Citrus Sinensis ID: 018271
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | 2.2.26 [Sep-21-2011] | |||||||
| Q9P3K8 | 598 | Probable transporter MCH1 | N/A | no | 0.603 | 0.361 | 0.252 | 8e-08 | |
| Q6CGU8 | 486 | Probable transporter MCH1 | yes | no | 0.374 | 0.275 | 0.285 | 3e-06 | |
| Q96TW9 | 489 | Probable transporter MCH1 | N/A | no | 0.555 | 0.406 | 0.215 | 5e-05 | |
| Q4IM48 | 572 | Probable transporter MCH1 | yes | no | 0.567 | 0.354 | 0.254 | 0.0001 |
| >sp|Q9P3K8|MCH1_NEUCR Probable transporter MCH1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mch-1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 109/257 (42%), Gaps = 41/257 (15%)
Query: 114 PGEESQVKAEFDDKKLKDEEDMN--ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIG 171
P +S + E D+ ++K +N + + W + +G G A +NN+ +
Sbjct: 323 PDNDSDSEEEDDNARIKKTWVLNAETRRFLTDHTMWCFALGFFLMIGPGEAFINNLGTVI 382
Query: 172 ESL--------GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVL---------------- 207
++L G PTSA VS+ I + L R G ++D++
Sbjct: 383 KTLYPPHLKFVGEPTSAATH-VSIVGITSTLVRLLTGSLTDLLAPSPQARHVQITSSGTL 441
Query: 208 --HRMGWERPSFIAITLATMSVGHIVVASGFPGN----LYVGSIIVGVCYGCQWSLMPTI 261
R R SF+ T+SVG +ASG+ N +V S +VG YG +SL P I
Sbjct: 442 ERKRFSLSRVSFLLFFAVTLSVGLATLASGWIQNHGERFWVASGLVGAGYGAVFSLTPII 501
Query: 262 TYEIFGVGHMGTIFNTIAIASPVGS----YVCSVRIIGYIYDNVASGEGNS----CNGTH 313
I+GV + T + +A+ +G+ V S + ++G+G C G+
Sbjct: 502 ITVIWGVENFATNWGIVAMFPALGATFWGLVYSAVYQSGVEKAASNGQGGEEDQFCYGSE 561
Query: 314 CFMLSFLIMASVAFVGC 330
C+ +F MA+ +V C
Sbjct: 562 CYASAFWAMAASVWVAC 578
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Probable transporter. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 13/147 (8%)
Query: 185 VSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG----FPGNL 240
VSL++ ++ + R G+ S+ + + RP +++ + H++V SG F
Sbjct: 316 VSLFATFSTVSRLVVGFSSEAMESHV--SRPVLLSVIALVAACIHLMVPSGIFTVFDNAK 373
Query: 241 Y--VGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 298
Y V +I+ G YG ++L+PTI +++G+ ++GTI+ + +A VGS + + +Y
Sbjct: 374 YFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGL-LFAKVY 432
Query: 299 DNVAS-GEGNS---CNGTHCFMLSFLI 321
D + G G+ C+G HC+ L+F+I
Sbjct: 433 DAASEVGVGSMSQVCSGVHCYGLTFVI 459
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Probable transporter. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 94/209 (44%), Gaps = 10/209 (4%)
Query: 114 PGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES 173
P +E + ++ L L+ + ++ ++L ++L +G + N+ + ++
Sbjct: 237 PNQEHE-----NNDDLVPNHKSKFLKFIKDISTYVLLFSLLLSIGPSEMYITNMGSLVKA 291
Query: 174 LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA--ITLATMSVGHIV 231
+ P S I+ V++ ++++ L R G +SD ++ R + I L + I
Sbjct: 292 IT-PNSLISDQVAIHAVFSTLSRLSLGALSDFLVTNYQISRSWLLLSIIVLGFFTQIFIA 350
Query: 232 VASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291
++ Y+ S + G YG ++L PT+ + I+G G+ + + IA +GS +
Sbjct: 351 TSTFVKDQYYIISALSGFSYGGLFTLYPTVIFSIWGPEIFGSAWGSFMIAPAIGSTTFGM 410
Query: 292 RIIGYIYDNVASGEGNSCNGTHCFMLSFL 320
+ G +YD+ S G +C L FL
Sbjct: 411 -VFGLVYDSACGVFAESTTG-NCVSLVFL 437
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Probable transporter. Hansenula anomala (taxid: 4927) |
| >sp|Q4IM48|MCH1_GIBZE Probable transporter MCH1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 48/251 (19%)
Query: 115 GEESQVKAEFDDKKLKDEEDMNILQSVCTLNF------WLLFVAMLCGMGSGLATVNNIS 168
GEE++ A D K + N + + T +F W +A L +G G A +NN+
Sbjct: 293 GEETESSALLDPSKDNAKWKKNWVLNAETRSFLADRTMWPFALAFLLIVGPGEAFINNLG 352
Query: 169 QIGESLGYP--------TSAINSLVSLWSIWNFLGRFGGGYVSDI--------------- 205
I +L P TSA VS++ I N R G ++D+
Sbjct: 353 TIIGTLTPPEMEGWSHRTSAATH-VSIFGITNTASRIFIGTLTDLLAPYPHTQHVQGPST 411
Query: 206 ---VLHRMGWERPSFIAITLATMSVGHIVVASGFPGN----LYVGSIIVGVCYGCQWSLM 258
V R R +F+A + +S+G +++ASG N ++ S +VG YG +SL
Sbjct: 412 RSAVSSRFSISRVAFMAFFASMLSIGLLILASGLVQNHAERFWLVSGLVGAGYGAIFSLT 471
Query: 259 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG-----EGNS----- 308
P + I+GV + T + I + GS + + Y N A+ EG+
Sbjct: 472 PLMVTIIWGVENFATNYGLIGMLPAAGSTFWGL-VYSATYQNGANKSKAGPEGSDRDDLF 530
Query: 309 CNGTHCFMLSF 319
C G C+ ++
Sbjct: 531 CYGEQCYAPTY 541
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Probable transporter. Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| 224133334 | 530 | predicted protein [Populus trichocarpa] | 0.924 | 0.624 | 0.642 | 1e-125 | |
| 359491754 | 559 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.620 | 0.643 | 1e-124 | |
| 297734047 | 612 | unnamed protein product [Vitis vinifera] | 0.927 | 0.542 | 0.640 | 1e-121 | |
| 356508612 | 557 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.635 | 0.577 | 1e-120 | |
| 255540871 | 551 | conserved hypothetical protein [Ricinus | 0.983 | 0.638 | 0.651 | 1e-120 | |
| 356519027 | 557 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.635 | 0.574 | 1e-118 | |
| 29824365 | 533 | unknown protein [Arabidopsis thaliana] g | 0.930 | 0.624 | 0.601 | 1e-114 | |
| 15221382 | 533 | nodulin-like and major facilitator domai | 0.930 | 0.624 | 0.598 | 1e-113 | |
| 225456622 | 537 | PREDICTED: uncharacterized protein LOC10 | 0.944 | 0.629 | 0.579 | 1e-110 | |
| 449477604 | 543 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.969 | 0.639 | 0.573 | 1e-110 |
| >gi|224133334|ref|XP_002321541.1| predicted protein [Populus trichocarpa] gi|222868537|gb|EEF05668.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/352 (64%), Positives = 268/352 (76%), Gaps = 21/352 (5%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
MSLVR + TN+ DDKK+LNAFSAV+L IAAYL IIIILENI + ARIITF LL L+
Sbjct: 197 MSLVRNYDTNTKDDKKYLNAFSAVSLIIAAYLTIIIILENISSLSSLARIITFTVLLLLV 256
Query: 61 SSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQV 120
+SPLGIA++A RED+ R + QR + Q+ V E+
Sbjct: 257 ASPLGIAVRAHREDSDRYAQALLEQRG---------------SKQNPVISSEIS------ 295
Query: 121 KAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA 180
KA D+++L DE +MN+LQ++C++NFWLLF+AM CG+GSGLA +NNISQIGESLGY +
Sbjct: 296 KAASDNERLSDEGNMNLLQALCSVNFWLLFIAMFCGLGSGLAMINNISQIGESLGYTATE 355
Query: 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL 240
NSLVSL SIWNFLGRFG G+VSDI LHR GW RP F+A+TLA M++GHI+VA+GF NL
Sbjct: 356 RNSLVSLLSIWNFLGRFGAGFVSDIFLHRGGWARPLFVAVTLAIMTIGHIIVAAGFSKNL 415
Query: 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300
Y+GS++VGV YG QWSLMPTIT EIFGVGHMGTIFNTIAIASPVGSY SVR+IG+IYD
Sbjct: 416 YLGSVLVGVAYGSQWSLMPTITSEIFGVGHMGTIFNTIAIASPVGSYTFSVRVIGFIYDK 475
Query: 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRL 352
V SGE N+C G+ CFMLSF+IMASVAF G LVA LLF RTRRFYK VV RRL
Sbjct: 476 VGSGENNTCFGSRCFMLSFMIMASVAFFGVLVALLLFFRTRRFYKSVVFRRL 527
