~   74 (81)
T 1h75_A           68 MINRLHP   74 (81)
T ss_dssp             HHGGGSC
T ss_pred             HHHHHHh
Confidence            7777664

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.49  E-value=2.2e-07  Score=74.10  Aligned_cols=89  Identities=20%  Similarity=0.331  Sum_probs=56.0

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---------------------HHHHHhcCCC-
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVS-  214 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~v~-  214 (358)
                      .++++++.|| ++||++|....|.+.++.+++.. .++.++.|..+..                     .++++.|||. 
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~  107 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQ-VNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAW  107 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGG-CSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccc-cCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCcc
Confidence            5788999998 99999999999999999988864 3566666665532                     2566677763 


Q ss_pred             ----------cccEEEEEeCCCcceeee-----cCCCCHHHHHHHHHH
Q 018270          215 ----------GFPTLKFFPKGNKDGEEY-----GGGRDLEDFVSFINE  247 (358)
Q Consensus       215 ----------~~Pti~~~~~g~~~~~~~-----~g~~~~~~l~~~i~~  247 (358)
                                ..|+.+++...++....+     .+..+.+++.+.|+.
T Consensus       108 ~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  155 (157)
T 4g2e_A          108 EFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS  155 (157)
T ss_dssp             ECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHH
T ss_pred             ccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence                      356777776655543333     234567777777654

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.49  E-value=7.2e-07  Score=71.13  Aligned_cols=76  Identities=16%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             CCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------cHHHHHhcCCCcc
Q 018270          159 SKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVSGF  216 (358)
Q Consensus       159 ~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~v~~~  216 (358)
                      ++++++.|| +.||++|....|.+.++.+.++..+  .++.|..+.                     +..+++.||+...
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  112 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA--AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKT  112 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC--EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            347888887 9999999999999999999997544  444444432                     2367888999888


Q ss_pred             c------EEEEEeCCCcceeeecCCCC
Q 018270          217 P------TLKFFPKGNKDGEEYGGGRD  237 (358)
Q Consensus       217 P------ti~~~~~g~~~~~~~~g~~~  237 (358)
                      |      +.+++++| +....+.|...
T Consensus       113 p~~g~~~~~~li~~G-~i~~~~~g~~~  138 (159)
T 2a4v_A          113 PLSGSIRSHFIFVDG-KLKFKRVKISP  138 (159)
T ss_dssp             SSSCBCCEEEEEETT-EEEEEEESCCH
T ss_pred             ccCCccceEEEEcCC-EEEEEEccCCc
Confidence            8      44444544 55555666543

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.48  E-value=5.5e-07  Score=75.62  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=37.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .+++++|.|||+||++|+ ..|.+.++.+++++. .+.++.|.|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~-g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPY-GLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC-CeEEEEEEcc
Confidence            578999999999999999 899999999999753 4888888764

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.46  E-value=7.1e-07  Score=74.86  Aligned_cols=91  Identities=13%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----------------------------HHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----------------------------KDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------------------------~~l~  208 (358)
                      .+++++|.|| ++||++|....|.+.++.+.|+. .++.++.|..+..                            ..++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  125 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS-INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS  125 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHH
Confidence            5689999999 99999999999999999999864 3566666655421                            2567


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeeecCC----CCHHHHHHHHHHhc
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  249 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g~----~~~~~l~~~i~~~~  249 (358)
                      +.||+.      ..|+.+++.+.++....+.|.    ++.+++.+.|....
T Consensus       126 ~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          126 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            778884      589999998777655555443    57788888877653

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.45  E-value=7.5e-07  Score=73.15  Aligned_cols=91  Identities=11%  Similarity=-0.017  Sum_probs=66.9

Q ss_pred             CCCcEEEEEcC-CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-------------------------HHHHHhc
Q 018270          158 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------------KDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~a-~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~  211 (358)
                      .+++++|.||+ +||++|....|.+.++.+.|+. .++.++.|..+..                         ..+++.|
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~y  107 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQK-LGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH-TTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHh
Confidence            46899999995 9999999999999999999863 3566666665421                         1456667


Q ss_pred             CCC------cccEEEEEeCCCcceeeecCC----CCHHHHHHHHHHhc
Q 018270          212 GVS------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  249 (358)
Q Consensus       212 ~v~------~~Pti~~~~~g~~~~~~~~g~----~~~~~l~~~i~~~~  249 (358)
                      |+.      ..|+.+++...+.....+.|.    ++.+++.+.|+...
T Consensus       108 gv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            775      269999998776655555553    36788888877654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.45  E-value=1.3e-07  Score=66.27  Aligned_cols=71  Identities=8%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHh---hcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCS---KYGVQGYPTIQWFPKGSLEPKKYEGPRSTE  120 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~  120 (358)
                      ++.|+++||++|+.+.+.+++.        .+.+..+|.++++++.+   ++++.++|+++  .+|.    .. |+.+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~----~~-~g~~~~   67 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDL----SW-SGFRPD   67 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTE----EE-ESCCHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCE----EE-ecCCHH
Confidence            6789999999999999988752        25567788887765543   58999999984  2432    12 345677


Q ss_pred             HHHHHHhcc
Q 018270          121 ALAEYVNNE  129 (358)
Q Consensus       121 ~i~~~i~~~  129 (358)
                      .+.+++.+.
T Consensus        68 ~l~~~l~~~   76 (81)
T 1h75_A           68 MINRLHPAP   76 (81)
T ss_dssp             HHGGGSCCC
T ss_pred             HHHHHHhcc
Confidence            777777654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.45  E-value=2.5e-07  Score=74.33  Aligned_cols=97  Identities=13%  Similarity=0.237  Sum_probs=65.9

Q ss_pred             HHHHHhcCCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---------------------HHHH
Q 018270          151 FDEIVLDKSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLA  208 (358)
Q Consensus       151 f~~~~~~~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------~~l~  208 (358)
                      +.++. .+++++++.|| ++||++|....|.+.++.+.|+. .++.++.|..+..                     .+++
T Consensus        26 Lsd~~-~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~  103 (164)
T 4gqc_A           26 LYEVL-KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK-ANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVI  103 (164)
T ss_dssp             HHHHH-HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGG-SSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHH
T ss_pred             HHHHh-cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhc-cCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHH
Confidence            44444 46788888888 99999999999999999988864 3566666665532                     2567


Q ss_pred             HhcCCC----------cccEEEEEeCCCcceeeec-----CCCCHHHHHHHHHHhc
Q 018270          209 EKYGVS----------GFPTLKFFPKGNKDGEEYG-----GGRDLEDFVSFINEKC  249 (358)
Q Consensus       209 ~~~~v~----------~~Pti~~~~~g~~~~~~~~-----g~~~~~~l~~~i~~~~  249 (358)
                      +.|||.          ..|+.+++...++....+.     +..+.+++++.+++..
T Consensus       104 ~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  159 (164)
T 4gqc_A          104 KLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  159 (164)
T ss_dssp             HHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            777773          2577777776665443332     2346677777766543

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.44  E-value=3.5e-07  Score=62.81  Aligned_cols=69  Identities=13%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHh---hcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCS---KYGVQGYPTIQWFPKGSLEPKKYEGPRSTE  120 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~  120 (358)
                      ++.|+++||++|+...+.+++.        .+.+..+|.+.+++..+   ++++.++|++++  +|.    .. ++.+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~----~~-~g~~~~   67 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE----HW-SGFRPE   67 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE----EE-ESCCHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCe----EE-cCCCHH
Confidence            5789999999999999988754        25566788887766555   899999999984  332    23 345788


Q ss_pred             HHHHHHh
Q 018270          121 ALAEYVN  127 (358)
Q Consensus       121 ~i~~~i~  127 (358)
                      .+.+++.
T Consensus        68 ~l~~~l~   74 (75)
T 1r7h_A           68 RIKQLQA   74 (75)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            8888774

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.44  E-value=1.1e-06  Score=71.00  Aligned_cols=96  Identities=15%  Similarity=0.151  Sum_probs=70.5

Q ss_pred             CCCcEEEEEcCCCCc-ccchhhhhHHHHHHHhcCC-CCeEEEEEeCc-------------------------------cc
Q 018270          158 KSKDVLVEFYAPWCG-HCKNLAPTYEKVAAAFTLE-DDVVVANLDAD-------------------------------KY  204 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~-~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~-------------------------------~~  204 (358)
                      .+++++|.||++||+ .|....|.+.++.+.+... .++.++.|.++                               ..
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            478999999999997 6999999999999998532 34666555543                               11


Q ss_pred             HHHHHhcCC---------CcccEEEEEeCCCcceeeecCC-CCHHHHHHHHHHhcCCCC
Q 018270          205 KDLAEKYGV---------SGFPTLKFFPKGNKDGEEYGGG-RDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       205 ~~l~~~~~v---------~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~~~i~~~~~~~~  253 (358)
                      ..+++.||+         ...|+++++.+.++....|.|. .+.+++.+.|.+..+.+.
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~~~  165 (170)
T 3me7_A          107 FKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGEGH  165 (170)
T ss_dssp             HHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhcccc
Confidence            246666554         3457888888777655566664 789999999998876554

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.44  E-value=3.4e-07  Score=77.36  Aligned_cols=90  Identities=16%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.|| ++||++|....|.+.++.+++++ ..+.++.|..+.                            +.+++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  133 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN-KNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDIS  133 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHH
Confidence            5689999999 99999999999999999999864 346677666543                            12356


Q ss_pred             hhcCc-----cCCCeEEEccCCCCCcccccC----CCCHHHHHHHHhcc
Q 018270           90 SKYGV-----QGYPTIQWFPKGSLEPKKYEG----PRSTEALAEYVNNE  129 (358)
Q Consensus        90 ~~~~i-----~~~P~l~~~~~~~~~~~~~~g----~~~~~~i~~~i~~~  129 (358)
                      +.|++     ...|+.+++++++.....+.|    ..+.+++.+.|+..
T Consensus       134 ~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          134 KNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            67777     367999999877765444433    35678888777654

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.43  E-value=5.4e-07  Score=74.33  Aligned_cols=86  Identities=29%  Similarity=0.373  Sum_probs=63.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------------  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------------------  202 (358)
                      .++++++.|+.+||++|+.+.|.+.++.+.+..  ++.+..+...                                   
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~  101 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKE  101 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            567899999999999999999999999998853  5666654431                                   


Q ss_pred             --------------------------------------ccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHH
Q 018270          203 --------------------------------------KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF  244 (358)
Q Consensus       203 --------------------------------------~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~  244 (358)
                                                            .+..++.++||.++||+++  +| +......|..+.+.|.+.
T Consensus       102 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng-~~~~~~~G~~~~e~l~~~  178 (192)
T 3h93_A          102 HKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NG-KYRFDIGSAGGPEETLKL  178 (192)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT-TEEEEHHHHTSHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CC-EEEecccccCCHHHHHHH
Confidence                                                  0114567889999999887  44 333344477788888877


Q ss_pred             HHHh
Q 018270          245 INEK  248 (358)
Q Consensus       245 i~~~  248 (358)
                      |...
T Consensus       179 i~~l  182 (192)
T 3h93_A          179 ADYL  182 (192)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.43  E-value=5e-07  Score=74.57  Aligned_cols=41  Identities=17%  Similarity=0.317  Sum_probs=34.3

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD   81 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd   81 (358)
                      .++++++.|+.+|||+|+.+.|.+.++.+.+.+  +|.+..+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p   64 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLP   64 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEE
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEe
Confidence            567899999999999999999999999998863  56665443

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.41  E-value=1.4e-06  Score=71.92  Aligned_cols=44  Identities=25%  Similarity=0.506  Sum_probs=37.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      .+++++|+|+.+|||||+.+.|.+.++.+.+.  +++.|..++..-
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~--~~v~~~~~p~~~   66 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFK--DDMYLRTEHVVW   66 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCC--TTEEEEEEECCC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCC--CCeEEEEecCCC
Confidence            35779999999999999999999999998886  368888887753

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.41  E-value=1.5e-06  Score=70.89  Aligned_cols=89  Identities=10%  Similarity=0.094  Sum_probs=63.5

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---------------------HHHHHhcCCCc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVSG  215 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~v~~  215 (358)
                      .+++++|.|| +.||++|....|.+.++.+.|+. .++.++.|..+..                     ..+++.|++..
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~-~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~  128 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQ-INATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIK  128 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcc
Confidence            4678888888 99999999999999999999974 3566776666532                     25777788753


Q ss_pred             ------------ccEEEEEeCCCcceeeecCC---CCHHHHHHHHHH
Q 018270          216 ------------FPTLKFFPKGNKDGEEYGGG---RDLEDFVSFINE  247 (358)
Q Consensus       216 ------------~Pti~~~~~g~~~~~~~~g~---~~~~~l~~~i~~  247 (358)
                                  .|+.+++.+.++....+.+.   ...+++.+.|++
T Consensus       129 ~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~  175 (179)
T 3ixr_A          129 EKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKA  175 (179)
T ss_dssp             EECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             cccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                        58888887766655555442   344555555544

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.41  E-value=4e-07  Score=75.32  Aligned_cols=43  Identities=30%  Similarity=0.479  Sum_probs=37.0

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      +++++++.|+++||++|+.+.|.+.++.+.+..  ++.+..++..
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecc
Confidence            567899999999999999999999999998853  6777777764

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.40  E-value=1.1e-06  Score=73.27  Aligned_cols=43  Identities=16%  Similarity=0.156  Sum_probs=36.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .+++++|.||++||++| ...|.+.++.+++++. .+.++.|.++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~-g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPF-GLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC-CEEEEEEECc
Confidence            57899999999999999 6789999999999753 4888888764

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.39  E-value=3.8e-07  Score=67.29  Aligned_cols=65  Identities=18%  Similarity=0.233  Sum_probs=46.4

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-------hhhHhhcCccCCCeEEE
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------KSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~P~l~~  102 (358)
                      +.+++.++.++  ++.|+++||++|+.+.+.+.+....+.   .+.  .+|.+.+       ..+.+.+++.++|++++
T Consensus         3 ~~~~~~i~~~~--v~~f~~~~C~~C~~~~~~L~~~~~~~~---~~~--~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~   74 (105)
T 1kte_A            3 AFVNSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEG---LLE--FVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             HHHHHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTT---SEE--EEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             hHHHhhcccCC--EEEEEcCCCHhHHHHHHHHHHcCCCCC---ccE--EEEccCCCCHHHHHHHHHHHhCCCCcCeEEE
Confidence            45666665543  677999999999999999987654432   244  4555544       35788899999999843

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.39  E-value=6.9e-07  Score=76.58  Aligned_cols=91  Identities=13%  Similarity=0.099  Sum_probs=69.6

Q ss_pred             CCC-cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHHH
Q 018270          158 KSK-DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE  209 (358)
Q Consensus       158 ~~~-~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~~  209 (358)
                      .++ .+++.|+++||++|....+.+.+++++|+. .++.++.|++|.                           ...+++
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~-~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~  110 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR-LGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  110 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHH
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHh-CCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHH
Confidence            455 456788999999999999999999999963 357777777653                           235888


Q ss_pred             hcCCC-------cccEEEEEeCCCcceeeecCC----CCHHHHHHHHHHhc
Q 018270          210 KYGVS-------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  249 (358)
Q Consensus       210 ~~~v~-------~~Pti~~~~~g~~~~~~~~g~----~~~~~l~~~i~~~~  249 (358)
                      .||+.       ++|+++++.+.+.....+.|.    ++.+++...|....
T Consensus       111 ~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          111 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence            99997       899999998776644444333    68899998887653

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.39  E-value=6.2e-07  Score=73.84  Aligned_cols=43  Identities=19%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             CCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCcc
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      .++++|+|++.|||||+.+.|.+   .++.+.+.  ++|.|..++..-
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~   59 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLP--QGSRMVKYHVSL   59 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCC--TTCCEEEEECSS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCC--CCCEEEEEechh
Confidence            47899999999999999999987   68887776  467787777754

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.38  E-value=1.1e-06  Score=71.71  Aligned_cols=89  Identities=12%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------chhhHhhcCccC
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQG   96 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~   96 (358)
                      .+++++|.|| +.||++|....|.+.++.+++++. .+.++.|.++.                     +.++++.|++..
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~-~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~  128 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI-NATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIK  128 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcc
Confidence            4678889988 999999999999999999999753 46677776653                     234667777753


Q ss_pred             ------------CCeEEEccCCCCCcccccCC---CCHHHHHHHHhc
Q 018270           97 ------------YPTIQWFPKGSLEPKKYEGP---RSTEALAEYVNN  128 (358)
Q Consensus        97 ------------~P~l~~~~~~~~~~~~~~g~---~~~~~i~~~i~~  128 (358)
                                  .|+.+++++.+.....+.+.   ...+++.+.|+.
T Consensus       129 ~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~  175 (179)
T 3ixr_A          129 EKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKA  175 (179)
T ss_dssp             EECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             cccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                        58899998777654455442   334556555543

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.37  E-value=5.2e-07  Score=77.36  Aligned_cols=95  Identities=12%  Similarity=0.111  Sum_probs=71.2

Q ss_pred             HHHhcCCCc-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------------c
Q 018270           34 EKEVGQDRG-ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------H   85 (358)
Q Consensus        34 ~~~~~~~~~-~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~   85 (358)
                      .+.+..++. +|+.|+++||++|....+.+.++.++|+. ..+.++.|+++.                           +
T Consensus        27 ~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~-~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~  105 (249)
T 3a2v_A           27 DHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR-LGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQ  105 (249)
T ss_dssp             HHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTT
T ss_pred             HHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHh-CCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCc
Confidence            444434564 56678999999999999999999999975 357888887753                           2


Q ss_pred             hhhHhhcCcc-------CCCeEEEccCCCCCcccccC----CCCHHHHHHHHhcc
Q 018270           86 KSLCSKYGVQ-------GYPTIQWFPKGSLEPKKYEG----PRSTEALAEYVNNE  129 (358)
Q Consensus        86 ~~l~~~~~i~-------~~P~l~~~~~~~~~~~~~~g----~~~~~~i~~~i~~~  129 (358)
                      .++++.||+.       .+|+++++++++.....+.|    .++.+++...|+..
T Consensus       106 ~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          106 GTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             SHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence            4578889987       89999999887755344333    35788888888753

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.36  E-value=1.9e-06  Score=73.64  Aligned_cols=90  Identities=14%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             CCCcEEEEEcC-CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----------------------------HHHH
Q 018270          158 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----------------------------KDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~a-~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------------------------~~l~  208 (358)
                      .+++++|.||+ .||++|....|.+.++++.|+. .++.++.|.++..                            ..++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~-~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~  154 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA-INTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQIS  154 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHH
Confidence            57899999999 9999999999999999999974 3566666665521                            2577


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHh
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK  248 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~  248 (358)
                      +.||+.      .+|+.+++.+.++....+.+    .++.+++.+.|...
T Consensus       155 ~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          155 KDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            888887      68999999877665544433    35677887777653

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.36  E-value=1.1e-06  Score=71.09  Aligned_cols=94  Identities=9%  Similarity=0.030  Sum_probs=69.2

Q ss_pred             CCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhhcC-CceEEEEEeCcc-------------------------------c
Q 018270           39 QDRGALVEFYAPWCG-HCKKLAPEYEKLGASFKKA-KSVLIGKVDCDE-------------------------------H   85 (358)
Q Consensus        39 ~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~-------------------------------~   85 (358)
                      .+++++|.||++||+ .|....+.+.++.+++... .++.++.|.++.                               .
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            378999999999997 6999999999999998632 346666665531                               1


Q ss_pred             hhhHhhcC---------ccCCCeEEEccCCCCCcccccCC-CCHHHHHHHHhccCCC
Q 018270           86 KSLCSKYG---------VQGYPTIQWFPKGSLEPKKYEGP-RSTEALAEYVNNEGGT  132 (358)
Q Consensus        86 ~~l~~~~~---------i~~~P~l~~~~~~~~~~~~~~g~-~~~~~i~~~i~~~~~~  132 (358)
                      .++++.||         +...|+++++++.+.....|.|. .+.+++.+.|.+....
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~  163 (170)
T 3me7_A          107 FKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGE  163 (170)
T ss_dssp             HHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhcc
Confidence            23555555         34568889998888665566674 6789999998876553

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.35  E-value=1.3e-06  Score=72.18  Aligned_cols=44  Identities=23%  Similarity=0.454  Sum_probs=37.4

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      ..+++++|.||++|||+|+.+.|.+.++.+.+.  +++.+..++..
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~--~~v~~~~~~~~   66 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAP--QDVVLKQVPIA   66 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCC--TTEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCC--CCeEEEEEecc
Confidence            357889999999999999999999999999886  35777777664

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.35  E-value=1.1e-06  Score=72.11  Aligned_cols=90  Identities=12%  Similarity=0.070  Sum_probs=65.9

Q ss_pred             CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-------------------------hhhHhhc
Q 018270           39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------------------------KSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~   92 (358)
                      .+++++|.||+ .||++|....|.+.++.+++++ ..+.++.|..+..                         .++++.|
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~y  107 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQK-LGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH-TTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHh
Confidence            46899999995 9999999999999999999875 3577777766421                         2345566


Q ss_pred             Ccc------CCCeEEEccCCCCCcccccCC----CCHHHHHHHHhcc
Q 018270           93 GVQ------GYPTIQWFPKGSLEPKKYEGP----RSTEALAEYVNNE  129 (358)
Q Consensus        93 ~i~------~~P~l~~~~~~~~~~~~~~g~----~~~~~i~~~i~~~  129 (358)
                      ++.      ..|+.+++++++.....+.|.    ++.+++.+.|...
T Consensus       108 gv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l  154 (186)
T 1n8j_A          108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            765      369999998777665555443    3578888777654

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.35  E-value=2.3e-07  Score=74.02  Aligned_cols=89  Identities=16%  Similarity=0.292  Sum_probs=55.4

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------chhhHhhcCcc-
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQ-   95 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~-   95 (358)
                      .+++++|.|| ++||++|....|.+.++.++++.. .+.++.|+.+.                     +.++++.||+. 
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~-~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~  107 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV-NAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAW  107 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGC-SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhccccccccccc-CceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCcc
Confidence            4688999998 999999999999999998888753 46666666543                     23456666653 


Q ss_pred             ----------CCCeEEEccCCCCCcccc-----cCCCCHHHHHHHHhc
Q 018270           96 ----------GYPTIQWFPKGSLEPKKY-----EGPRSTEALAEYVNN  128 (358)
Q Consensus        96 ----------~~P~l~~~~~~~~~~~~~-----~g~~~~~~i~~~i~~  128 (358)
                                ..|+.+++++.+.....+     .+..+.+++.+.|+.
T Consensus       108 ~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  155 (157)
T 4g2e_A          108 EFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS  155 (157)
T ss_dssp             ECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHH
T ss_pred             ccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence                      356777777766542222     244567777777654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.33  E-value=2.9e-06  Score=67.93  Aligned_cols=86  Identities=13%  Similarity=0.136  Sum_probs=57.3

Q ss_pred             CCCcEEEEEcC-CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----------------------HHHHHhcCC
Q 018270          158 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~a-~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v  213 (358)
                      .+++++|.||+ .||++|....|.+.++.+.+   .++.++.|..+..                       ..+++.||+
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~---~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  117 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL---DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYAL  117 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC---TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc---CCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCC
Confidence            56889999995 99999999999999998887   3566666655421                       235555665


Q ss_pred             C----c--ccEEEEEeCCCcceeeecCC-----CCHHHHHHHHH
Q 018270          214 S----G--FPTLKFFPKGNKDGEEYGGG-----RDLEDFVSFIN  246 (358)
Q Consensus       214 ~----~--~Pti~~~~~g~~~~~~~~g~-----~~~~~l~~~i~  246 (358)
                      .    +  .|+.+++...++....+.|.     .+.+++.+.|+
T Consensus       118 ~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~  161 (163)
T 1psq_A          118 LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAK  161 (163)
T ss_dssp             BCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             ccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHH
Confidence            4    2  27777776655555555432     33456665554

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.33  E-value=1.1e-06  Score=73.76  Aligned_cols=90  Identities=12%  Similarity=0.138  Sum_probs=66.9

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----------------------------hhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----------------------------KSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~l~   89 (358)
                      .+++++|.|| ++||++|....|.+.++.++++. ..+.++.|.++..                            .+++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  125 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS-INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS  125 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHH
Confidence            4689999999 99999999999999999999874 3577776765421                            2356


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccccC----CCCHHHHHHHHhcc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKYEG----PRSTEALAEYVNNE  129 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~~g----~~~~~~i~~~i~~~  129 (358)
                      +.|++.      ..|+.+++++++.....+.|    .++.+++.+.|...
T Consensus       126 ~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          126 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            667774      58999999887765444433    24678888777653

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.31  E-value=2.3e-06  Score=69.12  Aligned_cols=42  Identities=14%  Similarity=0.177  Sum_probs=34.8

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .+++++|.|| +.||++|....|.+.++.+.+   .++.++.|..+
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~---~~v~vv~Is~d   88 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM---EGVDVTVVSMD   88 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC---TTEEEEEEESS
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc---CCceEEEEeCC
Confidence            4678999999 899999999999999998887   35666666654

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.30  E-value=4.5e-07  Score=66.88  Aligned_cols=55  Identities=16%  Similarity=0.268  Sum_probs=41.2

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----HHHHHhcCCCcccEE
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVSGFPTL  219 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~~Pti  219 (358)
                      .++.|+++||++|+.+.+.+.+++..+.   ++.++.++.+.+     ..+.+.+|+.++|++
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~---~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i   72 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEG---LLEFVDITATSDTNEIQDYLQQLTGARTVPRV   72 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTT---SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCC---ccEEEEccCCCCHHHHHHHHHHHhCCCCcCeE
Confidence            4677999999999999999998765542   355554444321     358889999999997

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.29  E-value=2.2e-06  Score=68.62  Aligned_cols=42  Identities=12%  Similarity=0.209  Sum_probs=34.8

Q ss_pred             CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .+++++|.||+ .||++|....|.+.++.+++   ..+.++.|+.+
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~---~~v~vv~is~d   83 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL---DNTVVLTVSMD   83 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC---TTEEEEEEESS
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc---CCcEEEEEECC
Confidence            46899999995 99999999999999998887   34666666654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.27  E-value=4.3e-06  Score=67.06  Aligned_cols=42  Identities=21%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .+++++|.|| +.||++|....|.+.++.+.+   .++.++.|..+
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~---~~v~vv~Is~d   84 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL---SNTIVLCISAD   84 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS---TTEEEEEEESS
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc---CCCEEEEEeCC
Confidence            5678999999 899999999999999999888   34555555544

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.27  E-value=2.5e-07  Score=74.35  Aligned_cols=96  Identities=15%  Similarity=0.199  Sum_probs=66.5

Q ss_pred             HHHHhcCCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc---------------------chhhHh
Q 018270           33 FEKEVGQDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCS   90 (358)
Q Consensus        33 f~~~~~~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~   90 (358)
                      +.+...+++++++.|| ++||++|....|.+.++.++++.. .+.++.|+.+.                     +.++++
T Consensus        26 Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~  104 (164)
T 4gqc_A           26 LYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIK  104 (164)
T ss_dssp             HHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS-SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHH
T ss_pred             HHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc-CceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHH
Confidence            4455567899999998 999999999999999998888753 46666666542                     234667


Q ss_pred             hcCcc----------CCCeEEEccCCCCCcccc-----cCCCCHHHHHHHHhcc
Q 018270           91 KYGVQ----------GYPTIQWFPKGSLEPKKY-----EGPRSTEALAEYVNNE  129 (358)
Q Consensus        91 ~~~i~----------~~P~l~~~~~~~~~~~~~-----~g~~~~~~i~~~i~~~  129 (358)
                      .||+.          ..|+.++.++++.....+     .+..+.+++.+.+++.
T Consensus       105 ~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l  158 (164)
T 4gqc_A          105 LYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI  158 (164)
T ss_dssp             HTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence            77763          367788887776543332     2334677777766654

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.27  E-value=2.2e-06  Score=69.15  Aligned_cols=43  Identities=14%  Similarity=0.137  Sum_probs=35.7

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      .+++++|.|| +.||++|....|.+.++.+++   ..+.++.|..+.
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~---~~v~vv~Is~d~   89 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM---EGVDVTVVSMDL   89 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC---TTEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc---CCceEEEEeCCC
Confidence            4678999999 899999999999999999887   446777676653

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.26  E-value=4e-06  Score=72.23  Aligned_cols=89  Identities=15%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----------------------------HHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----------------------------KDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------------------------~~l~  208 (358)
                      .++.++|.|| +.||++|....|.+.++++.|+. .++.++.|.++..                            ..++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~-~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va  168 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS-INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS  168 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH-cCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHH
Confidence            5688999999 99999999999999999999974 3566666665521                            2577


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHH
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINE  247 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~  247 (358)
                      +.||+.      .+|+.+++...+.....+.+    .++.+++...|..
T Consensus       169 ~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          169 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence            788875      47998888877665444433    3566777766654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.25  E-value=3e-06  Score=72.56  Aligned_cols=88  Identities=14%  Similarity=0.258  Sum_probs=62.2

Q ss_pred             CCCcEEEEEc-CCCCcccc-hhhhhHHHHHHHhcCCCCe-EEEEEeCccc----------------------HHHHHhcC
Q 018270          158 KSKDVLVEFY-APWCGHCK-NLAPTYEKVAAAFTLEDDV-VVANLDADKY----------------------KDLAEKYG  212 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~-~~~~~~~~la~~~~~~~~v-~~~~vd~~~~----------------------~~l~~~~~  212 (358)
                      .++++++.|| ++||++|. ...|.+.++++.|+. .++ .++.|..+..                      ..+++.||
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~-~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  110 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK-YGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMG  110 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH-TTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhC
Confidence            5778999998 99999999 999999999999863 346 5666655421                      25777888


Q ss_pred             CC-----------cccEEEEEeCCCcceeeecCC---------CCHHHHHHHHHH
Q 018270          213 VS-----------GFPTLKFFPKGNKDGEEYGGG---------RDLEDFVSFINE  247 (358)
Q Consensus       213 v~-----------~~Pti~~~~~g~~~~~~~~g~---------~~~~~l~~~i~~  247 (358)
                      +.           ..|+.++++ ++.....+.|.         .+.+++.+.+..
T Consensus       111 v~~~~~~~g~~~~~~p~t~li~-~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~  164 (241)
T 1nm3_A          111 MLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP  164 (241)
T ss_dssp             CEEECTTTTCCEEECCEEEEEE-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred             ceeecccccCcccceeEEEEEE-CCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence            75           347777774 44544444443         467777777754

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.25  E-value=2.5e-06  Score=72.94  Aligned_cols=89  Identities=12%  Similarity=0.169  Sum_probs=67.5

Q ss_pred             CCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----------------------------hhhH
Q 018270           39 QDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----------------------------KSLC   89 (358)
Q Consensus        39 ~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~l~   89 (358)
                      .+++++|.||+ .||++|....|.+.++.+++++. .+.++.|.++..                            .+++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~-gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~  154 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI-NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQIS  154 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHH
Confidence            46899999999 99999999999999999999753 477776766531                            2466


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccccC----CCCHHHHHHHHhc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKYEG----PRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~~g----~~~~~~i~~~i~~  128 (358)
                      +.||+.      .+|+++++++++.....+.+    .++.+++.+.|..
T Consensus       155 ~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~  203 (240)
T 3qpm_A          155 KDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQA  203 (240)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            778887      68999999887765444332    4567788877765

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.24  E-value=8.1e-06  Score=70.34  Aligned_cols=100  Identities=17%  Similarity=0.277  Sum_probs=78.5

Q ss_pred             ceEcC-cccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          143 VVVLT-ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       143 v~~l~-~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      +.+++ .+.+++++ ..+..++|.|+++|   |....+.|.++|..++  +++.|+.+   .+.+++++|++++ |++++
T Consensus         8 v~~l~s~~~~~~~l-~~~~v~vvgff~~~---~~~~~~~f~~~A~~lr--~~~~F~~~---~~~~v~~~~~~~~-p~i~~   77 (252)
T 2h8l_A            8 SVPLRTEEEFKKFI-SDKDASIVGFFDDS---FSEAHSEFLKAASNLR--DNYRFAHT---NVESLVNEYDDNG-EGIIL   77 (252)
T ss_dssp             EEECCSHHHHHHHH-TSSSCEEEEEESCT---TSHHHHHHHHHHHHTT--TTSCEEEE---CCHHHHHHHCSSS-EEEEE
T ss_pred             ceeecCHHHHHHHh-hcCCeEEEEEECCC---CChHHHHHHHHHHhcc--cCcEEEEE---ChHHHHHHhCCCC-CcEEE
Confidence            66674 56677777 66678899999987   5667889999999996  45677765   3577999999997 99999


Q ss_pred             EeCC------Ccceeee-cCCCCHHHHHHHHHHhcCCC
Q 018270          222 FPKG------NKDGEEY-GGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       222 ~~~g------~~~~~~~-~g~~~~~~l~~~i~~~~~~~  252 (358)
                      |+++      ......| .|..+.++|.+||+.++-+.
T Consensus        78 fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Pl  115 (252)
T 2h8l_A           78 FRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGI  115 (252)
T ss_dssp             ECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCS
T ss_pred             EcchhhcccccccccccCCCCcCHHHHHHHHHhcccCC
Confidence            9864      1256788 99999999999999986543

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.24  E-value=2.5e-05  Score=61.23  Aligned_cols=109  Identities=12%  Similarity=0.183  Sum_probs=80.6

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEE-EcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeC--cccHHHHHhcCCCc--
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVE-FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA--DKYKDLAEKYGVSG--  215 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~-f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~--~~~~~l~~~~~v~~--  215 (358)
                      ..|.++|.++..++. ..+.++.++ |..+.-..-..+.+.+.++|+.|+  +++.|+.+|.  +++..+++.||++.  
T Consensus        14 PLV~e~t~en~~~~~-~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fk--gki~Fv~vd~~~~~~~~~l~~fGl~~~~   90 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIF-GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK--GKILFAFIDSDHTDNQRILEFFGLKKEE   90 (147)
T ss_dssp             -CEEECCTTTHHHHH-SSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTT--TTCEEEEECTTCGGGHHHHHHTTCCGGG
T ss_pred             CeeEEeccccHHHHh-cCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcC--CceEEEEEecchHhHHHHHHHcCCCccc
Confidence            347889999998886 555555444 554333344567899999999996  5799999998  66667889999986  


Q ss_pred             ccEEEEEeC-CCcceeeec-CCCCHHHHHHHHHHhcCCC
Q 018270          216 FPTLKFFPK-GNKDGEEYG-GGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       216 ~Pti~~~~~-g~~~~~~~~-g~~~~~~l~~~i~~~~~~~  252 (358)
                      +|+++++.. +....+.+. +..+.+.|.+|+++.+...
T Consensus        91 ~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~Gk  129 (147)
T 3bj5_A           91 CPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK  129 (147)
T ss_dssp             CSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCC
Confidence            899999875 322223433 7899999999999987543

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.23  E-value=4e-06  Score=67.33  Aligned_cols=85  Identities=18%  Similarity=0.179  Sum_probs=57.2

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----------------------HHHHHhcCC
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v  213 (358)
                      .+++++|.|| +.||++|....|.+.++.+.    .++.++.|..+..                       ..+++.||+
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  120 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK----EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGV  120 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT----TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTC
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc----CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCC
Confidence            5688999998 78999999999999988765    3455555555421                       245566666


Q ss_pred             Cc------ccEEEEEeCCCcceeeec-----CCCCHHHHHHHHH
Q 018270          214 SG------FPTLKFFPKGNKDGEEYG-----GGRDLEDFVSFIN  246 (358)
Q Consensus       214 ~~------~Pti~~~~~g~~~~~~~~-----g~~~~~~l~~~i~  246 (358)
                      ..      .|+.+++...++....+.     +..+.+++.+.|+
T Consensus       121 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~  164 (166)
T 3p7x_A          121 VMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYK  164 (166)
T ss_dssp             EETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             ccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHh
Confidence            54      688888876665444322     2345666666664

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.20  E-value=3.5e-06  Score=67.65  Aligned_cols=85  Identities=12%  Similarity=0.101  Sum_probs=54.9

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-----------------------chhhHhhcCc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-----------------------HKSLCSKYGV   94 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   94 (358)
                      .+++++|.|| +.||++|....|.+.++.++    ..+.++.|..+.                       +.++++.|++
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  120 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK----EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGV  120 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT----TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTC
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc----CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCC
Confidence            4688999999 78999999999999988776    335555555542                       2244555665


Q ss_pred             cC------CCeEEEccCCCCCcccc-----cCCCCHHHHHHHHh
Q 018270           95 QG------YPTIQWFPKGSLEPKKY-----EGPRSTEALAEYVN  127 (358)
Q Consensus        95 ~~------~P~l~~~~~~~~~~~~~-----~g~~~~~~i~~~i~  127 (358)
                      ..      .|+.+++++++.....+     .+..+.+++.+.+.
T Consensus       121 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~  164 (166)
T 3p7x_A          121 VMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYK  164 (166)
T ss_dssp             EETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             ccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHh
Confidence            54      67777776666443332     22344556665554

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.20  E-value=1.6e-05  Score=62.37  Aligned_cols=111  Identities=15%  Similarity=0.254  Sum_probs=83.9

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC--ccchhhHhhcCccC--C
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYA-PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC--DEHKSLCSKYGVQG--Y   97 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya-~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~--~~~~~l~~~~~i~~--~   97 (358)
                      .-|.++|.+++..+..++.+..+.++. ..-..-..+.+.+.++|+.++  +++.|+.+|.  +........||+..  +
T Consensus        14 PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fk--gki~Fv~vd~~~~~~~~~l~~fGl~~~~~   91 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK--GKILFAFIDSDHTDNQRILEFFGLKKEEC   91 (147)
T ss_dssp             -CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTT--TTCEEEEECTTCGGGHHHHHHTTCCGGGC
T ss_pred             CeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcC--CceEEEEEecchHhHHHHHHHcCCCcccC
Confidence            458899999998888777776655444 333446678899999999998  6799999999  56666889999985  9


Q ss_pred             CeEEEccC-CCCCccccc-CCCCHHHHHHHHhccCCCCcc
Q 018270           98 PTIQWFPK-GSLEPKKYE-GPRSTEALAEYVNNEGGTNVK  135 (358)
Q Consensus        98 P~l~~~~~-~~~~~~~~~-g~~~~~~i~~~i~~~~~~~~~  135 (358)
                      |++.++.. +....+.+. +..+.+.|.+|+++....+..
T Consensus        92 P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~  131 (147)
T 3bj5_A           92 PAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK  131 (147)
T ss_dssp             SEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSC
T ss_pred             CEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCcc
Confidence            99999875 322223333 788999999999987665553

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.19  E-value=2.7e-06  Score=68.11  Aligned_cols=44  Identities=14%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             CCCcEEEEEc-CCCCcccc-hhhhhHHHHHHHhcCCCCeE-EEEEeCc
Q 018270          158 KSKDVLVEFY-APWCGHCK-NLAPTYEKVAAAFTLEDDVV-VANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~-~~~~~~~~la~~~~~~~~v~-~~~vd~~  202 (358)
                      .++++++.|| +.||++|. ...|.+.++.+.|+.. ++. ++.|..+
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~-~v~~vv~Is~d   80 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK-GVTEILCISVN   80 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCCEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECC
Confidence            5788999999 89999999 8999999999988632 344 4444433

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.18  E-value=3.4e-06  Score=67.63  Aligned_cols=43  Identities=9%  Similarity=0.278  Sum_probs=35.8

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      .+++++|.|| +.||++|....|.+.++.+++   ..+.++.|..+.
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~---~~v~vv~Is~d~   85 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL---SNTIVLCISADL   85 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS---TTEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc---CCCEEEEEeCCC
Confidence            4688999999 899999999999999999988   346777676653

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.18  E-value=9.2e-07  Score=66.35  Aligned_cols=57  Identities=16%  Similarity=0.264  Sum_probs=42.3

Q ss_pred             CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-------HHHHHhcCCCcccEEEE
Q 018270          160 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------KDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       160 ~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------~~l~~~~~v~~~Pti~~  221 (358)
                      ...++.|+++||++|+.+.+.+.+++...   ++  +..+|++.+       ..+.+.+|+.++|++++
T Consensus        18 ~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~---~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i   81 (114)
T 2hze_A           18 NNKVTIFVKYTCPFCRNALDILNKFSFKR---GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF   81 (114)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHTTSCBCT---TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             cCCEEEEEeCCChhHHHHHHHHHHcCCCc---Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            34578899999999999999887654331   22  555666544       37888999999998743

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.16  E-value=2.9e-06  Score=60.78  Aligned_cols=71  Identities=18%  Similarity=0.218  Sum_probs=51.9

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---cc----HHHHHhcCCCcccEEEEEeCCCcceeeecCC
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---KY----KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG  235 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---~~----~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~  235 (358)
                      ++.|+++||++|+...+.++++..      .+....++..   +.    +++.+.+++.++|++++  +| .    ..|+
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~gi------~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g-~----~i~G   80 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREGV------DFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GD-K----HVLG   80 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHTC------CCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TT-E----EEES
T ss_pred             EEEEECCCChHHHHHHHHHHHcCC------CcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CC-E----EEeC
Confidence            678999999999999999888743      2344445421   23    56778899999999876  44 2    2345


Q ss_pred             CCHHHHHHHHH
Q 018270          236 RDLEDFVSFIN  246 (358)
Q Consensus       236 ~~~~~l~~~i~  246 (358)
                      .+.+.+.++++
T Consensus        81 ~~~~~l~~~l~   91 (92)
T 3ic4_A           81 YNEEKLKELIR   91 (92)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHhc
Confidence            68999998875

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.15  E-value=6.8e-07  Score=74.02  Aligned_cols=45  Identities=16%  Similarity=0.395  Sum_probs=39.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEH   85 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~   85 (358)
                      ..++++|+||+.|||||+.+.|.|   +++++.+.  ++|.|..++.+.+
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~--~~v~~~~~~v~~~  159 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP--EGVKMTKYHVNFM  159 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC--TTCCEEEEECSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCC--CCCEEEEeccCcC
Confidence            367899999999999999999999   99999886  5789999998754

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=1.9e-06  Score=66.25  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=43.3

Q ss_pred             cccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cH----HHHHhcCCCcccEEE
Q 018270          148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YK----DLAEKYGVSGFPTLK  220 (358)
Q Consensus       148 ~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~----~l~~~~~v~~~Pti~  220 (358)
                      ...+++.+. .. . ++.|+++||++|+.+.+.+.++..      .+..+.+|.+. .+    .+.+.+++.++|+++
T Consensus        17 ~~~~~~~i~-~~-~-vvvf~~~~Cp~C~~~~~~L~~~~i------~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~   85 (130)
T 2cq9_A           17 VNQIQETIS-DN-C-VVIFSKTSCSYCTMAKKLFHDMNV------NYKVVELDLLEYGNQFQDALYKMTGERTVPRIF   85 (130)
T ss_dssp             HHHHHHHHH-HS-S-EEEEECSSCSHHHHHHHHHHHHTC------CCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE
T ss_pred             HHHHHHHHc-CC-c-EEEEEcCCChHHHHHHHHHHHcCC------CcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE
Confidence            344566552 22 3 445999999999999999998742      23444444331 13    488899999999984

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=98.13  E-value=1.6e-05  Score=68.38  Aligned_cols=99  Identities=10%  Similarity=0.100  Sum_probs=77.9

Q ss_pred             ceEcC-cccHHHHHhcC-CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          143 VVVLT-ADNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       143 v~~l~-~~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      +.+++ .+++++++ +. +..++|.|++++   |....+.|.++|+.++  +++.|+.+   .+.+++++|++++ |+++
T Consensus         8 v~~l~s~~~~~~~~-~~~~~v~vVgff~~~---~~~~~~~F~~~A~~lr--~~~~F~~t---~~~~v~~~~~v~~-p~iv   77 (250)
T 3ec3_A            8 SKEILTLKQVQEFL-KDGDDVVILGVFQGV---GDPGYLQYQDAANTLR--EDYKFHHT---FSTEIAKFLKVSL-GKLV   77 (250)
T ss_dssp             SEECCCHHHHHHHH-HHCSSCEEEEECSCT---TCHHHHHHHHHHHHHT--TTCCEEEE---CCHHHHHHHTCCS-SEEE
T ss_pred             ceecCCHHHHHHHH-hcCCCeEEEEEEcCC---CchHHHHHHHHHHhhh--cCcEEEEE---CcHHHHHHcCCCC-CeEE
Confidence            55664 47888877 45 788899999986   5678889999999986  46777774   4577899999987 9999


Q ss_pred             EEeCC------Ccceeeec--CCCCHHHHHHHHHHhcCC
Q 018270          221 FFPKG------NKDGEEYG--GGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       221 ~~~~g------~~~~~~~~--g~~~~~~l~~~i~~~~~~  251 (358)
                      +|+++      ......|.  |..+.++|.+||+.++-+
T Consensus        78 lfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~P  116 (250)
T 3ec3_A           78 LMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALP  116 (250)
T ss_dssp             EECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSC
T ss_pred             EEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCC
Confidence            99863      23456788  479999999999998643

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.12  E-value=4.2e-06  Score=66.93  Aligned_cols=44  Identities=14%  Similarity=0.233  Sum_probs=35.6

Q ss_pred             CCCcEEEEEE-CCCChhhh-hhhHHHHHHHHHhhcCCceE-EEEEeCc
Q 018270           39 QDRGALVEFY-APWCGHCK-KLAPEYEKLGASFKKAKSVL-IGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~-~~~~~~~~~~~~~~~~~~v~-~~~vd~~   83 (358)
                      ++++++|.|| +.||++|. ...|.|.++.+++++. .+. ++.|..+
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~-~v~~vv~Is~d   80 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK-GVTEILCISVN   80 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCCEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECC
Confidence            5688999999 89999999 8999999999988753 455 6666554

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=3.5e-06  Score=64.75  Aligned_cols=63  Identities=16%  Similarity=0.255  Sum_probs=44.7

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc---h----hhHhhcCccCCCeEEE
Q 018270           30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---K----SLCSKYGVQGYPTIQW  102 (358)
Q Consensus        30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~P~l~~  102 (358)
                      .+.+.+.+..++ ++ .|+++||++|+.+.+.+.++.        +.+..+|++.+   +    ++.+.+++.++|++++
T Consensus        17 ~~~~~~~i~~~~-vv-vf~~~~Cp~C~~~~~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i   86 (130)
T 2cq9_A           17 VNQIQETISDNC-VV-IFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV   86 (130)
T ss_dssp             HHHHHHHHHHSS-EE-EEECSSCSHHHHHHHHHHHHT--------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEE
T ss_pred             HHHHHHHHcCCc-EE-EEEcCCChHHHHHHHHHHHcC--------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEE
Confidence            455666665543 43 499999999999999998753        22344555543   3    3778899999999853

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.11  E-value=9e-06  Score=65.36  Aligned_cols=44  Identities=18%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             CCCcEEEEEc-CCCCcccch-hhhhHHHHHHHhcCCCCe-EEEEEeCc
Q 018270          158 KSKDVLVEFY-APWCGHCKN-LAPTYEKVAAAFTLEDDV-VVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~-~~~~~~~la~~~~~~~~v-~~~~vd~~  202 (358)
                      .++++++.|| +.||++|.. ..|.+.++++.|+. .++ .++.|..+
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~-~gv~~vv~Is~d   76 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHG-KGVDIIACMAVN   76 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHH-TTCCEEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEeCC
Confidence            5677877775 999999999 99999999998863 346 66666554

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.10  E-value=4.6e-06  Score=71.83  Aligned_cols=89  Identities=12%  Similarity=0.154  Sum_probs=65.7

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----------------------------hhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----------------------------KSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~l~   89 (358)
                      .+++++|.|| +.||++|....|.|.++.++|++ ..+.++.|.++..                            .+++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~-~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va  168 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS-INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS  168 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH-cCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHH
Confidence            4688999999 99999999999999999999975 3477777766532                            2456


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccccC----CCCHHHHHHHHhc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKYEG----PRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~~g----~~~~~~i~~~i~~  128 (358)
                      +.||+.      .+|+++++++++.....+.+    .++.+++.+.|+.
T Consensus       169 ~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          169 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence            677775      47999999877755344332    4567777777764

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.10  E-value=4.5e-06  Score=65.44  Aligned_cols=63  Identities=14%  Similarity=0.269  Sum_probs=45.1

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc---h----hhHhhcCccCCCeEEE
Q 018270           30 EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---K----SLCSKYGVQGYPTIQW  102 (358)
Q Consensus        30 ~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~P~l~~  102 (358)
                      .+.+.+.++++ .++| |+++||++|+.+.+.+.++.-        .+..+|++.+   +    ++++.+++.++|++++
T Consensus        39 ~~~~~~~i~~~-~Vvv-f~~~~Cp~C~~~k~~L~~~~i--------~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi  108 (146)
T 2ht9_A           39 VNQIQETISDN-CVVI-FSKTSCSYCTMAKKLFHDMNV--------NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV  108 (146)
T ss_dssp             HHHHHHHHHHC-SEEE-EECTTCHHHHHHHHHHHHHTC--------CCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             HHHHHHHhcCC-CEEE-EECCCChhHHHHHHHHHHcCC--------CeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEE
Confidence            46677777655 3444 999999999999999987632        2334555443   3    3788999999999853

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.09  E-value=2.7e-06  Score=66.74  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             cccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cH----HHHHhcCCCcccEEE
Q 018270          148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YK----DLAEKYGVSGFPTLK  220 (358)
Q Consensus       148 ~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~----~l~~~~~v~~~Pti~  220 (358)
                      ...+++.+. .. . ++.|+++||++|+.+.+.+.++..      .+..+.+|.+. .+    .+.+.+|+.++|+++
T Consensus        39 ~~~~~~~i~-~~-~-Vvvf~~~~Cp~C~~~k~~L~~~~i------~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if  107 (146)
T 2ht9_A           39 VNQIQETIS-DN-C-VVIFSKTSCSYCTMAKKLFHDMNV------NYKVVELDLLEYGNQFQDALYKMTGERTVPRIF  107 (146)
T ss_dssp             HHHHHHHHH-HC-S-EEEEECTTCHHHHHHHHHHHHHTC------CCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE
T ss_pred             HHHHHHHhc-CC-C-EEEEECCCChhHHHHHHHHHHcCC------CeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE
Confidence            355666662 22 3 444999999999999999998743      23444444331 13    478899999999984

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.08  E-value=2.3e-05  Score=63.33  Aligned_cols=43  Identities=26%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD   81 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd   81 (358)
                      ..+..++.|+..+||+|+.+.+.+.++.+.+.+.++|.+...+
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~   68 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKL   68 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEe
Confidence            3566899999999999999999999998887322456655443

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.08  E-value=4.8e-06  Score=62.35  Aligned_cols=64  Identities=17%  Similarity=0.213  Sum_probs=45.5

Q ss_pred             hHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch-------hhHhhcCccCCCeEEE
Q 018270           32 NFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-------SLCSKYGVQGYPTIQW  102 (358)
Q Consensus        32 ~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~P~l~~  102 (358)
                      .+.+.++.  ..++.|+++|||+|+.+.+.+.+.....   +.  +..+|++.++       .+.+.+|+.++|++++
T Consensus        11 ~~~~~i~~--~~vv~f~~~~Cp~C~~~~~~L~~~~~~~---~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i   81 (114)
T 2hze_A           11 FVQQRLAN--NKVTIFVKYTCPFCRNALDILNKFSFKR---GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF   81 (114)
T ss_dssp             HHHTTCCT--TCEEEEECTTCHHHHHHHHHHTTSCBCT---TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHhcc--CCEEEEEeCCChhHHHHHHHHHHcCCCc---Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            34444443  3577799999999999999887543221   11  6667777664       6888999999999754

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.08  E-value=2.4e-05  Score=64.87  Aligned_cols=72  Identities=15%  Similarity=0.262  Sum_probs=52.0

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----------------------HHHHHhcCC
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v  213 (358)
                      .+++++|.|| +.||++|....|.+.++.+.|   .++.++.|..+..                       ..+++.||+
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~---~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv  153 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL---ENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGV  153 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS---TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTC
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh---CCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCc
Confidence            5788999999 689999999999999999988   3566666655522                       245666666


Q ss_pred             C---------cccEEEEEeCCCcceeee
Q 018270          214 S---------GFPTLKFFPKGNKDGEEY  232 (358)
Q Consensus       214 ~---------~~Pti~~~~~g~~~~~~~  232 (358)
                      .         ..|+.+++...++....+
T Consensus       154 ~~~~~~~~g~~~p~~~lID~~G~I~~~~  181 (200)
T 3zrd_A          154 AITEGPLAGLTARAVVVLDGQDNVIYSE  181 (200)
T ss_dssp             EECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             eeecccCCCccccEEEEECCCCeEEEEE
Confidence            4         248888887665544433

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.06  E-value=5.7e-06  Score=58.85  Aligned_cols=51  Identities=22%  Similarity=0.453  Sum_probs=40.8

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhc-CCCcccEEE
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKY-GVSGFPTLK  220 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~-~v~~~Pti~  220 (358)
                      .++.|+++||++|+...+.+++..        +.+..+|++  ..+++.+.+ ++.++|+++
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~--------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~   60 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG--------VKYTDIDASTSLRQEMVQRANGRNTFPQIF   60 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT--------CCEEEECSCHHHHHHHHHHHHSSCCSCEEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC--------CCcEEEECCHHHHHHHHHHhCCCCCcCEEE
Confidence            477899999999999999888763        335566666  556788889 999999974

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.06  E-value=3.4e-05  Score=62.12  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=40.9

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCc-ccchhhhhHHHHHHHhcCC-CCeEEEEEeCc
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCG-HCKNLAPTYEKVAAAFTLE-DDVVVANLDAD  202 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~-~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~  202 (358)
                      +...+++.+..-- -.+++++|.||.+||+ +|....+.+.++.+.++.. .++.++.|.+|
T Consensus        17 L~d~~G~~v~l~d-~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           17 FTNQDGKPFGTKD-LKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             EECTTSCEEEHHH-HTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             EECCCCCEEeHHH-hCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            4444554443222 2689999999999996 7999999999888877533 35666666544

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.06  E-value=2.5e-05  Score=63.57  Aligned_cols=39  Identities=18%  Similarity=0.471  Sum_probs=32.2

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEE
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI   77 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~   77 (358)
                      .+++++|+|+.-.||||+++.|.+.++.+.+.+...+.+
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~   58 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQK   58 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEE
Confidence            467899999999999999999999999998864333333

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.04  E-value=1.8e-05  Score=65.21  Aligned_cols=41  Identities=24%  Similarity=0.501  Sum_probs=33.5

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD  200 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd  200 (358)
                      .++.+++.|+.+||++|+.+.|.+.++.+.+..  ++.+..+.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p   61 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEH   61 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEE
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEec
Confidence            467789999999999999999999999998752  55555443

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.03  E-value=2.6e-06  Score=64.29  Aligned_cols=64  Identities=16%  Similarity=0.296  Sum_probs=45.8

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChhhhhh-hHHHHHHHHHhhcCCceEEEEEeCccch-------hhHhhcCccCCCeEE
Q 018270           31 DNFEKEVGQDRGALVEFYAPWCGHCKKL-APEYEKLGASFKKAKSVLIGKVDCDEHK-------SLCSKYGVQGYPTIQ  101 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya~~c~~C~~~-~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~P~l~  101 (358)
                      +.+++.++..+  ++.|+++|||+|+.+ .+.+.+...     ..+.+..+|.+.++       ++.+.+|+.++|+++
T Consensus        16 ~~~~~~i~~~~--Vvvf~~~~Cp~C~~alk~~L~~~~~-----~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vf   87 (118)
T 3c1r_A           16 KHVKDLIAENE--IFVASKTYCPYCHAALNTLFEKLKV-----PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY   87 (118)
T ss_dssp             HHHHHHHHHSS--EEEEECSSCHHHHHHHHHHHTTSCC-----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEE
T ss_pred             HHHHHHHccCc--EEEEEcCCCcCHHHHHHHHHHHcCC-----CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEE
Confidence            45666665443  556999999999998 777765431     23566677777653       588889999999974

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.03  E-value=1e-05  Score=57.86  Aligned_cols=77  Identities=21%  Similarity=0.403  Sum_probs=54.0

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhc-----CCCcccEEEEEeCCCcceeeecCCC
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-----GVSGFPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~-----~v~~~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      .++.|..+||++|......+.+.        ++.+-.+|++.+++..+.+     |..++|++++ .+|.  .   -++.
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~--------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~--~---l~~~   70 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN--------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGS--T---LTNP   70 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSC--E---EESC
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc--------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCE--E---EeCC
Confidence            47889999999999988777653        3556677777665443332     7788998654 4442  1   2346


Q ss_pred             CHHHHHHHHHHhcCCC
Q 018270          237 DLEDFVSFINEKCGTS  252 (358)
Q Consensus       237 ~~~~l~~~i~~~~~~~  252 (358)
                      +.++|.++|.+..|..
T Consensus        71 ~~~el~~~L~el~gL~   86 (92)
T 2lqo_A           71 SADEVKAKLVKIAGLE   86 (92)
T ss_dssp             CHHHHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHHhcCCc
Confidence            8899999999877643

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.03  E-value=1.6e-05  Score=65.94  Aligned_cols=43  Identities=9%  Similarity=0.298  Sum_probs=36.0

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE   84 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   84 (358)
                      .+++++|.|| +.||++|....|.+.++.+++   ..+.++.|.++.
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~---~~v~vv~Is~D~  120 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL---ENTVVLCISSDL  120 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS---TTEEEEEEESSC
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh---CCCEEEEEECCC
Confidence            4688999999 689999999999999999988   347777776653

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.03  E-value=1.2e-05  Score=58.99  Aligned_cols=75  Identities=11%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---cHHH----HHhcCCCcccEEEEEeCCCcceee
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---YKDL----AEKYGVSGFPTLKFFPKGNKDGEE  231 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---~~~l----~~~~~v~~~Pti~~~~~g~~~~~~  231 (358)
                      +...++.|+++||++|+...+.+.+....      +....||..+   ..++    .+.+++.++|++++  +|+    .
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~i~------y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~----~   87 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDLGVD------FDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE----K   87 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHHTBC------EEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT----E
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCC------cEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC----E
Confidence            34557889999999999999999887432      3445555421   1223    23468999999776  332    3


Q ss_pred             ecCCCCHHHHHHHH
Q 018270          232 YGGGRDLEDFVSFI  245 (358)
Q Consensus       232 ~~g~~~~~~l~~~i  245 (358)
                      +.|+.+.+.|.++|
T Consensus        88 ~igg~~~~~l~~~L  101 (103)
T 3nzn_A           88 AIVGFKEKEIRESL  101 (103)
T ss_dssp             EEESCCHHHHHHHT
T ss_pred             EEEcCCHHHHHHHh
Confidence            45678888888765

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=2.9e-05  Score=62.78  Aligned_cols=100  Identities=6%  Similarity=0.015  Sum_probs=74.5

Q ss_pred             cChhhHHHHh--------cCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccch----------
Q 018270           28 LTEDNFEKEV--------GQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHK----------   86 (358)
Q Consensus        28 l~~~~f~~~~--------~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~----------   86 (358)
                      .-...|.+++        ++.|+++|+++++||..|..+....   +++.+.++  .++.+...|.+...          
T Consensus        35 F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~--~nfV~w~~dv~~~e~~~~~~~~~~  112 (178)
T 2ec4_A           35 FFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLS--QNFITWAWDLTKDSNRARFLTMCN  112 (178)
T ss_dssp             CCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHH--HTEEEEEEECCSHHHHHHHHHHHH
T ss_pred             eeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHH--cCEEEEEEeCCCchhhhhhhhhhh
Confidence            3345565554        4578999999999999999997554   66777776  46778888887553          


Q ss_pred             -----hhHh---hcCccCCCeEEEccCCC---CCcccccCCCCHHHHHHHHhcc
Q 018270           87 -----SLCS---KYGVQGYPTIQWFPKGS---LEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        87 -----~l~~---~~~i~~~P~l~~~~~~~---~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                           .++.   .+++.+||++.++...+   ....+..|..+++++.+.+...
T Consensus       113 ~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~  166 (178)
T 2ec4_A          113 RHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA  166 (178)
T ss_dssp             HHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence                 3443   38999999999996543   2245678999999999887653

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.02  E-value=1e-05  Score=59.61  Aligned_cols=62  Identities=19%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             hhhHHHHhcCCCcEEEEEEC-----CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhcCccCCCeE
Q 018270           30 EDNFEKEVGQDRGALVEFYA-----PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTI  100 (358)
Q Consensus        30 ~~~f~~~~~~~~~~lv~fya-----~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l  100 (358)
                      .+.+.+.++.++ ++| |++     +||++|+.+.+.+.+..        +.+..+|.++++.    +...+|+.++|++
T Consensus         7 ~~~~~~~i~~~~-vvv-f~~g~~~~~~C~~C~~~~~~L~~~~--------i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v   76 (105)
T 2yan_A            7 EERLKVLTNKAS-VML-FMKGNKQEAKCGFSKQILEILNSTG--------VEYETFDILEDEEVRQGLKAYSNWPTYPQL   76 (105)
T ss_dssp             HHHHHHHHTSSS-EEE-EESBCSSSBCTTHHHHHHHHHHHHT--------CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHHHhccCC-EEE-EEecCCCCCCCccHHHHHHHHHHCC--------CCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence            345677776554 544 666     99999999999987652        4566778877765    4556899999998


Q ss_pred             E
Q 018270          101 Q  101 (358)
Q Consensus       101 ~  101 (358)
                      +
T Consensus        77 ~   77 (105)
T 2yan_A           77 Y   77 (105)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.00  E-value=1e-05  Score=59.60  Aligned_cols=64  Identities=19%  Similarity=0.395  Sum_probs=44.2

Q ss_pred             ccHHHHHhcCCCcEEEEEcC-----CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH----HHHhcCCCcccEE
Q 018270          149 DNFDEIVLDKSKDVLVEFYA-----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTL  219 (358)
Q Consensus       149 ~~f~~~~~~~~~~v~v~f~a-----~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pti  219 (358)
                      +.+++++ . ...++| |++     +||++|+...+.+.++.        +.+..+|++.++.    +.+.+|+.++|++
T Consensus         8 ~~~~~~i-~-~~~vvv-f~~g~~~~~~C~~C~~~~~~L~~~~--------i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v   76 (105)
T 2yan_A            8 ERLKVLT-N-KASVML-FMKGNKQEAKCGFSKQILEILNSTG--------VEYETFDILEDEEVRQGLKAYSNWPTYPQL   76 (105)
T ss_dssp             HHHHHHH-T-SSSEEE-EESBCSSSBCTTHHHHHHHHHHHHT--------CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHHh-c-cCCEEE-EEecCCCCCCCccHHHHHHHHHHCC--------CCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence            3455666 2 334444 777     99999999999998763        3456677766554    5666899999997


Q ss_pred             EEEeCC
Q 018270          220 KFFPKG  225 (358)
Q Consensus       220 ~~~~~g  225 (358)
                        |.+|
T Consensus        77 --~i~g   80 (105)
T 2yan_A           77 --YVKG   80 (105)
T ss_dssp             --EETT
T ss_pred             --EECC
Confidence              3445

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.98  E-value=2.8e-05  Score=62.83  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=59.0

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------------  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------------------  202 (358)
                      ..+.+++.|+..|||+|+.+.|.+.++.+.+...+++.+...+..                                   
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~  105 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQ  105 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTH
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcC
Confidence            456689999999999999999999988888732234444433221                                   


Q ss_pred             -------------------------------ccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          203 -------------------------------KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       203 -------------------------------~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                                                     .+..++.++||.++||+++  +|.    .+.|..+.+.|.+.|.
T Consensus       106 ~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~----~~~G~~~~~~l~~~i~  174 (175)
T 1z6m_A          106 DEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY----IFDESVTEEELRGYIE  174 (175)
T ss_dssp             HHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE----EECTTCCHHHHHHHHT
T ss_pred             hhhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCE----EccCCCCHHHHHHHhc
Confidence                                           0123567789999999665  452    4578889999888764

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.98  E-value=3.8e-05  Score=62.43  Aligned_cols=89  Identities=15%  Similarity=0.327  Sum_probs=64.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH--------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK--------------------------------  205 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------------------------------  205 (358)
                      .+++++|.|+.-.||+|+.+.|.+.++.+.+..+..+.+..+......                                
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~   99 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   99 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999998864444444444321110                                


Q ss_pred             -----------------------------------------HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHH
Q 018270          206 -----------------------------------------DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF  244 (358)
Q Consensus       206 -----------------------------------------~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~  244 (358)
                                                               .+++++||+++||+++  +| +..+...+..+.+++.+-
T Consensus       100 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NG-ky~v~~~~~~s~e~~~~~  176 (184)
T 4dvc_A          100 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NN-RYLVQGQSAKSLDEYFDL  176 (184)
T ss_dssp             CCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT-TEEECGGGCSSHHHHHHH
T ss_pred             hhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CC-EEeeCCcCCCCHHHHHHH
Confidence                                                     6778899999999876  44 333444566788888888


Q ss_pred             HHHhc
Q 018270          245 INEKC  249 (358)
Q Consensus       245 i~~~~  249 (358)
                      |+..+
T Consensus       177 i~~Ll  181 (184)
T 4dvc_A          177 VNYLL  181 (184)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            77654

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.98  E-value=2e-06  Score=61.62  Aligned_cols=73  Identities=18%  Similarity=0.193  Sum_probs=50.6

Q ss_pred             cEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---cc----hhhHhhcCccCCCeEEEccCCCCCccccc
Q 018270           42 GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---EH----KSLCSKYGVQGYPTIQWFPKGSLEPKKYE  114 (358)
Q Consensus        42 ~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---~~----~~l~~~~~i~~~P~l~~~~~~~~~~~~~~  114 (358)
                      ..++.|+++||++|+...+.+++..-.      +....++..   +.    .++.+.+++.++|++++  +|.     +-
T Consensus        12 ~~v~ly~~~~Cp~C~~~~~~L~~~gi~------~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~-----~i   78 (92)
T 3ic4_A           12 AEVLMYGLSTCPHCKRTLEFLKREGVD------FEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDK-----HV   78 (92)
T ss_dssp             SSSEEEECTTCHHHHHHHHHHHHHTCC------CEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTE-----EE
T ss_pred             ceEEEEECCCChHHHHHHHHHHHcCCC------cEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCE-----EE
Confidence            346778999999999999988875422      233333321   23    56778899999999987  331     22


Q ss_pred             CCCCHHHHHHHHh
Q 018270          115 GPRSTEALAEYVN  127 (358)
Q Consensus       115 g~~~~~~i~~~i~  127 (358)
                      |+.+.+.+.+++.
T Consensus        79 ~G~~~~~l~~~l~   91 (92)
T 3ic4_A           79 LGYNEEKLKELIR   91 (92)
T ss_dssp             ESCCHHHHHHHHH
T ss_pred             eCCCHHHHHHHhc
Confidence            4468899998875

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.98  E-value=6.8e-05  Score=63.24  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=64.1

Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-------------------------------HHHHH
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------------------KDLAE  209 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------------------~~l~~  209 (358)
                      .+++.|+++||++|....+.+.+++++|.. .++.++.|.++..                               ..+++
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~-~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~  112 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAK-RNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAI  112 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHH
Confidence            566777999999999999999999999964 3566666655421                               24667


Q ss_pred             hcCCC------------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHhc
Q 018270          210 KYGVS------------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKC  249 (358)
Q Consensus       210 ~~~v~------------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~~  249 (358)
                      .||+.            ..|+.+++.++++....+.|    +++.+++...|....
T Consensus       113 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          113 LLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             HTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            78873            36899999877765555443    467888888887653

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.97  E-value=3.9e-05  Score=64.77  Aligned_cols=86  Identities=16%  Similarity=0.138  Sum_probs=59.4

Q ss_pred             cEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc-------------------------------hhhHh
Q 018270           42 GALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------------------------------KSLCS   90 (358)
Q Consensus        42 ~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------------------~~l~~   90 (358)
                      .+|+.|+++||++|....+.+.++.++++. ..+.++.|.++..                               .++++
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~-~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~  112 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAK-RNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAI  112 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHH
Confidence            456667899999999999999999999975 3577777766532                               23456


Q ss_pred             hcCcc------------CCCeEEEccCCCCCcccccC----CCCHHHHHHHHhc
Q 018270           91 KYGVQ------------GYPTIQWFPKGSLEPKKYEG----PRSTEALAEYVNN  128 (358)
Q Consensus        91 ~~~i~------------~~P~l~~~~~~~~~~~~~~g----~~~~~~i~~~i~~  128 (358)
                      .||+.            .+|+.+++++++.....+.|    .++.+++.+.|+.
T Consensus       113 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~  166 (224)
T 1prx_A          113 LLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS  166 (224)
T ss_dssp             HTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             HhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            66663            36788888776654333322    3567777777664

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.97  E-value=1.9e-05  Score=64.46  Aligned_cols=44  Identities=23%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             CCC-cEEEEEcCCCCcccch-hhhhHHHHHHHhcCCCCeE-EEEEeCc
Q 018270          158 KSK-DVLVEFYAPWCGHCKN-LAPTYEKVAAAFTLEDDVV-VANLDAD  202 (358)
Q Consensus       158 ~~~-~v~v~f~a~~C~~c~~-~~~~~~~la~~~~~~~~v~-~~~vd~~  202 (358)
                      .++ .+++.||+.||++|.. ..|.+.++++.|+.. ++. ++.|..+
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d  101 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR-GVDDIAVVAVN  101 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESS
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            455 4566677999999999 799999999999743 354 5555554

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.97  E-value=1.9e-05  Score=64.56  Aligned_cols=30  Identities=23%  Similarity=0.507  Sum_probs=27.8

Q ss_pred             CCcEEEEEcCCCCcccchhhhhHHHHHHHh
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAF  188 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~  188 (358)
                      +++++|.|+..||++|+.+.|.+.++.+.+
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~   51 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA   51 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh
Confidence            578899999999999999999999998887

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.96  E-value=1.6e-05  Score=62.24  Aligned_cols=82  Identities=29%  Similarity=0.563  Sum_probs=60.2

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe------------------------------------
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD------------------------------------   81 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd------------------------------------   81 (358)
                      ..++.+++.|+-++||+|+++.+.+.++       +++.+...+                                    
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~   84 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM-------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKF   84 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC-------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCC
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc-------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            3567889999999999999999987643       223333221                                    


Q ss_pred             ------C----ccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           82 ------C----DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        82 ------~----~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                            |    +++.++++++||+++||+++ .+|.    .+.|..+.+.+.++|.+...
T Consensus        85 ~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~----~i~G~~~~~~l~~~i~~~~~  139 (147)
T 3gv1_A           85 PVGGSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR----TQSGYSPMPQLEEIIRKNQQ  139 (147)
T ss_dssp             CTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC----EEESCCCTTHHHHHHHHTSC
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE----EeeCCCCHHHHHHHHHHHHH
Confidence                  1    12346788999999999998 4442    47799999999999987543

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.96  E-value=3.2e-06  Score=63.76  Aligned_cols=67  Identities=16%  Similarity=0.345  Sum_probs=45.3

Q ss_pred             ccHHHHHhcCCCcEEEEEcCCCCcccchh-hhhHHHHHHHhcCCCCeEEEEEeCccc-------HHHHHhcCCCcccEEE
Q 018270          149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDVVVANLDADKY-------KDLAEKYGVSGFPTLK  220 (358)
Q Consensus       149 ~~f~~~~~~~~~~v~v~f~a~~C~~c~~~-~~~~~~la~~~~~~~~v~~~~vd~~~~-------~~l~~~~~v~~~Pti~  220 (358)
                      ..+++.+. ..  .++.|+++||++|+.. .+.+.+++.     .++.+..+|++.+       ..+.+.+|+.++|++ 
T Consensus        16 ~~~~~~i~-~~--~Vvvf~~~~Cp~C~~alk~~L~~~~~-----~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v-   86 (118)
T 3c1r_A           16 KHVKDLIA-EN--EIFVASKTYCPYCHAALNTLFEKLKV-----PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI-   86 (118)
T ss_dssp             HHHHHHHH-HS--SEEEEECSSCHHHHHHHHHHHTTSCC-----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHHHc-cC--cEEEEEcCCCcCHHHHHHHHHHHcCC-----CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE-
Confidence            34555552 22  3667999999999998 887766541     2255666666644       368889999999986 


Q ss_pred             EEeCC
Q 018270          221 FFPKG  225 (358)
Q Consensus       221 ~~~~g  225 (358)
                       |.+|
T Consensus        87 -fi~g   90 (118)
T 3c1r_A           87 -YING   90 (118)
T ss_dssp             -EETT
T ss_pred             -EECC
Confidence             4455

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.95  E-value=2e-05  Score=64.96  Aligned_cols=41  Identities=22%  Similarity=0.540  Sum_probs=33.3

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD   81 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd   81 (358)
                      .+++.+++|+.+|||+|..+.|.+.++.+.+.  ..+.+..+.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~--~~v~~~~~p   61 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALP--SDAYLRTEH   61 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSC--TTEEEEEEE
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCC--CceEEEEec
Confidence            46778999999999999999999999998875  345554443

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.95  E-value=1.1e-05  Score=58.70  Aligned_cols=58  Identities=14%  Similarity=0.218  Sum_probs=41.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHH----HHhc-CCCcccEEEEEeCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL----AEKY-GVSGFPTLKFFPKG  225 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l----~~~~-~v~~~Pti~~~~~g  225 (358)
                      .....++.|+++||++|+...+.+++..        +.+..+|++.+++.    .+.. |..++|++  |-+|
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~~--------i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g   75 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKRKG--------VEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDD   75 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHHHT--------CCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETT
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHHCC--------CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECC
Confidence            3455688899999999999999998763        33445666655443    3444 89999987  3344

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.95  E-value=1.6e-05  Score=62.31  Aligned_cols=81  Identities=30%  Similarity=0.511  Sum_probs=59.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe--C----------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD--A----------------------------------  201 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd--~----------------------------------  201 (358)
                      .++.+++.|+.++|++|+++.+.+.++       +++.+....  .                                  
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~   85 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFP   85 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC-------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc-------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence            567889999999999999998877644       122222111  1                                  


Q ss_pred             ----------cccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          202 ----------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       202 ----------~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                                +.+..+++++||+++||+++ .+|.    .+.|..+.+.|.++|.+...
T Consensus        86 ~~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~----~i~G~~~~~~l~~~i~~~~~  139 (147)
T 3gv1_A           86 VGGSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR----TQSGYSPMPQLEEIIRKNQQ  139 (147)
T ss_dssp             TTCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC----EEESCCCTTHHHHHHHHTSC
T ss_pred             CccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE----EeeCCCCHHHHHHHHHHHHH
Confidence                      12347889999999999988 4452    46799999999999987643

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.92  E-value=9.3e-06  Score=65.55  Aligned_cols=65  Identities=14%  Similarity=0.215  Sum_probs=47.0

Q ss_pred             HHHHhcCCCcEEEEEECCCChhhhhh-hHHHHHHHHHhhcCCceE-EEEEeCcc---chhhHhhcCcc-CCC
Q 018270           33 FEKEVGQDRGALVEFYAPWCGHCKKL-APEYEKLGASFKKAKSVL-IGKVDCDE---HKSLCSKYGVQ-GYP   98 (358)
Q Consensus        33 f~~~~~~~~~~lv~fya~~c~~C~~~-~~~~~~~~~~~~~~~~v~-~~~vd~~~---~~~l~~~~~i~-~~P   98 (358)
                      +.+..++.+.+++.||+.||++|... .|.|.++.++++.. .+. ++.|+.+.   ...+++++++. .||
T Consensus        37 l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~-g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp  107 (171)
T 2pwj_A           37 VNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK-GVDSVICVAINDPYTVNAWAEKIQAKDAIE  107 (171)
T ss_dssp             HHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT-TCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             HHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence            33433444567888999999999998 99999999988753 355 77777653   34567777773 566

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=97.92  E-value=5e-05  Score=61.12  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=36.9

Q ss_pred             CCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhhcC-CceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCG-HCKKLAPEYEKLGASFKKA-KSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~   83 (358)
                      .+++++|.||.+||+ .|....+.+.++.+.++.. .+|.++.|.++
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            579999999999997 7999999999998888643 35777777654

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.91  E-value=1.3e-05  Score=56.71  Aligned_cols=75  Identities=12%  Similarity=0.113  Sum_probs=52.7

Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcCC-----CcccEEEEEeCCCcceee
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGV-----SGFPTLKFFPKGNKDGEE  231 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~v-----~~~Pti~~~~~g~~~~~~  231 (358)
                      ..++.|+++||++|+...+.+.++..      .+.+..+|.+.+    +++.+.+|.     .++|++++  +| .   .
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~i------~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g-~---~   71 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENNI------AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DD-E---H   71 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTC------CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TT-E---E
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcCC------CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CC-E---E
Confidence            34788999999999999888876532      356667776654    468888888     89999854  44 2   1


Q ss_pred             ecCCCCHHHHHHHHHHhcC
Q 018270          232 YGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       232 ~~g~~~~~~l~~~i~~~~~  250 (358)
                      ..   ..+++.+++.+..+
T Consensus        72 i~---g~~~i~~~~~~~~~   87 (89)
T 3msz_A           72 IG---GFTELKANADKILN   87 (89)
T ss_dssp             EE---SHHHHHHTHHHHTT
T ss_pred             Ee---ChHHHHHHHHHHhc
Confidence            12   46677777766544

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=97.91  E-value=3.2e-05  Score=65.10  Aligned_cols=88  Identities=14%  Similarity=0.188  Sum_probs=64.1

Q ss_pred             cEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----------------------------HHHHHhcC
Q 018270          161 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----------------------------KDLAEKYG  212 (358)
Q Consensus       161 ~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------------------------~~l~~~~~  212 (358)
                      .+++.|+++||++|....+.+.++.++|+. .++.++.|.++..                            ..+++.||
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~-~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~yg  112 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLK-LNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLK  112 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHT
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhC
Confidence            455566899999999999999999999964 3566666665421                            25777888


Q ss_pred             CC------------cccEEEEEeCCCcceeeec----CCCCHHHHHHHHHHhc
Q 018270          213 VS------------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINEKC  249 (358)
Q Consensus       213 v~------------~~Pti~~~~~g~~~~~~~~----g~~~~~~l~~~i~~~~  249 (358)
                      +.            ..|+.+++.+.++....+.    .+++.+++...|....
T Consensus       113 v~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          113 IMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             CEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            73            3689999987776444443    3478899988887653

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.90  E-value=1.2e-05  Score=57.24  Aligned_cols=52  Identities=21%  Similarity=0.438  Sum_probs=41.4

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc--cchhhHhhc-CccCCCeEEE
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--EHKSLCSKY-GVQGYPTIQW  102 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~-~i~~~P~l~~  102 (358)
                      .++.|+++||++|+.+.+.+++..        +.+..+|.+  ...++.+.+ ++.++|++++
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~--------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~   61 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG--------VKYTDIDASTSLRQEMVQRANGRNTFPQIFI   61 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT--------CCEEEECSCHHHHHHHHHHHHSSCCSCEEEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC--------CCcEEEECCHHHHHHHHHHhCCCCCcCEEEE
Confidence            477899999999999999888642        445667776  556788888 9999999853

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.89  E-value=2.5e-05  Score=62.71  Aligned_cols=59  Identities=14%  Similarity=0.202  Sum_probs=44.7