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491754|ref|XP_002266530.2| PREDICTED: uncharacterized protein LOC100244916 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/356 (64%), Positives = 274/356 (76%), Gaps = 9/356 (2%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
M LVRI ++ +KK LN FS VAL +AAYLMI+IILENIFTFPLWARI T + LL LL
Sbjct: 206 MCLVRIDERDTQGNKKQLNRFSTVALLVAAYLMIVIILENIFTFPLWARIATLILLLLLL 265
Query: 61 SSPLGIAIKAQREDTTRLSPTF-ATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQ 119
+SPLGIA A ++++ S +++RSPL+ + S ++S++ H
Sbjct: 266 ASPLGIAANALKDESEISSQGLVSSERSPLLSDNGSLQSERWSSAAGDPKEHH------- 318
Query: 120 VKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTS 179
A+ D L+DEED+N++Q++ T NFWLLF+AM CGMGSGLAT+NNISQIGESLGY T
Sbjct: 319 -AADEDTPMLQDEEDLNVVQAMRTGNFWLLFIAMACGMGSGLATINNISQIGESLGYTTV 377
Query: 180 AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGN 239
IN+LVSLWSIWNFLGRFG GYVSDI+LHR GW RP + ITLATM++GH+++ASGF GN
Sbjct: 378 EINTLVSLWSIWNFLGRFGAGYVSDILLHRRGWARPLLMVITLATMTIGHVIIASGFAGN 437
Query: 240 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 299
LYVGS+IVGVCYG QWSLMPTIT E+FGVGHMGTIFNTIAIASPVGSY+ SVR+IGYIYD
Sbjct: 438 LYVGSVIVGVCYGSQWSLMPTITSELFGVGHMGTIFNTIAIASPVGSYLLSVRVIGYIYD 497
Query: 300 NVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHS 355
ASG+ NSC+GTHCFMLSFLI+ V G LVA LF RT+RFYK VVLRRL S
Sbjct: 498 KEASGKQNSCSGTHCFMLSFLIIGCVTLFGSLVASALFFRTKRFYKLVVLRRLNLS 553
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734047|emb|CBI15294.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/356 (64%), Positives = 270/356 (75%), Gaps = 24/356 (6%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
M LVRI ++ +KK LN FS VAL +AAYLMI+IILENIFTFPLWARI T + LL LL
Sbjct: 192 MCLVRIDERDTQGNKKQLNRFSTVALLVAAYLMIVIILENIFTFPLWARIATLILLLLLL 251
Query: 61 SSPLGIAIKAQREDTTRLSPTF-ATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQ 119
+SPLGIA A ++++ S +++RSPL+ P+ +H
Sbjct: 252 ASPLGIAANALKDESEISSQGLVSSERSPLLRDPKE--------------HH-------- 289
Query: 120 VKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTS 179
A+ D L+DEED+N++Q++ T NFWLLF+AM CGMGSGLAT+NNISQIGESLGY T
Sbjct: 290 -AADEDTPMLQDEEDLNVVQAMRTGNFWLLFIAMACGMGSGLATINNISQIGESLGYTTV 348
Query: 180 AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGN 239
IN+LVSLWSIWNFLGRFG GYVSDI+LHR GW RP + ITLATM++GH+++ASGF GN
Sbjct: 349 EINTLVSLWSIWNFLGRFGAGYVSDILLHRRGWARPLLMVITLATMTIGHVIIASGFAGN 408
Query: 240 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 299
LYVGS+IVGVCYG QWSLMPTIT E+FGVGHMGTIFNTIAIASPVGSY+ SVR+IGYIYD
Sbjct: 409 LYVGSVIVGVCYGSQWSLMPTITSELFGVGHMGTIFNTIAIASPVGSYLLSVRVIGYIYD 468
Query: 300 NVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHS 355
ASG+ NSC+GTHCFMLSFLI+ V G LVA LF RT+RFYK VVLRRL S
Sbjct: 469 KEASGKQNSCSGTHCFMLSFLIIGCVTLFGSLVASALFFRTKRFYKLVVLRRLNLS 524
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508612|ref|XP_003523049.1| PREDICTED: uncharacterized protein LOC100775628 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/357 (57%), Positives = 268/357 (75%), Gaps = 3/357 (0%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
M +RI+ + +D KKHL+ FS V + I AYLM IIIL+N+ + P W R+ F+ L+ LL
Sbjct: 204 MFFLRIYEVHGSDYKKHLDGFSVVTVIIVAYLMFIIILQNLVSLPNWGRMFAFVILMVLL 263
Query: 61 SSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQV 120
++P GIAIKA E++ + S ++ +R + + TTS+ SAS D V YHELP +E QV
Sbjct: 264 ATPFGIAIKAHWEESRKFSQSYTIERGSSTN--KGTTSSSHSASVDQVEYHELPSDEGQV 321
Query: 121 KAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA 180
+ DDK L EE+ N+LQ++CT++FW+LFV M+ G+GSGLAT+NN+SQIG+SLGY
Sbjct: 322 QVTSDDK-LPREEEKNLLQAMCTVDFWMLFVIMISGLGSGLATINNMSQIGQSLGYSAIE 380
Query: 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL 240
IN+LVSLWS+WNFLGRFGGG+VSD ++HR GW RP + +TL M +GH+++ASGF GNL
Sbjct: 381 INNLVSLWSMWNFLGRFGGGHVSDYIMHRKGWPRPLLMTVTLGIMILGHLIIASGFQGNL 440
Query: 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300
Y+G ++VG+CYG WSLMPTIT EIFGV HMGTIFNTIA ASP+GSY+ SVR++GYIYD
Sbjct: 441 YLGPVLVGICYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPLGSYILSVRVVGYIYDK 500
Query: 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHSSR 357
A E +SC G +CFM SF I+A+VAF+ LV LF RTRRFYKQVVLRRL H +R
Sbjct: 501 QADKEDHSCFGINCFMPSFFILAAVAFLAFLVGLALFFRTRRFYKQVVLRRLKHYAR 557
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540871|ref|XP_002511500.1| conserved hypothetical protein [Ricinus communis] gi|223550615|gb|EEF52102.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/356 (65%), Positives = 274/356 (76%), Gaps = 4/356 (1%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
M+LVR + T+S DDKKHLNAFSAVALTIAAYL I II ENIF PLW R++TFL LL L+
Sbjct: 199 MTLVRNYDTSSKDDKKHLNAFSAVALTIAAYLTINIIFENIFILPLWIRLVTFLVLLLLV 258
Query: 61 SSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHEL-PGEESQ 119
SPL IA +A RE + R + +R P T S++ +D Y L E+ +
Sbjct: 259 GSPLAIATRALRESSDRYAQALLEERGY---KPNTMMSSELPTEEDPNDYRALLSNEDLE 315
Query: 120 VKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTS 179
KA D + DEED+N+LQ+V T NFWLLF+AM CG+GSGLAT+NNISQ+G+SLGY
Sbjct: 316 AKATSDHRSSSDEEDLNLLQAVSTGNFWLLFIAMFCGLGSGLATINNISQVGQSLGYTAI 375
Query: 180 AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGN 239
+ NSLVSL SIWNFLGRFG G++SDI LHR GW RP F+AITLAT+++GHIV+ASGFP N
Sbjct: 376 SRNSLVSLLSIWNFLGRFGAGFISDIFLHRGGWARPLFVAITLATLAIGHIVIASGFPYN 435
Query: 240 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 299
LY+GS++VG+ YG QWSLMPTIT EIFGVGHMGTIFNTIAIASP+GSY+ SVR+IGYIYD
Sbjct: 436 LYLGSVLVGISYGSQWSLMPTITSEIFGVGHMGTIFNTIAIASPLGSYIFSVRVIGYIYD 495
Query: 300 NVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHS 355
ASGE N C GT CFMLSFLIMASVAF G LVA +LF RTRRFY+ VVLRR+ HS
Sbjct: 496 KAASGEDNLCYGTRCFMLSFLIMASVAFFGVLVALVLFFRTRRFYQAVVLRRVHHS 551
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519027|ref|XP_003528176.1| PREDICTED: uncharacterized protein LOC100799596 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/357 (57%), Positives = 264/357 (73%), Gaps = 3/357 (0%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
M L+RI+ + +D KKHL+ FS V + I AYLM IIIL+N+ + P W R+ F+ L+ LL
Sbjct: 204 MFLLRIYEVHGSDYKKHLDGFSVVTVIIVAYLMFIIILQNLVSLPYWGRMFAFVILMVLL 263
Query: 61 SSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQV 120
++P GIAIKA E++ + + ++ RS + + TTS+ +SAS D V YHELP +E Q
Sbjct: 264 ATPFGIAIKAHWEESRKFAQSYTIGRSSSTN--KGTTSSSYSASVDQVEYHELPSDEGQE 321
Query: 121 KAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA 180
+ DDK L EE+ N+ Q++CT++FW+LFV M+ G+GSGLAT+NN+SQIG+SLGY T
Sbjct: 322 QVTSDDK-LPREEEKNLWQAMCTVDFWMLFVIMISGLGSGLATINNMSQIGQSLGYSTIE 380
Query: 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL 240
IN+LVSLWS+WNFLGRFGGG+VSD ++HR GW RP + TL M +GH+++ASGF GNL
Sbjct: 381 INNLVSLWSMWNFLGRFGGGHVSDYIMHRKGWPRPLLMTATLGIMILGHLIIASGFRGNL 440
Query: 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300
Y+G ++VG+CYG WSLMPTIT EIFGV HMGTIFNTIA ASP+GSY+ SVR++GYIYD
Sbjct: 441 YLGPVLVGICYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPLGSYILSVRVVGYIYDK 500
Query: 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHSSR 357
A E N C G CFM SF I+A VA + LV LF RTRRFYKQVVLRRL H +R
Sbjct: 501 QADKEDNLCFGIDCFMPSFFILAGVALLAFLVGLALFFRTRRFYKQVVLRRLKHYAR 557
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|29824365|gb|AAP04143.1| unknown protein [Arabidopsis thaliana] gi|110739083|dbj|BAF01458.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/354 (60%), Positives = 264/354 (74%), Gaps = 21/354 (5%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
M LVRI+ T+ ADDKKHLN SAV+L IAAYLMIIIIL+N F WA I+T + LL +L
Sbjct: 200 MPLVRIYETSVADDKKHLNGLSAVSLIIAAYLMIIIILKNTFGLSSWANIVTLVCLLVML 259
Query: 61 SSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQV 120
+ PL IA +AQR+ + P SPL+ P+ TTS S+ DS +V
Sbjct: 260 ALPLLIARRAQRDGMEKTVPH---DYSPLISSPKATTSGNQSSEGDS-----------KV 305
Query: 121 KAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA 180
+A ED+N+LQ++ L+FWLLF+AM+CGMGSGL+T+NNI QIGESL Y +
Sbjct: 306 EAGLS-------EDLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVE 358
Query: 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL 240
INSLVSLWSIWNFLGRFG GY SD +LH+ GW RP +A TL TMS+GH+++ASGF GNL
Sbjct: 359 INSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNL 418
Query: 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300
YVGS+IVGVCYG QWSLMPTIT E+FG+ HMGTIFNTI++ASP+GSY+ SVR+IGYIYD
Sbjct: 419 YVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDK 478
Query: 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGH 354
ASGEGN+C G+HCF LSF+IMASVAF G LVA +LF RT+ Y+Q++++RL H
Sbjct: 479 TASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221382|ref|NP_177616.1| nodulin-like and major facilitator domain-containing protein [Arabidopsis thaliana] gi|5882744|gb|AAD55297.1|AC008263_28 Strong similarity to gb|AF031243 nodule-specific protein (Nlj70) from Lotus japonicus and is a member of the PF|00083 Sugar (and other) transporter family. EST gb|Z37715 comes from this gene [Arabidopsis thaliana] gi|332197510|gb|AEE35631.1| nodulin-like and major facilitator domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/354 (59%), Positives = 264/354 (74%), Gaps = 21/354 (5%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
M LVRI+ T+ ADDKKHLN SAV+L IAAYLMIIIIL+N F WA I+T + LL +L
Sbjct: 200 MPLVRIYETSVADDKKHLNGLSAVSLIIAAYLMIIIILKNTFGLSSWANIVTLVCLLVML 259
Query: 61 SSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQV 120
+ PL IA +AQR+ + P SPL+ P+ TTS S+ DS +V
Sbjct: 260 ALPLLIARRAQRDGMEKTVPH---DYSPLISSPKATTSGNQSSEGDS-----------KV 305
Query: 121 KAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA 180
+A E++N+LQ++ L+FWLLF+AM+CGMGSGL+T+NNI QIGESL Y +
Sbjct: 306 EAGLS-------ENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVE 358
Query: 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL 240
INSLVSLWSIWNFLGRFG GY SD +LH+ GW RP +A TL TMS+GH+++ASGF GNL
Sbjct: 359 INSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNL 418
Query: 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300
YVGS+IVGVCYG QWSLMPTIT E+FG+ HMGTIFNTI++ASP+GSY+ SVR+IGYIYD
Sbjct: 419 YVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDK 478
Query: 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGH 354
ASGEGN+C G+HCF LSF+IMASVAF G LVA +LF RT+ Y+Q++++RL H
Sbjct: 479 TASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456622|ref|XP_002266496.1| PREDICTED: uncharacterized protein LOC100250053 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/357 (57%), Positives = 249/357 (69%), Gaps = 19/357 (5%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
M LVRI+ T D+KKHLN FS VAL +A YLM +IILENI T AR+ T + LL LL
Sbjct: 199 MCLVRIYNTKEGDEKKHLNGFSLVALVVAGYLMALIILENILTLQFPARLFTLVLLLLLL 258
Query: 61 SSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQV 120
+ PL + IKAQ+ + S TF +++ L+D P+ + K QD YH
Sbjct: 259 AMPLAVTIKAQQSNFDGTSQTFLIEKNQLIDDPKQLDAEKIGKGQDPAGYHL-------- 310
Query: 121 KAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA 180
E++N+LQ++ T NFW LF+AM CGMGSGLATVNNI QIG + GY +
Sbjct: 311 -----------GENLNLLQAMGTCNFWCLFLAMACGMGSGLATVNNIGQIGGAFGYKSFE 359
Query: 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL 240
++LVSLWSIWNFLGRFG GYVSD LH GW RP F+ ITLATMS+GH V+ASG PG L
Sbjct: 360 TSTLVSLWSIWNFLGRFGTGYVSDYFLHTRGWARPVFMVITLATMSIGHFVIASGMPGAL 419
Query: 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300
Y GS++VGV YG QWSLMPTIT EIFGV H+GTIFNTI +ASPVGSY+ SVR++GYIYD
Sbjct: 420 YAGSVLVGVSYGSQWSLMPTITSEIFGVQHLGTIFNTITMASPVGSYIFSVRVVGYIYDK 479
Query: 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHSSR 357
AS +GN C GTHCFM+SFLIMAS +GC VA +LF+RT+ FY QVVLRRL H R
Sbjct: 480 EASADGNKCTGTHCFMVSFLIMASATLLGCFVALILFLRTKSFYNQVVLRRLQHPGR 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477604|ref|XP_004155069.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230019 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 260/356 (73%), Gaps = 9/356 (2%)
Query: 1 MSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLL 60
M VRI T S+++ KHLN+ SA+A+ +A YLM++IIL N F+ W R TF LL LL
Sbjct: 197 MWFVRIDKTESSNEMKHLNSLSALAVIVAFYLMVVIILNNAFSLSSWTRYFTFSILLILL 256
Query: 61 SSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQV 120
++PLGIAI AQ+ED S + ++S +V+ PE+ + +DSV YHELP EE+Q+
Sbjct: 257 AAPLGIAINAQKEDFRGSSSSLIAEKSHVVNKPESIDA------EDSVEYHELPREENQI 310
Query: 121 KAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA 180
+ + MN+L+++ T+NFWLLF+AM+CGMGSGLAT+NN+SQ+G+SLGY +
Sbjct: 311 MVV---SNTRAPQTMNVLEAIRTINFWLLFLAMVCGMGSGLATINNMSQLGQSLGYTETE 367
Query: 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL 240
+ VSLWSIWNFLGRFG GY SD + H GW RP +AITL MS GHIV+ASGF GNL
Sbjct: 368 TKTFVSLWSIWNFLGRFGAGYTSDFLFHTYGWARPLLMAITLLIMSGGHIVIASGFSGNL 427
Query: 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300
YVGSI+VG+CYG QWSLMPTIT EIFG+ HMGTIFNTIAIASP+GSY+ SVR+IGYIYD
Sbjct: 428 YVGSILVGICYGSQWSLMPTITSEIFGLEHMGTIFNTIAIASPLGSYIFSVRVIGYIYDR 487
Query: 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHSS 356
A+ E +C+G HCF++SF +MA VAF+G LVA LF RTRRFY+ RR+ S
Sbjct: 488 EAAREHGACSGIHCFVVSFFVMAIVAFLGFLVAAALFFRTRRFYQLASQRRVNRVS 543
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.614 | 0.412 | 0.695 | 1.3e-107 | |