Q ss_pred             CCCcEEEEEE-CCCChhhhh-hhHHHHHHHHHhhcCCce-EEEEEeCccc---hhhHhhcCcc-CCC
Q 018270           39 QDRGALVEFY-APWCGHCKK-LAPEYEKLGASFKKAKSV-LIGKVDCDEH---KSLCSKYGVQ-GYP   98 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~-~~~~~~~~~~~~~~~~~v-~~~~vd~~~~---~~l~~~~~i~-~~P   98 (358)
                      .+++++|.|| +.||++|.. ..|.|.++.+++++ ..+ .++.|+.+..   ..+++++++. .||
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~-~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp   95 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHG-KGVDIIACMAVNDSFVMDAWGKAHGADDKVQ   95 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHH-TTCCEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEeCCCHHHHHHHHHhcCCCcceE
Confidence            4677888886 999999999 99999999998875 347 7777877643   3456677664 355

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=97.88  E-value=5.9e-05  Score=63.96  Aligned_cols=91  Identities=13%  Similarity=0.081  Sum_probs=65.4

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-----------------------------cHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------------YKDL  207 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------------~~~l  207 (358)
                      +++.+++.|| ++||++|....+.+.++.++|+. .++.++.|.++.                             ...+
T Consensus        28 Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~-~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~v  106 (233)
T 2v2g_A           28 GNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKK-RGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETREL  106 (233)
T ss_dssp             CSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH-cCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHH
Confidence            3447888888 99999999999999999998863 346666555542                             1246


Q ss_pred             HHhcCCC------------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHHhc
Q 018270          208 AEKYGVS------------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKC  249 (358)
Q Consensus       208 ~~~~~v~------------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~~  249 (358)
                      ++.||+.            .+|+++++.+.++....+.+    +++.+++...|....
T Consensus       107 a~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          107 AVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            6777774            47899999877665444432    467888888887653

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.87  E-value=1.1e-05  Score=65.12  Aligned_cols=57  Identities=21%  Similarity=0.335  Sum_probs=42.5

Q ss_pred             CcEEEEEcCCCCcccchh-hhhHHHHHHHhcCCCCeE-EEEEeCcc---cHHHHHhcCCC-ccc
Q 018270          160 KDVLVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDVV-VANLDADK---YKDLAEKYGVS-GFP  217 (358)
Q Consensus       160 ~~v~v~f~a~~C~~c~~~-~~~~~~la~~~~~~~~v~-~~~vd~~~---~~~l~~~~~v~-~~P  217 (358)
                      +.+++.||+.||++|... .|.+.++.++|+.. ++. ++.|+.++   ...+++++++. .||
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~-g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp  107 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK-GVDSVICVAINDPYTVNAWAEKIQAKDAIE  107 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT-TCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence            567889999999999998 99999999988643 455 55565553   34567777773 566

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=97.87  E-value=5.7e-05  Score=60.98  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=27.0

Q ss_pred             CCCcEE-EEEcCCCCcccc-hhhhhHHHHHHHhcCC
Q 018270          158 KSKDVL-VEFYAPWCGHCK-NLAPTYEKVAAAFTLE  191 (358)
Q Consensus       158 ~~~~v~-v~f~a~~C~~c~-~~~~~~~~la~~~~~~  191 (358)
                      .+++++ +.||+.||++|. ...|.+.+++++|+..
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~   77 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK   77 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            456554 555699999999 5899999999999744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d2c0ga1	106	a.71.1.1 (A:1146-1251) Windbeutel, C-terminal doma	1e-29
d1g7da_	106	a.71.1.1 (A:) Endoplasmic reticulum protein ERP29,	2e-29
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-27
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-27
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	2e-25
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	8e-25
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	9e-24
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	1e-18
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	2e-23
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	2e-16
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	3e-23
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	1e-19
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	8e-22
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	3e-20
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	5e-21
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	5e-20
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	1e-20
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	5e-16
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	5e-20
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	3e-16
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	1e-19
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	5e-15
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	6e-19
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	2e-08
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	1e-18
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	3e-17
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	9e-18
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	2e-16
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	1e-17
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	3e-17
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	7e-17
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	6e-16
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	5e-16
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-12
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-15
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-12
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	1e-13
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	3e-11
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	5e-13
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	2e-11
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	4e-12
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	8e-12
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	6e-12
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	1e-08
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	1e-11
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	2e-09
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	2e-11
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	1e-10
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	4e-11
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	3e-10
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	5e-11
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	3e-10
d2fwha1	117	c.47.1.1 (A:428-544) Thiol:disulfide interchange p	5e-11
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	7e-11
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	1e-08
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	8e-11
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	6e-08
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	2e-10
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	9e-08
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	6e-10
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	2e-08
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	1e-09
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	1e-06
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	2e-09
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	9e-07
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	4e-09
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	3e-07
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-08
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	2e-07
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	6e-08
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	4e-05
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	7e-06
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	2e-05
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	3e-05
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	0.004
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	3e-04
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	7e-04
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	0.002

>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: ERP29 C domain-like
superfamily: ERP29 C domain-like
family: ERP29 C domain-like
domain: Windbeutel, C-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  107 bits (270), Expect = 1e-29
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 263 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEG-STARHGKIYLKVAKNYMDKGS 321
            G +   + ++K +      E+  +  K++   E L      ++ + YL   +   + G 
Sbjct: 2   DGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGY 61

Query: 322 DYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           D+ ++E  RL R+    ++ AK +E + K NIL  F
Sbjct: 62  DFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVF 97

>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 106

class: All alpha proteins
fold: ERP29 C domain-like
superfamily: ERP29 C domain-like
family: ERP29 C domain-like
domain: Endoplasmic reticulum protein ERP29, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  107 bits (268), Expect = 2e-29
 Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 264 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 322
           G + + DAL  +F+ AS  E ++A+  + + G+  ++ +  +    YLK+    +D+G D
Sbjct: 2   GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 61

Query: 323 YAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 357
           +   E+ R+ ++++  +S  K +E     NIL+ F
Sbjct: 62  FPASELARISKLIENKMSEGKKEELQRSLNILTAF 96

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 13/120 (10%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANL 199
           +  V L   +F++ V ++    +V+F        K     +   + +      D+++A +
Sbjct: 2   TGCVDLDELSFEKTV-ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATV 58

Query: 200 DADKY-----KDLAEKYG--VSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCG 250
               Y     K L ++Y      FP++  F     +           L++  +F++    
Sbjct: 59  GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 118

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 12/117 (10%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCD 83
            V L E +FEK V +   ++V+F        K     +     S  KA K +LI  V   
Sbjct: 4   CVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVK 61

Query: 84  E-----HKSLCSKYG--VQGYPTIQWFPKGSLEPK--KYEGPRSTEALAEYVNNEGG 131
           +     +K+L  +Y    + +P+I  F   + E          + + L  +V+    
Sbjct: 62  DYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 118

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.4 bits (242), Expect = 2e-25
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG---- 78
              + L    F K + + +  LV+F   +    K    E+++L  +   +  +L+     
Sbjct: 4   KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGI 61

Query: 79  -KVDCDEHKSLCSKY--GVQGYPTIQWFPKGSL-EPKKYEGPRSTEALAEYVNNEG 130
                  +  L  KY    + YP    F  G    P  Y G     A+  ++  +G
Sbjct: 62  SDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG 117

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.5 bits (237), Expect = 8e-25
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 7/114 (6%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHC-----KNLAPTYEKVAAAFTLEDDVV 195
              + L    F +++  KSK VLV+F   +         K LA            E  + 
Sbjct: 4   KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGIS 62

Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK 248
                 +       K     +P    F  G+  +   Y G   +     ++  +
Sbjct: 63  DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 92.6 bits (229), Expect = 9e-24
 Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
             V V+ A N++EIVLD +KDVL+EFYAPWCGHCK LAP YE++ A +   +      + 
Sbjct: 2   GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 61

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINE 247
                       + GFPT+K +P G K     Y G R +ED + FI E
Sbjct: 62  KVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 109

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 78.3 bits (192), Expect = 1e-18
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 24  DVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
            V V+   N+ + V    +  L+EFYAPWCGHCK LAP+YE+LGA + K++      +  
Sbjct: 3   PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAK 62

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNEGG 131
            +  +      +QG+PTI+ +P G+  +P  Y G R+ E L +++   G 
Sbjct: 63  VDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 112

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (229), Expect = 2e-23
 Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
           S+V  L   N DEIV D  KDVLV +YAPWCGHCK LAPTY+++A  +      V+    
Sbjct: 12  SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIA-K 70

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTSRDGK 256
            D  ++      + G+PT+  +P G K +   Y G R L+    FI E      DGK
Sbjct: 71  LDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGK 127

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (179), Expect = 2e-16
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 23  DDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVD 81
             V  L   N ++ V    +  LV +YAPWCGHCK+LAP Y++L  ++  A S ++    
Sbjct: 12  SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVL-IAK 70

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNEGGTNVKIAAV 139
            D  ++      ++GYPTI  +P G   E   Y+G RS ++L +++   G  +V   A+
Sbjct: 71  LDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKAL 129

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 3e-23
 Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANL 199
            +V+VL   NF E  L   K +LVEFYAPWCGHCK LAP Y K A     E  ++ +A +
Sbjct: 7   DHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65

Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS 252
           DA +  DLA++YGV G+PT+KFF  G+    +EY  GR+ +D V+++ ++ G +
Sbjct: 66  DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 1e-19
 Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGAS-FKKAKSVLIGKVD 81
           D V+VL + NF + +   +  LVEFYAPWCGHCK LAPEY K       +   + + KVD
Sbjct: 7   DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVN 127
             E   L  +YGV+GYPTI++F  G    PK+Y   R  + +  ++ 
Sbjct: 67  ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLK 113

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 86.8 bits (214), Expect = 8e-22
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 201
            ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +     + VA L+ 
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNI 60

Query: 202 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           D+    A KYG+ G PTL  F  G        G         F++ 
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVA-ATKVGALSKGQLKEFLDA 105

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 82.9 bits (204), Expect = 3e-20
 Identities = 32/107 (29%), Positives = 60/107 (56%), Gaps = 4/107 (3%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +D ++ LT+D+F+ +V + D   LV+F+A WCG CK +AP  +++  + +    + + K+
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEI--ADEYQGKLTVAKL 58

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           + D++     KYG++G PT+  F  G        G  S   L E+++
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSKGQLKEFLD 104

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 85.3 bits (210), Expect = 5e-21
 Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA------KSVL 76
           D V+ +   N++    +     + ++ P          ++E      + A      K V 
Sbjct: 11  DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDKGVG 69

Query: 77  IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
            G VD ++  ++  K G+    +   +     E  +Y+G  S + L E++ +
Sbjct: 70  FGLVDSEKDAAVAKKLGLTEEDS--IYVFKEDEVIEYDGEFSADTLVEFLLD 119

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 82.6 bits (203), Expect = 5e-20
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL------EDDV 194
             V+ + A N+   V  K + + + ++ P           +E       L      +  V
Sbjct: 11  DRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKA-SQRQFEMEELILELAAQVLEDKGV 68

Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
               +D++K   +A+K G++   ++  F +      EY G    +  V F+ +
Sbjct: 69  GFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV--IEYDGEFSADTLVEFLLD 119

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 83.7 bits (206), Expect = 1e-20
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 200
             V+ +T   F+  VL   + VLV F+A WCG C+ ++P     A  +   D + V  L+
Sbjct: 2   KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY--SDRLKVVKLE 59

Query: 201 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
            D      +KY V G P L+   KG +  +   G    +  +SF++ 
Sbjct: 60  IDPNPTTVKKYKVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDT 105

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 71.0 bits (173), Expect = 5e-16
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +  V+ +T+  FE EV + ++  LV F+A WCG C+ ++P       ++     V+  ++
Sbjct: 1   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 60

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
           D   + +   KY V+G P ++            EG  S + L  +++ 
Sbjct: 61  DP--NPTTVKKYKVEGVPALRLVKGEQ-ILDSTEGVISKDKLLSFLDT 105

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 81.9 bits (201), Expect = 5e-20
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
              +  D F  +VL+ S  VLV+F+APWCG C+ +AP  +++A  +  +   V   L+ D
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCV--KLNTD 60

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +  ++A +YG+   PT+  F  G K  E   G       V  + +
Sbjct: 61  ESPNVASEYGIRSIPTIMVFKGGKKC-ETIIGAVPKATIVQTVEK 104

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 71.5 bits (174), Expect = 3e-16
 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
              + +D F+  V +     LV+F+APWCG C+ +AP  +++  + +    +   K++ D
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEI--AGEYKDKLKCVKLNTD 60

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           E  ++ S+YG++  PTI  F  G  + +   G      + + V 
Sbjct: 61  ESPNVASEYGIRSIPTIMVFKGGK-KCETIIGAVPKATIVQTVE 103

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.5 bits (200), Expect = 1e-19
 Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 3/116 (2%)

Query: 136 IAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 195
           +A   S VV L  D+F+E  +     VL EF+APWCGHCKN+AP Y K A     E ++ 
Sbjct: 5   VAPEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV-EKNIT 62

Query: 196 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCG 250
           +A +D  + +DL  ++ + GFP+LK F   +  +  +Y G R  E  V F+ ++  
Sbjct: 63  LAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 118

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.4 bits (166), Expect = 5e-15
 Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 82
             VV L  D+F + +      L EF+APWCGHCK +APEY K   +  +     + ++DC
Sbjct: 10  SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNIT-LAQIDC 68

Query: 83  DEHKSLCSKYGVQGYPTIQWFPKGSL-EPKKYEGPRSTEALAEYVNNEGG 131
            E++ LC ++ + G+P+++ F    +     YEGPR+ EA+ +++  +  
Sbjct: 69  TENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 118

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 6e-19
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 12/125 (9%)

Query: 147 TADNFDE-IVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 205
                D+ I+ ++ + V++ F   W   C  +      +A    +++  V+  +D  +  
Sbjct: 9   NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAE--KVKNFAVIYLVDITEVP 66

Query: 206 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG---------RDLEDFVSFINEKCGTSRDGK 256
           D  + Y +    T+ FF +      + G G          D ++ V  I      +R G+
Sbjct: 67  DFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGR 126

Query: 257 GQLTS 261
           G + S
Sbjct: 127 GLVVS 131

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 29  TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 86
                ++ +   +DR  ++ F   W   C K+      +    K     +I  VD  E  
Sbjct: 9   NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFA--VIYLVDITEVP 66

Query: 87  SLCSKYGVQGYPTIQWFPKG 106
                Y +    T+ +F + 
Sbjct: 67  DFNKMYELYDPCTVMFFFRN 86

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 78.5 bits (193), Expect = 1e-18
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 145 VLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
            + A   D+ +       +L+           +      ++   F  + D  VA  D ++
Sbjct: 15  PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP-QFDWQVAVADLEQ 73

Query: 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
            + + +++ V  FP    F  G   G    G     + ++ +  
Sbjct: 74  SEAIGDRFNVRRFPATLVFTDGKLRG-ALSGIHPWAELLTLMRS 116

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 74.6 bits (183), Expect = 3e-17
 Identities = 10/110 (9%), Positives = 29/110 (26%), Gaps = 4/110 (3%)

Query: 20  ALADDVVVLTEDNFEKEVGQDRGALV--EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLI 77
            L      +     +  + +    ++                    +L   F +     +
Sbjct: 8   LLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQ-V 66

Query: 78  GKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
              D ++ +++  ++ V+ +P    F  G        G      L   + 
Sbjct: 67  AVADLEQSEAIGDRFNVRRFPATLVFTDGK-LRGALSGIHPWAELLTLMR 115

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 75.6 bits (185), Expect = 9e-18
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
            + LT  NF +  +   K VLV+F+A WCG C+ +AP  E+ A      D V VA L+ D
Sbjct: 2   TMTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFA--EAHADKVTVAKLNVD 58

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +  +   ++G+   PTL  F  G    ++  G +  E   + + +
Sbjct: 59  ENPETTSQFGIMSIPTLILFKGGEPV-KQLIGYQPKEQLEAQLAD 102

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
            + LT+ NF++ +  D+  LV+F+A WCG C+ +AP  E+   +   A  V + K++ DE
Sbjct: 2   TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEE--FAEAHADKVTVAKLNVDE 59

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
           +    S++G+   PT+  F  G    K+  G +  E L   + +
Sbjct: 60  NPETTSQFGIMSIPTLILFKGGE-PVKQLIGYQPKEQLEAQLAD 102

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 75.9 bits (186), Expect = 1e-17
 Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 3/104 (2%)

Query: 145 VLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
            ++    D+ +       VL+           +      ++   F  +    VA  D ++
Sbjct: 21  PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-DYTWQVAIADLEQ 79

Query: 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
            + + +++GV  FP    F  G        G     + ++ +  
Sbjct: 80  SEAIGDRFGVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRG 122

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 75.1 bits (184), Expect = 3e-17
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 4/111 (3%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRGALV--EFYAPWCGHCKKLAPEYEKLGASFKKAKSVL 76
             LA     ++E   +  + Q    +V                    +L   F    +  
Sbjct: 13  RMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREF-PDYTWQ 71

Query: 77  IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           +   D ++ +++  ++GV  +P    F  G        G      L   + 
Sbjct: 72  VAIADLEQSEAIGDRFGVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMR 121

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 72.8 bits (178), Expect = 7e-17
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 162 VLVE-FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 220
           V +E F +P C +C       ++    F  + DV   ++  D+    A +YG+   P + 
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE--KAIEYGLMAVPAIA 60

Query: 221 FFPKGNKDGEEYGGGRDLEDFVSFINEK 248
                      + G    E+    IN++
Sbjct: 61  INGVV-----RFVGAPSREELFEAINDE 83

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 70.1 bits (171), Expect = 6e-16
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 47  FYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 106
           F +P C +C       ++  A  +    + + K+D    +    +YG+   P I      
Sbjct: 8   FTSPTCPYCPMAIEVVDE--AKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGVV 65

Query: 107 SLEPKKYEGPRSTEALAEYVN 127
                ++ G  S E L E +N
Sbjct: 66  -----RFVGAPSREELFEAIN 81

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 70.7 bits (172), Expect = 5e-16
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           V  +   ++ E VL+    V+V+F+APWCG CK +AP  +++A  ++    + V  L+ D
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTD 58

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           +   +A +Y +   PT+ FF  G +  E   G          I +
Sbjct: 59  EAPGIATQYNIRSIPTVLFFKNGERK-ESIIGAVPKSTLTDSIEK 102

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 61.5 bits (148), Expect = 1e-12
 Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           V  + + ++++ V + +   +V+F+APWCG CK +AP  ++L    + +  + + K++ D
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAK--EYSGKIAVYKLNTD 58

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           E   + ++Y ++  PT+ +F  G    +   G      L + + 
Sbjct: 59  EAPGIATQYNIRSIPTVLFFKNGE-RKESIIGAVPKSTLTDSIE 101

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 136 IAAVPSNVVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 194
           + A+   V  +  D F  IV     K V+++ +  WCG CK +AP YEK+  A    D +
Sbjct: 1   MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKL--AEEYLDVI 58

Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 247
            +      + K LA++ G+   PT K      K+    G   G   +  +  I  
Sbjct: 59  FLKLDCNQENKTLAKELGIRVVPTFKIL----KENSVVGEVTGAKYDKLLEAIQA 109

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 61.7 bits (149), Expect = 1e-12
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 18  VSALADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSV 75
           + A+   V  + +D F   V    D+  +++ +  WCG CK +AP+YEK   + +    +
Sbjct: 1   MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK--LAEEYLDVI 58

Query: 76  LIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
            +      E+K+L  + G++  PT +   + S    +  G +  + L E + 
Sbjct: 59  FLKLDCNQENKTLAKELGIRVVPTFKILKENS-VVGEVTGAKY-DKLLEAIQ 108

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 1e-13
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 144 VVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
            V +  +F   +    S+  +V+F    CG C  +AP +  +          V   +D  
Sbjct: 5   PVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSM---SNKYPQAVFLEVDVH 61

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 247
           + +  A    +S  PT +FF    ++        G D       I +
Sbjct: 62  QCQGTAATNNISATPTFQFF----RNKVRIDQYQGADAVGLEEKIKQ 104

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 3e-11
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 26  VVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
            V ++ +F+ E+     R A+V+F    CG C ++AP +        K    +  +VD  
Sbjct: 5   PVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSS---MSNKYPQAVFLEVDVH 61

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           + +   +   +   PT Q+F        +Y+G      L E + 
Sbjct: 62  QCQGTAATNNISATPTFQFFRNKV-RIDQYQG-ADAVGLEEKIK 103

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 5e-13
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 6/104 (5%)

Query: 145 VLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           + +   F E +     K V+V+F A WCG CK + P +  ++  +    +V+   +D D 
Sbjct: 5   IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDD 61

Query: 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
            +D+A +  V   PT +FF KG K GE    G + E   + INE
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQKVGEF--SGANKEKLEATINE 103

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 27  VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           + ++  F++ +    D+  +V+F A WCG CK + P +  L   +         +VD D+
Sbjct: 5   IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI---FLEVDVDD 61

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
            + + S+  V+  PT Q+F KG  +  ++ G  + E L   +N
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQ-KVGEFSG-ANKEKLEATIN 102

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 59.9 bits (144), Expect = 4e-12
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKV--AAAFTLEDDVVVANLDADK 203
           L  +    I        ++ F  P C +C        K         +  ++   ++A +
Sbjct: 2   LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 61

Query: 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
           Y + A++Y V   P +     G +D  E+ G    + F+  +  
Sbjct: 62  YPEWADQYNVMAVPKIVIQVNG-EDRVEFEGAYPEKMFLEKLLS 104

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 59.2 bits (142), Expect = 8e-12
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 4/104 (3%)

Query: 28  LTEDNFEKEVGQDRGALVE-FYAPWCGHCKKLAPEYEKL--GASFKKAKSVLIGKVDCDE 84
           L ++  +     D+   +  F  P C +C        K     +      +L   V+  E
Sbjct: 2   LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 61

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
           +     +Y V   P I     G  +  ++EG    +   E + +
Sbjct: 62  YPEWADQYNVMAVPKIVIQVNGE-DRVEFEGAYPEKMFLEKLLS 104

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 59.8 bits (144), Expect = 6e-12
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 141 SNVVVL-TADNFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
            +V+V+ +   +D  +    ++ K ++V+F A WCG CK +AP +E +  +      V+ 
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETL--SNDYAGKVIF 59

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
             +D D    +AE  G++  PT   +  G K  +    G   +   + + +
Sbjct: 60  LKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDL--VGASQDKLKALVAK 108

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 25  VVVLTEDNFEKEVGQ----DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +V+ ++  ++ ++ +     +  +V+F A WCG CK +AP +E L   +     V+  KV
Sbjct: 5   IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA--GKVIFLKV 62

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           D D   ++    G+   PT   +  G  +     G  S + L   V 
Sbjct: 63  DVDAVAAVAEAAGITAMPTFHVYKDGV-KADDLVG-ASQDKLKALVA 107

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 13/116 (11%)

Query: 138 AVPSNVV-VLTADNFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD 193
           A    V+   T D + E         K ++V+F A WC  CK +AP + ++A  F    +
Sbjct: 1   AEEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PN 57

Query: 194 VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG--GGRDLEDFVSFINE 247
           V    +D D+ K +AE++ V   PT  F     KDG+      G D +   + + +
Sbjct: 58  VTFLKVDVDELKAVAEEWNVEAMPTFIFL----KDGKLVDKTVGADKDGLPTLVAK 109

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL 88
            +++FEK  G  +  +V+F A WC  CK +AP + +L   F         KVD DE K++
Sbjct: 15  WKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVT---FLKVDVDELKAV 71

Query: 89  CSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
             ++ V+  PT  +   G  +          + L   V 
Sbjct: 72  AEEWNVEAMPTFIFLKDG--KLVDKTVGADKDGLPTLVA 108

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 57.9 bits (139), Expect = 2e-11
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 144 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 203
           +V +   FD  ++ +++ V+V+F+A WCG CK +AP YE+ +  +     +V   +D D+
Sbjct: 4   IVTSQAEFDS-IISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVDVDE 59

Query: 204 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 247
             ++ EK  ++  PT K +    K+G       G +       I +
Sbjct: 60  VSEVTEKENITSMPTFKVY----KNGSSVDTLLGANDSALKQLIEK 101

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 85
           +V ++  F+  + Q+   +V+F+A WCG CK++AP YE+   ++ K       KVD DE 
Sbjct: 4   IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV---FIKVDVDEV 60

Query: 86  KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
             +  K  +   PT + +  GS       G     AL + + 
Sbjct: 61  SEVTEKENITSMPTFKVYKNGS-SVDTLLGAND-SALKQLIE 100

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 56.9 bits (136), Expect = 4e-11
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 218
           SK  +  F +P C HC       E+VA       +V   N+  +  K    +YG+   PT
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKA--MEYGIMAVPT 59

Query: 219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248
           +           E+ G    E  V  I ++
Sbjct: 60  IVINGDV-----EFIGAPTKEALVEAIKKR 84

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 53.8 bits (128), Expect = 3e-10
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
           +  F +P C HC       E+   + +   +V +  ++  E+     +YG+   PTI   
Sbjct: 6   IELFTSPMCPHCPAAKRVVEE--VANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVIN 63

Query: 104 PKGSLEPKKYEGPRSTEALAEYVN 127
                   ++ G  + EAL E + 
Sbjct: 64  GDV-----EFIGAPTKEALVEAIK 82

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 57.2 bits (137), Expect = 5e-11
 Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 4/106 (3%)

Query: 142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANL 199
           ++ V T     E  LDK +          C +C+  A T   V A     +         
Sbjct: 10  DLEVTTVVRAQE-ALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPS 68

Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 245
             +  +    +YG+   P       G +           ++   F 
Sbjct: 69  QLNDLQAFRSRYGIPTVPGFVHITDG-QINVRCDSSMSAQEIKDFA 113

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 54.9 bits (131), Expect = 3e-10
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK--AKSVLIGKVD 81
           D+ V T    ++ + +   A        C +C+K A     + A  K             
Sbjct: 10  DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQ 69

Query: 82  CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 126
            ++ ++  S+YG+   P       G     + +   S + + ++ 
Sbjct: 70  LNDLQAFRSRYGIPTVPGFVHITDGQ-INVRCDSSMSAQEIKDFA 113

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

 Score = 57.3 bits (137), Expect = 5e-11
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 145 VLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN----L 199
           + T D  ++ +++ K K V+++ YA WC  CK                 D V+       
Sbjct: 7   IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 66

Query: 200 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG--GGRDLEDFVSFINEK 248
           +  +   L +   V G PT+ FF    ++  +    G  D E F + + ++
Sbjct: 67  NDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 117

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 56.8 bits (136), Expect = 7e-11
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 137 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
           A  PS V V + + F   ++ +    +  F A WCG CK +    EK+         V  
Sbjct: 5   ARYPSVVDVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEKI---AYEFPTVKF 60

Query: 197 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 247
           A +DAD   ++  K  V   PT        + G+  G   G +       + +
Sbjct: 61  AKVDADNNSEIVSKCRVLQLPTFIIA----RSGKMLGHVIGANPGMLRQKLRD 109

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 84
           V V + + F   + +D   +  F A WCG CK +    EK      +  +V   KVD D 
Sbjct: 11  VDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEK---IAYEFPTVKFAKVDADN 67

Query: 85  HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG---PRSTEALAEYVNN 128
           +  + SK  V   PT      G        G       + L + + +
Sbjct: 68  NSEIVSKCRVLQLPTFIIARSGK-MLGHVIGANPGMLRQKLRDIIKD 113

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.8 bits (136), Expect = 8e-11
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 136 IAAVPSNVV-VLTADNFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE 191
           +A+    V+   T + ++E +    +    V+V+F A WCG C+ +AP +  +A      
Sbjct: 1   MASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNV 60

Query: 192 DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG--GGRDLEDFVSFINE 247
             + V   D D+ K +A  + +   PT  F     K+G+      G   ++  S I +
Sbjct: 61  LFLKV---DTDELKSVASDWAIQAMPTFMFL----KEGKILDKVVGAKKDELQSTIAK 111

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.3 bits (114), Expect = 6e-08
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 25  VVVLTEDNFEKEVGQ----DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV 80
           +   T + + +++ +        +V+F A WCG C+ +AP +       KK  +VL  KV
Sbjct: 9   IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFAD---LAKKLPNVLFLKV 65

Query: 81  DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           D DE KS+ S + +Q  PT  +  +G     K  G +  + L   + 
Sbjct: 66  DTDELKSVASDWAIQAMPTFMFLKEGK-ILDKVVGAKK-DELQSTIA 110

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 20/117 (17%), Positives = 30/117 (25%), Gaps = 18/117 (15%)

Query: 143 VVVLTADNFDEIVLD-KSKDVLVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDV 194
           V V   + F   V     K +   F          WC  C    P   +      + +  
Sbjct: 4   VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVRE--GLKHISEGC 61

Query: 195 VVANLDADKYKDL-------AEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL-EDFVS 243
           V       +            +   V+  PTL  +    K  E      +L E   S
Sbjct: 62  VFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS 118

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 9e-08
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 18/100 (18%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFY---------APWCGHCKKLAPEYEKLGASFKKAK 73
           ++V V   + F + V Q  G  +  Y           WC  C +  P   +       ++
Sbjct: 2   EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREG--LKHISE 59

Query: 74  SVLIGKVDCDEHKSLC-------SKYGVQGYPTIQWFPKG 106
             +       E                V   PT+  +   
Sbjct: 60  GCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTP 99

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.8 bits (128), Expect = 6e-10
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 137 AAVPSNVV-VLTADNFDEIVLDKS-KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 194
           AA  + V  V    + D  +   S K V+++F+A WCG CK ++P   ++  +    D+V
Sbjct: 1   AAAAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVEL--STQFADNV 58

Query: 195 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFV 242
           VV  +D D+ +D+A +Y +S  PT  F   G K  E  G   + LED +
Sbjct: 59  VVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVI 107

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 26/111 (23%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRG--ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVL 76
           +A A    V  + + + ++ +  G   +++F+A WCG CK ++P+  +L   F    +V+
Sbjct: 2   AAAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVV 59

Query: 77  IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 127
           + KVD DE + +  +Y +   PT  +   G  + +++ G  + + L + + 
Sbjct: 60  VLKVDVDECEDIAMEYNISSMPTFVFLKNGV-KVEEFAGANA-KRLEDVIK 108

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (126), Expect = 1e-09
 Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 10/102 (9%)

Query: 151 FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 210
            +    +++  VL  F    C  C       +     F L+      ++   +     E+
Sbjct: 7   GNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQ----EVDITLPENSTWYER 62

Query: 211 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 252
           Y         F   G           +       + +  G S
Sbjct: 63  YKFD---IPVFHLNG---QFLMMHRVNTSKLEKQLRKLSGPS 98

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 10/84 (11%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
           L  F    C  C +     +     F     +    +   E+ +   +Y     P     
Sbjct: 19  LTLFTKAPCPLCDEAKEVLQPYKDRFI----LQEVDITLPENSTWYERYKFD-IPVFHLN 73

Query: 104 PKGSLEPKKYEGPRSTEALAEYVN 127
            +            +T  L + + 
Sbjct: 74  GQ-----FLMMHRVNTSKLEKQLR 92

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 12/111 (10%)

Query: 145 VLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 202
           + T + F E +  + K   ++V  Y      C  L  + E +AA +     V    + A 
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY---PMVKFCKIRAS 160

Query: 203 KYKDLAEKYGVSGFPTLKFFPKGNKDG-----EEYGGGR-DLEDFVSFINE 247
                 +++     PTL  +  G          E         D  SF+NE
Sbjct: 161 -NTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNE 210

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 9e-07
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 7/85 (8%)

Query: 27  VLTEDNFEKEV---GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 83
           + T + F + +    +    +V  Y      C  L    E L A +   K     K+   
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFC---KIRAS 160

Query: 84  EHKSLCSKYGVQGYPTIQWFPKGSL 108
                  ++     PT+  +  G L
Sbjct: 161 NTG-AGDRFSSDVLPTLLVYKGGEL 184

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 51.3 bits (122), Expect = 4e-09
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 217
                   +Y+  C +C ++      +A    L   +    +D   +++   +  V G P
Sbjct: 14  DGDFEFETYYSLSCHNCPDVVQALNLMAV---LNPRIKHTAIDGGTFQNEITERNVMGVP 70

Query: 218 TLKFFPKGNKDGEE-YGGGRDLEDFVSFI 245
            +        +G+E   G   L + V+ +
Sbjct: 71  AVFV------NGKEFGQGRMTLTEIVAKV 93

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 45.9 bits (108), Expect = 3e-07
 Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
              +Y+  C +C  +      +         +    +D    ++  ++  V G P +   
Sbjct: 19  FETYYSLSCHNCPDVVQALNLMA---VLNPRIKHTAIDGGTFQNEITERNVMGVPAVFVN 75

Query: 104 PKGSLEPKKYEGPRSTEALAEYV 126
            K     +  +G  +   +   V
Sbjct: 76  GK-----EFGQGRMTLTEIVAKV 93

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 153 EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY- 211
           +        ++V  +  WCG CK L P + +      L  + V+ NL+ ++     +   
Sbjct: 19  KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP 78

Query: 212 GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
                P + F     K   E         +  F   
Sbjct: 79  DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVS 114

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC 89
           ED  ++        +V  +  WCG CK L P++ +     + + + ++  ++ +E     
Sbjct: 15  EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDE 74

Query: 90  SKY-GVQGYPTIQWFPKGSLEPKKYEGPRS 118
                    P I +         +      
Sbjct: 75  DFSPDGGYIPRILFLDPSGKVHPEIINENG 104

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 49.1 bits (116), Expect = 6e-08
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 35/141 (24%)

Query: 139 VPSNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
           VP  +  L   +     +   KD   L++F+A WC  C +     EK A         ++
Sbjct: 1   VPHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLI 60

Query: 197 A---------------------------NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 229
                                        +  D    +A+   +S +P+        KDG
Sbjct: 61  TVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALI---GKDG 117

Query: 230 EE---YGGGRDLEDFVSFINE 247
           +      G  +    ++ I +
Sbjct: 118 DVQRIVKGSINEAQALALIRD 138

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 27/117 (23%)

Query: 39  QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG-------------------- 78
           +D+  L++F+A WC  C     + EK     K + + LI                     
Sbjct: 22  KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYA 81

Query: 79  -------KVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 128
                   V  D   ++     +  YP+     K     +  +G  +       + +
Sbjct: 82  GLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRD 138

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 27/136 (19%)

Query: 139 VPSNVVVLTADNFDEIVLD--KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
           +P         N +         K  L+ F++  C  CK   P   +    +  + +VV 
Sbjct: 7   MPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVA 66

Query: 197 ANL-------------------------DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 231
            ++                           D    L + +     P    F K  +    
Sbjct: 67  VHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF 126

Query: 232 YGGGRDLEDFVSFINE 247
             GG  ++     +N 
Sbjct: 127 QAGGSGMKMLEKRVNR 142

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 25/125 (20%)

Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV------- 80
           L  +   +++  ++  L+ F++  C  CK+  P+  +    ++   +V+   +       
Sbjct: 17  LNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDL 76

Query: 81  ------------------DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 122
                               D   +L   +  +  P    F K         G    + L
Sbjct: 77  DPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKML 136

Query: 123 AEYVN 127
            + VN
Sbjct: 137 EKRVN 141

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 8/104 (7%), Positives = 28/104 (26%), Gaps = 3/104 (2%)

Query: 145 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 204
            L +   + +   + +  L+     WC  C+      +         +  ++      + 
Sbjct: 40  GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAII---SKGRA 96

Query: 205 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 248
           +D   +        +      +++    G   +    V     +
Sbjct: 97  EDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQ 140

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 5/61 (8%), Positives = 12/61 (19%), Gaps = 3/61 (4%)

Query: 44  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 103
           L+     WC  C+      +         +      +     +    +        I   
Sbjct: 58  LLVAGEMWCPDCQINLAALDFAQRLQPNIELA---IISKGRAEDDLRQRLALERIAIPLV 114

Query: 104 P 104
            
Sbjct: 115 L 115

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 21/129 (16%), Positives = 32/129 (24%), Gaps = 28/129 (21%)

Query: 140 PSNVVVLTADNFDEIVLD--KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 197
           P +  VL      +I L     K V   F A WC   +   P       A   + +  V 
Sbjct: 8   PYSTNVLKGAA-ADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVM 66

Query: 198 NLDADKYKD------------------------LAEKYGVSGFPTLKFF-PKGNKDGEEY 232
            +  D+  +                        L   + V   PTL              
Sbjct: 67  LISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQ 126

Query: 233 GGGRDLEDF 241
                ++D 
Sbjct: 127 ARTMVVKDP 135

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 18/115 (15%)

Query: 151 FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL------------------ED 192
           +   VL + K VL+  +A WC   +       +++A                      E 
Sbjct: 12  YQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL 71

Query: 193 DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 247
               A    D    L    GV G P              + G  +   +   I  
Sbjct: 72  GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP 126

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 29/129 (22%)

Query: 139 VPSNVVVLTADNFDEIVLD--KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 196
           +P    +L+     E+ L     K V + F A WC  C+   P   +      +  +  V
Sbjct: 8   LPGATNLLSKSG--EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEV 65

Query: 197 ANLDADKYKD------------------------LAEKYGVSGFPTLKFF-PKGNKDGEE 231
             +  D+ +                         L + +GV   PTL             
Sbjct: 66  VLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGT 125

Query: 232 YGGGRDLED 240
               R +ED
Sbjct: 126 QARTRVIED 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.91
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.91
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.9
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.9
d2c0ga1	106	Windbeutel, C-terminal domain {Fruit fly (Drosophi	99.9
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.9
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.9
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.9
d1g7da_	106	Endoplasmic reticulum protein ERP29, C-terminal do	99.9
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.9
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.89
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.89
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.89
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.89
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.88
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.88
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.87
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.87
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.86
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.86
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.86
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.85
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.85
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.84
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.83
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.83
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.83
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.83
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.83
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.82
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.82
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.82
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.82
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.82
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.82
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.81
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.81
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.81
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.81
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.81
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.81
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.81
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.8
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.79
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.77
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.77
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.77
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.77
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.76
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.76
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.75
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.75
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.74
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.73
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.73
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.7
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.68
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.68
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.67
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.66
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.66
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.62
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.47
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.41
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.41
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.4
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.39
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.37
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.36
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.34
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.33
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.33
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.33
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.31
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.3
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.3
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.29
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.28
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.28
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.27
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.26
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.26
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.25
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.22
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.21
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.2
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.19
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.16
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.12
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.1
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.08
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.07
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.97
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.9
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.85
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.77
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.47
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.31
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.3
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.22
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.15
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.14
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.12
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.12
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.12
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.11
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.05
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.05
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.04
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.03
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.99
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.98
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.97
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.95
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.93
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.92
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	97.91
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.9
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.89
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	97.83
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.82
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.82
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.82
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.8
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.75
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.73
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.7
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.7
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.69
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.67
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.66
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.57
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.56
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.54
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.53
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.49
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.45
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.4
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.4
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.4
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.34
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.34
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.32
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.3
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.28
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.23
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.14
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.1
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.09
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.01
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.99
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.98
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.96
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	96.94
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	96.9
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.86
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	96.85
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.84
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.84
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	96.81
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.8
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.79
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.78
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.7
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.69
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.67
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	96.62
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	96.62
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.53
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	96.5
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.45
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.19
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	96.15
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.14
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	95.76
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.72
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	95.7
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	95.51
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.41
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	95.24
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	94.99
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	94.85
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	94.32
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	92.06
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	92.05
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	91.81
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	91.75
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	91.04
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	88.32
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	84.87
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	83.53
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	82.77
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	81.86

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.5e-24  Score=163.48  Aligned_cols=112  Identities=37%  Similarity=0.732  Sum_probs=101.5

Q ss_pred             CCCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          138 AVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       138 ~~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      +..+.+++++.++|++++ ..++.++|.||+|||++|+.+.|.|+++++.+.. .++.++.||++++.+++.+|+|.++|
T Consensus         7 ~~~s~v~~lt~~~f~~~i-~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~P   84 (119)
T d2b5ea4           7 PEDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFP   84 (119)
T ss_dssp             CTTSSCEECCTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCCCccEEcCHHHHHHHH-hcCCeEEEEEECCccCcccccchhhhhhhhhhcc-cceeeeeeeccchHHHHHHhccccCC
Confidence            356679999999999988 6788999999999999999999999999999863 57999999999999999999999999


Q ss_pred             EEEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcCC
Q 018270          218 TLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       218 ti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      |+++|++|.. ....|.|.++.++|++||++++++
T Consensus        85 ti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          85 SLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             eEEEEECCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            9999998865 567799999999999999998764

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.9e-24  Score=161.86  Aligned_cols=111  Identities=33%  Similarity=0.790  Sum_probs=100.0

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      ..+.|.++|.++|+++++++++++|+||++||++|+.+.|.|+++++.+.+ +.+.++.|||+++.++|.+|+|.++||+
T Consensus         8 ~~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pti   86 (119)
T d2b5ea4           8 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFPSL   86 (119)
T ss_dssp             TTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcc-cceeeeeeeccchHHHHHHhccccCCeE
Confidence            456799999999999999999999999999999999999999999999864 4699999999999999999999999999


Q ss_pred             EEccCCCCC-cccccCCCCHHHHHHHHhccCCC
Q 018270          101 QWFPKGSLE-PKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       101 ~~~~~~~~~-~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      ++|.+|... ...|.|.++.++|.+||.+.++|
T Consensus        87 ~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          87 KIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EEEETTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             EEEECCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            999876433 45789999999999999987653

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.90  E-value=1.2e-23  Score=156.88  Aligned_cols=106  Identities=27%  Similarity=0.547  Sum_probs=97.2

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      ..|.++|+.+|++.+.+.+++++|.||++||++|+.+.|.|++++..+.  +.+.++.+|++++++++++|+|+++||++
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~   79 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS--DRLKVVKLEIDPNPTTVKKYKVEGVPALR   79 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT--TTCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcC--CcceeceecccccHHHHHHhcccCCCEEE
Confidence            3588999999999877788999999999999999999999999999885  56899999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +|++| +...++.|.++.++|.+||++++
T Consensus        80 ~~~~g-~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          80 LVKGE-QILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECC-EEEEEEeCCCCHHHHHHHHHHhc
Confidence            99976 56778999999999999999875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.90  E-value=1.2e-23  Score=155.87  Aligned_cols=104  Identities=29%  Similarity=0.611  Sum_probs=95.7

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      |.++|+.+|++.+.+++++++|.||++||++|+.+.|.+.++++.+.  +.+.++.+|++++++++++|+|+++||+++|
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~--~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhc--CccceeEEecccchhhhhhcceeeeeEEEEE
Confidence            56899999999998888999999999999999999999999999985  5688999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++| +...++.|.++.+.|.+||++++
T Consensus        79 ~~G-~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          79 KNG-ERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             ETT-EEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EcC-eEEEEEeCCCCHHHHHHHHHHhC
Confidence            876 56778999999999999998863

>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: ERP29 C domain-like
superfamily: ERP29 C domain-like
family: ERP29 C domain-like
domain: Windbeutel, C-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=3.6e-24  Score=154.28  Aligned_cols=96  Identities=23%  Similarity=0.432  Sum_probs=91.3

Q ss_pred             ccchhhHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhc-chhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhccCCh
Q 018270          263 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEG-STARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISA  341 (358)
Q Consensus       263 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~  341 (358)
                      +|+++++|.++.+|+..+++++.+++.++++.++.+++ .++++++||+++|+||+++|++|+.+|++||++||++++++
T Consensus         2 ~G~i~~~D~La~eF~~a~~~er~~ll~k~~~~~~~l~~~~~~~~a~~Yvkvm~KIl~~g~~fv~~E~~RL~~ll~g~~s~   81 (106)
T d2c0ga1           2 DGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVTE   81 (106)
T ss_dssp             TTCCHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHTSSCCH
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCCH
Confidence            68999999999999999999999999999999999986 56789999999999999999999999999999999999999


Q ss_pred             hhhhhhHHhhhhhcccC
Q 018270          342 AKADEFVLKKNILSTFT  358 (358)
Q Consensus       342 ~~~~~~~~~~nil~~f~  358 (358)
                      +|+|+|+.|+|||++|.
T Consensus        82 ~K~del~~r~NIL~~F~   98 (106)
T d2c0ga1          82 AKKEELLRKLNILEVFR   98 (106)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999994

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.6e-24  Score=161.61  Aligned_cols=112  Identities=45%  Similarity=0.906  Sum_probs=101.5

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      .+.|..++.++|++.+ .+++.++|.||++||++|+.+.|.|.++++.+... .++.++.||++.+..++++|+|.++||
T Consensus         6 ~~~V~~l~~~~f~~~l-~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   84 (120)
T d1meka_           6 EDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCeEEcCHHHHHHHH-hcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCe
Confidence            4568899999999987 67899999999999999999999999999998643 479999999999999999999999999


Q ss_pred             EEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcCCC
Q 018270          219 LKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       219 i~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +++|++|+. ....|.|.++.++|.+||++++|+.
T Consensus        85 ~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEEECCeEeeeEEecCCCCHHHHHHHHHHhhCCC
Confidence            999998865 4578999999999999999988864

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.8e-23  Score=156.08  Aligned_cols=106  Identities=33%  Similarity=0.666  Sum_probs=97.4

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      +.+.++|+++|++.+.+.+++++|.|||+||+||+.+.|.+.+++..+.  .++.++.+|+++++.++++|+|.++||++
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~vd~d~~~~l~~~~~v~~~PT~~   79 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhh--cceeeeeccccchhhHHHHhCCCcEEEEE
Confidence            4688999999999877888999999999999999999999999999874  67999999999999999999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +|++| +...++.|.++.+.|.+||++++
T Consensus        80 ~~~~G-~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          80 LFKNG-EVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECC-EEEEEEeCCCCHHHHHHHHHHhc
Confidence            99876 56778999999999999998864

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.90  E-value=1.1e-23  Score=157.25  Aligned_cols=105  Identities=25%  Similarity=0.517  Sum_probs=95.5

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..|.++|+++|++.+ +++++++|.||++||++|+.+.|.|++++..+.  +.+.++.+|+++++++|++|+|+++||++
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~   79 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS--DRLKVVKLEIDPNPTTVKKYKVEGVPALR   79 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT--TTCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcC--CcceeceecccccHHHHHHhcccCCCEEE
Confidence            468999999998855 778999999999999999999999999999987  56999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +|++|. ...++.|.++.+++.+||++.+
T Consensus        80 ~~~~g~-~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          80 LVKGEQ-ILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCE-EEEEEeCCCCHHHHHHHHHHhc
Confidence            998665 4478999999999999998753

>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: ERP29 C domain-like
superfamily: ERP29 C domain-like
family: ERP29 C domain-like
domain: Endoplasmic reticulum protein ERP29, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=9.2e-24  Score=152.99  Aligned_cols=96  Identities=25%  Similarity=0.546  Sum_probs=90.6

Q ss_pred             ccchhhHHHHHHHHHhcch-hhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhccCCh
Q 018270          263 AGIVASLDALVKEFVAASG-DEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISA  341 (358)
Q Consensus       263 ~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~  341 (358)
                      +|+++.+|.++.+|+...+ +++..+++++++.+..+++.++++++||+++|+||+++|++|+.+|++||++||+|++++
T Consensus         1 pG~i~~lD~la~~F~~~~~~~~r~~i~~~~~~~~~~~~~~~~~~a~~Yvkvm~Kilekg~~~~~~E~~RL~~il~g~vs~   80 (106)
T d1g7da_           1 PGCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGEDFPASELARISKLIENKMSE   80 (106)
T ss_dssp             CCCCTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHSCCCT
T ss_pred             CCchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCCCH
Confidence            6899999999999998765 668999999999999988888899999999999999999999999999999999999999


Q ss_pred             hhhhhhHHhhhhhcccC
Q 018270          342 AKADEFVLKKNILSTFT  358 (358)
Q Consensus       342 ~~~~~~~~~~nil~~f~  358 (358)
                      +|+|+|+.|+|||++|.
T Consensus        81 ~K~del~~r~NIL~sF~   97 (106)
T d1g7da_          81 GKKEELQRSLNILTAFR   97 (106)
T ss_dssp             TTHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999995

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.90  E-value=1.2e-23  Score=156.06  Aligned_cols=103  Identities=29%  Similarity=0.600  Sum_probs=95.3

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEcc
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP  104 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~  104 (358)
                      ...+|+++|++.++++++++|+|||+||++|+.+.|.+.+++..++  +.+.++.+|+++++++|++|+|.++||+++|+
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~   79 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTCEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcC--CceEEEEEECCCCcccHHHCCcceeeEEEEEE
Confidence            4689999999999999999999999999999999999999999997  57999999999999999999999999999998


Q ss_pred             CCCCCcccccCCCCHHHHHHHHhccC
Q 018270          105 KGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       105 ~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +|.. ..++.|..+.++|.++|.+.+
T Consensus        80 ~G~~-~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          80 GGEP-VKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             TTEE-EEEEESCCCHHHHHHHTTTTC
T ss_pred             CCEE-EEEEECCCCHHHHHHHHHHHh
Confidence            7654 478999999999999998753

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.89  E-value=2.8e-23  Score=154.64  Aligned_cols=105  Identities=30%  Similarity=0.644  Sum_probs=95.9

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      +..+|+++|++.+.+++++++|.|||+||++|+.+.|.+.+++..+.  +++.++.+|++.+++++++|+|+++||+++|
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhc--ccceEEEEecccchhHHHHhcccceEEEEEE
Confidence            45689999999987888999999999999999999999999999885  5789999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      ++| +...++.|.++.++|.+||+++++
T Consensus        81 ~~G-~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          81 KGG-KKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SSS-SEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             ECC-eEEEEEeCCCCHHHHHHHHHHhhC
Confidence            876 467789999999999999998753

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.8e-23  Score=159.24  Aligned_cols=112  Identities=41%  Similarity=0.860  Sum_probs=101.6

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      .+.|..+|.++|+++++++++++|.|||+||++|+.+.|.|.++++.+.+. ..|.++.|||++++.+|.+|+|.++||+
T Consensus         6 ~~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~   85 (120)
T d1meka_           6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred             CCCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeE
Confidence            457899999999999998999999999999999999999999999998754 4799999999999999999999999999


Q ss_pred             EEccCCCCC-cccccCCCCHHHHHHHHhccCCCC
Q 018270          101 QWFPKGSLE-PKKYEGPRSTEALAEYVNNEGGTN  133 (358)
Q Consensus       101 ~~~~~~~~~-~~~~~g~~~~~~i~~~i~~~~~~~  133 (358)
                      ++|.+|... +..|.|.++.++|.+||.+.+++.
T Consensus        86 ~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          86 KFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEECCeEeeeEEecCCCCHHHHHHHHHHhhCCC
Confidence            999887543 467899999999999999988763

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.89  E-value=3.4e-23  Score=153.37  Aligned_cols=102  Identities=24%  Similarity=0.590  Sum_probs=93.3

Q ss_pred             eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        25 v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      |.++|+++|++.+ +++++++|.|||+||++|+.+.|.+.++++.+.  +.+.++.+|+++++++|++|+|+++||+++|
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~--~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhc--CccceeEEecccchhhhhhcceeeeeEEEEE
Confidence            5789999999977 667899999999999999999999999999987  5689999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++|. ...++.|.++.++|.+||++.
T Consensus        79 ~~G~-~v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          79 KNGE-RKESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             ETTE-EEEEEEECCCHHHHHHHHHHH
T ss_pred             EcCe-EEEEEeCCCCHHHHHHHHHHh
Confidence            8764 447899999999999999865

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.3e-23  Score=153.95  Aligned_cols=104  Identities=31%  Similarity=0.704  Sum_probs=95.2

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..|.++|+++|++.+ +++++++|+|||+||+||+.+.|.+.+++..+.  +++.++.+|+++++.++.+|+|.++||++
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~vd~d~~~~l~~~~~v~~~PT~~   79 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhh--cceeeeeccccchhhHHHHhCCCcEEEEE
Confidence            578999999998855 778999999999999999999999999999876  67999999999999999999999999999


Q ss_pred             EccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          102 WFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      +|++|. ...++.|.++.++|.+||++.
T Consensus        80 ~~~~G~-~v~~~~G~~~~~~l~~~i~~~  106 (108)
T d2trxa_          80 LFKNGE-VAATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHHHHH
T ss_pred             EEECCE-EEEEEeCCCCHHHHHHHHHHh
Confidence            998765 447899999999999999875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.88  E-value=6.9e-23  Score=152.48  Aligned_cols=103  Identities=27%  Similarity=0.567  Sum_probs=93.5

Q ss_pred             eEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        25 v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      +..+|+++|++.+ ++++|++|.|||+||++|+.+.|.|.+++..+.  +++.++.||++++++++++|+|.++||+++|
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhc--ccceEEEEecccchhHHHHhcccceEEEEEE
Confidence            4567999998877 667899999999999999999999999999887  6789999999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhccC
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ++|. ...++.|.++.++|.+||++++
T Consensus        81 ~~G~-~v~~~~G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          81 KGGK-KCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSSS-EEEEEESCCCHHHHHHHHHHHC
T ss_pred             ECCe-EEEEEeCCCCHHHHHHHHHHhh
Confidence            8765 4588999999999999998764

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.88  E-value=7.2e-23  Score=151.85  Aligned_cols=103  Identities=32%  Similarity=0.620  Sum_probs=93.9

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      ...+|+++|++.+ +++++++|.||||||++|+.+.|.+.+++..+.  +++.++++|++.+++++++|+|.++||+++|
T Consensus         2 ~i~lt~~~f~~~i-~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~   78 (105)
T d1nw2a_           2 TMTLTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTCEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             EEEECHHHHHHHH-hCCCcEEEEEECCCCCCcccccchhhhhhhhcC--CceEEEEEECCCCcccHHHCCcceeeEEEEE
Confidence            4678999999988 778999999999999999999999999999985  5799999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      ++| +...++.|..+.++|.++|++.+
T Consensus        79 ~~G-~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          79 KGG-EPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHTTTTC
T ss_pred             ECC-EEEEEEECCCCHHHHHHHHHHHh
Confidence            977 45678999999999999987653

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.87  E-value=3.2e-23  Score=156.84  Aligned_cols=110  Identities=42%  Similarity=0.776  Sum_probs=91.6

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEE
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  220 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~  220 (358)
                      +.|..|++++|++.+.+++++++|.||+|||+||+.+.|.|+++++.+.......+..+++.+...++.+++|.++||++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~   81 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK   81 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence            45889999999998878889999999999999999999999999999975543333344444445556789999999999


Q ss_pred             EEeCCCc-ceeeecCCCCHHHHHHHHHHhcC
Q 018270          221 FFPKGNK-DGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       221 ~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      +|++|.. ....|.|.++.++|.+||+++..
T Consensus        82 ~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          82 LYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             EECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             EEECCccCceEEecCCCCHHHHHHHHHHccC
Confidence            9988765 56789999999999999998654

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=5.7e-22  Score=150.84  Aligned_cols=107  Identities=17%  Similarity=0.260  Sum_probs=93.2

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcC-CCCeEEEEEeCc-----ccHHHHHhcCC--
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDAD-----KYKDLAEKYGV--  213 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~-~~~v~~~~vd~~-----~~~~l~~~~~v--  213 (358)
                      .+++|++.||++++ .+.+.++|.||||||+||+  .|.|.++|+.+.. ..++.+++||++     ++.+++.+|+|  
T Consensus         3 g~v~L~~~nFd~~v-~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           3 GCVDLDELSFEKTV-ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TCEECCTTTHHHHH-TTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             ceEEcChHhHHHHH-hcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            37899999999999 6778999999999999999  4999999998743 468999999986     46899999998  


Q ss_pred             CcccEEEEEeCCCcce--eeecCCCCHHHHHHHHHHhcCC
Q 018270          214 SGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       214 ~~~Pti~~~~~g~~~~--~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      .++||+++|++|+..+  +.|.|+++.++|.+||++++|.
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            5799999999887644  4678999999999999998774

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.4e-22  Score=158.36  Aligned_cols=111  Identities=42%  Similarity=0.790  Sum_probs=96.5

Q ss_pred             CCCCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCC-CCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          139 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      ..+.|.+|++++|++++.+.+++|+|.||+|||++|+.+.|.|.++|+.+... ..+.++.+|++.  .++++|+|.++|
T Consensus        10 ~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~--~~~~~~~v~~~P   87 (140)
T d2b5ea1          10 QDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE--NDVRGVVIEGYP   87 (140)
T ss_dssp             CSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG--CCCSSCCCSSSS
T ss_pred             CCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc--hhccccccccCC
Confidence            45679999999999999778899999999999999999999999999998632 367787777754  579999999999


Q ss_pred             EEEEEeCCCc-ceeeecCCCCHHHHHHHHHHhcCC
Q 018270          218 TLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT  251 (358)
Q Consensus       218 ti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~~  251 (358)
                      |+++|++|+. .+..|.|.++.++|.+||+++.+.
T Consensus        88 tl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~  122 (140)
T d2b5ea1          88 TIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHF  122 (140)
T ss_dssp             EEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTT
T ss_pred             eEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCC
Confidence            9999998865 567799999999999999987554

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.86  E-value=6.2e-22  Score=151.19  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=91.8

Q ss_pred             cCCCeEEcChhhHHHHhcCCCcEEEEEECCCChhh------hhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCc
Q 018270           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHC------KKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGV   94 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C------~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i   94 (358)
                      +.+.|.+||++||++++++++.++|+||+|||+||      ..+.+.++.++..+++ ..|.++.|||++++++|++|+|
T Consensus         9 ~~~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~-~~v~~a~Vd~~~~~~l~~~~~I   87 (124)
T d1a8ya1           9 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLVDSEKDAAVAKKLGL   87 (124)
T ss_dssp             CCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG-GTEEEEEEETTTSHHHHHTTTC
T ss_pred             CCCccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc-CCeEEEEEEeecccchhhcccc
Confidence            34568999999999999889999999999999974      4455555666665543 4699999999999999999999


Q ss_pred             cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccCC
Q 018270           95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG  131 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~  131 (358)
                      ++|||+++|.+|.  +..|.|.++.++|.+|+.+...
T Consensus        88 ~~yPTi~~f~~g~--~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          88 TEEDSIYVFKEDE--VIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             CSTTCEEEEESSS--EEECCSCCSHHHHHHHHHHHHS
T ss_pred             ccCCcEEEeccCc--cEEeeCCCCHHHHHHHHHHhcC
Confidence            9999999998774  4789999999999999987654

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.86  E-value=1.3e-21  Score=149.45  Aligned_cols=107  Identities=18%  Similarity=0.248  Sum_probs=91.0

Q ss_pred             CCCceEcCcccHHHHHhcCCCcEEEEEcCCCCccc------chhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCC
Q 018270          140 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHC------KNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV  213 (358)
Q Consensus       140 ~~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c------~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v  213 (358)
                      .+.|.+||.+||++++ .+++.++|.||+|||++|      ..+.+.++.+|+.+. +..+.+++|||+.+.++|++|+|
T Consensus        10 ~~~V~~L~~~nf~~~l-~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~-~~~v~~a~Vd~~~~~~l~~~~~I   87 (124)
T d1a8ya1          10 VDRVINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLE-DKGVGFGLVDSEKDAAVAKKLGL   87 (124)
T ss_dssp             CCCCEECCTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTG-GGTEEEEEEETTTSHHHHHTTTC
T ss_pred             CCccEECCHHHHHHHH-HhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhc-cCCeEEEEEEeecccchhhcccc
Confidence            3558999999999998 567889999999999974      344555666666664 34699999999999999999999


Q ss_pred             CcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          214 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       214 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      ++|||+++|.+|  .+..|.|.++.+.|++||.+.+.
T Consensus        88 ~~yPTi~~f~~g--~~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          88 TEEDSIYVFKED--EVIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             CSTTCEEEEESS--SEEECCSCCSHHHHHHHHHHHHS
T ss_pred             ccCCcEEEeccC--ccEEeeCCCCHHHHHHHHHHhcC
Confidence            999999999987  46789999999999999998764

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=1.8e-21  Score=147.96  Aligned_cols=108  Identities=25%  Similarity=0.280  Sum_probs=94.3

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhc-CCceEEEEEeCc-----cchhhHhhcCc--
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK-AKSVLIGKVDCD-----EHKSLCSKYGV--   94 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~-~~~v~~~~vd~~-----~~~~l~~~~~i--   94 (358)
                      ..+++||+.||++++++++.+||+||||||+||+  .|.|.++++.+.. ..++.++.|||+     ++.++|++|+|  
T Consensus         2 ~g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           2 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             CceEEcChHhHHHHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            3578999999999999999999999999999999  4999999988753 368999999996     46899999988  


Q ss_pred             cCCCeEEEccCCCCC--cccccCCCCHHHHHHHHhccCCC
Q 018270           95 QGYPTIQWFPKGSLE--PKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~--~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +++||+++|++|+..  ...|.|.++.++|.+|+.++.+.
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            589999999988654  34678999999999999998764

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.85  E-value=6e-22  Score=149.73  Aligned_cols=110  Identities=35%  Similarity=0.710  Sum_probs=91.4

Q ss_pred             CCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEE
Q 018270           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~  101 (358)
                      ..|..|+.+||++.+ +++++++|+||++||+||+++.|.|+++++.+.......+..+++.+...++.+++|.++||++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~   81 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK   81 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence            468999999999976 7889999999999999999999999999999976543333445555556667899999999999


Q ss_pred             EccCCCC-CcccccCCCCHHHHHHHHhccCCC
Q 018270          102 WFPKGSL-EPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       102 ~~~~~~~-~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +|.+|.. ....|.|.++.++|.+||.+....
T Consensus        82 ~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~~  113 (116)
T d2djja1          82 LYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  113 (116)
T ss_dssp             EECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             EEECCccCceEEecCCCCHHHHHHHHHHccCc
Confidence            9987653 346899999999999999987553

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.84  E-value=1.5e-20  Score=140.34  Aligned_cols=105  Identities=30%  Similarity=0.601  Sum_probs=91.7

Q ss_pred             CCCCceEcCcccHHHHHhcC-CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-cHHHHHhcCCCcc
Q 018270          139 VPSNVVVLTADNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGF  216 (358)
Q Consensus       139 ~~~~v~~l~~~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~l~~~~~v~~~  216 (358)
                      ..+.+.+++.++|.+.+... +++++|.||++||+||+.+.|.|+++++.+.   ++.++.+|+++ +++++++|+|+++
T Consensus         4 ~~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~---~v~~~~vd~~~~~~~l~~~~~V~~~   80 (112)
T d1f9ma_           4 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVV   80 (112)
T ss_dssp             CTTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSSS
T ss_pred             cceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccc---cceeecccccccchhhHhheeeccC
Confidence            35678999999999998654 5799999999999999999999999999984   58899999974 7899999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ||+++|++| +...++.|. +.+.+.++|+++
T Consensus        81 Pt~~~~k~G-~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          81 PTFKILKEN-SVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             SEEEEEETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             CEEEEEECC-EEEEEEeCC-CHHHHHHHHHHc
Confidence            999999866 466778885 778999999864

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.83  E-value=5.5e-21  Score=142.95  Aligned_cols=104  Identities=26%  Similarity=0.580  Sum_probs=90.9

Q ss_pred             CCeEEc-ChhhHHHHh----cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCC
Q 018270           23 DDVVVL-TEDNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGY   97 (358)
Q Consensus        23 ~~v~~l-~~~~f~~~~----~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (358)
                      +++..+ |.++|++.+    .++++++|+||++||++|+.+.|.|+++++.++  +++.|+.||++++++++++|+|+++
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~   79 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA--GKVIFLKVDVDAVAAVAEAAGITAM   79 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTTHHHHHHHTCCBS
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhccc--ceEEEEEeeccccccccccccccCC
Confidence            456667 678887776    467999999999999999999999999999986  5699999999999999999999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ||+++|++|. ...++.| .+.++|.+||.++.
T Consensus        80 Pt~~~~~~G~-~v~~~~G-~~~~~l~~~i~k~~  110 (112)
T d1ep7a_          80 PTFHVYKDGV-KADDLVG-ASQDKLKALVAKHA  110 (112)
T ss_dssp             SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHH
T ss_pred             CEEEEEECCE-EEEEEeC-cCHHHHHHHHHHHh
Confidence            9999998765 4477888 58999999998764

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.83  E-value=1.1e-20  Score=141.23  Aligned_cols=105  Identities=24%  Similarity=0.620  Sum_probs=91.6

Q ss_pred             CceEc-CcccHHHHHh---cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          142 NVVVL-TADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       142 ~v~~l-~~~~f~~~~~---~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      ++..+ +.++|++.+.   ..+++++|.||++||++|+.+.|.|+++++.+.  +++.|+.+|++++++++++|+|+++|
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~P   80 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA--GKVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhccc--ceEEEEEeeccccccccccccccCCC
Confidence            46667 5788888774   357899999999999999999999999999985  46999999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      |+++|++| +...++.| .+.++|.+||+++..
T Consensus        81 t~~~~~~G-~~v~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          81 TFHVYKDG-VKADDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETT-EEEEEEES-CCHHHHHHHHHHHHC
T ss_pred             EEEEEECC-EEEEEEeC-cCHHHHHHHHHHHhC
Confidence            99999877 45667777 589999999998754

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.83  E-value=9.7e-21  Score=141.42  Aligned_cols=104  Identities=28%  Similarity=0.610  Sum_probs=90.7

Q ss_pred             cCCCeEEcChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-chhhHhhcCccCC
Q 018270           21 LADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-HKSLCSKYGVQGY   97 (358)
Q Consensus        21 ~~~~v~~l~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~   97 (358)
                      ....+.++|.++|.+.+  +++++++|+||++||++|+.+.|.|+++++++.   ++.++.+|+++ +++++++|+|+++
T Consensus         4 ~~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~---~v~~~~vd~~~~~~~l~~~~~V~~~   80 (112)
T d1f9ma_           4 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVV   80 (112)
T ss_dssp             CTTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSSS
T ss_pred             cceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccc---cceeecccccccchhhHhheeeccC
Confidence            35678999999999998  346899999999999999999999999999984   47899999975 7899999999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ||+++|++|. ...++.|. +.+++.++|++.
T Consensus        81 Pt~~~~k~G~-~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          81 PTFKILKENS-VVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             SEEEEEETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             CEEEEEECCE-EEEEEeCC-CHHHHHHHHHHc
Confidence            9999998665 44788885 778999998764

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=6.7e-21  Score=148.71  Aligned_cols=109  Identities=36%  Similarity=0.738  Sum_probs=93.7

Q ss_pred             CCCeEEcChhhHHHHh-cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEeCccchhhHhhcCccCCCe
Q 018270           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPT   99 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~   99 (358)
                      .+.|..|+.++|++.+ +.+++++|.|||+||++|+.+.|.|.++++.+.+. ..+.++.+|+.  ..+|.+|+|.++||
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~~~Pt   88 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIEGYPT   88 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCSSSSE
T ss_pred             CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccccccCCe
Confidence            4579999999999988 66889999999999999999999999999988753 35777777775  56899999999999


Q ss_pred             EEEccCCCCC-cccccCCCCHHHHHHHHhccCCC
Q 018270          100 IQWFPKGSLE-PKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       100 l~~~~~~~~~-~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      +++|++|... +..|.|.++.+.|.+||.+..+.
T Consensus        89 l~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~  122 (140)
T d2b5ea1          89 IVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHF  122 (140)
T ss_dssp             EEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTT
T ss_pred             EEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCC
Confidence            9999887543 46799999999999999987543

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.4e-20  Score=137.86  Aligned_cols=100  Identities=31%  Similarity=0.631  Sum_probs=86.8

Q ss_pred             eEc-CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          144 VVL-TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       144 ~~l-~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      .++ +.++|++.+.. ++++++|.|||+||+||+.+.|.+.++++.+.   ++.++++|++++++++++|+|+++||+++
T Consensus         3 ~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~   79 (105)
T d2ifqa1           3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPTFQF   79 (105)
T ss_dssp             EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             EEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccc---cceeeecccccCHhHHHHcCceEEEEEEE
Confidence            445 55778888854 35789999999999999999999999999883   57899999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      |++| +...++.|. +.+.|.++|++.
T Consensus        80 ~~~G-~~v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          80 FKKG-QKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             EETT-EEEEEEESC-CHHHHHHHHHHH
T ss_pred             EECC-EEEEEEeCC-CHHHHHHHHHhh
Confidence            9877 467778885 789999999875

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.83  E-value=9.8e-21  Score=139.55  Aligned_cols=97  Identities=28%  Similarity=0.591  Sum_probs=87.4

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        28 l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      -|.++|+++++++++++|+||++||++|+.+.|.++++++.++   ++.++.+|++++++++++|+|.++||+++|++|.
T Consensus         6 ~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~---~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~   82 (103)
T d1syra_           6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS   82 (103)
T ss_dssp             CSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred             CCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhccc---ceEEEeeccccCcceeeeeeeecceEEEEEECCE
Confidence            4678999999999999999999999999999999999999984   5779999999999999999999999999998765


Q ss_pred             CCcccccCCCCHHHHHHHHhcc
Q 018270          108 LEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       108 ~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      . ..++.|. +.++|.+||+++
T Consensus        83 ~-v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          83 S-VDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             E-EEEEESC-CHHHHHHHHHTT
T ss_pred             E-EEEEeCc-CHHHHHHHHHhh
Confidence            4 4788884 789999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=2.7e-20  Score=139.13  Aligned_cols=105  Identities=23%  Similarity=0.581  Sum_probs=90.5

Q ss_pred             cCCCeEEc-ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCC
Q 018270           21 LADDVVVL-TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGY   97 (358)
Q Consensus        21 ~~~~v~~l-~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (358)
                      +.+.+.++ +.++|+..+  .++++++|+|||+||++|+.+.|.|+++++.++  +.+.++.+|++++++++++|+|.++
T Consensus         3 ~~~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~~i~~d~~~~l~~~~~V~~~   80 (111)
T d1xwaa_           3 AAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSM   80 (111)
T ss_dssp             CSCCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCCeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcc--cceEEEEEEeecCcchhhcCCCccc
Confidence            34556667 457898877  567899999999999999999999999999997  5699999999999999999999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ||+++|++|.. ..++.|. +.++|.++|+++
T Consensus        81 Pt~~~~~~G~~-v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          81 PTFVFLKNGVK-VEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             SEEEEEETTEE-EEEEESC-CHHHHHHHHHHT
T ss_pred             cEEEEEECCEE-EEEEeCC-CHHHHHHHHHhc
Confidence            99999987654 4788885 568899999864

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=2.5e-20  Score=139.84  Aligned_cols=104  Identities=28%  Similarity=0.550  Sum_probs=89.2

Q ss_pred             CCCeEEc-ChhhHHHHh----cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccC
Q 018270           22 ADDVVVL-TEDNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG   96 (358)
Q Consensus        22 ~~~v~~l-~~~~f~~~~----~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (358)
                      ...++.+ |.++|++.+    +.+++++|+|||+||++|+.+.|.|+++++.+   +++.++.+|++++++++++|+|++
T Consensus         5 ~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~---~~~~~~~vd~~~~~~l~~~~~V~~   81 (114)
T d1xfla_           5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL---PNVLFLKVDTDELKSVASDWAIQA   81 (114)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHC---SSEEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccc---cccceeEEEeeeceeeccccceee
Confidence            3455555 778887765    56899999999999999999999999999988   458999999999999999999999


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      +||+++|.+|.. ..++.|. +.++|.++|.+++
T Consensus        82 ~Pt~~~~~~G~~-v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          82 MPTFMFLKEGKI-LDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             SSEEEEEETTEE-EEEEESC-CHHHHHHHHHHHC
T ss_pred             eEEEEEEECCEE-EEEEeCc-CHHHHHHHHHHhh
Confidence            999999987754 4677884 7899999998763

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.2e-20  Score=136.13  Aligned_cols=98  Identities=21%  Similarity=0.425  Sum_probs=87.4

Q ss_pred             CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270          147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       147 ~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g  225 (358)
                      +.++|++.+.+ ++++++|.||++||++|+.+.|.|+++++.+.   ++.|+++|++++++++++|+|.++||+++|.+|
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~---~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   84 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQFFRNK   84 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccc---cccccccccccchhhhhhcCceeceEEEEEECC
Confidence            67899988853 46789999999999999999999999999884   689999999999999999999999999999877


Q ss_pred             CcceeeecCCCCHHHHHHHHHHhc
Q 018270          226 NKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       226 ~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                       +...++.| .+.+.|.++|++++
T Consensus        85 -~~v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          85 -VRIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             -EEEEEEES-SCHHHHHHHHHHHH
T ss_pred             -EEEEEEeC-CCHHHHHHHHHHhh
Confidence             46677888 58999999998865

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.82  E-value=3.1e-20  Score=138.78  Aligned_cols=102  Identities=26%  Similarity=0.412  Sum_probs=88.7

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      +.+...+.++|.++++++++++|+|||+||++|+.+.|.|+++++.+   +++.|+.||++++++++++|||.++||+++
T Consensus         9 ~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~   85 (113)
T d1r26a_           9 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---PTVKFAKVDADNNSEIVSKCRVLQLPTFII   85 (113)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC---TTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceecccccccc---ccccccccccccchhhHHHccccCCCEEEE
Confidence            33444578899999999999999999999999999999999999988   569999999999999999999999999999


Q ss_pred             ccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          103 FPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |.+|... .++.|. +.+.+.++|.+.
T Consensus        86 ~~~G~~v-~~~~G~-~~~~l~~~l~~~  110 (113)
T d1r26a_          86 ARSGKML-GHVIGA-NPGMLRQKLRDI  110 (113)
T ss_dssp             EETTEEE-EEEESS-CHHHHHHHHHHH
T ss_pred             EECCEEE-EEEeCC-CHHHHHHHHHHH
Confidence            9877643 678885 577788777654

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=6.4e-20  Score=137.56  Aligned_cols=105  Identities=25%  Similarity=0.555  Sum_probs=90.0

Q ss_pred             CCCceEc-CcccHHHHHh---cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc
Q 018270          140 PSNVVVL-TADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG  215 (358)
Q Consensus       140 ~~~v~~l-~~~~f~~~~~---~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~  215 (358)
                      ...++.+ +.++|++.+.   +.+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++++++++++|+|++
T Consensus         5 ~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~~~~~~l~~~~~V~~   81 (114)
T d1xfla_           5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQA   81 (114)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc---ccceeEEEeeeceeeccccceee
Confidence            3445555 6788887663   467899999999999999999999999999884   68999999999999999999999


Q ss_pred             ccEEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          216 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      +||+++|.+|. ...++.|. +.++|.+||++++
T Consensus        82 ~Pt~~~~~~G~-~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          82 MPTFMFLKEGK-ILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             SSEEEEEETTE-EEEEEESC-CHHHHHHHHHHHC
T ss_pred             eEEEEEEECCE-EEEEEeCc-CHHHHHHHHHHhh
Confidence            99999998774 56677774 7899999998875

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.82  E-value=2.7e-20  Score=137.12  Aligned_cols=96  Identities=29%  Similarity=0.672  Sum_probs=85.9

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  226 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~  226 (358)
                      +..+|++++ ..+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++++++++++|+|.++||+++|++| 
T Consensus         7 s~~~f~~~i-~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~---~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G-   81 (103)
T d1syra_           7 SQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNG-   81 (103)
T ss_dssp             SHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETT-
T ss_pred             CHHHHHHHH-hCCCcEEEEEeCCcccCcccccccchhhhhccc---ceEEEeeccccCcceeeeeeeecceEEEEEECC-
Confidence            678899988 567899999999999999999999999999984   578999999999999999999999999999976 


Q ss_pred             cceeeecCCCCHHHHHHHHHHh
Q 018270          227 KDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       227 ~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +...++.|. +.+.|.+||+++
T Consensus        82 ~~v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          82 SSVDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             EEEEEEESC-CHHHHHHHHHTT
T ss_pred             EEEEEEeCc-CHHHHHHHHHhh
Confidence            456678884 789999999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3e-20  Score=137.32  Aligned_cols=96  Identities=29%  Similarity=0.625  Sum_probs=84.8

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        29 ~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      +.++|++.+  +++++++|+|||+||++|+.+.|.+.++++.+   +++.++.+|++++++++++|+|+++||+++|++|
T Consensus         7 s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~---~~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~~G   83 (105)
T d2ifqa1           7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccc---ccceeeecccccCHhHHHHcCceEEEEEEEEECC
Confidence            567899988  45789999999999999999999999999988   4567999999999999999999999999999876


Q ss_pred             CCCcccccCCCCHHHHHHHHhcc
Q 018270          107 SLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       107 ~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .. ..++.|. +.+++.++|++.
T Consensus        84 ~~-v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          84 QK-VGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             EE-EEEEESC-CHHHHHHHHHHH
T ss_pred             EE-EEEEeCC-CHHHHHHHHHhh
Confidence            54 4788885 789999998764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.81  E-value=6.6e-20  Score=136.99  Aligned_cols=100  Identities=26%  Similarity=0.406  Sum_probs=86.9

Q ss_pred             ceEc-CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          143 VVVL-TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       143 v~~l-~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      +.++ +.++|++++ ..+++++|.|||+||++|+.+.|.|+++++.+   +++.|+.||++++++++++|||.++||+++
T Consensus        10 vi~i~s~~~~~~~~-~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~   85 (113)
T d1r26a_          10 VVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---PTVKFAKVDADNNSEIVSKCRVLQLPTFII   85 (113)
T ss_dssp             CEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC---TTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eEEeCCHHHHHHHH-cCCCeEEEEEECCCCccchhhceecccccccc---ccccccccccccchhhHHHccccCCCEEEE
Confidence            4444 778899988 77889999999999999999999999999988   479999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      |++|. ...++.|. +.+.+.++|.+.
T Consensus        86 ~~~G~-~v~~~~G~-~~~~l~~~l~~~  110 (113)
T d1r26a_          86 ARSGK-MLGHVIGA-NPGMLRQKLRDI  110 (113)
T ss_dssp             EETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             EECCE-EEEEEeCC-CHHHHHHHHHHH
Confidence            99874 55677774 677888877654

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=4.4e-20  Score=140.21  Aligned_cols=105  Identities=23%  Similarity=0.388  Sum_probs=90.3

Q ss_pred             CCceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEE-----eCcccHHHHHhcC--C
Q 018270          141 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL-----DADKYKDLAEKYG--V  213 (358)
Q Consensus       141 ~~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~v-----d~~~~~~l~~~~~--v  213 (358)
                      ..+++||..||++++ .+++.++|.||+|||.+|+  .|.|+++|..+....+...+.|     |++.+.+++.+|+  |
T Consensus         4 ~~~v~L~~~nFd~~i-~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I   80 (122)
T d1g7ea_           4 KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   80 (122)
T ss_dssp             SSSCSCSHHHHHHHG-GGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS
T ss_pred             CceEECCHHhHHHHH-hhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc
Confidence            347889999999999 7789999999999999886  4899999999987666555444     6778889999876  6


Q ss_pred             CcccEEEEEeCCCc-ceeeecCCCCHHHHHHHHHHh
Q 018270          214 SGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       214 ~~~Pti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++|||+++|++|.. .+..|.|.++.++|++||+++
T Consensus        81 ~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          81 ESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             cCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            79999999999875 568899999999999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=8.5e-20  Score=136.35  Aligned_cols=104  Identities=30%  Similarity=0.645  Sum_probs=89.3