| TAIR|locus:2011241 | 526 | AT1G18940 [Arabidopsis thalian | 0.594 | 0.404 | 0.652 | 9.7e-99 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.608 | 0.415 | 0.669 | 2.9e-97 | |
| TAIR|locus:1005716659 | 523 | AT2G34355 [Arabidopsis thalian | 0.603 | 0.413 | 0.657 | 6.2e-91 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.600 | 0.357 | 0.414 | 4.7e-50 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.575 | 0.355 | 0.385 | 2.6e-45 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.581 | 0.380 | 0.404 | 6.7e-45 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.918 | 0.570 | 0.326 | 9.1e-45 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.575 | 0.352 | 0.366 | 6.7e-43 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.924 | 0.583 | 0.310 | 2.5e-42 |
| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 153/220 (69%), Positives = 188/220 (85%)
Query: 135 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFL 194
+N+LQ++ L+FWLLF+AM+CGMGSGL+T+NNI QIGESL Y + INSLVSLWSIWNFL
Sbjct: 313 LNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWNFL 372
Query: 195 GRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQ 254
GRFG GY SD +LH+ GW RP +A TL TMS+GH+++ASGF GNLYVGS+IVGVCYG Q
Sbjct: 373 GRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGSQ 432
Query: 255 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 314
WSLMPTIT E+FG+ HMGTIFNTI++ASP+GSY+ SVR+IGYIYD ASGEGN+C G+HC
Sbjct: 433 WSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGEGNTCYGSHC 492
Query: 315 FMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGH 354
F LSF+IMASVAF G LVA +LF RT+ Y+Q++++RL H
Sbjct: 493 FRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532
|
|
| TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
Identities = 139/213 (65%), Positives = 181/213 (84%)
Query: 135 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFL 194
+N+LQ++C ++FWLLF+AM+CGMGSG++T+NNI QIGESL Y + INSL++LW+IWNF+
Sbjct: 306 LNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALWNIWNFI 365
Query: 195 GRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQ 254
GRFGGGYVSD +LHR GW RP +A TL TM++GH+++ASGF GNLY GSIIVG+CYG Q
Sbjct: 366 GRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQGNLYPGSIIVGICYGSQ 425
Query: 255 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 314
WSLMPTIT E+FGV HMGTI+NTI+IASP+GSY+ SVR+IGYIYD GEGN+C G HC
Sbjct: 426 WSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFSVRLIGYIYDRTIIGEGNTCYGPHC 485
Query: 315 FMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 347
F L+++++ASVAF+G LV+ +L RT+ Y+Q+
Sbjct: 486 FRLAYVVIASVAFLGFLVSCVLVFRTKTIYRQI 518
|
|
| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
Identities = 146/218 (66%), Positives = 180/218 (82%)
Query: 135 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFL 194
MN+L+++CT NFWLLFVAM+CGMGSGLAT+NNI Q+GESL Y T +NSLVSLWSIWNFL
Sbjct: 306 MNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSLWSIWNFL 365
Query: 195 GRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQ 254
GRFG GY+SD LH GW RP F+AITL M++GHIV+ASG G+LY+GS++VG+ YG Q
Sbjct: 366 GRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSLYIGSLLVGLAYGSQ 425
Query: 255 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 314
WSLMPTIT EIFGV HMGTIF TI+IASPVGSY SV++IGY+YD VAS + +SC G HC
Sbjct: 426 WSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDKVASEDDHSCYGNHC 485
Query: 315 FMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRL 352
F SFLIMA++A +G LVA +L +RT++FY +V +R+
Sbjct: 486 FRTSFLIMAAMALLGSLVALVLLLRTKKFYATLVAKRI 523
|
|
| TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 142/216 (65%), Positives = 174/216 (80%)
Query: 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLG 195
NIL+++ T+NFWLLF+AMLCGMGSG ATVNN+ QIGESL Y + +NSLVSLWSIWNFLG
Sbjct: 305 NILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSVQLNSLVSLWSIWNFLG 364
Query: 196 RFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQW 255
RFG GYVSD LH+ W RP F+AITL M++GHI+VASG G+LY GS+++G+ YG QW
Sbjct: 365 RFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGSLYAGSVLIGMAYGSQW 424
Query: 256 SLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF 315
SLMPTIT EIFG+ HMGTI+ TI+IA P+GSY+ SV++IGY YD VAS + NSC G+ CF
Sbjct: 425 SLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIGYFYDKVASEDDNSCFGSQCF 484
Query: 316 MLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRR 351
SF+IMASVA G LVA +LF RT +FYK +V +R
Sbjct: 485 RTSFMIMASVALFGSLVASVLFFRTHKFYKNLVAKR 520
|
|
| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 94/227 (41%), Positives = 146/227 (64%)
Query: 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 196
ILQ++ +++ +LF+A +CG+G L ++N+ QIG SLGYP ++++ VSL SIWN+ GR
Sbjct: 336 ILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIWNYYGR 395
Query: 197 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWS 256
G VS+I L + + RP + + L GH+++A PG LYV S+I+G C+G QW
Sbjct: 396 VVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCFGAQWP 455
Query: 257 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS------------G 304
L+ I EIFG+ + T++N ++ASP+GSY+ +VR+ GY+YD A G
Sbjct: 456 LLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGKTRVEG 515
Query: 305 EGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRR 351
+ +C GT CF LSF+I+A+V G LV+ +L IRT++FYK + ++
Sbjct: 516 QDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIYKK 562
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 84/218 (38%), Positives = 134/218 (61%)
Query: 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 196
+ Q++ +FWL+F ++L G GSGL ++N+ Q+ +SLGY + + LVS+ SIWNFLGR
Sbjct: 355 LTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--LVSMISIWNFLGR 412
Query: 197 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWS 256
GGGY S++V+ + RP +A+ MSVGHI A G+PG +Y+G++++G+ YG W+
Sbjct: 413 IGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWA 472
Query: 257 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNS-------- 308
++P E+FG+ G ++N + +A+P GS V S I IYD A + +
Sbjct: 473 IVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFDPDDA 532
Query: 309 --CNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFY 344
CNG+ CF L+ LIM+ + C+++ +L RT+ Y
Sbjct: 533 LRCNGSICFFLTSLIMSGFCIIACMLSMILVRRTKSVY 570
|
|
| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 87/215 (40%), Positives = 143/215 (66%)
Query: 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 196
I+++V T++FW+LFV+ LCG+G+GLA +NN+ QIG +LGY +I VS+ SIW F GR
Sbjct: 321 IMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTNVSI--FVSMTSIWGFFGR 378
Query: 197 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWS 256
G +S+ L + G RP + A + M+VG+I++A P +LY+GS++VGVCYG + +
Sbjct: 379 ILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMALAVPNSLYIGSMVVGVCYGVRLA 438
Query: 257 L-MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS---GEGNSCNGT 312
+ +PT + E+FG+ + G I+N + + P+GS++ S + G++YD A+ G GN+C G
Sbjct: 439 ITVPTAS-ELFGLKYYGLIYNILVLNLPLGSFLFSGLLAGFLYDAEATPTPGGGNTCVGA 497
Query: 313 HCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 347
HC+ L F++MA + +G + +L RT+ Y ++
Sbjct: 498 HCYRLIFIVMALASVIGVGLDLVLAYRTKEIYAKI 532
|
|
| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 114/349 (32%), Positives = 179/349 (51%)
Query: 21 FSAVALTIAAYLMIIIILENIFTFPLWARIITXXXXXXXXSSPLGIAIKAQREDTTRLSP 80
F +++ +A +LM + I E F A + PL +++K + E +
Sbjct: 215 FLYISIFLALFLMAMNIAEKQVHFSKAAYAASATICCALLFVPLTVSVKQELEVWNMMKL 274
Query: 81 TFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVXXXXXXXXXX--XXXXMNIL 138
V+ P+ + QD A ++ GEE + IL
Sbjct: 275 PIEEPSEVKVEKPKK----ELDLDQDKAA--KVNGEEKETKSCFSTVFSPPPRGEDYTIL 328
Query: 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFG 198
Q++ + + +LFVA CG+GS L V+N+ QIGESLGYP ++S VSL SIWN+ GR
Sbjct: 329 QALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIWNYFGRVF 388
Query: 199 GGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLM 258
G+VS+ +L + RP + + L GH+++A PG++Y+ SI++G +G Q L+
Sbjct: 389 SGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSFGAQLPLL 448
Query: 259 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA----SGEGNS------ 308
I E+FG+ + T+FN +ASP+GSY+ +VR+ G +YD A + G +
Sbjct: 449 FAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTARGLTRKDVKD 508
Query: 309 --CNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRRLGHS 355
C G+ C+ L FLI+A+V F G LV+ L IRTR FYK + ++ S
Sbjct: 509 LTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIYKKFRES 557
|
|
| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 80/218 (36%), Positives = 131/218 (60%)
Query: 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 196
+ Q++ +FWL+F ++L G GSGL ++N+ Q+ +SLGY + + VS+ SIWNFLGR
Sbjct: 360 LTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--FVSMISIWNFLGR 417
Query: 197 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWS 256
GGGY S++++ + RP IA+ MSVGHI A G+PG +++G++++G+ YG W+
Sbjct: 418 IGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYGAHWA 477
Query: 257 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS--GEGN------- 307
++P E+FG+ G ++N + +A+P GS V S I IYD A +G+
Sbjct: 478 IVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQGSLFNPDDV 537
Query: 308 -SCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFY 344
C G+ C+ L+ LIM+ + ++ +L RT+ Y
Sbjct: 538 LRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVY 575
|
|
| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 108/348 (31%), Positives = 181/348 (52%)
Query: 13 DDKKHLNAFSAVALTIAAYLM---IIIILENIFTFPLWARIITXXXXXXXXSSPLGIAIK 69
++ K+ F+ VA+ +A YL II I F+ + ++ I K
Sbjct: 210 EESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLASPVAVPFHAFIRSK 269
Query: 70 AQREDTT--RLSPTFATQRSPLVDCPETTTSTKFSASQD-SVAYHELPGEESQ---VXXX 123
E R+ S ++ ET +A + + L EE +
Sbjct: 270 VHDEQDVEGRIDEPLLRSGSE-IEVEETIVGAAAAADNELPPSLKPLSNEEEENHGTIVT 328
Query: 124 XXXXXXXXXXXMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINS 183
I++++ T++FW+LFV+ LCG+G+GLA +NN+ QIG +LGY +I
Sbjct: 329 TEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTDVSI-- 386
Query: 184 LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVG 243
VS+ SIW F GR G +S+ + + G RP + A M+VG++++A PG+LY+G
Sbjct: 387 FVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMALALPGSLYIG 446
Query: 244 SIIVGVCYGCQWSL-MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302
S++VGVCYG + ++ +PT + E+FG+ + G I+N + + P+GS++ S + G +YD A
Sbjct: 447 SMVVGVCYGVRLAITVPTAS-ELFGLKYYGLIYNILILNMPLGSFLFSGLLAGLLYDAEA 505
Query: 303 S---GEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 347
+ G GN+C G HCF + F++MA + +G + LL RT+ Y ++
Sbjct: 506 TPTPGGGNTCVGAHCFRIVFIVMAFASIIGVGLDLLLAYRTKGIYAKI 553
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 358 | |||
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 7e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-04 | |
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 0.003 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 7e-11
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 13/166 (7%)
Query: 132 EEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIW 191
+D + + + T FW+L+++ SGL + G+SLG + VS+ SI+
Sbjct: 193 VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIF 252
Query: 192 NFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGN---LYVGSIIVG 248
N GR G +SD R ++I +VG + N +V
Sbjct: 253 NGGGRPFLGALSD------KIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306
Query: 249 VCYGCQWSLMPTITYEIFGVGHM----GTIFNTIAIASPVGSYVCS 290
+G SL P++ +IFG + G ++ A+A G + S
Sbjct: 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS 352
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 37/193 (19%), Positives = 69/193 (35%), Gaps = 18/193 (9%)
Query: 146 FWLLFVAMLCGMGSGLATVNNISQI-GESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSD 204
LL +A + + E LG + L+SL+ + LG GG +SD
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 205 IVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYE 264
+ R + L + ++ + L V +++G G + + T+ E
Sbjct: 237 RLGRRRLLLLIGLLLAALGLL----LLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292
Query: 265 IFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMAS 324
+ GT +G + + + G + D T + FLI+A+
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPL-LAGLLLD------------TGGYGGVFLILAA 339
Query: 325 VAFVGCLVAFLLF 337
+A + L+ LL
Sbjct: 340 LALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 40/209 (19%), Positives = 77/209 (36%), Gaps = 18/209 (8%)
Query: 148 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVL 207
L A L G+G L + E LG + I L++ +S+ L + G +SD
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 208 HRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG 267
R R I + L + + ++ AS L V ++ G+ G + + + F
Sbjct: 61 RR----RVLLIGLLLFALGLLLLLFASSLWL-LLVLRVLQGLGGGALFPAAAALIADWFP 115
Query: 268 VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAF 327
G ++ +G+ + + + G + + +FLI+A +A
Sbjct: 116 PEERGRALGLLSAGFGLGAALGPL-LGGLLASLFG------------WRAAFLILAILAL 162
Query: 328 VGCLVAFLLFIRTRRFYKQVVLRRLGHSS 356
+ ++A LL R K+ +
Sbjct: 163 LAAVLAALLLPRPPPESKRPKPAEEAPAP 191
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%)
Query: 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI 205