Q ss_pred             CCceEc-CcccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccE
Q 018270          141 SNVVVL-TADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT  218 (358)
Q Consensus       141 ~~v~~l-~~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  218 (358)
                      ..+.++ +.++|+..+. .++++++|.||++||+||+.+.|.|+++++.+.  +.+.++.+|++++++++++|+|+++||
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~~i~~d~~~~l~~~~~V~~~Pt   82 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPT   82 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcc--cceEEEEEEeecCcchhhcCCCccccE
Confidence            445666 4578988774 457899999999999999999999999999985  569999999999999999999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      +++|++| +...++.|. +.++|.+||+++
T Consensus        83 ~~~~~~G-~~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          83 FVFLKNG-VKVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             EEEEETT-EEEEEEESC-CHHHHHHHHHHT
T ss_pred             EEEEECC-EEEEEEeCC-CHHHHHHHHHhc
Confidence            9999877 456778885 567899999875

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.81  E-value=2.5e-20  Score=139.62  Aligned_cols=103  Identities=31%  Similarity=0.568  Sum_probs=86.1

Q ss_pred             CCeEEcC-hhh----HHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCC
Q 018270           23 DDVVVLT-EDN----FEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGY   97 (358)
Q Consensus        23 ~~v~~l~-~~~----f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (358)
                      +.++.++ .++    |++..+++++++|+||++||++|+.+.|.|+++++.+   +++.++.+|++++++++++|+|.++
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~---~~~~~~~vd~d~~~~l~~~~~I~~~   80 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHC---SSEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccC---CCceEEeeeeeccccccccCeeccc
Confidence            3455554 343    4445577899999999999999999999999999987   4588999999999999999999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ||+++|++|. ...++.| .+.++|.++|.++.
T Consensus        81 Pt~~~~k~G~-~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          81 PTFIFLKDGK-LVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             TEEEEEETTE-EEEEEEC-CCTTHHHHHHHHHH
T ss_pred             ceEEEEECCE-EEEEEcC-CCHHHHHHHHHHHh
Confidence            9999998765 4367777 68899999998763

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.81  E-value=5.2e-20  Score=137.91  Aligned_cols=103  Identities=28%  Similarity=0.570  Sum_probs=86.1

Q ss_pred             CceEcC-cccHHHHHh---cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCccc
Q 018270          142 NVVVLT-ADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP  217 (358)
Q Consensus       142 ~v~~l~-~~~f~~~~~---~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P  217 (358)
                      .+..++ .++|++.+.   ..+++++|.||++||++|+.+.|.|+++++.+   +++.++.+|++++++++++|+|+++|
T Consensus         5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~---~~~~~~~vd~d~~~~l~~~~~I~~~P   81 (113)
T d1ti3a_           5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDELKAVAEEWNVEAMP   81 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHC---SSEEEEEEETTTCHHHHHHHHCSSTT
T ss_pred             cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccC---CCceEEeeeeeccccccccCeecccc
Confidence            445553 455555442   56789999999999999999999999999988   46899999999999999999999999


Q ss_pred             EEEEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          218 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       218 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      |+++|++| +...++.| .+.++|.+||+++.
T Consensus        82 t~~~~k~G-~~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          82 TFIFLKDG-KLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEEETT-EEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             eEEEEECC-EEEEEEcC-CCHHHHHHHHHHHh
Confidence            99999977 45566677 68899999999874

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.2e-20  Score=136.62  Aligned_cols=97  Identities=22%  Similarity=0.466  Sum_probs=86.6

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        29 ~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      |+++|++.+  +++++++|+|||+||++|+.+.|.|++++++++   ++.|+.+|++++++++++|+|.++||+++|++|
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~---~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   84 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQFFRNK   84 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccc---cccccccccccchhhhhhcCceeceEEEEEECC
Confidence            678999988  457899999999999999999999999999884   588999999999999999999999999999877


Q ss_pred             CCCcccccCCCCHHHHHHHHhccC
Q 018270          107 SLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       107 ~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      .. ..++.| .+.+.|.++|++++
T Consensus        85 ~~-v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          85 VR-IDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             EE-EEEEES-SCHHHHHHHHHHHH
T ss_pred             EE-EEEEeC-CCHHHHHHHHHHhh
Confidence            64 478888 58999999998753

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.81  E-value=1.3e-19  Score=134.57  Aligned_cols=102  Identities=21%  Similarity=0.321  Sum_probs=85.0

Q ss_pred             cCcccHHHHHhcCCCcE-EEEEcCCCCcccchhhhhHHHHHHHh--cCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEE
Q 018270          146 LTADNFDEIVLDKSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       146 l~~~~f~~~~~~~~~~v-~v~f~a~~C~~c~~~~~~~~~la~~~--~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~  222 (358)
                      |++++++.+. ..++++ ++.||++||+||+.+.|.+.++|...  .....+.+..+|++++++++++|+|.++||++++
T Consensus         2 l~~~~~e~~~-~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~   80 (107)
T d1a8la2           2 LMDETKQAIR-NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ   80 (107)
T ss_dssp             CCHHHHHHHT-TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCHHHHHHHH-hcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEE
Confidence            5566666655 445554 66799999999999999999998753  2345799999999999999999999999999999


Q ss_pred             eCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          223 PKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       223 ~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      .+| ....++.|.++.+.+.++|.+.+
T Consensus        81 ~~G-~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          81 VNG-EDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCC-eEEEEEECCCCHHHHHHHHHHhh
Confidence            877 46678899999999999998764

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.1e-19  Score=138.05  Aligned_cols=107  Identities=21%  Similarity=0.366  Sum_probs=91.8

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCc-----eEEEEEeCccchhhHhhcC--c
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-----VLIGKVDCDEHKSLCSKYG--V   94 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~-----v~~~~vd~~~~~~l~~~~~--i   94 (358)
                      ...+++||++||++++.+++.+||+||+|||.+|..  |.|.+++..+.+..+     |.++.+||++++++|.+++  |
T Consensus         3 ~~~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I   80 (122)
T d1g7ea_           3 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   80 (122)
T ss_dssp             CSSSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS
T ss_pred             CCceEECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc
Confidence            356899999999999999999999999999988864  899999999986544     4455668889999999875  7


Q ss_pred             cCCCeEEEccCCCC-CcccccCCCCHHHHHHHHhccC
Q 018270           95 QGYPTIQWFPKGSL-EPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        95 ~~~P~l~~~~~~~~-~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ++|||+++|.+|.. .+..|+|.++.++|.+||++..
T Consensus        81 ~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          81 ESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             SSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTTS
T ss_pred             cCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhcc
Confidence            79999999998764 3578999999999999998763

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.1e-19  Score=137.43  Aligned_cols=109  Identities=13%  Similarity=0.181  Sum_probs=95.5

Q ss_pred             ceEcCcccHHHHHhcCC-CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          143 VVVLTADNFDEIVLDKS-KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~-~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      ...++..+|+..+...+ ++|++.||++||++|+.+.|.+.++++.+.+ ..+.++.||++.+++++++|+|.++||+++
T Consensus        19 ~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~-~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             CEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTT-SCEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred             CcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccC-CcceeEEEEecCCHHHHHhhccCcceeEEE
Confidence            45688999999885443 5788899999999999999999999999963 358899999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHHhcCCCC
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  253 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~  253 (358)
                      |++| +....+.|.++.++|.++|+..+.+..
T Consensus        98 ~~~G-~~v~~~~G~~~~~~l~~~i~~ll~~~~  128 (132)
T d2hfda1          98 FTGG-NYRGVLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_dssp             EETT-EEEEEECCCSCHHHHHHHHHHHHSCSS
T ss_pred             EEcC-cEeeeecCCCCHHHHHHHHHHHhCccc
Confidence            9877 567889999999999999998876654

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.77  E-value=5.1e-19  Score=131.24  Aligned_cols=102  Identities=18%  Similarity=0.230  Sum_probs=85.7

Q ss_pred             EcChhhHHHHhcCCCcE-EEEEECCCChhhhhhhHHHHHHHHHhh--cCCceEEEEEeCccchhhHhhcCccCCCeEEEc
Q 018270           27 VLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYEKLGASFK--KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF  103 (358)
Q Consensus        27 ~l~~~~f~~~~~~~~~~-lv~fya~~c~~C~~~~~~~~~~~~~~~--~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~  103 (358)
                      +|+++.++.+...++++ ++.||++||+||+++.|.+.+++....  ....|.+..+|++++++++++|+|.++||+++|
T Consensus         1 ~l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~   80 (107)
T d1a8la2           1 NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ   80 (107)
T ss_dssp             CCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEE
Confidence            36777777666666665 556999999999999999999986532  235799999999999999999999999999998


Q ss_pred             cCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          104 PKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       104 ~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .+|... .++.|.++.+.+.++|.+.
T Consensus        81 ~~G~~~-~~~~G~~~~~~~~~~i~~a  105 (107)
T d1a8la2          81 VNGEDR-VEFEGAYPEKMFLEKLLSA  105 (107)
T ss_dssp             ETTEEE-EEEESCCCHHHHHHHHHHH
T ss_pred             eCCeEE-EEEECCCCHHHHHHHHHHh
Confidence            876544 7889999999999999865

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.3e-19  Score=136.44  Aligned_cols=99  Identities=14%  Similarity=0.204  Sum_probs=82.1

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCC
Q 018270           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG  106 (358)
Q Consensus        29 ~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~  106 (358)
                      +.++|++++  +++++++|+|||+||++|+++.|.+++++++++  +.+.++.||++++++++++|+|.++||+++|.+|
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g   86 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   86 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhh--ccceEEEeeccccchhhhhcCeeeEEEEEEEeCC
Confidence            467899988  457799999999999999999999999999997  6699999999999999999999999999999887


Q ss_pred             CCCcccc--------cC-CCCHHHHHHHHhcc
Q 018270          107 SLEPKKY--------EG-PRSTEALAEYVNNE  129 (358)
Q Consensus       107 ~~~~~~~--------~g-~~~~~~i~~~i~~~  129 (358)
                      ......+        .+ ..+.+++.+.++..
T Consensus        87 ~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          87 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             cEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            6432222        12 24667777776653

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.4e-19  Score=135.92  Aligned_cols=100  Identities=18%  Similarity=0.302  Sum_probs=81.3

Q ss_pred             CcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCC
Q 018270          147 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  225 (358)
Q Consensus       147 ~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g  225 (358)
                      +..+|++.+.. .+++|+|.|||+||++|+.+.|.++++++.+.  +.+.++.||++++++++++|+|.++||+++|.+|
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g   86 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   86 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhh--ccceEEEeeccccchhhhhcCeeeEEEEEEEeCC
Confidence            55788888854 56799999999999999999999999999995  4699999999999999999999999999999988


Q ss_pred             CcceeeecC--------C-CCHHHHHHHHHHh
Q 018270          226 NKDGEEYGG--------G-RDLEDFVSFINEK  248 (358)
Q Consensus       226 ~~~~~~~~g--------~-~~~~~l~~~i~~~  248 (358)
                      +.....+.+        . .+.+++++.+...
T Consensus        87 ~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          87 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             cEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            643333321        1 3566666666544

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.1e-19  Score=138.97  Aligned_cols=108  Identities=13%  Similarity=0.147  Sum_probs=95.1

Q ss_pred             CCeEEcChhhHHHHhcC--CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           23 DDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~--~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      ..+..++..+|++.+.+  +++++|.|||+|||+|+.+.|.|.++++++.+ ..+.++.||++++++++++|+|.++||+
T Consensus        17 ~g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~-~~~~~a~Vd~d~~~~la~~~~V~~~PT~   95 (132)
T d2hfda1          17 RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPAT   95 (132)
T ss_dssp             TTCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTT-SCEEEEEECHHHHHHHHHHHTCCSCCEE
T ss_pred             cCCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccC-CcceeEEEEecCCHHHHHhhccCcceeE
Confidence            46778999999998843  46788999999999999999999999999974 2478999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhccCCC
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGGT  132 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~  132 (358)
                      ++|++|.. ...+.|.++.+++.++|+....+
T Consensus        96 ~~~~~G~~-v~~~~G~~~~~~l~~~i~~ll~~  126 (132)
T d2hfda1          96 LVFTGGNY-RGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_dssp             EEEETTEE-EEEECCCSCHHHHHHHHHHHHSC
T ss_pred             EEEEcCcE-eeeecCCCCHHHHHHHHHHHhCc
Confidence            99987754 48999999999999999976554

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=4.9e-19  Score=133.12  Aligned_cols=105  Identities=14%  Similarity=0.206  Sum_probs=78.9

Q ss_pred             ceEcCcccHHHHHhcC-CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEE
Q 018270          143 VVVLTADNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~-~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  221 (358)
                      ...++..+++..+... .+++++.|+++||++|+.+.|.+.++++.|. +.++.++.||++.+++++++|||+++||+++
T Consensus        13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~-~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP-QFDWQVAVADLEQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCT-TSCCEEEEECHHHHHHHHHTTTCCSSSEEEE
T ss_pred             CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcC-CCceEEEEEECCCCHHHHHhcCcCcceEEEE
Confidence            4567888888877433 5678889999999999999999999999985 3368999999999999999999999999999


Q ss_pred             EeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          222 FPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       222 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      |++| +...++.|.++.+++.++|+..+
T Consensus        92 ~~~G-~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          92 FTDG-KLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             ESCC-----CEESCCCHHHHHHHHHHHH
T ss_pred             EEcC-eEEEEeeCCCCHHHHHHHHHHHh
Confidence            9766 57788999999999999998754

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=3.2e-19  Score=134.15  Aligned_cols=105  Identities=11%  Similarity=0.134  Sum_probs=81.0

Q ss_pred             CCeEEcChhhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeE
Q 018270           23 DDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTI  100 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l  100 (358)
                      ..+..++..++++.++  ++++++|.||++|||+|+.+.|.|.++++++.+ .++.++.||++++++++++|||.++||+
T Consensus        11 ~g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~-~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~   89 (119)
T d2es7a1          11 RGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQ-FDWQVAVADLEQSEAIGDRFNVRRFPAT   89 (119)
T ss_dssp             TTCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTT-SCCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred             cCCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCC-CceEEEEEECCCCHHHHHhcCcCcceEE
Confidence            4678899999998884  456788999999999999999999999999863 3689999999999999999999999999


Q ss_pred             EEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270          101 QWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++|++|.. ..++.|.++.+++.++++..
T Consensus        90 ~~~~~G~~-v~~~~G~~~~~~l~~~i~~l  117 (119)
T d2es7a1          90 LVFTDGKL-RGALSGIHPWAELLTLMRSI  117 (119)
T ss_dssp             EEESCC-----CEESCCCHHHHHHHHHHH
T ss_pred             EEEEcCeE-EEEeeCCCCHHHHHHHHHHH
Confidence            99987654 48999999999999999764

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.75  E-value=4.7e-19  Score=125.57  Aligned_cols=84  Identities=27%  Similarity=0.397  Sum_probs=74.6

Q ss_pred             CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCH
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  238 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~  238 (358)
                      ++..++.|||+||+||+.+.|.|+++++.+.  ..+.+..+|++++++++++|+|.++||++++.+|     .+.|.++.
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g-----~~~G~~~~   74 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMP--DAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV-----EFIGAPTK   74 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCS--SSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE-----ECCSSSSS
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccc--cccccccccccccccccccCCceEeeEEEEECCc-----EEECCCCH
Confidence            4678899999999999999999999999884  5688999999999999999999999999887654     36799999


Q ss_pred             HHHHHHHHHhc
Q 018270          239 EDFVSFINEKC  249 (358)
Q Consensus       239 ~~l~~~i~~~~  249 (358)
                      ++|.+||++++
T Consensus        75 ~~l~~~i~~~L   85 (85)
T d1fo5a_          75 EALVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999998763

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.75  E-value=1.1e-18  Score=123.69  Aligned_cols=83  Identities=22%  Similarity=0.377  Sum_probs=74.7

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCH
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST  119 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~  119 (358)
                      ++..+++|||+||+||+.+.|.|+++++.++  +.+.+..+|++++++++++|+|.++||++++.+|     ++.|.++.
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g-----~~~G~~~~   74 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMP--DAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV-----EFIGAPTK   74 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCS--SSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE-----ECCSSSSS
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccc--cccccccccccccccccccCCceEeeEEEEECCc-----EEECCCCH
Confidence            5778999999999999999999999999886  5688999999999999999999999999988654     46699999


Q ss_pred             HHHHHHHhcc
Q 018270          120 EALAEYVNNE  129 (358)
Q Consensus       120 ~~i~~~i~~~  129 (358)
                      +++.++|+++
T Consensus        75 ~~l~~~i~~~   84 (85)
T d1fo5a_          75 EALVEAIKKR   84 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999999865

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.74  E-value=3.7e-18  Score=128.07  Aligned_cols=103  Identities=16%  Similarity=0.247  Sum_probs=88.6

Q ss_pred             CCCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----hhhHhhcCccCC
Q 018270           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGY   97 (358)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~   97 (358)
                      ..++...|.+.+.+.++++++++|+||++||+||+.+.|.|.+++..++  ..+.++.++...+    .+++++|+|.++
T Consensus         8 ~~~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~--~~v~~v~~~~~~~~~~~~~~~~~~~V~~~   85 (115)
T d1zmaa1           8 IKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK--AHIYFINSEEPSQLNDLQAFRSRYGIPTV   85 (115)
T ss_dssp             TTTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC--CCCEEEETTCGGGHHHHHHHHHHHTCCSS
T ss_pred             ceeeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhh--hhhhhheeecccccccccccccccccccc
Confidence            3567888999999999999999999999999999999999999999886  4566666655433    468899999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHh
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~  127 (358)
                      ||+++|++|. ...++.|.++.++|.+|+.
T Consensus        86 PTli~~~~gk-~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          86 PGFVHITDGQ-INVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             CEEEEEETTE-EEEECCTTCCHHHHHHHHT
T ss_pred             cEEEEEECCE-EEEEEcCCCCHHHHHHHHc
Confidence            9999998776 4588999999999999984

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=2.2e-18  Score=121.87  Aligned_cols=81  Identities=21%  Similarity=0.381  Sum_probs=71.9

Q ss_pred             EEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHH
Q 018270          162 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF  241 (358)
Q Consensus       162 v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l  241 (358)
                      .++.||+|||+||+.+.|.|+++++.+.  +++.++.+|++++++++++|||.++||++++  |.   .++.|.++.+.|
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~--~~---~~~~G~~~~~~l   76 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIMVDREKAIEYGLMAVPAIAIN--GV---VRFVGAPSREEL   76 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHC--SSCCEEEECTTTCGGGGGGTCSSCSSEEEET--TT---EEEECSSCCHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccc--ccccccccccccchhhHHhcCceEeCEEEEC--Cc---EEEEcCCCHHHH
Confidence            3566999999999999999999999995  5799999999999999999999999998773  32   357899999999


Q ss_pred             HHHHHHhc
Q 018270          242 VSFINEKC  249 (358)
Q Consensus       242 ~~~i~~~~  249 (358)
                      .+||++.+
T Consensus        77 ~~~i~~~l   84 (85)
T d1nhoa_          77 FEAINDEM   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99999864

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.73  E-value=1.2e-17  Score=125.35  Aligned_cols=99  Identities=17%  Similarity=0.266  Sum_probs=84.9

Q ss_pred             ceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcCCCcccE
Q 018270          143 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPT  218 (358)
Q Consensus       143 v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~v~~~Pt  218 (358)
                      +...+.+.+.+.+ +.+++++|+||+|||++|+.+.|.|.++++.+.  ..+.++.++...+    ++++++|+|.++||
T Consensus        11 ~~~~t~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~--~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1          11 LEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETK--AHIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             SEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC--CCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeeCCHHHHHHHH-hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhh--hhhhhheeecccccccccccccccccccccE
Confidence            5566778888888 788999999999999999999999999999885  4566766664433    47899999999999


Q ss_pred             EEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          219 LKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       219 i~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                      +++|++| +...++.|..+.++|.+||
T Consensus        88 li~~~~g-k~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          88 FVHITDG-QINVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             EEEEETT-EEEEECCTTCCHHHHHHHH
T ss_pred             EEEEECC-EEEEEEcCCCCHHHHHHHH
Confidence            9999977 4778899999999999997

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=9.4e-18  Score=118.55  Aligned_cols=81  Identities=22%  Similarity=0.341  Sum_probs=71.9

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHH
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL  122 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i  122 (358)
                      .++.|||+||+||+.+.|.|++++++++  +++.++.+|++++++++++|||.++||++++..     .++.|.++.+.+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~-----~~~~G~~~~~~l   76 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIMVDREKAIEYGLMAVPAIAINGV-----VRFVGAPSREEL   76 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHC--SSCCEEEECTTTCGGGGGGTCSSCSSEEEETTT-----EEEECSSCCHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccc--ccccccccccccchhhHHhcCceEeCEEEECCc-----EEEEcCCCHHHH
Confidence            3556999999999999999999999997  569999999999999999999999999877432     468899999999


Q ss_pred             HHHHhccC
Q 018270          123 AEYVNNEG  130 (358)
Q Consensus       123 ~~~i~~~~  130 (358)
                      .++|++..
T Consensus        77 ~~~i~~~l   84 (85)
T d1nhoa_          77 FEAINDEM   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99998753

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=6.8e-17  Score=121.61  Aligned_cols=100  Identities=19%  Similarity=0.365  Sum_probs=76.6

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc----cchhhHhhcCccCCCeEEE
Q 018270           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD----EHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        29 ~~~~f~~~~--~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~i~~~P~l~~  102 (358)
                      +.++++..+  .++++++|.|||+||++|+.+.|.+....+..+...++.+..+|..    .+.+++++|+|.++||+++
T Consensus         9 ~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~   88 (117)
T d2fwha1           9 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILF   88 (117)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEE
T ss_pred             CHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEE
Confidence            446666666  5688999999999999999999998433332222245666666654    4567899999999999999


Q ss_pred             ccCCCCCc--ccccCCCCHHHHHHHHhc
Q 018270          103 FPKGSLEP--KKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       103 ~~~~~~~~--~~~~g~~~~~~i~~~i~~  128 (358)
                      |+++|...  .++.|.++++++.++|++
T Consensus        89 ~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          89 FDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             ECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             EeCCCcEEecccccccCCHHHHHHHHhc
Confidence            98766543  356799999999999975

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.9e-17  Score=120.47  Aligned_cols=99  Identities=13%  Similarity=0.206  Sum_probs=79.9

Q ss_pred             eEEcChhhHHHHh--cCCCcEEEEEECC-------CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-------cchhh
Q 018270           25 VVVLTEDNFEKEV--GQDRGALVEFYAP-------WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-------EHKSL   88 (358)
Q Consensus        25 v~~l~~~~f~~~~--~~~~~~lv~fya~-------~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------~~~~l   88 (358)
                      +...+.++|.+++  .++++++|+|||+       ||+||+.+.|.+.++++.++  +++.|+.||++       .+..+
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~--~~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS--EGCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC--TTEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcC--CceEEEEEECCCCcccchhhhhH
Confidence            4556778899888  4567999999995       99999999999999999886  56999999984       45668


Q ss_pred             HhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHh
Q 018270           89 CSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus        89 ~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~  127 (358)
                      +++|+|.++||+++|++|+.. ..+.+ .+.+-+..|++
T Consensus        82 ~~~~~V~~iPT~i~~~~g~~l-~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          82 RKNLKVTAVPTLLKYGTPQKL-VESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHHCCCSSSEEEETTSSCEE-EGGGG-GCHHHHHHHHH
T ss_pred             HHhCCeEEEEEEEEEECCeEE-eeeec-CCHHHHHHHhc
Confidence            999999999999999887644 45544 45666666664

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=5.1e-17  Score=122.30  Aligned_cols=100  Identities=23%  Similarity=0.431  Sum_probs=75.5

Q ss_pred             cccHHHHHh-cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc----ccHHHHHhcCCCcccEEEEE
Q 018270          148 ADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD----KYKDLAEKYGVSGFPTLKFF  222 (358)
Q Consensus       148 ~~~f~~~~~-~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pti~~~  222 (358)
                      .++++..+. .++++++|.|||+||++|+.+.|.+...++......++.+..+|++    .+.+++++|+|.++||+++|
T Consensus        10 ~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~   89 (117)
T d2fwha1          10 VDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFF   89 (117)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEEE
Confidence            345555443 4678999999999999999999987544443322245677777754    45679999999999999999


Q ss_pred             eCCCcce--eeecCCCCHHHHHHHHHH
Q 018270          223 PKGNKDG--EEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       223 ~~g~~~~--~~~~g~~~~~~l~~~i~~  247 (358)
                      .++|+..  .++.|.+++++|.++|++
T Consensus        90 ~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          90 DGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             CTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             eCCCcEEecccccccCCHHHHHHHHhc
Confidence            7655433  367899999999999986

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.66  E-value=2.9e-16  Score=113.24  Aligned_cols=81  Identities=17%  Similarity=0.328  Sum_probs=70.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD  237 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~  237 (358)
                      .+...++.|+++||+||+.+.|.+++++..+   +++.+..+|++.+++++++|||.++||+++  +| +  ..+.|.++
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~---~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng-~--~~~~G~~~   85 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLN---PRIKHTAIDGGTFQNEITERNVMGVPAVFV--NG-K--EFGQGRMT   85 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHC---TTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TT-E--EEEESCCC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhC---CceEEEEEecccchHHHhhcccccccEEEE--CC-E--EEEecCCC
Confidence            3456688899999999999999999999875   579999999999999999999999999854  44 2  24789999


Q ss_pred             HHHHHHHHH
Q 018270          238 LEDFVSFIN  246 (358)
Q Consensus       238 ~~~l~~~i~  246 (358)
                      .++|+++|.
T Consensus        86 ~~~l~~~le   94 (96)
T d1hyua4          86 LTEIVAKVD   94 (96)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999999873

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.66  E-value=2.1e-16  Score=113.95  Aligned_cols=90  Identities=11%  Similarity=0.229  Sum_probs=75.2

Q ss_pred             hhHHHHhc--CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCC
Q 018270           31 DNFEKEVG--QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL  108 (358)
Q Consensus        31 ~~f~~~~~--~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~  108 (358)
                      +++.+.++  ++...++.||++|||||+.+.|.|++++...   +++.+..+|++++++++.+|+|.++||+++  +|. 
T Consensus         4 ~~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~---~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~-   77 (96)
T d1hyua4           4 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN---PRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGK-   77 (96)
T ss_dssp             HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC---TTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTE-
T ss_pred             HHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC---CceEEEEEecccchHHHhhcccccccEEEE--CCE-
Confidence            45555553  3455788899999999999999999999875   679999999999999999999999999865  332 


Q ss_pred             CcccccCCCCHHHHHHHHhc
Q 018270          109 EPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus       109 ~~~~~~g~~~~~~i~~~i~~  128 (358)
                        ..+.|.++.++|.++|..
T Consensus        78 --~~~~G~~~~~~l~~~les   95 (96)
T d1hyua4          78 --EFGQGRMTLTEIVAKVDT   95 (96)
T ss_dssp             --EEEESCCCHHHHHHHHCC
T ss_pred             --EEEecCCCHHHHHHHHhC
Confidence              347899999999998863

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.7e-16  Score=117.26  Aligned_cols=100  Identities=18%  Similarity=0.273  Sum_probs=76.8

Q ss_pred             ceEcCcccHHHHHhc-CCCcEEEEEcCC-------CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-------ccHHH
Q 018270          143 VVVLTADNFDEIVLD-KSKDVLVEFYAP-------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-------KYKDL  207 (358)
Q Consensus       143 v~~l~~~~f~~~~~~-~~~~v~v~f~a~-------~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-------~~~~l  207 (358)
                      +...+.++|.+.+.+ ++++++|.|||+       ||+||+.+.|.+.++++.+.  +++.|+.||++       .+..+
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~--~~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS--EGCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC--TTEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcC--CceEEEEEECCCCcccchhhhhH
Confidence            344566788888753 457999999994       99999999999999999885  56999999985       45569


Q ss_pred             HHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          208 AEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       208 ~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                      +++|+|.++||+++|.+|++ ...+.+ .+.+.+..|++
T Consensus        82 ~~~~~V~~iPT~i~~~~g~~-l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          82 RKNLKVTAVPTLLKYGTPQK-LVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHHCCCSSSEEEETTSSCE-EEGGGG-GCHHHHHHHHH
T ss_pred             HHhCCeEEEEEEEEEECCeE-Eeeeec-CCHHHHHHHhc
Confidence            99999999999999998864 233332 44555555554

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=9e-14  Score=107.06  Aligned_cols=97  Identities=21%  Similarity=0.227  Sum_probs=72.9

Q ss_pred             ccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------cHHH
Q 018270          149 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDL  207 (358)
Q Consensus       149 ~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------~~~l  207 (358)
                      ..+..-...++++++|.|||+||+||+..+|.+.++++..   ..+..+.++.+.                     +..+
T Consensus        10 ~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~---~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   86 (136)
T d1z5ye1          10 QFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQG---IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGML   86 (136)
T ss_dssp             CEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTT---CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHH
T ss_pred             cEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhhh---hhhcccccccchhhhHHHHHHcCCccceeecccchhH
Confidence            3344333357899999999999999999999999987632   234444333321                     1268


Q ss_pred             HHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          208 AEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       208 ~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ...|++.++|+.+++..+|+....+.|..+.+++.+.|++.
T Consensus        87 ~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          87 GLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL  127 (136)
T ss_dssp             HHHHTCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHH
T ss_pred             HHhcccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHH
Confidence            89999999999999988877777889999988888777653

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=1.6e-13  Score=113.73  Aligned_cols=104  Identities=21%  Similarity=0.291  Sum_probs=84.0

Q ss_pred             CCCceEcC-cccHHHHHhcCC--CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcc
Q 018270          140 PSNVVVLT-ADNFDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF  216 (358)
Q Consensus       140 ~~~v~~l~-~~~f~~~~~~~~--~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  216 (358)
                      -..+.+++ .++|.+.+...+  ..|+|.||+|||++|+.+.|.+..+|..|   +++.|++||++..+ +..+|+|.++
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~---~~vkF~ki~~~~~~-~~~~~~i~~l  173 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY---PMVKFCKIRASNTG-AGDRFSSDVL  173 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC---TTSEEEEEEHHHHT-CSTTSCGGGC
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhc---ccceEEEEccccch-hHHhCCCCCC
Confidence            35688886 578988885544  46899999999999999999999999988   57999999998764 6689999999


Q ss_pred             cEEEEEeCCCcceeeecC-------CCCHHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKDGEEYGG-------GRDLEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g-------~~~~~~l~~~i~~~  248 (358)
                      ||+++|++|. ....+.|       ..+.++|..||.++
T Consensus       174 Ptl~~yk~G~-~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         174 PTLLVYKGGE-LISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             SEEEEEETTE-EEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CeEEEEECCE-EEEEEECccccccccCCHHHHHHHHHHc
Confidence            9999999884 3333433       35778888888653

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.41  E-value=6.1e-13  Score=103.23  Aligned_cols=104  Identities=15%  Similarity=0.253  Sum_probs=81.8

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------   83 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------   83 (358)
                      +...+.+.+.-...++++++|.|||+||++|+...|.+.++.++++.. .+.+..+..+                     
T Consensus         8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (143)
T d2fy6a1           8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLNYP   86 (143)
T ss_dssp             CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccC-CcEEEEEeeeecccccchhhhhhhhhhcCCc
Confidence            444555555444467899999999999999999999999999988753 3555444431                     


Q ss_pred             -------cchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           84 -------EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        84 -------~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                             .+.++++.|++.++|++++++..|.....+.|..+.+.+.+++++.
T Consensus        87 ~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1          87 KLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             ccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence                   2335789999999999999988887767888999999999999864

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=2.4e-13  Score=112.64  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=83.1

Q ss_pred             CCeEEcC-hhhHHHHhc---CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCC
Q 018270           23 DDVVVLT-EDNFEKEVG---QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP   98 (358)
Q Consensus        23 ~~v~~l~-~~~f~~~~~---~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (358)
                      ..+.+++ .++|.+.+.   .+.+|+|+||++||++|+.+.|.|.+++..+   +.+.|++||++..+ +...|++.++|
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~---~~vkF~ki~~~~~~-~~~~~~i~~lP  174 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY---PMVKFCKIRASNTG-AGDRFSSDVLP  174 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC---TTSEEEEEEHHHHT-CSTTSCGGGCS
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhc---ccceEEEEccccch-hHHhCCCCCCC
Confidence            4688885 578998883   3446899999999999999999999999998   66999999998765 66899999999


Q ss_pred             eEEEccCCCCCcccccC-------CCCHHHHHHHHhccC
Q 018270           99 TIQWFPKGSLEPKKYEG-------PRSTEALAEYVNNEG  130 (358)
Q Consensus        99 ~l~~~~~~~~~~~~~~g-------~~~~~~i~~~i~~~~  130 (358)
                      |+++|++|... ..+.|       ..+.++|..+|.++.
T Consensus       175 tl~~yk~G~~v-~~~vg~~~~~g~~~~~~~lE~~L~~~g  212 (217)
T d2trcp_         175 TLLVYKGGELI-SNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEEEETTEEE-EEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             eEEEEECCEEE-EEEECccccccccCCHHHHHHHHHHcC
Confidence            99999887633 33322       346788888887653

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=7.3e-13  Score=101.83  Aligned_cols=91  Identities=18%  Similarity=0.199  Sum_probs=69.9

Q ss_pred             HhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC---------------------ccchhhHhhcCc
Q 018270           36 EVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC---------------------DEHKSLCSKYGV   94 (358)
Q Consensus        36 ~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~---------------------~~~~~l~~~~~i   94 (358)
                      .+.++++++|.|||+||++|+...|.+.++....   -.+....++.                     +.+..+++.|++
T Consensus        16 ~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~---~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v   92 (136)
T d1z5ye1          16 VLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQG---IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV   92 (136)
T ss_dssp             HHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTT---CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTC
T ss_pred             HHcCCCEEEEEEEcCcCCCcCccccchhhhhhhh---hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhccc
Confidence            3458999999999999999999999999887532   1222222221                     223457889999


Q ss_pred             cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           95 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        95 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      .++|++++++++|.....+.|..+.+++.+.|.+.
T Consensus        93 ~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          93 YGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL  127 (136)
T ss_dssp             CSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHH
T ss_pred             CCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHH
Confidence            99999999998887767889999998888777654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=9.2e-13  Score=100.99  Aligned_cols=87  Identities=24%  Similarity=0.375  Sum_probs=70.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-----------------------cchhhHhhcCcc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-----------------------EHKSLCSKYGVQ   95 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----------------------~~~~l~~~~~i~   95 (358)
                      ++++++|.||++||++|+...|.+.++.+.+++   +.++.++..                       .+..+.+.|++.
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~---~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~  100 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE---VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT  100 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCC
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc---cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCC
Confidence            579999999999999999999999999998853   333334332                       233578889999


Q ss_pred             CCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           96 GYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        96 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      ++|+++++++++.. ..+.|..+.+++.+.|+..
T Consensus       101 ~~P~~~iiD~~G~i-~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         101 QQPAYAFVDPHGNV-DVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             SSSEEEEECTTCCE-EEEESCCCHHHHHHHHHHH
T ss_pred             ccCeEEEECCCCeE-EEEECCCCHHHHHHHHHhh
Confidence            99999999888764 4567899999999988754

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.36  E-value=1.1e-12  Score=101.75  Aligned_cols=90  Identities=19%  Similarity=0.341  Sum_probs=74.1

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc----------------------------ccHHHH
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD----------------------------KYKDLA  208 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~----------------------------~~~~l~  208 (358)
                      .+++++++.|||+||++|+...|.+.++.++++.. ++.++.+..+                            .+..++
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   99 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIA   99 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHH
T ss_pred             hCCCEEEEEEECCCCccccccCcchhhhhhhhccC-CcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHH
Confidence            46799999999999999999999999999988643 4554444422                            123789


Q ss_pred             HhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          209 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       209 ~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      +.||+.++|+++++...|+....+.|..+.+.+.++|++
T Consensus       100 ~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  138 (143)
T d2fy6a1         100 QSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRD  138 (143)
T ss_dssp             HHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHC
T ss_pred             HHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHH
Confidence            999999999999998777777788999999999999975

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=100.03  Aligned_cols=83  Identities=13%  Similarity=0.210  Sum_probs=64.4

Q ss_pred             HHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhc-CccCCCeEEEccCCCCCcc
Q 018270           33 FEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKY-GVQGYPTIQWFPKGSLEPK  111 (358)
Q Consensus        33 f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~-~i~~~P~l~~~~~~~~~~~  111 (358)
                      +..+.++++|++|.|||+||++|+.+.|.+.+..+..+...++.++.+|+++....+..+ ...++|+++++.+++....
T Consensus        18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~   97 (135)
T d1sena_          18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHP   97 (135)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCT
T ss_pred             HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEE
Confidence            445557899999999999999999999999766654443367889999999888776554 4557899999988776544


Q ss_pred             cccC
Q 018270          112 KYEG  115 (358)
Q Consensus       112 ~~~g  115 (358)
                      .+.|
T Consensus        98 ~~~g  101 (135)
T d1sena_          98 EIIN  101 (135)
T ss_dssp             TCCC
T ss_pred             EecC
Confidence            4444

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=3.7e-12  Score=97.50  Aligned_cols=87  Identities=21%  Similarity=0.405  Sum_probs=69.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-----------------------cHHHHHhcCCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGVS  214 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~v~  214 (358)
                      .+++++|.||++||++|+...|.+.++++.+.   ++.++.+...+                       +..+.+.||+.
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~---~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~  100 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT  100 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCC
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhc---ccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCC
Confidence            57899999999999999999999999999885   23333333321                       12789999999


Q ss_pred             cccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          215 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       215 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      ++|+.+++..+++ ...+.|..+.++|.+.|++.
T Consensus       101 ~~P~~~iiD~~G~-i~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         101 QQPAYAFVDPHGN-VDVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             SSSEEEEECTTCC-EEEEESCCCHHHHHHHHHHH
T ss_pred             ccCeEEEECCCCe-EEEEECCCCHHHHHHHHHhh
Confidence            9999999977665 34467889999999988764

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.33  E-value=2.1e-12  Score=100.03  Aligned_cols=68  Identities=22%  Similarity=0.323  Sum_probs=59.1

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH------------------------HHHHhcCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK------------------------DLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~v  213 (358)
                      .+++++|.|||+||+||+...|.+.++.+.++.+.++.++.|..++..                        .+.+.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            689999999999999999999999999999987677888888776432                        47889999


Q ss_pred             CcccEEEEEeCC
Q 018270          214 SGFPTLKFFPKG  225 (358)
Q Consensus       214 ~~~Pti~~~~~g  225 (358)
                      .++||++++.+.
T Consensus       107 ~~iPt~~lid~~  118 (144)
T d1i5ga_         107 KSIPTLVGVEAD  118 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CCcCEEEEEeCC
Confidence            999999999863

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.33  E-value=8.6e-12  Score=96.54  Aligned_cols=98  Identities=16%  Similarity=0.270  Sum_probs=75.4

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--c---------------------
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--K---------------------  203 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~---------------------  203 (358)
                      +++...... .+++++++.||++||++|+...|.+.++.+.++..  +.++.++.+  .                     
T Consensus        18 ng~~~~~~~-~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~   94 (143)
T d2b5xa1          18 NGEVTREQL-IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ--LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPI   94 (143)
T ss_dssp             SCCCCHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCE
T ss_pred             CCeEecHHH-hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc--ccceeEEeeccccccchhhhhhHHHhhccCccc
Confidence            444333333 47789999999999999999999999999999743  444444332  1                     


Q ss_pred             ----cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          204 ----YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       204 ----~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                          ...+++.|++.++|+++++...+.....+.|..+.+.+.+-|++
T Consensus        95 ~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          95 FVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             EECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             cccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence                11588899999999999998777777788899998988888765

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=5e-12  Score=96.71  Aligned_cols=99  Identities=19%  Similarity=0.380  Sum_probs=73.9