L L G+ GL + + + E LG S +VS +S+ LG GY+SD
Sbjct: 2 LLLFLGFFLSGLDRGLLSPA-LPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 206 VLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYE 264
R + + L ++G +++A + L VG ++G+ G + + E
Sbjct: 61 FGRRR------VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114
Query: 265 IFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMAS 324
F G + +G+ + + G + +++ + FLI+A
Sbjct: 115 WFPPKERGRALGLFSAGFGLGA-LLGPLLGGLLAESLG------------WRWLFLILAI 161
Query: 325 VAFVGCLVAFLLFIRT 340
+ + L+ L
Sbjct: 162 LGLLLALLLLFLLRLL 177
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 6/152 (3%)
Query: 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGR 196
+ + L +A+L + A + + E LG L+ L + +GR
Sbjct: 195 AWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGR 254
Query: 197 FGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL--YVGSIIVGVCYGCQ 254
G +SD R+G R +A+ L ++ + + S +L V +++G G
Sbjct: 255 LLLGRLSD----RLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLV 310
Query: 255 WSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 286
+ + + ++ GT A +G
Sbjct: 311 FPALNALVSDLAPKEERGTASGLYNTAGSLGG 342
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 31/203 (15%), Positives = 69/203 (33%), Gaps = 5/203 (2%)
Query: 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLG 195
++L + + + LL L G+G G + I E +P + L+S LG
Sbjct: 78 SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEW--FPPKERGRALGLFSAGFGLG 135
Query: 196 RFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQW 255
G + ++ +GW I L + ++ L + ++ + +
Sbjct: 136 ALLGPLLGGLLAESLGWRWLFLILAILGLLL---ALLLLFLLRLLLLLALAFFLLSFGYY 192
Query: 256 SLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF 315
L+ + + V + + ++ + + G + D + G
Sbjct: 193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLA 252
Query: 316 MLSFLIMASVAFVGCLVAFLLFI 338
L L++A + L+ LL +
Sbjct: 253 ALGLLLLALAPSLALLLVALLLL 275
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 1 MSLVRIHG---TNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLL 57
+ +R + F+ +++ +A YL+ + IL F ++
Sbjct: 178 LYFIRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMV 237
Query: 58 FLLSSPLGIAI 68
LL PL + I
Sbjct: 238 LLLLVPLAVPI 248
|
This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.81 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.8 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.78 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.78 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.77 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.76 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.76 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.75 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.75 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.75 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.74 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.74 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.73 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.73 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.73 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.72 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.71 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.7 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.7 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.7 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.7 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.69 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.69 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.68 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.68 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.68 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.68 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.68 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.68 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.67 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.67 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.67 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.67 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.66 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.66 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.66 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.66 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.66 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.65 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.65 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.65 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.65 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.65 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.65 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.65 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.64 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.64 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.64 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.63 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.63 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.63 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.63 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.62 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.62 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.62 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.62 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.62 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.61 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.61 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.61 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.61 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.6 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.6 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.6 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.6 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.6 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.6 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.6 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.6 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.6 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.6 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.59 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.59 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.59 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.59 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.59 