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------
Q 018270           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------   84 (358)
Q Consensus        27 ~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------   84 (358)
                      .++.+.+...--.+++++|.||++||++|+...|.+.++.+.++   .+.++.|+.+.                      
T Consensus        11 ~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~   87 (134)
T d1lu4a_          11 TLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDA   87 (134)
T ss_dssp             BTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECT
T ss_pred             CCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc---cccccccccccchhhhhhhhhhhccccceeeCc
Confidence            34444443222257999999999999999999999999998764   46666666543                      


Q ss_pred             chhhHhhcCccCCCeEEEccCCCCCc--ccccCCCCHHHHHHHHhc
Q 018270           85 HKSLCSKYGVQGYPTIQWFPKGSLEP--KKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        85 ~~~l~~~~~i~~~P~l~~~~~~~~~~--~~~~g~~~~~~i~~~i~~  128 (358)
                      +..+++.|++.++|++++++++|...  ....|..+.+++.+.|.+
T Consensus        88 ~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          88 DGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             TSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             hHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            23578889999999999998877542  234578889999887764

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.30  E-value=3e-12  Score=99.29  Aligned_cols=89  Identities=20%  Similarity=0.281  Sum_probs=70.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc---------------------ccHHHHHhcCCCcc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------KYKDLAEKYGVSGF  216 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~v~~~  216 (358)
                      ++++++|.||++||++|+...|.+.++.+.+.  ..+..+.++-+                     .+..+.+.|++.++
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR--FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT--SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC--ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc
Confidence            67999999999999999999999998877652  23333333222                     12368999999999


Q ss_pred             cEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                      |+.+++...|+....+.|..+.+++.+.|.+.
T Consensus       108 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~  139 (144)
T d1knga_         108 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQ  139 (144)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred             ceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            99999987777777889999999998887664

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.30  E-value=4.9e-12  Score=97.95  Aligned_cols=98  Identities=15%  Similarity=0.273  Sum_probs=76.6

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-------------------------
Q 018270           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-------------------------   83 (358)
Q Consensus        29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------------------------   83 (358)
                      +.+.......++++++|+||++||++|+...|.+.++.+.+++  .+.++.|+.+                         
T Consensus        18 ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~   95 (143)
T d2b5xa1          18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIF   95 (143)
T ss_dssp             SCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEE
T ss_pred             CCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccceeEEeeccccccchhhhhhHHHhhccCcccc
Confidence            4444444456789999999999999999999999999999974  4555555442                         


Q ss_pred             --cchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           84 --EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        84 --~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                        ....+++.|++.++|+++++++.+.....+.|..+.+.+.+.|++
T Consensus        96 ~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          96 VDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             ECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             ccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence              112467889999999999998888766778898888888887764

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=8.8e-12  Score=95.34  Aligned_cols=87  Identities=20%  Similarity=0.386  Sum_probs=69.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----------------------HHHHHhcCCCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----------------------KDLAEKYGVSG  215 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------------------~~l~~~~~v~~  215 (358)
                      .+++++|.||++||++|+...|.+.+++..+.   ++.++.++.+++                      ..+++.||+.+
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~   99 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW   99 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhc---cccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCc
Confidence            57899999999999999999999999998763   466666665432                      26889999999


Q ss_pred             ccEEEEEeCCCccee--eecCCCCHHHHHHHHHH
Q 018270          216 FPTLKFFPKGNKDGE--EYGGGRDLEDFVSFINE  247 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~--~~~g~~~~~~l~~~i~~  247 (358)
                      +|+++++..+++...  ...|..+.+++.+-|..
T Consensus       100 ~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         100 QPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             SSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             CCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            999999987665332  34577899999888764

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.1e-12  Score=97.36  Aligned_cols=106  Identities=12%  Similarity=0.147  Sum_probs=77.4

Q ss_pred             ccHHHHH---hcCCCcEEEEEcCCCCcccchhhh-hH--HHHHHHhcCCCCeEEEEEeCccc--HHHHHhcCCCcccEEE
Q 018270          149 DNFDEIV---LDKSKDVLVEFYAPWCGHCKNLAP-TY--EKVAAAFTLEDDVVVANLDADKY--KDLAEKYGVSGFPTLK  220 (358)
Q Consensus       149 ~~f~~~~---~~~~~~v~v~f~a~~C~~c~~~~~-~~--~~la~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pti~  220 (358)
                      ..|++..   ...+++++|+|+++||++|+.+.. +|  .++.+.+.  .+++++.+|.+..  ..++++|+|.++|+++
T Consensus        29 ~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~--~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~  106 (147)
T d2dlxa1          29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR--EHFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (147)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH--HTEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             CCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHh--hheeEeeecccchhhhhhhhheecCceeEEE
Confidence            3444443   456899999999999999999855 22  23333332  4688999997744  7899999999999999


Q ss_pred             EEeCCCcceeeecCCCCHHHHHHHHHHhcCCCCCCC
Q 018270          221 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGK  256 (358)
Q Consensus       221 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~  256 (358)
                      ++.+.+.+.++..|..++++++..|++.++.+....
T Consensus       107 ~idp~~ge~v~~~~~~~~~~fl~~L~~fl~~~~~~~  142 (147)
T d2dlxa1         107 ILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLD  142 (147)
T ss_dssp             EECTTTCCCCEEESSCCHHHHHHHHHHHHHHTCSCS
T ss_pred             EEeCCCCeEecccCCCCHHHHHHHHHHHHhhCCCCc
Confidence            997532233455567899999999998887665443

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.8e-12  Score=99.44  Aligned_cols=88  Identities=18%  Similarity=0.312  Sum_probs=64.5

Q ss_pred             CcccHHHHH---hcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhc-CCCcccEEEEE
Q 018270          147 TADNFDEIV---LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-GVSGFPTLKFF  222 (358)
Q Consensus       147 ~~~~f~~~~---~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~-~v~~~Pti~~~  222 (358)
                      ...+|++.+   ...+++++|.|||+||++|+.+.|.+.+..+......+++.+.+|.+....++..+ ...++|+++++
T Consensus        10 ~w~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~   89 (135)
T d1sena_          10 HWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFL   89 (135)
T ss_dssp             CBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEE
T ss_pred             eeeEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEE
Confidence            334455533   35789999999999999999999998877665544468999999998776666544 34568999999


Q ss_pred             eCCCcceeeecC
Q 018270          223 PKGNKDGEEYGG  234 (358)
Q Consensus       223 ~~g~~~~~~~~g  234 (358)
                      .++++....+.|
T Consensus        90 d~~G~~~~~~~g  101 (135)
T d1sena_          90 DPSGKVHPEIIN  101 (135)
T ss_dssp             CTTSCBCTTCCC
T ss_pred             CCCCeEEEEecC
Confidence            776654433444

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.27  E-value=4.3e-12  Score=98.40  Aligned_cols=89  Identities=21%  Similarity=0.338  Sum_probs=69.8

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC---------------------ccchhhHhhcCccCC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC---------------------DEHKSLCSKYGVQGY   97 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~---------------------~~~~~l~~~~~i~~~   97 (358)
                      ++++++|+||++||++|+...|.+.++.+.++  ..+..+.++.                     +.+..+.+.|++.++
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR--FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT--SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC--ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc
Confidence            57999999999999999999999998877653  2222222211                     224468899999999


Q ss_pred             CeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           98 PTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        98 P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                      |+++++++.|.....+.|..+.+++.+.|.+.
T Consensus       108 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~  139 (144)
T d1knga_         108 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQ  139 (144)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred             ceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            99999998887777888999999988877653

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.26  E-value=7.9e-12  Score=96.72  Aligned_cols=71  Identities=17%  Similarity=0.304  Sum_probs=59.6

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch------------------------hhHhhcCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK------------------------SLCSKYGV   94 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~i   94 (358)
                      ++++++|+|||+||++|+...|.+.++.+++.+...+.++.|+.+.+.                        .+++.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            589999999999999999999999999999986567888888776432                        25778999


Q ss_pred             cCCCeEEEccCC-CCC
Q 018270           95 QGYPTIQWFPKG-SLE  109 (358)
Q Consensus        95 ~~~P~l~~~~~~-~~~  109 (358)
                      .++|++++++++ +..
T Consensus       107 ~~iPt~~lid~~~G~v  122 (144)
T d1i5ga_         107 KSIPTLVGVEADSGNI  122 (144)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CCcCEEEEEeCCCCEE
Confidence            999999999874 443

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-11  Score=95.57  Aligned_cols=97  Identities=11%  Similarity=0.104  Sum_probs=75.5

Q ss_pred             hhHHHHh----cCCCcEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeCccc--hhhHhhcCccCCCeEE
Q 018270           31 DNFEKEV----GQDRGALVEFYAPWCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEH--KSLCSKYGVQGYPTIQ  101 (358)
Q Consensus        31 ~~f~~~~----~~~~~~lv~fya~~c~~C~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~P~l~  101 (358)
                      .+|++++    +++|+++|+|+++||++|+.+....   .++.+.++  ..+.++.+|.+..  ..++++|++.++|++.
T Consensus        29 ~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~--~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~  106 (147)
T d2dlxa1          29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR--EHFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (147)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH--HTEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             CCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHh--hheeEeeecccchhhhhhhhheecCceeEEE
Confidence            4455544    6789999999999999999998855   56666665  4588888887654  7889999999999999


Q ss_pred             EccC-CCCCcccccCCCCHHHHHHHHhccC
Q 018270          102 WFPK-GSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus       102 ~~~~-~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      ++.+ ++.. .+.-|..+++++...+++..
T Consensus       107 ~idp~~ge~-v~~~~~~~~~~fl~~L~~fl  135 (147)
T d2dlxa1         107 ILDPRTGQK-LVEWHQLDVSSFLDQVTGFL  135 (147)
T ss_dssp             EECTTTCCC-CEEESSCCHHHHHHHHHHHH
T ss_pred             EEeCCCCeE-ecccCCCCHHHHHHHHHHHH
Confidence            9986 3444 45557789999887777654

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.25  E-value=9e-12  Score=96.51  Aligned_cols=68  Identities=24%  Similarity=0.510  Sum_probs=59.2

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH------------------------HHHHhcCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK------------------------DLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~v  213 (358)
                      .+++++|.|||+||++|+...|.+.++.+++..+.++.++.|..++..                        .+.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            689999999999999999999999999999976667888888776421                        58889999


Q ss_pred             CcccEEEEEeCC
Q 018270          214 SGFPTLKFFPKG  225 (358)
Q Consensus       214 ~~~Pti~~~~~g  225 (358)
                      .++|+++++...
T Consensus       107 ~~~Pt~~lID~~  118 (144)
T d1o73a_         107 ESIPTLITINAD  118 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CcCCEEEEEECC
Confidence            999999999864

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=4.6e-12  Score=91.30  Aligned_cols=85  Identities=13%  Similarity=0.221  Sum_probs=71.0

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      +..-+++++|+++||++|+.+.+.+++++..|    .+.++.+|.+.++++.++|++. +|++++  +|..   ...|..
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~----~~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~---~~~g~~   82 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTWYERYKFD-IPVFHL--NGQF---LMMHRV   82 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSS----EEEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSE---EEESSC
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhc----ceEEEecccccCHHHHHHhccc-CCceee--cCce---EEeCCC
Confidence            45678999999999999999999999998776    3678889999999999999997 997654  4532   256889


Q ss_pred             CHHHHHHHHHHhcCC
Q 018270          237 DLEDFVSFINEKCGT  251 (358)
Q Consensus       237 ~~~~l~~~i~~~~~~  251 (358)
                      +.+.|.++|++..+.
T Consensus        83 d~~~L~~~L~~l~~~   97 (100)
T d1wjka_          83 NTSKLEKQLRKLSGP   97 (100)
T ss_dssp             CHHHHHHHHHSSSCS
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999876654

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.21  E-value=2.5e-11  Score=93.12  Aligned_cols=89  Identities=25%  Similarity=0.441  Sum_probs=74.3

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc----------------------hhhHhhcCccC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----------------------KSLCSKYGVQG   96 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------~~l~~~~~i~~   96 (358)
                      .+++++|.||++||++|+...|.+.++.+.+.+. .+.++.++++++                      ..+++.|++.+
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  102 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  102 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEeeccccceeeccccccccccccccc-ccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhccc
Confidence            6789999999999999999999999999998753 577777765432                      24678899999


Q ss_pred             CCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           97 YPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        97 ~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                      +|++++++.++....++.|..+.+.+.++++.
T Consensus       103 ~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_         103 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred             cceEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            99999999988776778899998888887753

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.20  E-value=2.8e-11  Score=93.70  Aligned_cols=71  Identities=21%  Similarity=0.420  Sum_probs=59.4

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch------------------------hhHhhcCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK------------------------SLCSKYGV   94 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~i   94 (358)
                      ++++++|+|||+||++|+...|.+.++.+++.....+.++.|+.++..                        ++.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            589999999999999999999999999999965567888877775432                        36788999


Q ss_pred             cCCCeEEEccCC-CCC
Q 018270           95 QGYPTIQWFPKG-SLE  109 (358)
Q Consensus        95 ~~~P~l~~~~~~-~~~  109 (358)
                      .++|++++++++ +..
T Consensus       107 ~~~Pt~~lID~~~G~I  122 (144)
T d1o73a_         107 ESIPTLITINADTGAI  122 (144)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CcCCEEEEEECCCCEE
Confidence            999999999875 543

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.19  E-value=4.6e-11  Score=91.57  Aligned_cols=89  Identities=21%  Similarity=0.392  Sum_probs=74.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----------------------HHHHHhcCCCc
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----------------------KDLAEKYGVSG  215 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------------------~~l~~~~~v~~  215 (358)
                      .+++++|.||++||++|+...|.+.++.+.+... ++.++.++.+++                      ..+++.|++.+
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  102 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  102 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEeeccccceeeccccccccccccccc-ccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhccc
Confidence            6789999999999999999999999999998643 577776665432                      27889999999


Q ss_pred             ccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          216 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       216 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                      +|+++++..++....++.|..+.+.+.++++.
T Consensus       103 ~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_         103 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred             cceEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            99999998888777788899998888887753

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.16  E-value=5e-11  Score=92.22  Aligned_cols=68  Identities=22%  Similarity=0.350  Sum_probs=59.0

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc------------------------HHHHHhcCC
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY------------------------KDLAEKYGV  213 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~v  213 (358)
                      .+++++|.||++||++|+...|.+.++++.+....++.++.++.++.                        ..+.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            68899999999999999999999999999997666787777776632                        268899999


Q ss_pred             CcccEEEEEeCC
Q 018270          214 SGFPTLKFFPKG  225 (358)
Q Consensus       214 ~~~Pti~~~~~g  225 (358)
                      .++|+++++...
T Consensus       105 ~~~Pt~~liD~~  116 (144)
T d1o8xa_         105 ESIPTLIGVDAD  116 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CcCCEEEEEeCC
Confidence            999999999854

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=4.1e-11  Score=86.17  Aligned_cols=85  Identities=14%  Similarity=0.198  Sum_probs=71.0

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCC
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR  117 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~  117 (358)
                      +...|+++.|+++||++|+.+.+.++++...+.    ..++.+|.++++++.++|++. +|++++  +|.   ....|..
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~----~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~---~~~~g~~   82 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI----LQEVDITLPENSTWYERYKFD-IPVFHL--NGQ---FLMMHRV   82 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE----EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSS---EEEESSC
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc----eEEEecccccCHHHHHHhccc-CCceee--cCc---eEEeCCC
Confidence            466789999999999999999999999887664    567889999999999999987 998765  333   2355789


Q ss_pred             CHHHHHHHHhccCCC
Q 018270          118 STEALAEYVNNEGGT  132 (358)
Q Consensus       118 ~~~~i~~~i~~~~~~  132 (358)
                      +.+.|.++|++..+.
T Consensus        83 d~~~L~~~L~~l~~~   97 (100)
T d1wjka_          83 NTSKLEKQLRKLSGP   97 (100)
T ss_dssp             CHHHHHHHHHSSSCS
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999987653

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.10  E-value=1.3e-10  Score=89.76  Aligned_cols=68  Identities=19%  Similarity=0.380  Sum_probs=58.1

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc------------------------hhhHhhcCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH------------------------KSLCSKYGV   94 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~i   94 (358)
                      .+++++|+||++||++|+...|.+.++.+++.....+.++.++.+.+                        .++.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            57999999999999999999999999999997655677777776532                        247788999


Q ss_pred             cCCCeEEEccCC
Q 018270           95 QGYPTIQWFPKG  106 (358)
Q Consensus        95 ~~~P~l~~~~~~  106 (358)
                      .++|++++++++
T Consensus       105 ~~~Pt~~liD~~  116 (144)
T d1o8xa_         105 ESIPTLIGVDAD  116 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CcCCEEEEEeCC
Confidence            999999999865

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=1.1e-10  Score=94.28  Aligned_cols=75  Identities=19%  Similarity=0.301  Sum_probs=61.1

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-----------------------------cchhhH
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-----------------------------EHKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----------------------------~~~~l~   89 (358)
                      ++++++|.||++||++|+...|.+.+++++|+  +++.+..++..                             .+..++
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~--~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~  108 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYR--GKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  108 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTT--TTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhcc--ccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhc
Confidence            57899999999999999999999999999997  44777666531                             223578


Q ss_pred             hhcCccCCCeEEEccCCCCCcccccCCC
Q 018270           90 SKYGVQGYPTIQWFPKGSLEPKKYEGPR  117 (358)
Q Consensus        90 ~~~~i~~~P~l~~~~~~~~~~~~~~g~~  117 (358)
                      +.|++.++|+.+++++.+.  ..|.|..
T Consensus       109 ~~~~v~~~P~~~liD~~G~--i~y~G~i  134 (187)
T d2cvba1         109 KAYRALRTPEVFLFDERRL--LRYHGRV  134 (187)
T ss_dssp             HHTTCCEESEEEEECTTCB--EEEEECS
T ss_pred             ccccccceeeEEEEcCCCe--EEEEeee
Confidence            8999999999999988774  4676654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.07  E-value=3.5e-10  Score=91.15  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=68.4

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------------------------ccHHHH
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------KYKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------------~~~~l~  208 (358)
                      .+++++|.||++||++|+...|.+.++++.|+.  ++.++.++..                             ....++
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~  108 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  108 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhc
Confidence            578999999999999999999999999999963  4666666531                             012799


Q ss_pred             HhcCCCcccEEEEEeCCCcceeeecCCC----------CHHHHHHHHHHhcCCC
Q 018270          209 EKYGVSGFPTLKFFPKGNKDGEEYGGGR----------DLEDFVSFINEKCGTS  252 (358)
Q Consensus       209 ~~~~v~~~Pti~~~~~g~~~~~~~~g~~----------~~~~l~~~i~~~~~~~  252 (358)
                      +.|++.++|++++++..++  +.|.|..          +...|.+-|+..+...
T Consensus       109 ~~~~v~~~P~~~liD~~G~--i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~  160 (187)
T d2cvba1         109 KAYRALRTPEVFLFDERRL--LRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  160 (187)
T ss_dssp             HHTTCCEESEEEEECTTCB--EEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             ccccccceeeEEEEcCCCe--EEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCC
Confidence            9999999999999987765  4565532          3345666666655433

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.97  E-value=1.1e-09  Score=87.42  Aligned_cols=93  Identities=25%  Similarity=0.443  Sum_probs=68.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCC-CeEEEEEeCccc---H-----------------------HHHHh
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKY---K-----------------------DLAEK  210 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~-~v~~~~vd~~~~---~-----------------------~l~~~  210 (358)
                      .++++++.||++||++|+...+.+.++.+.+.... .++++.+|.+..   .                       .+...
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            67999999999999999999999999999886433 334444443211   1                       23344


Q ss_pred             cCCCcccEEEEEeCCCcceeeecCC--CCHHHHHHHHHHhcC
Q 018270          211 YGVSGFPTLKFFPKGNKDGEEYGGG--RDLEDFVSFINEKCG  250 (358)
Q Consensus       211 ~~v~~~Pti~~~~~g~~~~~~~~g~--~~~~~l~~~i~~~~~  250 (358)
                      |++.++|+.++++..++...++.|.  .+.+++.++|+..+|
T Consensus       135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhcC
Confidence            5677899999998877766677775  466889999887654

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.90  E-value=1.2e-09  Score=86.31  Aligned_cols=85  Identities=9%  Similarity=0.084  Sum_probs=64.2

Q ss_pred             cCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCC---CcccEEEEE
Q 018270          146 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV---SGFPTLKFF  222 (358)
Q Consensus       146 l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pti~~~  222 (358)
                      ++....+++-.-.++.+++.||++||+||+...|.+.++++.+   +++.+..|+.+.+++..++|..   ..+|.++++
T Consensus        41 l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~---~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~  117 (166)
T d1z6na1          41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQ---PNIELAIISKGRAEDDLRQRLALERIAIPLVLVL  117 (166)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC---TTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred             ccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHC---CCCcEEEEECccCHHHHHHHHHhccccccceeec
Confidence            4555555554336778899999999999999999999999987   4677888888888888999844   468888777


Q ss_pred             eCCCcceeeec
Q 018270          223 PKGNKDGEEYG  233 (358)
Q Consensus       223 ~~g~~~~~~~~  233 (358)
                      ..+......+.
T Consensus       118 d~~~~~~~~~~  128 (166)
T d1z6na1         118 DEEFNLLGRFV  128 (166)
T ss_dssp             CTTCCEEEEEE
T ss_pred             Cccchhccccc
Confidence            65544444443

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.85  E-value=3.5e-09  Score=84.49  Aligned_cols=105  Identities=18%  Similarity=0.279  Sum_probs=71.3

Q ss_pred             eEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc--cc---hh------------
Q 018270           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--EH---KS------------   87 (358)
Q Consensus        25 v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~---~~------------   87 (358)
                      +.+++.+.+.-.--.+++++|.||++||++|+...+.+.++.+.+... .+.++.+..+  ..   .+            
T Consensus        41 l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~  119 (176)
T d1jfua_          41 FEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTFLKEANLTRLGY  119 (176)
T ss_dssp             EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT-TEEEEEEECCCSCTTHHHHHHHHTTCCTTCC
T ss_pred             EECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccc-ccccccccccccchhhhhhhHhhhCCcceee
Confidence            344444444322235799999999999999999999999999988653 3444444432  11   11            


Q ss_pred             -----------hHhhcCccCCCeEEEccCCCCCcccccCCC--CHHHHHHHHhccC
Q 018270           88 -----------LCSKYGVQGYPTIQWFPKGSLEPKKYEGPR--STEALAEYVNNEG  130 (358)
Q Consensus        88 -----------l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~--~~~~i~~~i~~~~  130 (358)
                                 +...+++.++|+.++++.++....++.|..  +.+++.++|+..+
T Consensus       120 ~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         120 FNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             EECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             eecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence                       223346778999999988887656777753  5578888887653

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.77  E-value=7.5e-09  Score=81.60  Aligned_cols=84  Identities=10%  Similarity=0.057  Sum_probs=63.7

Q ss_pred             cChhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhc---CccCCCeEEEc
Q 018270           28 LTEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKY---GVQGYPTIQWF  103 (358)
Q Consensus        28 l~~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~P~l~~~  103 (358)
                      ++++....+.+ +++..++.||++|||+|++..|.+.++++.+   +++.+..|+.+.+.+..+.|   +...+|.++++
T Consensus        41 l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~---~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~  117 (166)
T d1z6na1          41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQ---PNIELAIISKGRAEDDLRQRLALERIAIPLVLVL  117 (166)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC---TTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred             ccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHC---CCCcEEEEECccCHHHHHHHHHhccccccceeec
Confidence            55555544443 5677899999999999999999999999887   45777788888888888888   45577888887


Q ss_pred             cCCCCCccccc
Q 018270          104 PKGSLEPKKYE  114 (358)
Q Consensus       104 ~~~~~~~~~~~  114 (358)
                      .........+.
T Consensus       118 d~~~~~~~~~~  128 (166)
T d1z6na1         118 DEEFNLLGRFV  128 (166)
T ss_dssp             CTTCCEEEEEE
T ss_pred             Cccchhccccc
Confidence            66654433443

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.47  E-value=6.5e-07  Score=67.33  Aligned_cols=109  Identities=9%  Similarity=0.143  Sum_probs=89.3

Q ss_pred             CCeEEcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCc--cCCCeE
Q 018270           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGV--QGYPTI  100 (358)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i--~~~P~l  100 (358)
                      .-+.++|.+|+......+.+.++.|+... .....+...+.++|++++  +.+.|+.+|.++.....+.||+  ..+|.+
T Consensus         6 PLv~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~--~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~   82 (133)
T d2djka1           6 PLIGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQR--GVINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CCSEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSST--TTSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             CceeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhc--CceEEEEEeHHHhHHHHHHhcCCcccCCcE
Confidence            45789999999999988899888888765 467889999999999998  6799999999988888899998  578999


Q ss_pred             EEccCCCCCcccc--cCCCCHHHHHHHHhccCCCCc
Q 018270          101 QWFPKGSLEPKKY--EGPRSTEALAEYVNNEGGTNV  134 (358)
Q Consensus       101 ~~~~~~~~~~~~~--~g~~~~~~i~~~i~~~~~~~~  134 (358)
                      +++...+.....|  .+..+.++|.+|+++....+.
T Consensus        83 ~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl  118 (133)
T d2djka1          83 AIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             EEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             EEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCC
Confidence            9987655443444  467899999999998654443

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.31  E-value=1.5e-06  Score=67.44  Aligned_cols=97  Identities=14%  Similarity=0.260  Sum_probs=67.1

Q ss_pred             HHHHhcCCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------cHHHHH
Q 018270          152 DEIVLDKSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAE  209 (358)
Q Consensus       152 ~~~~~~~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------~~~l~~  209 (358)
                      .++. .+++++++.|| +.||++|....+.+.++.+.+... .+.++.+..+.                     +..+++
T Consensus        24 sd~~-~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  101 (160)
T d2cx4a1          24 YEVL-KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIK  101 (160)
T ss_dssp             HHHH-TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT-CCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHH
T ss_pred             HHHh-hCCCEEEEEecccccCCchhhhhhhhhccccccccc-ccccccccccchhhhhhhcccceeeEEEeecCCcchHH
Confidence            3443 46788988888 899999999999999998888644 45555554432                     237888


Q ss_pred             hcCCC----------cccEEEEEeCCCcceeeec-----CCCCHHHHHHHHHHhcC
Q 018270          210 KYGVS----------GFPTLKFFPKGNKDGEEYG-----GGRDLEDFVSFINEKCG  250 (358)
Q Consensus       210 ~~~v~----------~~Pti~~~~~g~~~~~~~~-----g~~~~~~l~~~i~~~~~  250 (358)
                      .||+.          ..|+.+++..+++....+.     +..+.+++++-+++..+
T Consensus       102 ~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         102 LYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             HTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             HcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence            88873          3688888877666444432     23467777777766554

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.30  E-value=2.5e-06  Score=63.98  Aligned_cols=107  Identities=11%  Similarity=0.185  Sum_probs=85.6

Q ss_pred             CceEcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCC--cccEE
Q 018270          142 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFPTL  219 (358)
Q Consensus       142 ~v~~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~--~~Pti  219 (358)
                      -+.++|.+|+.... +.+.+.++.|+.+- .....+...+.++|+.++  +++.|+.+|.+++....+.||+.  .+|.+
T Consensus         7 Lv~e~~~~n~~~~~-~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~--~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~   82 (133)
T d2djka1           7 LIGEIGPETYSDYM-SAGIPLAYIFAETA-EERKELSDKLKPIAEAQR--GVINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CSEECCHHHHHHHH-HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSST--TTSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             ceeccChhhHHHHh-cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhc--CceEEEEEeHHHhHHHHHHhcCCcccCCcE
Confidence            47789999999988 67788888888654 345778889999999996  57999999999888888999985  58999


Q ss_pred             EEEeCCCcceeee--cCCCCHHHHHHHHHHhcCCC
Q 018270          220 KFFPKGNKDGEEY--GGGRDLEDFVSFINEKCGTS  252 (358)
Q Consensus       220 ~~~~~g~~~~~~~--~g~~~~~~l~~~i~~~~~~~  252 (358)
                      +++...+.....|  .+..+.+.+.+|+++.....
T Consensus        83 ~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gk  117 (133)
T d2djka1          83 AIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             EEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCceecCCccccCCHHHHHHHHHHHHcCC
Confidence            9987554444444  45689999999999976543

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.22  E-value=1.7e-06  Score=67.09  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=67.5

Q ss_pred             HHHHhcCCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------cchhhHh
Q 018270           33 FEKEVGQDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------EHKSLCS   90 (358)
Q Consensus        33 f~~~~~~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------~~~~l~~   90 (358)
                      +.+...++++++|.|| +.||++|....+.+.+..+.++..+ +.++.+..+                     .+.++++
T Consensus        23 Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  101 (160)
T d2cx4a1          23 LYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN-AEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIK  101 (160)
T ss_dssp             HHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC-CEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHH
T ss_pred             hHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc-cccccccccchhhhhhhcccceeeEEEeecCCcchHH
Confidence            3455567899999999 8999999999999999988887543 445555432                     2345677


Q ss_pred             hcCcc----------CCCeEEEccCCCCCccccc-----CCCCHHHHHHHHhccCC
Q 018270           91 KYGVQ----------GYPTIQWFPKGSLEPKKYE-----GPRSTEALAEYVNNEGG  131 (358)
Q Consensus        91 ~~~i~----------~~P~l~~~~~~~~~~~~~~-----g~~~~~~i~~~i~~~~~  131 (358)
                      .||+.          ..|+++++++++.....+.     +..+.+++.+-+++..+
T Consensus       102 ~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         102 LYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             HTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             HcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence            78773          4688888887775533322     33467777777765443

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=4.9e-06  Score=61.48  Aligned_cols=105  Identities=10%  Similarity=0.058  Sum_probs=83.9

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCcc-CCCeEEEccC
Q 018270           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ-GYPTIQWFPK  105 (358)
Q Consensus        27 ~l~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-~~P~l~~~~~  105 (358)
                      +++.+++...+..+.|+++.|+.+. ..-..+.+.+.++|++++  +.+.|+.+|.++.....+.||+. ..|.+++...
T Consensus         4 ei~~~~~~~y~~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fk--gki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~   80 (125)
T d2b5ea3           4 EIDGSVFAQYVESGLPLGYLFYNDE-EELEEYKPLFTELAKKNR--GLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDM   80 (125)
T ss_dssp             BCCHHHHHHHHHTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTT--TTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEET
T ss_pred             ccCHHHHHHHHhcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhc--CeeEEEEEchHHhHHHHHHcCCCccCCcEEEEec
Confidence            5789999999988999999999875 356789999999999998  66999999999888888999986 4899988765


Q ss_pred             CCCCcccc-------------cCCCCHHHHHHHHhccCCCCc
Q 018270          106 GSLEPKKY-------------EGPRSTEALAEYVNNEGGTNV  134 (358)
Q Consensus       106 ~~~~~~~~-------------~g~~~~~~i~~~i~~~~~~~~  134 (358)
                      ........             .+..+.++|.+|+++....+.
T Consensus        81 ~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKl  122 (125)
T d2b5ea3          81 TEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDA  122 (125)
T ss_dssp             TTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCC
T ss_pred             ccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCc
Confidence            43221211             367899999999988655443

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=7.4e-06  Score=64.06  Aligned_cols=89  Identities=17%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc-------------------------cHHHHHhc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~  211 (358)
                      .++.+++.|| +.||++|....+.+.+....|+.. ++.++.|..+.                         +..+++.|
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~-g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~y  121 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  121 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             CCCeEEEEEecCCCCcccccccccccccccccccc-CcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHc
Confidence            5778888888 999999999999999999999743 45555555442                         23688899


Q ss_pred             CC-----CcccEEEEEeCCCcceeee--cC--CCCHHHHHHHHHH
Q 018270          212 GV-----SGFPTLKFFPKGNKDGEEY--GG--GRDLEDFVSFINE  247 (358)
Q Consensus       212 ~v-----~~~Pti~~~~~g~~~~~~~--~g--~~~~~~l~~~i~~  247 (358)
                      ||     ...|+.+++.+.+.....+  ..  .++.+++.+.|..
T Consensus       122 gv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         122 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            98     5678888887665533222  21  3567777777653

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=7.7e-06  Score=60.40  Aligned_cols=102  Identities=13%  Similarity=0.130  Sum_probs=80.8

Q ss_pred             EcCcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCc-ccEEEEEe
Q 018270          145 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG-FPTLKFFP  223 (358)
Q Consensus       145 ~l~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pti~~~~  223 (358)
                      +++.+|+.+.. ..+.|.++.|+.+-- .-....+.+.++|+.|+  +++.|+.+|.++....++.||+.. .|.+++..
T Consensus         4 ei~~~~~~~y~-~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fk--gki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~   79 (125)
T d2b5ea3           4 EIDGSVFAQYV-ESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNR--GLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHD   79 (125)
T ss_dssp             BCCHHHHHHHH-HTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTT--TTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEE
T ss_pred             ccCHHHHHHHH-hcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhc--CeeEEEEEchHHhHHHHHHcCCCccCCcEEEEe
Confidence            47889999988 678899998988642 34567889999999996  569999999998888999999964 89999886


Q ss_pred             CCCcceeee-------------cCCCCHHHHHHHHHHhcC
Q 018270          224 KGNKDGEEY-------------GGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       224 ~g~~~~~~~-------------~g~~~~~~l~~~i~~~~~  250 (358)
                      ..+...+.+             .+..+.++|.+|+++.+.
T Consensus        80 ~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~  119 (125)
T d2b5ea3          80 MTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK  119 (125)
T ss_dssp             TTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             cccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence            443322222             367899999999998764

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.12  E-value=1e-05  Score=63.30  Aligned_cols=83  Identities=23%  Similarity=0.196  Sum_probs=62.6

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-----------------------------------
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-----------------------------------   84 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------------------   84 (358)
                      .+..+++|+...||||+++.+.+.++...+.....+.+.......                                   
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD  103 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence            344699999999999999999999999888765555555332211                                   


Q ss_pred             -------------------------------chhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhc
Q 018270           85 -------------------------------HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN  128 (358)
Q Consensus        85 -------------------------------~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~  128 (358)
                                                     ....++++||+++||+++  +|    ..+.|..+.+++.++|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng----~~~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GE----YIFDESVTEEELRGYIEK  172 (172)
T ss_dssp             HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TT----EEECTTCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CC----EEecCCCCHHHHHHHHcC
Confidence                                           012456689999999887  33    357899999999999874

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.5e-05  Score=57.40  Aligned_cols=97  Identities=16%  Similarity=0.255  Sum_probs=74.8

Q ss_pred             CcccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCC
Q 018270          147 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  226 (358)
Q Consensus       147 ~~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~  226 (358)
                      +....++++ +.+..++|.|+..   .-......|.++|+.+.   ++.|+.   ..+.++++.+|++. |+|++|++..
T Consensus         7 ~~~~~e~f~-~~~~v~VVGfF~~---~~~~~~~~F~~~A~~~~---d~~F~~---t~~~~v~~~~~v~~-~~Ivl~k~~d   75 (110)
T d1bjxa_           7 DGAAAESLV-ESSEVAVIGFFKD---VESDSAKQFLQAAEAID---DIPFGI---TSNSDVFSKYQLDK-DGVVLFKKFD   75 (110)
T ss_dssp             SHHHHHHHH-HHSSEEEEEECTT---TTSHHHHHHHHHHHHCS---SSCEEE---ECCSHHHHHTTCSS-CEEEEEESSS
T ss_pred             CHHHHHHHh-ccCCeEEEEEEcC---CCchHHHHHHHHHHhCc---CceEEE---ECCHHHHHHcCCCC-CeEEEeccCC
Confidence            446677777 6777888888865   33456778999999883   466666   33456889999975 9999999877


Q ss_pred             cceeeecCCCCHHHHHHHHHHhcCCCCC
Q 018270          227 KDGEEYGGGRDLEDFVSFINEKCGTSRD  254 (358)
Q Consensus       227 ~~~~~~~g~~~~~~l~~~i~~~~~~~~~  254 (358)
                      .....|.|..+.++|.+||..++-+...
T Consensus        76 e~~~~~~~~~~~~~l~~fi~~~~~PlV~  103 (110)
T d1bjxa_          76 EGRNNFEGEVTKENLLDFIKHNQLPLVI  103 (110)
T ss_dssp             SSBCCCCSCCCHHHHHHHHHHHSSCCCS
T ss_pred             ccccccCCCCCHHHHHHHHHHcCcCcEE
Confidence            6667788999999999999998765543

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.11  E-value=1.3e-05  Score=56.42  Aligned_cols=92  Identities=11%  Similarity=0.178  Sum_probs=72.1

Q ss_pred             cccHHHHHhcCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc
Q 018270          148 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  227 (358)
Q Consensus       148 ~~~f~~~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~  227 (358)
                      .+..+.++...+..++|-|+.+   .-......|.++|..++  +++.|+.   ..+.++++++|+. .|++++|++-..
T Consensus         7 ~~e~~~F~~~~d~v~VvGfF~~---~~~~~~~~F~~~A~~~r--d~~~F~~---t~d~~va~~~~v~-~~~vvlfr~fde   77 (102)
T d1a8ya2           7 ERELQAFENIEDEIKLIGYFKN---KDSEHYKAFKEAAEEFH--PYIPFFA---TFDSKVAKKLTLK-LNEIDFYEAFME   77 (102)
T ss_dssp             HHHHHHHTTCCSSCEEEEECSS---TTCHHHHHHHHHHHHHT--TTSCEEE---ECCHHHHHHHCCC-TTCEEEECTTCS
T ss_pred             HHHHHHHhccCCCEEEEEEECC---CCcHHHHHHHHHHHHcC--CCceEEE---ECCHHHHHHcCCC-CCCEEEeeecCC
Confidence            4556677633556788888865   23446778999999885  5677777   5678899999995 899999998777


Q ss_pred             ceeeecCC-CCHHHHHHHHHHh
Q 018270          228 DGEEYGGG-RDLEDFVSFINEK  248 (358)
Q Consensus       228 ~~~~~~g~-~~~~~l~~~i~~~  248 (358)
                      ....|.|. .+.++|.+||.++
T Consensus        78 ~~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          78 EPVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             SEEECSSSSCCHHHHHHHHHHT
T ss_pred             CceecCCCCCCHHHHHHHHHHh
Confidence            77889885 8999999999875

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=4e-06  Score=64.67  Aligned_cols=84  Identities=23%  Similarity=0.317  Sum_probs=61.4

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEe------------------------------------
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD------------------------------------  200 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd------------------------------------  200 (358)
                      .+.+.+++.|+.+-||+|++++|.+.++.+..   ..+.+...-                                    
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~---~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHEQMADYNALG---ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  100 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHHTT---EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHHhhccC---ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccch
Confidence            34678899999999999999999999886532   223333221                                    


Q ss_pred             ------CcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHHh
Q 018270          201 ------ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  248 (358)
Q Consensus       201 ------~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~  248 (358)
                            ...+..+++++||+|.||++ +.+|    ..+.|..+.+.|.++|.+.
T Consensus       101 ~~~~~~i~~~~~la~~lgv~GTPt~~-~~nG----~~v~G~~~~e~l~~~i~~~  149 (156)
T d1eeja1         101 ASCDVDIADHYALGVQLGVSGTPAVV-LSNG----TLVPGYQPPKEMKEFLDEH  149 (156)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEEE-CTTS----CEEESCCCHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHcCCcCCCEEE-EeCC----eEecCCCCHHHHHHHHHHH
Confidence                  11234789999999999964 4455    2457999999999999874

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.05  E-value=8.3e-06  Score=63.80  Aligned_cols=82  Identities=18%  Similarity=0.165  Sum_probs=63.4

Q ss_pred             CCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH---------------------------------
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---------------------------------  205 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---------------------------------  205 (358)
                      .+..++.|+...||+|+.+.|.+.++.+.+.....+.+.........                                 
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD  103 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence            35569999999999999999999999888876666666554432110                                 


Q ss_pred             ---------------------------------HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHH
Q 018270          206 ---------------------------------DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  246 (358)
Q Consensus       206 ---------------------------------~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~  246 (358)
                                                       ..++++||++.||+++  +|    ..+.|..+.+++.++|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng----~~~~g~~~~~~~~~~id  171 (172)
T d1z6ma1         104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GE----YIFDESVTEEELRGYIE  171 (172)
T ss_dssp             HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TT----EEECTTCCHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CC----EEecCCCCHHHHHHHHc
Confidence                                             4566799999999876  45    35789999999999885

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=5e-06  Score=65.09  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=63.0

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-------------------------cchhhHhhc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-------------------------EHKSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~~   92 (358)
                      .+++++|.|| +.|||+|....+.|.+..++++..+ +.++.|..+                         .+.++++.|
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g-~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~y  121 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD-AQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  121 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT-EEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccC-cceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHc
Confidence            4688899998 9999999999999999999998543 555555543                         234577888


Q ss_pred             Cc-----cCCCeEEEccCCCCCcccc--c--CCCCHHHHHHHHhc
Q 018270           93 GV-----QGYPTIQWFPKGSLEPKKY--E--GPRSTEALAEYVNN  128 (358)
Q Consensus        93 ~i-----~~~P~l~~~~~~~~~~~~~--~--g~~~~~~i~~~i~~  128 (358)
                      |+     ...|+.++.++++.....+  .  -.+..+++.+.|+.
T Consensus       122 gv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         122 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            87     5667888887766442221  1  23567777777654

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=3.4e-06  Score=65.09  Aligned_cols=84  Identities=21%  Similarity=0.366  Sum_probs=61.0

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEE-------------------------------------
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKV-------------------------------------   80 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~v-------------------------------------   80 (358)
                      .+.+.+++.|+-+.||+|+.+.|.+.++.+..   ..+.+...                                     
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~---~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHEQMADYNALG---ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  100 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHHTT---EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHHhhccC---ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccch
Confidence            35677999999999999999999999886532   12222211                                     


Q ss_pred             -e----CccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           81 -D----CDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        81 -d----~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                       .    ...+..+++.+||+++|++++ .+|    ..+.|..+.+.|.++|++.
T Consensus       101 ~~~~~~i~~~~~la~~lgv~GTPt~~~-~nG----~~v~G~~~~e~l~~~i~~~  149 (156)
T d1eeja1         101 ASCDVDIADHYALGVQLGVSGTPAVVL-SNG----TLVPGYQPPKEMKEFLDEH  149 (156)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEEEC-TTS----CEEESCCCHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHcCCcCCCEEEE-eCC----eEecCCCCHHHHHHHHHHH
Confidence             0    112346789999999999764 344    2467999999999999874

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.99  E-value=1.8e-05  Score=61.64  Aligned_cols=88  Identities=22%  Similarity=0.318  Sum_probs=61.4

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .++++++.|| +.||++|....+.+.++...|.. ..+.++.|..+.                            +..++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~-~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~  110 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAE-INTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIA  110 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhc-CceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHH
Confidence            5778999998 99999999999999999999974 356666665542                            12577


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHH
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFIN  246 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~  246 (358)
                      +.|++.      .+|+.+++...+.....+.+    .++.+++++.|.
T Consensus       111 ~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~  158 (167)
T d1e2ya_         111 RAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVE  158 (167)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence            888872      36777777766654333222    345666666654

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.98  E-value=1.4e-05  Score=57.98  Aligned_cols=87  Identities=17%  Similarity=0.256  Sum_probs=66.1

Q ss_pred             CCcEEEEEEC--CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC--ccchhhHhhcCccCCCeEEEccCCCCCcccccC
Q 018270           40 DRGALVEFYA--PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC--DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG  115 (358)
Q Consensus        40 ~~~~lv~fya--~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~--~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g  115 (358)
                      .+||-+.+|.  +.|+.|..+...+.++++.-   +++.+...+.  .++++++++|+|...|++.++.+|....++|.|
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS---dki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~G   97 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELT---DKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFG   97 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC---TTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEES
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhhC---CCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEe
Confidence            4566555554  57999999999999998753   4566655554  456889999999999999999887666689988


Q ss_pred             CCCHHHHHHHHhcc
Q 018270          116 PRSTEALAEYVNNE  129 (358)
Q Consensus       116 ~~~~~~i~~~i~~~  129 (358)
                      ...=.++..||...
T Consensus        98 iP~GhEf~SlilaI  111 (119)
T d1a8la1          98 LPAGHEFAAFLEDI  111 (119)
T ss_dssp             CCCTTHHHHHHHHH
T ss_pred             ccCchhHHHHHHHH
Confidence            77777777777653

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.97  E-value=2.5e-05  Score=56.51  Aligned_cols=89  Identities=21%  Similarity=0.357  Sum_probs=68.5

Q ss_pred             CCCcEEE-EEcC-CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--ccHHHHHhcCCCcccEEEEEeCCCcceeeec
Q 018270          158 KSKDVLV-EFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG  233 (358)
Q Consensus       158 ~~~~v~v-~f~a-~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~  233 (358)
                      -.++|-+ .|.. ..|+.|.++...+++++..-   +.+.+...+.+  ++.+++++|+|+..|++.++.+|....++|.
T Consensus        20 l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS---dki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~   96 (119)
T d1a8la1          20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSELT---DKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYF   96 (119)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC---TTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEE
T ss_pred             CCCCEEEEEEecCCCchhHHHHHHHHHHHHhhC---CCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEE
Confidence            3466644 4443 46999999999999998753   45666555544  5678999999999999999998766678999


Q ss_pred             CCCCHHHHHHHHHHhc
Q 018270          234 GGRDLEDFVSFINEKC  249 (358)
Q Consensus       234 g~~~~~~l~~~i~~~~  249 (358)
                      |-..-.++..||....
T Consensus        97 GiP~GhEf~SlilaIl  112 (119)
T d1a8la1          97 GLPAGHEFAAFLEDIV  112 (119)
T ss_dssp             SCCCTTHHHHHHHHHH
T ss_pred             eccCchhHHHHHHHHH
Confidence            9888888888886543

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.95  E-value=6.6e-06  Score=62.94  Aligned_cols=82  Identities=23%  Similarity=0.310  Sum_probs=61.3

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc-----------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------------  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------------------  202 (358)
                      +.+.+++.|+.+-||+|+++++.+..+.+..   ..+.+......                                   
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~  101 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLG---ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  101 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTT---EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccC---ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccch
Confidence            4567899999999999999999999887632   23433332111                                   


Q ss_pred             -------ccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHHHH
Q 018270          203 -------KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  247 (358)
Q Consensus       203 -------~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~  247 (358)
                             .+..+++++||+|.||+++ .+|    ....|..+.+.|.+.|.+
T Consensus       102 ~~~~~i~~~~~la~~lGv~GTPt~~~-~nG----~~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         102 KTPNIVKKHYELGIQFGVRGTPSIVT-STG----ELIGGYLKPADLLRALEE  148 (150)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTS----CCCCSCCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHhcCcCCCCEEEE-cCC----cEecCCCCHHHHHHHHHh
Confidence                   1337899999999999765 344    356899999999999875

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.93  E-value=2e-05  Score=61.26  Aligned_cols=87  Identities=17%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             CCCcEEEEEcCC-CCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-------------------------HHHHHhc
Q 018270          158 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------------KDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~a~-~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~  211 (358)
                      .++.+++.||.. ||++|....+.+.++...|.. .++.++.|..+..                         .+++++|
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~-~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~y  108 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK-LGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH-TTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcc-cceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHh
Confidence            567899999965 999999999999999999964 3566666665531                         2678888


Q ss_pred             CCC------cccEEEEEeCCCcceeeecC----CCCHHHHHHHH
Q 018270          212 GVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFI  245 (358)
Q Consensus       212 ~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i  245 (358)
                      |+.      ..|+.+++.+.+.....+.+    .++.+++.+-|
T Consensus       109 gv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~l  152 (166)
T d1we0a1         109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKV  152 (166)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHH
T ss_pred             CCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHH
Confidence            874      35667777766653332222    13455555444

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=1.8e-05  Score=61.71  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=60.8

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc------------------------------------
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD------------------------------------   83 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~------------------------------------   83 (358)
                      .+.+++.|+-+.||+|+++.+.+.++.+..    .+.+..++..                                    
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~  111 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDSG----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  111 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHTT----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhcc----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccc
Confidence            345788999999999999999998887643    3554433321                                    


Q ss_pred             --------------cchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHh
Q 018270           84 --------------EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN  127 (358)
Q Consensus        84 --------------~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~  127 (358)
                                    .+..+++++||.++|++++.+.++ .+..+.|..+.+.+.+.+.
T Consensus       112 ~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g-~~~~~~G~~~~~~l~~il~  168 (169)
T d1v58a1         112 VPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKEN-TLQQAVGLPDQKTLNIIMG  168 (169)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTT-EEEEEESSCCHHHHHHHTT
T ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhc
Confidence                          122467789999999998877665 3467889889888877653

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=1.5e-05  Score=61.33  Aligned_cols=49  Identities=12%  Similarity=0.112  Sum_probs=36.2

Q ss_pred             HHHHhcCCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           33 FEKEVGQDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        33 f~~~~~~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      +.+...+++.+++.|| +.||++|....+.|.+...+++.  .+.++.|..+
T Consensus        26 l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~--~~~~~~is~d   75 (156)
T d2a4va1          26 LKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE--YAAVFGLSAD   75 (156)
T ss_dssp             HHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT--TCEEEEEESC
T ss_pred             eHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh--ccceeeeccc
Confidence            3444556677777777 89999999999999999999974  3444555553

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.90  E-value=1.1e-05  Score=61.64  Aligned_cols=84  Identities=18%  Similarity=0.233  Sum_probs=61.5

Q ss_pred             cCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeC-----------------------------------
Q 018270           38 GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC-----------------------------------   82 (358)
Q Consensus        38 ~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~-----------------------------------   82 (358)
                      .+.+.+++.|+-+.||+|+++.+.+..+.+..   ..+.+.....                                   
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~  100 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDLG---ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  100 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHTT---EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CCCCEEEEEEECCCCHHHHHHhHHHHHHhccC---ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccc
Confidence            34566899999999999999999999887642   2333332111                                   


Q ss_pred             -------ccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHHHhcc
Q 018270           83 -------DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE  129 (358)
Q Consensus        83 -------~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  129 (358)
                             ..+..+++++||+++|++++- +|    ....|..+.++|.++|++.
T Consensus       101 ~~~~~~i~~~~~la~~lGv~GTPt~~~~-nG----~~i~G~~~~~~l~~~l~~~  149 (150)
T d1t3ba1         101 VKTPNIVKKHYELGIQFGVRGTPSIVTS-TG----ELIGGYLKPADLLRALEET  149 (150)
T ss_dssp             CCCSSHHHHHHHHHHHHTCCSSCEEECT-TS----CCCCSCCCHHHHHHHHHHC
T ss_pred             hhhhhHHHHHHHHHHhcCcCCCCEEEEc-CC----cEecCCCCHHHHHHHHHhh
Confidence                   123457899999999998863 33    2568999999999998753

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.9e-05  Score=54.54  Aligned_cols=96  Identities=17%  Similarity=0.250  Sum_probs=75.6

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCC
Q 018270           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL  108 (358)
Q Consensus        29 ~~~~f~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~  108 (358)
                      +.+.+++++..+..++|-|+.+-   -......|.++|+.++   ++.|+.+.   +.++++.+++.. |++++|++...
T Consensus         7 ~~~~~e~f~~~~~v~VVGfF~~~---~~~~~~~F~~~A~~~~---d~~F~~t~---~~~v~~~~~v~~-~~Ivl~k~~de   76 (110)
T d1bjxa_           7 DGAAAESLVESSEVAVIGFFKDV---ESDSAKQFLQAAEAID---DIPFGITS---NSDVFSKYQLDK-DGVVLFKKFDE   76 (110)
T ss_dssp             SHHHHHHHHHHSSEEEEEECTTT---TSHHHHHHHHHHHHCS---SSCEEEEC---CSHHHHHTTCSS-CEEEEEESSSS
T ss_pred             CHHHHHHHhccCCeEEEEEEcCC---CchHHHHHHHHHHhCc---CceEEEEC---CHHHHHHcCCCC-CeEEEeccCCc
Confidence            45678888888899999998764   3356678899998874   46777665   456889999976 99999998766


Q ss_pred             CcccccCCCCHHHHHHHHhccCCCCc
Q 018270          109 EPKKYEGPRSTEALAEYVNNEGGTNV  134 (358)
Q Consensus       109 ~~~~~~g~~~~~~i~~~i~~~~~~~~  134 (358)
                      ....|.|..+.++|.+||....-+.+
T Consensus        77 ~~~~~~~~~~~~~l~~fi~~~~~PlV  102 (110)
T d1bjxa_          77 GRNNFEGEVTKENLLDFIKHNQLPLV  102 (110)
T ss_dssp             SBCCCCSCCCHHHHHHHHHHHSSCCC
T ss_pred             cccccCCCCCHHHHHHHHHHcCcCcE
Confidence            66778899999999999998765543

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=6.5e-05  Score=57.59  Aligned_cols=49  Identities=16%  Similarity=0.178  Sum_probs=35.0

Q ss_pred             HHHHHhcCCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          151 FDEIVLDKSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       151 f~~~~~~~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      +.++. .+++.+++.|| +.||++|....+.+.+...+|+.  .+.++.|..+
T Consensus        26 l~~~~-~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~--~~~~~~is~d   75 (156)
T d2a4va1          26 LKKIT-ENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE--YAAVFGLSAD   75 (156)
T ss_dssp             HHHHH-HHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT--TCEEEEEESC
T ss_pred             eHHHc-CCccEEEEEecccccCcchhhhhHHHHHHHHHHhh--ccceeeeccc
Confidence            34443 34566666667 78999999999999999999963  3444555554

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.82  E-value=5.2e-05  Score=59.46  Aligned_cols=40  Identities=18%  Similarity=0.463  Sum_probs=32.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEE
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIG   78 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~   78 (358)
                      .+++.+|+|....||||+.+.+.+..+.+.+.....+...
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~   56 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKN   56 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEE
Confidence            5678999999999999999999999999988644444444

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.82  E-value=3.7e-05  Score=60.33  Aligned_cols=89  Identities=15%  Similarity=0.313  Sum_probs=65.6

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH--------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK--------------------------------  205 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------------------------------  205 (358)
                      ++++.+|.|...-|++|+.+.+.+..+.+.+.....+....+.....+                                
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            457788999999999999999999999998865444544444332110                                


Q ss_pred             -----------------------------------------HHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHH
Q 018270          206 -----------------------------------------DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF  244 (358)
Q Consensus       206 -----------------------------------------~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~  244 (358)
                                                               ..++++||+++||+++  +| +..+...+..+.+.|.+-
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nG-k~~v~~~~~~~~~~l~~~  173 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NN-RYLVQGQSVKSLDEYFDL  173 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT-TEEECGGGCCSHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CC-EEeeCCCCCCCHHHHHHH
Confidence                                                     6778999999999887  45 344556677888888877


Q ss_pred             HHHhc
Q 018270          245 INEKC  249 (358)
Q Consensus       245 i~~~~  249 (358)
                      |+..+
T Consensus       174 i~~L~  178 (181)
T d1beda_         174 VNYLL  178 (181)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.82  E-value=1.4e-05  Score=62.31  Aligned_cols=89  Identities=16%  Similarity=0.255  Sum_probs=61.4

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .+++++|.|| +.||++|....+.|.+..+++... .+.++.|+.+.                            +..++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~-~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~  110 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI-NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIA  110 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcC-ceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHH
Confidence            4678999999 999999999999999999999864 45566665542                            23356


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~  128 (358)
                      +.|++.      ..|+.++.++.+.+...+    ...++.+++.+.|+.
T Consensus       111 ~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         111 RAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            667762      356777777766442222    123466777776654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.80  E-value=1.7e-05  Score=61.71  Aligned_cols=88  Identities=17%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             CCCcEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc-------------------------chhhHhhc
Q 018270           39 QDRGALVEFYAP-WCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------------HKSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fya~-~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (358)
                      .++.++|.||.. ||++|....+.|.+..+++... .+.++.|..+.                         +.++++.|
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~-g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~y  108 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc-ceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHh
Confidence            467899999965 9999999999999999999763 46666566543                         23456677


Q ss_pred             Ccc------CCCeEEEccCCCCCccccc----CCCCHHHHHHHHh
Q 018270           93 GVQ------GYPTIQWFPKGSLEPKKYE----GPRSTEALAEYVN  127 (358)
Q Consensus        93 ~i~------~~P~l~~~~~~~~~~~~~~----g~~~~~~i~~~i~  127 (358)
                      |+.      ..|+.++.++++.+...+.    -.++.+++.+.|+
T Consensus       109 gv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lk  153 (166)
T d1we0a1         109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVK  153 (166)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHH
T ss_pred             CCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHH
Confidence            764      3456677777664422221    1245566665554

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.75  E-value=0.00012  Score=51.29  Aligned_cols=93  Identities=12%  Similarity=0.182  Sum_probs=73.5

Q ss_pred             ChhhHHHHhc-CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCC
Q 018270           29 TEDNFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS  107 (358)
Q Consensus        29 ~~~~f~~~~~-~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~  107 (358)
                      +.++++.+++ ++..++|-|+.+.-+   .....|.++|+.+.  +++.|+.+.   +.++++++|+. .|++++|++-.
T Consensus         6 ~~~e~~~F~~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~r--d~~~F~~t~---d~~va~~~~v~-~~~vvlfr~fd   76 (102)
T d1a8ya2           6 GERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFH--PYIPFFATF---DSKVAKKLTLK-LNEIDFYEAFM   76 (102)
T ss_dssp             SHHHHHHHTTCCSSCEEEEECSSTTC---HHHHHHHHHHHHHT--TTSCEEEEC---CHHHHHHHCCC-TTCEEEECTTC
T ss_pred             CHHHHHHHhccCCCEEEEEEECCCCc---HHHHHHHHHHHHcC--CCceEEEEC---CHHHHHHcCCC-CCCEEEeeecC
Confidence            3466888886 567889999875432   36778889998886  568888776   68899999995 79999999876


Q ss_pred             CCcccccCC-CCHHHHHHHHhccC
Q 018270          108 LEPKKYEGP-RSTEALAEYVNNEG  130 (358)
Q Consensus       108 ~~~~~~~g~-~~~~~i~~~i~~~~  130 (358)
                      .....|.|. .+.++|.+||..+.
T Consensus        77 e~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          77 EEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             SSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             CCceecCCCCCCHHHHHHHHHHhc
Confidence            666889884 89999999998753

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=8.8e-05  Score=58.28  Aligned_cols=45  Identities=16%  Similarity=0.145  Sum_probs=38.8

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      -++++++|.++|+||++|.+..+.+++|.+.|+.+ .+.+..+-|.
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~-g~~Il~fP~n   66 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCN   66 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             cCCCEEEEEEecccCCcchhhhHHHHHhhhhhccc-ceeEEEeecc
Confidence            37899999999999999999999999999999743 5777777665

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=9.9e-05  Score=57.34  Aligned_cols=83  Identities=17%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------------
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------------  203 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------------  203 (358)
                      +.+.+++.|+.+-||+|+.+.+.++++.+..    ++.+..++..-                                  
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~  110 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSG----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  110 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTT----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhcc----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccc
Confidence            3456789999999999999999998887643    45555444320                                  


Q ss_pred             ----------------cHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHHHHH
Q 018270          204 ----------------YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  245 (358)
Q Consensus       204 ----------------~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i  245 (358)
                                      +..+++++||++.||+++...++ ......|..+.+.|.+-+
T Consensus       111 ~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g-~~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         111 NVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKEN-TLQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTT-EEEEEESSCCHHHHHHHT
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHh
Confidence                            01688899999999988877654 466688988888876654

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.70  E-value=5.2e-05  Score=60.29  Aligned_cols=89  Identities=13%  Similarity=0.161  Sum_probs=66.9

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc----------------------------cchhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD----------------------------EHKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~----------------------------~~~~l~   89 (358)
                      .++++++.|| ++||+.|....+.|.+..+++... .+.+..|..+                            .+.+++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~-g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~  110 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM  110 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccC-ceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHH
Confidence            3688999999 999999999999999999999753 5666666654                            234688


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~  128 (358)
                      +.||+-      ..|+.++.++.+.+...+    .-.+..+++.+.|+.
T Consensus       111 ~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         111 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            889883      467788888877553332    235688888888765

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.69  E-value=0.0001  Score=60.27  Aligned_cols=90  Identities=12%  Similarity=0.142  Sum_probs=68.0

Q ss_pred             cCCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc---------------------------cchhhH
Q 018270           38 GQDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------------EHKSLC   89 (358)
Q Consensus        38 ~~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------------~~~~l~   89 (358)
                      .+++.+++.|| ++||+.|....+.+.+..++|+.. .+.++.|.++                           .+.+++
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~va  105 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA  105 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC-CcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHH
Confidence            46788888998 999999999999999999999754 4666666543                           345688


Q ss_pred             hhcCc-------cCCCeEEEccCCCCCccc--c--cCCCCHHHHHHHHhc
Q 018270           90 SKYGV-------QGYPTIQWFPKGSLEPKK--Y--EGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i-------~~~P~l~~~~~~~~~~~~--~--~g~~~~~~i~~~i~~  128 (358)
                      +.||+       ...|++++.++++.+...  |  .-.++.+++.+.|+.
T Consensus       106 k~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1         106 RRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             HHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             HHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            89998       467899999887754221  2  235789999988865

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.67  E-value=0.00012  Score=59.92  Aligned_cols=91  Identities=13%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             cCCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc---------------------------cHHHH
Q 018270          157 DKSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLA  208 (358)
Q Consensus       157 ~~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------------~~~l~  208 (358)
                      .+++.+++.|| +.||+.|....+.+.++..+|+.. ++.++.+.++.                           +..++
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~va  105 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA  105 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC-CcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHH
Confidence            46777888888 999999999999999999999743 46666565442                           23789


Q ss_pred             HhcCC-------CcccEEEEEeCCCcceee--e--cCCCCHHHHHHHHHHh
Q 018270          209 EKYGV-------SGFPTLKFFPKGNKDGEE--Y--GGGRDLEDFVSFINEK  248 (358)
Q Consensus       209 ~~~~v-------~~~Pti~~~~~g~~~~~~--~--~g~~~~~~l~~~i~~~  248 (358)
                      +.||+       ...|+.+++.+.+.....  +  .-+++.++++..|...
T Consensus       106 k~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         106 RRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            99998       357999988777663322  2  2247899999988654

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.66  E-value=0.00011  Score=58.23  Aligned_cols=89  Identities=18%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .++.+++.|| +.||+.|....+.+.++...|.. .++.++.|..+.                            +.+++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~-~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~  110 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD-IGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM  110 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhcc-CceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHH
Confidence            4678999999 99999999999999999999974 456666666552                            23799


Q ss_pred             HhcCCC------cccEEEEEeCCCcceeee----cCCCCHHHHHHHHHH
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINE  247 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~  247 (358)
                      +.||+-      .+|+.++..+.+.....+    .-+++.+++...|+.
T Consensus       111 ~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         111 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            999983      367777777666643333    224788888888865

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.57  E-value=0.00013  Score=56.76  Aligned_cols=89  Identities=16%  Similarity=0.280  Sum_probs=61.0

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      +++++++.|| +.||+.|....+.+++....|... ++.++.|..+.                            ..+++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~  110 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC-CeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHH
Confidence            4467889999 899999999999999999998643 46666565542                            12678


Q ss_pred             HhcCCC-----cccEEEEEeCCCcceeee-c---CCCCHHHHHHHHHH
Q 018270          209 EKYGVS-----GFPTLKFFPKGNKDGEEY-G---GGRDLEDFVSFINE  247 (358)
Q Consensus       209 ~~~~v~-----~~Pti~~~~~g~~~~~~~-~---g~~~~~~l~~~i~~  247 (358)
                      +.||+.     ..|+.++..+++.....+ .   -.++.+++++.|+.
T Consensus       111 ~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~a  158 (170)
T d1zofa1         111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA  158 (170)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred             HHcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            888883     357777777766633222 1   13556666666543

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00011  Score=56.06  Aligned_cols=93  Identities=13%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             CCCcEEEEEcCCCCc-ccchhhhhHHHHHHHhcCC---CCeEEEEEeCcc---c-------------------------H
Q 018270          158 KSKDVLVEFYAPWCG-HCKNLAPTYEKVAAAFTLE---DDVVVANLDADK---Y-------------------------K  205 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~-~c~~~~~~~~~la~~~~~~---~~v~~~~vd~~~---~-------------------------~  205 (358)
                      .+++++|.|+.+||+ .|....+.+.++.+.+...   ..+.+..+..+.   .                         .
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            689999999999996 6888888888887765433   234433333321   0                         1


Q ss_pred             HHHHhcCCCcc---------------cEEEEEeCCCcceeeecCCCCHHHHHHHHHHhcC
Q 018270          206 DLAEKYGVSGF---------------PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  250 (358)
Q Consensus       206 ~l~~~~~v~~~---------------Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~  250 (358)
                      .+...|++...               |+++++.+.++....|.+..+++++.+-|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            45666665432               5778887777777778888899999888877654

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.54  E-value=0.00024  Score=54.39  Aligned_cols=88  Identities=19%  Similarity=0.257  Sum_probs=59.9

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .++++++.|| +.||+.|....+.+.+....|... +..++.|..+.                            ...++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~-~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  103 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS  103 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcC-CceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHH
Confidence            4678999999 899999999999999999988643 45555554432                            12678


Q ss_pred             HhcCCCc------ccEEEEEeCCCcceeeec----CCCCHHHHHHHHH
Q 018270          209 EKYGVSG------FPTLKFFPKGNKDGEEYG----GGRDLEDFVSFIN  246 (358)
Q Consensus       209 ~~~~v~~------~Pti~~~~~g~~~~~~~~----g~~~~~~l~~~i~  246 (358)
                      +.||+..      .|+.++..+.+.....+.    -+++.+++++.|+
T Consensus       104 ~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lk  151 (158)
T d1zyea1         104 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVK  151 (158)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            8888762      456666665555332222    2356777777765

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.53  E-value=0.00018  Score=47.23  Aligned_cols=72  Identities=17%  Similarity=0.230  Sum_probs=52.5

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHHHHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV  242 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~  242 (358)
                      +.+|..++|+.|.+....+.   +.    ..+.+-.+|+++++++.++|+.. +|.+. . +|+.   ....+.+.+.+.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~---~~----~~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~-~~~~---~l~w~fd~~~l~   68 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALA---QA----RAGAFFSVFIDDDAALESAYGLR-VPVLR-D-PMGR---ELDWPFDAPRLR   68 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHH---HT----TCCCEEEEECTTCHHHHHHHTTT-CSEEE-C-TTCC---EEESCCCHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH---hc----cCCcEEEEEccCCHHHHHHhCCe-eeEEE-E-CCee---EEcCccCHHHHH
Confidence            67899999999987654433   22    23668889999999999999986 89654 2 3322   233468999999


Q ss_pred             HHHHH
Q 018270          243 SFINE  247 (358)
Q Consensus       243 ~~i~~  247 (358)
                      +|+..
T Consensus        69 ~~L~~   73 (75)
T d1ttza_          69 AWLDA   73 (75)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99863

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=0.00025  Score=53.93  Aligned_cols=87  Identities=16%  Similarity=0.150  Sum_probs=54.2

Q ss_pred             CCcEEE-EEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-----------------------HHHHHhcCCC
Q 018270          159 SKDVLV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGVS  214 (358)
Q Consensus       159 ~~~v~v-~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v~  214 (358)
                      ++++++ .|++.||++|....+.+.++.+++.. .++.++.+..+..                       ..+++.||+.
T Consensus        29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~-~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~  107 (153)
T d1xvwa1          29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN-DDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF  107 (153)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS-SSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred             CCcEEEEecccccccchhhhhhhhhhhhhhhcc-cccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhh
Confidence            344544 45589999999999999999988863 4577777766532                       2577778763


Q ss_pred             ------cccEEEEEeCCCcceeeecC----CCCHHHHHHHHH
Q 018270          215 ------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFIN  246 (358)
Q Consensus       215 ------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~  246 (358)
                            ..|+.+++...+.....+.+    .++..++.+-|.
T Consensus       108 ~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~  149 (153)
T d1xvwa1         108 NEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALA  149 (153)
T ss_dssp             ETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             hhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHH
Confidence                  24566666655543322221    234555555443

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.45  E-value=0.00018  Score=55.12  Aligned_cols=89  Identities=16%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .++++++.|| +.||+.|....+.+.+..+++... .+.+..|..+.                            ..+++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~-~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  103 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS  103 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcC-CceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHH
Confidence            3678999999 899999999999999999988754 35555554432                            23466


Q ss_pred             hhcCccC------CCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270           90 SKYGVQG------YPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~~------~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~  128 (358)
                      +.||+..      .|+.++.++.+.+...+    .-.++.+++.+.|..
T Consensus       104 ~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1         104 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            7777652      34567777666442222    124567777777763

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.40  E-value=0.00012  Score=56.87  Aligned_cols=89  Identities=16%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      +.+++++.|| +.|||.|....+.|.+....+++. .+.++.|..+.                            +.+++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~  110 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC-CeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHH
Confidence            3467889999 999999999999999999998764 45566565542                            23566


Q ss_pred             hhcCcc-----CCCeEEEccCCCCCcccc-c---CCCCHHHHHHHHhc
Q 018270           90 SKYGVQ-----GYPTIQWFPKGSLEPKKY-E---GPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~-----~~P~l~~~~~~~~~~~~~-~---g~~~~~~i~~~i~~  128 (358)
                      +.||+.     ..|+.++.++++.....+ .   -.++.+++.+.|+.
T Consensus       111 ~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~a  158 (170)
T d1zofa1         111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA  158 (170)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred             HHcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            777763     456777777766442211 1   23567777766654

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.40  E-value=0.00039  Score=45.55  Aligned_cols=73  Identities=18%  Similarity=0.360  Sum_probs=55.8

Q ss_pred             EEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCC-CCHHHHH
Q 018270           45 VEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEALA  123 (358)
Q Consensus        45 v~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~-~~~~~i~  123 (358)
                      |..+.+.|+.|.++....+++++++.  -+..+.++  ++-.++. +|||-++|.+++  +|.   ..+.|. .+.+++.
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~g--i~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~---vv~~G~vPs~~ei~   73 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELG--IDAEFEKI--KEMDQIL-EAGLTALPGLAV--DGE---LKIMGRVASKEEIK   73 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTT--CCEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTE---EEECSSCCCHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcC--CceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCE---EEEEecCCCHHHHH
Confidence            55678999999999999999998875  34555555  3456665 699999999987  442   567774 5899999


Q ss_pred             HHHh
Q 018270          124 EYVN  127 (358)
Q Consensus       124 ~~i~  127 (358)
                      +||.
T Consensus        74 ~~L~   77 (77)
T d1iloa_          74 KILS   77 (77)
T ss_dssp             HHCC
T ss_pred             HHhC
Confidence            9873

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00018  Score=56.46  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=37.6

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      +++++||.++|+||++|.+..+.++++.++|++.+ +.+..+-|.
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g-~~Il~fP~n   66 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG-LVVLGFPCN   66 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc-eeEEEeecc
Confidence            68999999999999999999999999999998644 666666664

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=0.00018  Score=54.71  Aligned_cols=44  Identities=11%  Similarity=0.200  Sum_probs=32.1

Q ss_pred             CCCcEEEEE-ECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEF-YAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~f-ya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      +.+++++.| ++.|||+|....+.+.+..+++.. ..+.+..+..+
T Consensus        28 g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~-~~~~vi~vs~d   72 (153)
T d1xvwa1          28 GAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN-DDSAALAISVG   72 (153)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS-SSEEEEEEESC
T ss_pred             CCCcEEEEecccccccchhhhhhhhhhhhhhhcc-cccccccccch
Confidence            335555554 489999999999999999888864 34666666554

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00053  Score=52.73  Aligned_cols=42  Identities=19%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .++++++.|| +.||++|....|.+.+++.++.   ++.++.|..+
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d   85 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID---NTVVLCISAD   85 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST---TEEEEEEESS
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhc---cceeeeEEcC
Confidence            5678888887 6799999999999999988763   4555555443

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.32  E-value=0.00067  Score=44.42  Aligned_cols=72  Identities=17%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA  123 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~  123 (358)
                      +..|..++|+.|.+....+.+   .    ..+.+-.+|.++++++..+|+.. +|.+.+  +++.   ...-..+.+++.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~----~~~~~~~vdI~~d~~l~~~y~~~-IPVl~~--~~~~---~l~w~fd~~~l~   68 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---A----RAGAFFSVFIDDDAALESAYGLR-VPVLRD--PMGR---ELDWPFDAPRLR   68 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---T----TCCCEEEEECTTCHHHHHHHTTT-CSEEEC--TTCC---EEESCCCHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh---c----cCCcEEEEEccCCHHHHHHhCCe-eeEEEE--CCee---EEcCccCHHHHH
Confidence            567899999999877655432   1    23668889999999999999966 897753  3332   222357999999


Q ss_pred             HHHhc
Q 018270          124 EYVNN  128 (358)
Q Consensus       124 ~~i~~  128 (358)
                      +|++.
T Consensus        69 ~~L~~   73 (75)
T d1ttza_          69 AWLDA   73 (75)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99975

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00053  Score=52.11  Aligned_cols=92  Identities=9%  Similarity=0.057  Sum_probs=63.4

Q ss_pred             CCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhhcCC---ceEEEEEeCccc----------------------------h
Q 018270           39 QDRGALVEFYAPWCG-HCKKLAPEYEKLGASFKKAK---SVLIGKVDCDEH----------------------------K   86 (358)
Q Consensus        39 ~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~~~~---~v~~~~vd~~~~----------------------------~   86 (358)
                      .++++||.|+.+||+ .|....+.+.++.+.+....   .+.+..+..+..                            .
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            579999999999997 79999999998888765432   344443333211                            0


Q ss_pred             hhHhhcCc---------------cCCCeEEEccCCCCCcccccCCCCHHHHHHHHhccC
Q 018270           87 SLCSKYGV---------------QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG  130 (358)
Q Consensus        87 ~l~~~~~i---------------~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~  130 (358)
                      .+...|++               .+.|+++++++.+.....|.+..+.+++.+-|.+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~l  157 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM  157 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            13344443               334678888888877677878888888888776653

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.28  E-value=0.00074  Score=52.30  Aligned_cols=45  Identities=20%  Similarity=0.348  Sum_probs=35.6

Q ss_pred             CCCcEEEEEcCCCCc-ccchhhhhHHHHHHHhcCC-CCeEEEEEeCc
Q 018270          158 KSKDVLVEFYAPWCG-HCKNLAPTYEKVAAAFTLE-DDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~-~c~~~~~~~~~la~~~~~~-~~v~~~~vd~~  202 (358)
                      .+++++|.|+.+||+ .|....+.+.++.+.+... .++.++.|..|
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            678999999999997 7999999999988887532 35666666543

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00026  Score=54.57  Aligned_cols=42  Identities=10%  Similarity=0.318  Sum_probs=32.6

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .++++++.|| +.||++|....+.|.+...++.   ++.++.|..+
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d   85 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID---NTVVLCISAD   85 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST---TEEEEEEESS
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhc---cceeeeEEcC
Confidence            4678888888 7799999999999999888764   4566655554

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.14  E-value=0.00072  Score=52.99  Aligned_cols=89  Identities=12%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-------------------------cchhhHhhc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-------------------------EHKSLCSKY   92 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~~   92 (358)
                      .++.++++|| +.||+.|....+.|.+..+++... .+.+..|..+                         .+.++++.|
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~-~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~y  107 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc-cEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHh
Confidence            4678999999 888999999999999999998753 4555555543                         233567778


Q ss_pred             Ccc------CCCeEEEccCCCCCccc--c--cCCCCHHHHHHHHhc
Q 018270           93 GVQ------GYPTIQWFPKGSLEPKK--Y--EGPRSTEALAEYVNN  128 (358)
Q Consensus        93 ~i~------~~P~l~~~~~~~~~~~~--~--~g~~~~~~i~~~i~~  128 (358)
                      |+.      ..|+.++.++++.....  +  .-.++.+++.+.++.
T Consensus       108 Gv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lka  153 (186)
T d1n8ja_         108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA  153 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             CCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHH
Confidence            774      34667777776644222  1  235788888887765

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.10  E-value=0.0013  Score=51.39  Aligned_cols=90  Identities=13%  Similarity=0.031  Sum_probs=63.1

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-------------------------HHHHHhc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------------KDLAEKY  211 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~  211 (358)
                      .++.+++.|| +.||+.|....+.|++....|... ++.+..|..|..                         ..++++|
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~-~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~y  107 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc-cEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHh
Confidence            4678999999 788999999999999999999643 555555555531                         2688888


Q ss_pred             CCC------cccEEEEEeCCCcceee--ec--CCCCHHHHHHHHHHh
Q 018270          212 GVS------GFPTLKFFPKGNKDGEE--YG--GGRDLEDFVSFINEK  248 (358)
Q Consensus       212 ~v~------~~Pti~~~~~g~~~~~~--~~--g~~~~~~l~~~i~~~  248 (358)
                      |+-      ..|+.++..+.+.....  +.  -.++.+++.+.|+..
T Consensus       108 Gv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaL  154 (186)
T d1n8ja_         108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHH
Confidence            883      25667777666553222  22  247888888877653

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.09  E-value=0.001  Score=51.43  Aligned_cols=89  Identities=20%  Similarity=0.309  Sum_probs=61.4

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      +++++++.|| +.||+.|......|.+.+..|.. .++.++.|..+.                            ...++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~-~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  104 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE-RNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  104 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCccchhhHHHhhhhhhhhc-CCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHH
Confidence            4578889998 89999999999999999999964 357777776652                            13677


Q ss_pred             HhcCCC-----cccEEEEEeCCCcceeeecC----CCCHHHHHHHHHH
Q 018270          209 EKYGVS-----GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINE  247 (358)
Q Consensus       209 ~~~~v~-----~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~  247 (358)
                      +.||+-     ..++.+++.+++.....+.+    .++.+++++.|+.
T Consensus       105 ~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~  152 (170)
T d2h01a1         105 RSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA  152 (170)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             HHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence            888873     24676777666554333322    2456666666654

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.01  E-value=0.00064  Score=52.59  Aligned_cols=89  Identities=19%  Similarity=0.230  Sum_probs=61.5

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      +.++++|.|| +.||+.|......|.+..+.++.. .+.++.|.++.                            +..++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  104 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  104 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC-CeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHH
Confidence            4578999999 899999999999999999999763 46777777652                            23566


Q ss_pred             hhcCcc-----CCCeEEEccCCCCCcccc----cCCCCHHHHHHHHhc
Q 018270           90 SKYGVQ-----GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~-----~~P~l~~~~~~~~~~~~~----~g~~~~~~i~~~i~~  128 (358)
                      +.||+-     ..++.++..+++.....+    .-.++.+++.+.|+.
T Consensus       105 ~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~  152 (170)
T d2h01a1         105 RSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA  152 (170)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             HHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence            777763     335667776666432222    123466777777664

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00042  Score=45.75  Aligned_cols=51  Identities=12%  Similarity=0.231  Sum_probs=37.2

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHH---HHHhcCCCcccEEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD---LAEKYGVSGFPTLKF  221 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---l~~~~~v~~~Pti~~  221 (358)
                      ++.|..+||++|......+.+.        ++.+-.+|++.+++   ..+..|..++|++++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~--------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc--------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            5788999999999988777654        34555667765543   345668999998765

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.98  E-value=0.0013  Score=42.95  Aligned_cols=67  Identities=13%  Similarity=0.250  Sum_probs=45.7

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh---hHhhcCccCCCeEEEccCCCCCcccccCCCCHH
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS---LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE  120 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~  120 (358)
                      ++.|..+||++|......+.+        ..+.+-.+|.+++++   ..+.+|..++|++.+  +|     .+-|+.+.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~--------~~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g-----~~igGf~~d   67 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR--------AGLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DG-----EHWSGFRPE   67 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH--------TTCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TT-----EEEESCCHH
T ss_pred             EEEEeCCCChhHHHHHHHHHH--------cCCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CC-----EEEeCCCHh
Confidence            567888999999999887764        235566667766544   446778999998865  33     233445666


Q ss_pred             HHHHH
Q 018270          121 ALAEY  125 (358)
Q Consensus       121 ~i~~~  125 (358)
                      .|.+.
T Consensus        68 ~l~~L   72 (74)
T d1r7ha_          68 RIKQL   72 (74)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66553

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.96  E-value=0.0018  Score=49.97  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=36.7

Q ss_pred             CCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhhcC-CceEEEEEeCc
Q 018270           39 QDRGALVEFYAPWCG-HCKKLAPEYEKLGASFKKA-KSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~~~-~~v~~~~vd~~   83 (358)
                      .+++++|.||..||+ .|....+.+.++.+.+... .++.++.|..+
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            578999999999997 6999999999999888643 35777766654

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.94  E-value=0.0012  Score=50.52  Aligned_cols=42  Identities=12%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD   83 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~   83 (358)
                      .+++++|.|| +.|||.|....+.+.+...+++   .+.++.|..+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d   83 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD---NTVVLTVSMD   83 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT---TEEEEEEESS
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhc---ccceEEEEec
Confidence            5678888888 7899999999999988777764   3555555543

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.90  E-value=0.0025  Score=48.73  Aligned_cols=42  Identities=17%  Similarity=0.291  Sum_probs=31.5

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .++.+++.|| +.||+.|....+.+.+....+.   ++.++.|..+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d   83 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD---NTVVLTVSMD   83 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT---TEEEEEEESS
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhc---ccceEEEEec
Confidence            5678888888 6799999999998888777663   4555555544

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.86  E-value=0.00063  Score=44.56  Aligned_cols=66  Identities=15%  Similarity=0.288  Sum_probs=43.5

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc---HHHHHhcCCCcccEEEEEeCCCcceeeecCCCCHH
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  239 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~  239 (358)
                      ++.|..+||++|......+.+.        ++.+..+|++++   .++.+.+|..++|++++  +| +    +-|+.+++
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~--------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g-~----~igGf~~d   67 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DG-E----HWSGFRPE   67 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TT-E----EEESCCHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc--------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CC-E----EEeCCCHh
Confidence            5789999999999988777653        244445555544   34557789999998654  44 2    33445566


Q ss_pred             HHHH
Q 018270          240 DFVS  243 (358)
Q Consensus       240 ~l~~  243 (358)
                      .|.+
T Consensus        68 ~l~~   71 (74)
T d1r7ha_          68 RIKQ   71 (74)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.85  E-value=0.00071  Score=47.71  Aligned_cols=64  Identities=16%  Similarity=0.261  Sum_probs=44.2

Q ss_pred             HHHhcCCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh-----hHhhcCccCCCeEEE
Q 018270           34 EKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS-----LCSKYGVQGYPTIQW  102 (358)
Q Consensus        34 ~~~~~~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-----l~~~~~i~~~P~l~~  102 (358)
                      ++.+++++  +|.|..+|||+|......|.+..-.+   ..+.+..+|.+.+..     +.+..|...+|++++
T Consensus         6 ~~~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~---~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi   74 (105)
T d1ktea_           6 NSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKE---GLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             HHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCT---TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             HHHhccCC--EEEEECCCCchHHHHHHHHHHhCCcc---ceeeeeecccccccHHHHHHHhhccCCCcCcEEEE
Confidence            44455555  66888999999999999887654433   346677777765532     334457888999865

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0011  Score=43.63  Aligned_cols=51  Identities=12%  Similarity=0.216  Sum_probs=38.6

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhh---HhhcCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL---CSKYGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l---~~~~~i~~~P~l~~  102 (358)
                      ++.|..+||++|......|.+        ..+.+-.+|.+++++.   .+..|...+|++++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~--------~~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN--------RGFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH--------TTCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHh--------cCceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            567888999999998888863        2356667788776643   34568999999886

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.84  E-value=0.0017  Score=42.36  Aligned_cols=72  Identities=15%  Similarity=0.351  Sum_probs=53.6

Q ss_pred             EEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCC-CCHHHHH
Q 018270          164 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV  242 (358)
Q Consensus       164 v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~  242 (358)
                      |....+.|+.|.++....+++++++.  -+..+.++  ++..++. +|||-+.|.+++-  |   ...+.|. .+.+++.
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~g--i~a~v~kv--~d~~ei~-~ygVmstPalvId--g---~vv~~G~vPs~~ei~   73 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELG--IDAEFEKI--KEMDQIL-EAGLTALPGLAVD--G---ELKIMGRVASKEEIK   73 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTT--CCEEEEEE--CSHHHHH-HHTCSSSSCEEET--T---EEEECSSCCCHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcC--CceEEEEe--CCHHHHH-HcCCcCCCEEEEC--C---EEEEEecCCCHHHHH
Confidence            33458899999999999999988874  34444444  4566776 6999999997763  3   2556675 5999999


Q ss_pred             HHH
Q 018270          243 SFI  245 (358)
Q Consensus       243 ~~i  245 (358)
                      +||
T Consensus        74 ~~L   76 (77)
T d1iloa_          74 KIL   76 (77)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            986

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.81  E-value=0.0057  Score=46.72  Aligned_cols=31  Identities=26%  Similarity=0.376  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcC-CCCcccchhhhhHHHHHHHh
Q 018270          158 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAF  188 (358)
Q Consensus       158 ~~~~v~v~f~a-~~C~~c~~~~~~~~~la~~~  188 (358)
                      .++++++.||. .||+.|....+.+.+.....
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~   73 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS   73 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc
Confidence            66789999994 57888999988888776655

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00053  Score=46.33  Aligned_cols=74  Identities=24%  Similarity=0.318  Sum_probs=51.4

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----HHHHHhc--CCCcccEEEEEeCCCcceeeecCCC
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKY--GVSGFPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~--~v~~~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      +|.|..+||++|......+.++...+.   ++.+..+|.+.+    ..+.+..  +++++|.+++  +| +    +-|+.
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g-~----~IGG~   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQ-Q----HIGGY   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TT-E----EEESS
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCC---CceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CC-E----EEECH
Confidence            678999999999999999999998884   567777776543    3444443  3567998644  44 2    22433


Q ss_pred             CHHHHHHHHHHh
Q 018270          237 DLEDFVSFINEK  248 (358)
Q Consensus       237 ~~~~l~~~i~~~  248 (358)
                        ++|.+++++.
T Consensus        73 --~el~~~~~~~   82 (85)
T d1egoa_          73 --TDFAAWVKEN   82 (85)
T ss_dssp             --HHHHHHHHHH
T ss_pred             --HHHHHHHHhc
Confidence              5677777654

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00087  Score=45.19  Aligned_cols=73  Identities=23%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchh----hHhhc--CccCCCeEEEccCCCCCcccccCCC
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKY--GVQGYPTIQWFPKGSLEPKKYEGPR  117 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~i~~~P~l~~~~~~~~~~~~~~g~~  117 (358)
                      +|.|..++||+|.+....+.+....++   .+.+..+|.+.+++    +.+..  ++..+|++++  +|.     +-|+.
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~-----~IGG~   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ-----HIGGY   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE-----EEESS
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCC---CceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCE-----EEECH
Confidence            567889999999999999999988774   46777777765543    22222  3567999765  332     22433


Q ss_pred             CHHHHHHHHhc
Q 018270          118 STEALAEYVNN  128 (358)
Q Consensus       118 ~~~~i~~~i~~  128 (358)
                        +++.+++++
T Consensus        73 --~el~~~~~~   81 (85)
T d1egoa_          73 --TDFAAWVKE   81 (85)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHh
Confidence              456666654

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0038  Score=49.19  Aligned_cols=90  Identities=20%  Similarity=0.276  Sum_probs=64.9

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .++.+++.|| +.||+.|......+.+....|.. .++.++.|.++.                            ..+++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~-~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va  111 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK-LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLS  111 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhcc-CCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHH
Confidence            4678888888 89999999999999999999974 356666666552                            12788


Q ss_pred             HhcCCC------cccEEEEEeCCCccee--eecC--CCCHHHHHHHHHHh
Q 018270          209 EKYGVS------GFPTLKFFPKGNKDGE--EYGG--GRDLEDFVSFINEK  248 (358)
Q Consensus       209 ~~~~v~------~~Pti~~~~~g~~~~~--~~~g--~~~~~~l~~~i~~~  248 (358)
                      +.||+-      .+|+.+++.+.+....  .+..  +++.+++...|+..
T Consensus       112 ~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         112 EDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            899884      3677777776655322  2222  47888888887654

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0022  Score=50.60  Aligned_cols=89  Identities=17%  Similarity=0.238  Sum_probs=59.8

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCcc----------------------------chhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (358)
                      .++++++.|| +.||+.|......|.+..++++.. .+.+..|.++.                            +.+++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va  111 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL-GCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLS  111 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccC-CcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHH
Confidence            3678899999 999999999999999999999853 46666666642                            23456


Q ss_pred             hhcCcc------CCCeEEEccCCCCCcc--cc--cCCCCHHHHHHHHhc
Q 018270           90 SKYGVQ------GYPTIQWFPKGSLEPK--KY--EGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~------~~P~l~~~~~~~~~~~--~~--~g~~~~~~i~~~i~~  128 (358)
                      +.||+-      .+|..++.++.+.+..  .+  .-.+..+++...|+.
T Consensus       112 ~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~a  160 (197)
T d1qmva_         112 EDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQA  160 (197)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHh
Confidence            666663      3455666666554311  11  124667777766654

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0029  Score=49.29  Aligned_cols=42  Identities=17%  Similarity=0.402  Sum_probs=27.6

Q ss_pred             CCcEEEEEcCCCCcccchhhhhHHHHHHHhc-CCCCeEEEEEe
Q 018270          159 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLD  200 (358)
Q Consensus       159 ~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~-~~~~v~~~~vd  200 (358)
                      +.+.+|.|+.-.||+|+.+.|.+..+.+... ....+.+....
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~   60 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYH   60 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEE
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence            4567889999999999999987755444322 12344444443

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0012  Score=52.17  Aligned_cols=92  Identities=12%  Similarity=0.275  Sum_probs=49.1

Q ss_pred             cchhhHhhcCccCCCeEEEccCCCCCccccc--CCCC----HH---HHHHHHhccCCCCcc-ccCCCCCceEcCcccHHH
Q 018270           84 EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYE--GPRS----TE---ALAEYVNNEGGTNVK-IAAVPSNVVVLTADNFDE  153 (358)
Q Consensus        84 ~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~--g~~~----~~---~i~~~i~~~~~~~~~-~~~~~~~v~~l~~~~f~~  153 (358)
                      ++..+++++||+++|++++  +|.-. +.-.  |..+    .+   ++.++|.+.-+.... .......-..++..    
T Consensus        38 ~~~~~a~~~gi~GtPtfiV--nGky~-v~~~~~~~~~~~~~~~~~~~~~~~L~~k~~~~~~~~~~eG~~Y~~l~~p----  110 (195)
T d1un2a_          38 QQEKAAADVQLRGVPAMFV--NGKYQ-LNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKP----  110 (195)
T ss_dssp             HHHHHHHHTTCCSSSEEEE--TTTEE-ECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSC----
T ss_pred             HHHHHHHHhCCCcCCEEEE--CCeee-eccccccccchhhhHHHHHHHHHHHHhCcccccCCCCCCCCcceECCCC----
Confidence            3466789999999999876  44311 2222  2222    23   333455433222111 11111222223221    


Q ss_pred             HHhcCCCcEEEEEcCCCCcccchhhhhHHHHH
Q 018270          154 IVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA  185 (358)
Q Consensus       154 ~~~~~~~~v~v~f~a~~C~~c~~~~~~~~~la  185 (358)
                         ..+++.++.|+.-+||+|..+.|.+..+.
T Consensus       111 ---~~~~~~VvEffsy~Cp~C~~~e~~l~~~~  139 (195)
T d1un2a_         111 ---VAGAPQVLEFFSFFCPHCYQFEEVLHISD  139 (195)
T ss_dssp             ---CTTCCSEEEEECTTCHHHHHHHHTSCHHH
T ss_pred             ---CCCCceEEEEEecCCccccccchhhhHHH
Confidence               13567799999999999999999876443

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.013  Score=46.75  Aligned_cols=95  Identities=17%  Similarity=0.222  Sum_probs=64.6

Q ss_pred             HHHHHhcCCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc--------------------------
Q 018270          151 FDEIVLDKSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------------------------  203 (358)
Q Consensus       151 f~~~~~~~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~--------------------------  203 (358)
                      +.+..  +++.+++.|| +.||+.|......+.+....|... ++.++.+.++.                          
T Consensus        21 Lsd~~--g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~-g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fp   97 (220)
T d1prxa_          21 FHDFL--GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFP   97 (220)
T ss_dssp             HHHHH--TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSC
T ss_pred             eHHHc--CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc-cceeeccccccccchhhhhhhhhhccccccccCcccc
Confidence            44443  5677888888 689999999999999999999743 45555554431                          


Q ss_pred             -----cHHHHHhcCCC------------cccEEEEEeCCCcceee--ec--CCCCHHHHHHHHHHh
Q 018270          204 -----YKDLAEKYGVS------------GFPTLKFFPKGNKDGEE--YG--GGRDLEDFVSFINEK  248 (358)
Q Consensus       204 -----~~~l~~~~~v~------------~~Pti~~~~~g~~~~~~--~~--g~~~~~~l~~~i~~~  248 (358)
                           +..+++.||+-            ..++.+++.+.+.....  |.  -+++.++++.-|...
T Consensus        98 llsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_          98 IIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             EEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             cccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence                 23788999874            24667777666553222  22  247888888877653

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0063  Score=48.76  Aligned_cols=89  Identities=16%  Similarity=0.136  Sum_probs=61.5

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc-------------------------------cch
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-------------------------------EHK   86 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------------------------------~~~   86 (358)
                      +++++++.|| ++||+.|......|.+..++++..+ +.+..|.++                               .+.
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g-~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~  104 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN-VKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNR  104 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTC
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc-ceeeccccccccchhhhhhhhhhccccccccCcccccccCccc
Confidence            4678888888 6899999999999999999998543 555555443                               234


Q ss_pred             hhHhhcCcc------------CCCeEEEccCCCCCcc--cc--cCCCCHHHHHHHHhc
Q 018270           87 SLCSKYGVQ------------GYPTIQWFPKGSLEPK--KY--EGPRSTEALAEYVNN  128 (358)
Q Consensus        87 ~l~~~~~i~------------~~P~l~~~~~~~~~~~--~~--~g~~~~~~i~~~i~~  128 (358)
                      ++++.||+-            ..+.+++.++.+.+..  .|  .-.|+.+++...|+.
T Consensus       105 ~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~a  162 (220)
T d1prxa_         105 ELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS  162 (220)
T ss_dssp             HHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             HHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHH
Confidence            577888764            3366777777664311  11  124688888877665

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0017  Score=50.70  Aligned_cols=29  Identities=17%  Similarity=0.462  Sum_probs=24.0

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHH
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGA   67 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~   67 (358)
                      .+.+.+|+|+.-.||||+.+.+.+..+.+
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~   45 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDN   45 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHH
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHH
Confidence            45678999999999999999998755544

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.50  E-value=0.0011  Score=46.66  Aligned_cols=56  Identities=16%  Similarity=0.264  Sum_probs=40.5

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH-----HHHHhcCCCcccEEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKYGVSGFPTLKF  221 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----~l~~~~~v~~~Pti~~  221 (358)
                      +|.|..+||++|......+.++...+   ..+.+..+|.+.+.     .+.+..|...+|.+++
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~---~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi   74 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE---GLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT---TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc---ceeeeeecccccccHHHHHHHhhccCCCcCcEEEE
Confidence            77999999999999988887764433   35677788766443     2344457888998644

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.45  E-value=0.0018  Score=43.26  Aligned_cols=51  Identities=14%  Similarity=0.271  Sum_probs=35.5

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc----HHHHHhcCCCcccEEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~l~~~~~v~~~Pti~~  221 (358)
                      +..|..+||++|.+....+++.        ++.+..+|++++    ..+.+..|..++|.+++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE
Confidence            5678899999999988777654        233444555533    34566678999998643

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.19  E-value=0.0041  Score=40.42  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=35.9

Q ss_pred             EEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCccc-HHHHHhcCCCcccEEEE
Q 018270          163 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-KDLAEKYGVSGFPTLKF  221 (358)
Q Consensus       163 ~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pti~~  221 (358)
                      ++.|..++|++|+.....+.+..-      .+....++.+.. ..+.+..+..++|.+++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~~i------~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDKGL------SFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHTC------CCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHcCC------CeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            688999999999999887776532      233444443322 34555678889998643

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=96.15  E-value=0.0024  Score=48.86  Aligned_cols=57  Identities=11%  Similarity=0.316  Sum_probs=40.5

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc---hhhHhhcCccCCC
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---KSLCSKYGVQGYP   98 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~P   98 (358)
                      .++++++.|| +.||+.|....+.|.+...+++   ++.++.|.++..   ..+++.+++..++
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~---~~~vi~iS~d~~~~~~~~~~~~~~~~~~  101 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS---NTIVLCISADLPFAQARFCGAEGIENAK  101 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST---TEEEEEEESSCHHHHTTCTTTTTCTTEE
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhc---cceEEeecCCcHHHHHHHHHHhCCcccc
Confidence            4678888898 5678889999999999988885   366777776533   3445555554333

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.14  E-value=0.0039  Score=41.48  Aligned_cols=51  Identities=14%  Similarity=0.215  Sum_probs=36.3

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch----hhHhhcCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----SLCSKYGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~P~l~~  102 (358)
                      +..|..+|||+|.+....+.+.        .+.+..+|.++++    ++.+..|...+|++++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE
Confidence            4567889999999888777542        2556667776554    3445568899999864

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=95.76  E-value=0.012  Score=38.08  Aligned_cols=51  Identities=18%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             EEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccc---hhhHhhcCccCCCeEEE
Q 018270           44 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---KSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        44 lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~P~l~~  102 (358)
                      ++.|..++||+|+++...|.+..        +.+..+|.+.+   ..+.+..+...+|.+++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~~--------i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDKG--------LSFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHT--------CCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--------CCeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            57788999999999998887542        33444455443   23445668889999764

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.019  Score=43.11  Aligned_cols=86  Identities=9%  Similarity=0.069  Sum_probs=51.3

Q ss_pred             CCCcEEEEEECCCCh-hhhhhhHHHHHHHHHhhcC--CceEEEEEeCccch----------------------------h
Q 018270           39 QDRGALVEFYAPWCG-HCKKLAPEYEKLGASFKKA--KSVLIGKVDCDEHK----------------------------S   87 (358)
Q Consensus        39 ~~~~~lv~fya~~c~-~C~~~~~~~~~~~~~~~~~--~~v~~~~vd~~~~~----------------------------~   87 (358)
                      .++++||.||..||+ .|......+..+...+...  ..+.+..+..+...                            .
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  104 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhccccccccccccchhhhhh
Confidence            579999999999986 5666666666555554321  23333333322110                            0


Q ss_pred             hHh----------------hcCccCCCeEEEccCCCCCcccccCCCCHHHHHH
Q 018270           88 LCS----------------KYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE  124 (358)
Q Consensus        88 l~~----------------~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~  124 (358)
                      ...                .+.+.+.|++++.++.+.....|.+..+.+.+.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~  157 (169)
T d2b7ka1         105 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVD  157 (169)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHH
T ss_pred             hhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHH
Confidence            111                1245677999999988877667777666665443

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.70  E-value=0.0078  Score=45.94  Aligned_cols=44  Identities=11%  Similarity=0.135  Sum_probs=31.3

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccch
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK   86 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~   86 (358)
                      .++++++.|| +.|||.|....+.|.+..+..    .+.++.|..+...
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~----g~~vv~Is~d~~~   86 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS----GATVLCVSKDLPF   86 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT----TCEEEEEESSCHH
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc----cccccccccchHH
Confidence            5678999999 558888999988887766654    2556666655443

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.51  E-value=0.2  Score=34.19  Aligned_cols=106  Identities=13%  Similarity=0.122  Sum_probs=79.1

Q ss_pred             ceEcCcccHHHHHhc-CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCC-cc
Q 018270          143 VVVLTADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVS-GF  216 (358)
Q Consensus       143 v~~l~~~~f~~~~~~-~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~-~~  216 (358)
                      +..+...+.-+...+ -....+|.|--+-.+...++.+.++++|+.+..++++.++.||-++.+    -+-+.|+|. .-
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~   81 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSA   81 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTS
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCC
Confidence            345666777676633 245667778777777888999999999999998999999999999765    456688887 46


Q ss_pred             cEEEEEeCCCcceeeecC-----CCCHHHHHHHHHHh
Q 018270          217 PTLKFFPKGNKDGEEYGG-----GRDLEDFVSFINEK  248 (358)
Q Consensus       217 Pti~~~~~g~~~~~~~~g-----~~~~~~l~~~i~~~  248 (358)
                      |++=+..-.....+-|.-     -.++++|.+||.+.
T Consensus        82 PqIGVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedV  118 (119)
T d1a8ya3          82 PQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDV  118 (119)
T ss_dssp             CEEEEEETTTCCEEECC-------CCHHHHHHHHHHH
T ss_pred             CceeeEecccCcceeeecccccccccHHHHHHHHHHh
Confidence            999998765554444432     24899999999764

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.011  Score=44.45  Aligned_cols=33  Identities=12%  Similarity=-0.084  Sum_probs=22.8

Q ss_pred             CCCcccEEEEEeCCCcceeeecCCCCHHHHHHH
Q 018270          212 GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF  244 (358)
Q Consensus       212 ~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~  244 (358)
                      .+...|+++++.+.+.....|.+..+++.+.+-
T Consensus       126 ~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~  158 (169)
T d2b7ka1         126 LVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDK  158 (169)
T ss_dssp             CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHH
T ss_pred             eeeccceEEEECCCCeEEEEECCCCCHHHHHHH
Confidence            355678888888777766778777666654433

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=95.24  E-value=0.025  Score=42.88  Aligned_cols=42  Identities=21%  Similarity=0.396  Sum_probs=32.7

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD  202 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~  202 (358)
                      .++.+++.|| +.||+.|....+.|.+...+++   ++.++-|.++
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~---~~~vi~iS~d   83 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS---NTIVLCISAD   83 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST---TEEEEEEESS
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhc---cceEEeecCC
Confidence            4678888888 5578889999999999999885   4566666655

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=94.99  E-value=0.029  Score=44.60  Aligned_cols=89  Identities=13%  Similarity=0.210  Sum_probs=61.6

Q ss_pred             CCCcEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCc----------------------------cchhhH
Q 018270           39 QDRGALVEFY-APWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD----------------------------EHKSLC   89 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~----------------------------~~~~l~   89 (358)
                      +++.++++|| ++||+.|......|.+...+|+.. ++.+..+.++                            .+.+++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~-~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va  107 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELA  107 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc-ceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHH
Confidence            5788899999 899999999999999999999853 4666666554                            233577


Q ss_pred             hhcCccC------------CCeEEEccCCCCCcc--cc--cCCCCHHHHHHHHhc
Q 018270           90 SKYGVQG------------YPTIQWFPKGSLEPK--KY--EGPRSTEALAEYVNN  128 (358)
Q Consensus        90 ~~~~i~~------------~P~l~~~~~~~~~~~--~~--~g~~~~~~i~~~i~~  128 (358)
                      +.||+-.            .-++++.++.+....  .|  .-.++.+++.+.|+.
T Consensus       108 ~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~a  162 (219)
T d1xcca_         108 NKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKS  162 (219)
T ss_dssp             HHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHH
Confidence            7887621            135666666664311  12  235788888887764

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=94.85  E-value=0.077  Score=42.04  Aligned_cols=90  Identities=13%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             CCCcEEEEEc-CCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcc----------------------------cHHHH
Q 018270          158 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA  208 (358)
Q Consensus       158 ~~~~v~v~f~-a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~~~l~  208 (358)
                      .++.+++.|| +.||+.|......|.+...+|... ++.++.+.+|.                            +..++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~-~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va  107 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELA  107 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc-ceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHH
Confidence            6788888888 899999999999999999999743 56666666552                            12688


Q ss_pred             HhcCCCc------------ccEEEEEeCCCccee--ee--cCCCCHHHHHHHHHHh
Q 018270          209 EKYGVSG------------FPTLKFFPKGNKDGE--EY--GGGRDLEDFVSFINEK  248 (358)
Q Consensus       209 ~~~~v~~------------~Pti~~~~~g~~~~~--~~--~g~~~~~~l~~~i~~~  248 (358)
                      +.||+-.            ..+.++..+.+....  .|  .-+++.++++..|+..
T Consensus       108 ~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         108 NKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence            8998821            235666666655322  23  2257899998888654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.0064  Score=47.80  Aligned_cols=42  Identities=17%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHH---HHHHHhhcCCceEEEEEeC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYE---KLGASFKKAKSVLIGKVDC   82 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~---~~~~~~~~~~~v~~~~vd~   82 (358)
                      .+++.+++|++-+||||..+.|.+.   ++.+.+.  .++.|..+..
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~--~~v~~~~~~~  156 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP--EGVKMTKYHV  156 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC--TTCCEEEEEC
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcC--CCcEEEEEec
Confidence            3578899999999999999999875   4555554  3455555444

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=92.06  E-value=0.92  Score=30.66  Aligned_cols=86  Identities=13%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             CCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCH
Q 018270           40 DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST  119 (358)
Q Consensus        40 ~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~  119 (358)
                      .++..+..|...-+.+.+....+.++-+.+.....+.+=.||..+++++++.++|-..||++=..+...  .++-|..-.
T Consensus        10 ~~~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~P~--q~l~Gs~i~   87 (105)
T d1t4za_          10 AQPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPGSR--QVLSGIDLT   87 (105)
T ss_dssp             CCCEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESSCC--EEEESSCHH
T ss_pred             CCCeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCCCcc--eeecChhHH
Confidence            344555555555577776666666666655432358888999999999999999999999986655543  467787767


Q ss_pred             HHHHHHHh
Q 018270          120 EALAEYVN  127 (358)
Q Consensus       120 ~~i~~~i~  127 (358)
                      +.+..|.-
T Consensus        88 ~ql~~w~p   95 (105)
T d1t4za_          88 DQLANQLP   95 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhhhhh
Confidence            77777653

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.05  E-value=0.093  Score=36.51  Aligned_cols=61  Identities=16%  Similarity=0.287  Sum_probs=37.2

Q ss_pred             cHHHHHhcCCCcEEEEEcC-----CCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccH----HHHHhcCCCcccEEE
Q 018270          150 NFDEIVLDKSKDVLVEFYA-----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLK  220 (358)
Q Consensus       150 ~f~~~~~~~~~~v~v~f~a-----~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~  220 (358)
                      ..+.++  ...+|+| |..     |+|+.|......+.++        ++.+..+|.++.+    .+.+..+...+|.++
T Consensus         7 ~i~~~i--~~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIF   75 (109)
T d1wika_           7 GLKVLT--NKASVML-FMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY   75 (109)
T ss_dssp             CHHHHH--TTSSEEE-EESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred             HHHHHH--hcCCEEE-EeCCCCCCCCChHHHHHHHHHHhc--------CCCceEEEecccHHHHHHHHHhcCCCCCCeEE
Confidence            345555  3344433 533     8899999988777644        2344555665543    345556778899765


Q ss_pred             E
Q 018270          221 F  221 (358)
Q Consensus       221 ~  221 (358)
                      +
T Consensus        76 i   76 (109)
T d1wika_          76 V   76 (109)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.81  E-value=0.62  Score=31.57  Aligned_cols=77  Identities=8%  Similarity=0.000  Sum_probs=54.7

Q ss_pred             CCCcEEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCC
Q 018270           39 QDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS  118 (358)
Q Consensus        39 ~~~~~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~  118 (358)
                      =.+++-+..+.+.|+.|.++...+++++..-   +++.+..-+          .+....|++.+..+|....++|.|...
T Consensus        17 l~~~V~l~~~~~~~~~s~el~~~l~eva~lS---dkI~~~~~~----------~~~~r~Ps~~i~~~g~~~gI~F~GiP~   83 (102)
T d1hyua3          17 LTKPVELIATLDDSAKSAEIKELLAEIAELS---DKVTFKEDN----------TLPVRKPSFLITNPGSQQGPRFAGSPL   83 (102)
T ss_dssp             CCSCEEEEEECCSSHHHHHHHHHHHHHHTTC---TTEEEEECT----------TSSSCSSEEEEECTTCCCSCEEESCCC
T ss_pred             CCCCEEEEEEeCCChhHHHHHHHHHHHHhhC---CCeEEEEcC----------CCCCCCCeEEEecCCCEeeeEEecCCC
Confidence            3567777788889999999988888888753   556664322          222457999988777666688888766


Q ss_pred             HHHHHHHHhc
Q 018270          119 TEALAEYVNN  128 (358)
Q Consensus       119 ~~~i~~~i~~  128 (358)
                      =-++..||..
T Consensus        84 GhEF~Slila   93 (102)
T d1hyua3          84 GHEFTSLVLA   93 (102)
T ss_dssp             GGGHHHHHHH
T ss_pred             cccHHHHHHH
Confidence            6666666654

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.75  E-value=0.41  Score=32.51  Aligned_cols=80  Identities=14%  Similarity=0.124  Sum_probs=57.5

Q ss_pred             cCCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCcceeeecCCC
Q 018270          157 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  236 (358)
Q Consensus       157 ~~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~  236 (358)
                      .=.++|-+..+...|..|.++...++++|.--   +++.+..-+.          +....|++.+..+|....++|.|-.
T Consensus        16 ~l~~~V~l~~~~~~~~~s~el~~~l~eva~lS---dkI~~~~~~~----------~~~r~Ps~~i~~~g~~~gI~F~GiP   82 (102)
T d1hyua3          16 KLTKPVELIATLDDSAKSAEIKELLAEIAELS---DKVTFKEDNT----------LPVRKPSFLITNPGSQQGPRFAGSP   82 (102)
T ss_dssp             TCCSCEEEEEECCSSHHHHHHHHHHHHHHTTC---TTEEEEECTT----------SSSCSSEEEEECTTCCCSCEEESCC
T ss_pred             hCCCCEEEEEEeCCChhHHHHHHHHHHHHhhC---CCeEEEEcCC----------CCCCCCeEEEecCCCEeeeEEecCC
Confidence            34567777777778889999988888888743   4565543221          1234799999888766778999988


Q ss_pred             CHHHHHHHHHHhc
Q 018270          237 DLEDFVSFINEKC  249 (358)
Q Consensus       237 ~~~~l~~~i~~~~  249 (358)
                      .-.++..||...+
T Consensus        83 ~GhEF~Slilail   95 (102)
T d1hyua3          83 LGHEFTSLVLALL   95 (102)
T ss_dssp             CGGGHHHHHHHHH
T ss_pred             CcccHHHHHHHHH
Confidence            8888888876544

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.04  E-value=0.18  Score=34.92  Aligned_cols=62  Identities=15%  Similarity=0.220  Sum_probs=40.3

Q ss_pred             hhHHHHhcCCCcEEEEEEC-----CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhh----HhhcCccCCCeEE
Q 018270           31 DNFEKEVGQDRGALVEFYA-----PWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSL----CSKYGVQGYPTIQ  101 (358)
Q Consensus        31 ~~f~~~~~~~~~~lv~fya-----~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~P~l~  101 (358)
                      ..++.++++ .+++| |--     |.||+|.+....|.+.        .+.+..+|.++++++    .+..+...+|.++
T Consensus         6 ~~i~~~i~~-~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIF   75 (109)
T d1wika_           6 SGLKVLTNK-ASVML-FMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY   75 (109)
T ss_dssp             CCHHHHHTT-SSEEE-EESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred             HHHHHHHhc-CCEEE-EeCCCCCCCCChHHHHHHHHHHhc--------CCCceEEEecccHHHHHHHHHhcCCCCCCeEE
Confidence            345566654 44555 432     7899999998877532        255666777776544    3445778899987


Q ss_pred             E
Q 018270          102 W  102 (358)
Q Consensus       102 ~  102 (358)
                      +
T Consensus        76 i   76 (109)
T d1wika_          76 V   76 (109)
T ss_dssp             C
T ss_pred             E
Confidence            5

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.32  E-value=1.4  Score=34.61  Aligned_cols=84  Identities=19%  Similarity=0.222  Sum_probs=55.7

Q ss_pred             CCCcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCc--------c---c-------HHHHHhcCCCcccEE
Q 018270          158 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------K---Y-------KDLAEKYGVSGFPTL  219 (358)
Q Consensus       158 ~~~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~--------~---~-------~~l~~~~~v~~~Pti  219 (358)
                      ..+.|+=+|++.||..|......+.+|++.    ++++...+..+        +   .       ...+..++..++||=
T Consensus         4 ~~~aVVElFTSqgCssCPpAd~~L~~L~~~----~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTP   79 (225)
T d2axoa1           4 AVKGVVELFTSQGCASCPPADEALRKMIQK----GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTP   79 (225)
T ss_dssp             CCCCEEEEEECTTCTTCHHHHHHHHHHHHH----TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSS
T ss_pred             CCCcEEEEeeCCCCCCCHHHHHHHHHhhCC----CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCce
Confidence            345677889999999999999999999874    46766666554        1   1       235666788886654


Q ss_pred             EEEeCCCcceeeecCCCCHHHHHHHHHHhc
Q 018270          220 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC  249 (358)
Q Consensus       220 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~  249 (358)
                      -++-+|..    .....+...+..-|....
T Consensus        80 q~vvnG~~----~~~gs~~~~~~~~i~~~~  105 (225)
T d2axoa1          80 QAILNGRD----HVKGADVRGIYDRLDAFK  105 (225)
T ss_dssp             EEEETTTE----EEETTCHHHHHHHHHHHH
T ss_pred             eEEEeCcc----cccccCHHHHHHHHHHHh
Confidence            44455632    223456666666666554

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.87  E-value=3.5  Score=26.69  Aligned_cols=80  Identities=13%  Similarity=0.161  Sum_probs=57.7

Q ss_pred             HHHHHhcCC--CcEEEEEcCCCCcccchhhhhHHHHHHHhcCCCCeEEEEEeCcccHHHHHhcCCCcccEEEEEeCCCc-
Q 018270          151 FDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-  227 (358)
Q Consensus       151 f~~~~~~~~--~~v~v~f~a~~C~~c~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-  227 (358)
                      .+.++.+..  .||+|.+.-.    .+.+...|.++|..+.  +++.|+..+..++           =|.+-++-++.. 
T Consensus         8 l~~~l~n~t~v~pVVV~~Gv~----d~~fNeTF~~~A~~l~--~Dy~Fvs~~~~~~-----------~~kLsV~LP~e~d   70 (98)
T d2b5ea2           8 LPAYLANETFVTPVIVQSGKI----DADFNATFYSMANKHF--NDYDFVSAENADD-----------DFKLSIYLPSAMD   70 (98)
T ss_dssp             HHHHHHHSCCSSCEEEEEESC----CHHHHHHHHHHHHHTT--TTCEEEEEECTTS-----------CCEEEEEETTEEE
T ss_pred             hHHHHhcCcccCCEEEeCCcc----ccchhHHHHHHHHHhh--cceEEEeccCCCC-----------CccEEEECCCCCC
Confidence            555565666  4889988632    1578889999999985  5788888664322           356667766754 


Q ss_pred             ceeeecCC----CCHHHHHHHHHH
Q 018270          228 DGEEYGGG----RDLEDFVSFINE  247 (358)
Q Consensus       228 ~~~~~~g~----~~~~~l~~~i~~  247 (358)
                      +++.|.|.    .+++.+.+||+-
T Consensus        71 EPIvf~G~~~~i~~a~~l~~WlkV   94 (98)
T d2b5ea2          71 EPVVYNGKKADIADADVFEKWLQV   94 (98)
T ss_dssp             EEEECCSCHHHHTSHHHHHHHHHH
T ss_pred             CCeEEcCccCCcccHHHHHHHHee
Confidence            89999996    467789999974

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=83.53  E-value=1.9  Score=27.05  Aligned_cols=72  Identities=17%  Similarity=0.189  Sum_probs=46.1

Q ss_pred             EEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEEccCCCCCcccccCCCCHHHHHHH
Q 018270           46 EFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEY  125 (358)
Q Consensus        46 ~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~~  125 (358)
                      .|+.+.||+|++..-.+....-.      +.+..++.+....+.+..+-..+|++..  +++..      ..+...|.+|
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi~------~e~~~~~~~~~~~~~~~~p~~~VP~L~~--~dg~~------i~eS~~I~~y   68 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNIP------VELHVLLNDDAETPTRMVGQKQVPILQK--DDSRY------MPESMDIVHY   68 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTCC------CEEEECCTTTTHHHHHHHSSSCCCEEEE--TTTEE------EECHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCCC------cccccccccchHHHHHhCCCCceEEEEE--cCCCE------EecHHHHHHH
Confidence            46778899998887766643322      3334445555566667778889998864  22211      2346788888


Q ss_pred             HhccCC
Q 018270          126 VNNEGG  131 (358)
Q Consensus       126 i~~~~~  131 (358)
                      +++..|
T Consensus        69 Ld~~~G   74 (75)
T d1g7oa2          69 VDKLDG   74 (75)
T ss_dssp             HHHHTT
T ss_pred             HHHhhC
Confidence            887543

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=82.77  E-value=0.57  Score=30.78  Aligned_cols=59  Identities=10%  Similarity=0.031  Sum_probs=49.1

Q ss_pred             EEEEEECCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeCccchhhHhhcCccCCCeEEE
Q 018270           43 ALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW  102 (358)
Q Consensus        43 ~lv~fya~~c~~C~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~  102 (358)
                      ++-.|-+...+.+.+....+.++-+.+-+ +...+-.||..+++++++.++|-..||++=
T Consensus         3 ~L~LyVaG~tp~S~~ai~nl~~i~e~~l~-~~y~LeVIDv~~qP~lAe~~~IvATPtLvk   61 (90)
T d1r5pa_           3 VLKLYVAGNTPNSVRALKTLKNILEQEFQ-GIYALKVIDVLKNPQLAEEDKILATPTLSK   61 (90)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHHHHHHT-TSEEEEEEETTTSCSCCTTCCEECHHHHGG
T ss_pred             EEEEEEcCCChhHHHHHHHHHHHHHHhcC-CcEEEEEEEcccCHhHHhhCCEEeehHHHh
Confidence            45667787788899988888888776543 568899999999999999999999999763

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.86  E-value=2.1  Score=31.40  Aligned_cols=36  Identities=11%  Similarity=0.217  Sum_probs=27.7

Q ss_pred             CCCcEEEEEE-CCCChhh-hhhhHHHHHHHHHhhcCCc
Q 018270           39 QDRGALVEFY-APWCGHC-KKLAPEYEKLGASFKKAKS   74 (358)
Q Consensus        39 ~~~~~lv~fy-a~~c~~C-~~~~~~~~~~~~~~~~~~~   74 (358)
                      +++.+++.|| ..|++.| .+..+.+.+....+...+.
T Consensus        30 ~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~   67 (161)
T d1hd2a_          30 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGV   67 (161)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTC
T ss_pred             CCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCC
Confidence            4677888888 6889999 5688888888777765543