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.59 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.58 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.58 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.58 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.58 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.58 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.58 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.58 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.58 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.58 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.58 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.58 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.57 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.57 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.57 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.57 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.56 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.56 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.55 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.55 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.55 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.55 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.55 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.55 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.55 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.54 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.54 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.54 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.54 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.54 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.54 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.54 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.53 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.53 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.52 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.51 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.51 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.49 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.49 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.49 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.49 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.49 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.48 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.48 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.46 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.46 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.46 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.46 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.46 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.46 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.45 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.43 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.43 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.42 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.42 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.42 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.41 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.41 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.41 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.4 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.4 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.4 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.4 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.39 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.39 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.38 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.38 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.38 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.38 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.37 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.37 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.37 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.37 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.36 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.36 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.36 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.36 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.36 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.35 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.35 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.35 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.35 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.35 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.35 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.35 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.34 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.33 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.33 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.33 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.32 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.31 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.3 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.28 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.28 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.27 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.26 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.26 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.25 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.25 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.25 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.23 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.23 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.23 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.23 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.23 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.21 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.21 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.2 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.2 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.19 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.18 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.15 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.13 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.12 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.06 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.03 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.02 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.98 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.91 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.89 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.87 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.85 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.85 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.81 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.8 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.79 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.79 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.79 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.76 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.76 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.76 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.74 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.74 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.73 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.72 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.7 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.65 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.61 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.59 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.59 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.59 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.58 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.57 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.53 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.52 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.51 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.48 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.32 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.29 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.24 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.22 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.19 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.15 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.06 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.05 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.0 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.88 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.8 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.79 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.76 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.63 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.61 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.57 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.52 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.46 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.45 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.45 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.43 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.4 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.29 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.25 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.22 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.21 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.05 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.95 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.94 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.92 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.92 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.53 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.47 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 96.43 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.2 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.13 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 95.55 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.38 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.28 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 95.07 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.77 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 94.17 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.97 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.83 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.11 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 92.97 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.06 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.61 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 87.6 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 85.31 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 80.73 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=257.44 Aligned_cols=312 Identities=13% Similarity=0.197 Sum_probs=236.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHH-HHHhhh-hHHhhhhhhhccccCCCCcccCCCCCCCCCC
Q 018271 17 HLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLL-FLLSSP-LGIAIKAQREDTTRLSPTFATQRSPLVDCPE 94 (358)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (358)
+|+.++++++.+++|++++++++.+.+.++..+...+++++ ++++.| +.+|.+. ++..++.+ +.++ +
T Consensus 244 ~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~--~~~~~~~~----~~~~-----~ 312 (591)
T PTZ00207 244 RFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT--FDGKRPHD----DSDG-----K 312 (591)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH--hccCCcCC----Cccc-----c
Confidence 89999999999999999999999999888888887777666 777888 6677654 11111100 0000 0
Q ss_pred CcccccccCCCCcccccCCCCCccchhhhhccccccccccccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc
Q 018271 95 TTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL 174 (358)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (358)
..+.. +.+++ . ..+++++.+...+...|..+ .++++.+++.++|++++.++|..+....+++|+.++.+++
T Consensus 313 ~~~~~----~~~~~-~--~~~~~~~~~~~~~~~~P~~~--~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl 383 (591)
T PTZ00207 313 AKEHV----EAGEE-V--SAAEDKVVETDVDYIAPQFQ--ETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTAL 383 (591)
T ss_pred ccccc----ccccc-c--cccccccccccccCCCCCCc--chHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHh
Confidence 00000 00000 0 00000000000000112222 2899999999999999999999999999999999999999
Q ss_pred -CCCchh--hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcC----CchHHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHH
Q 018271 175 -GYPTSA--INSLVSLWSIWNFLGRFGGGYVSDIVLHRMG----WERPSFIAITLATMSVGHIVVASGFP-GNLYVGSII 246 (358)
Q Consensus 175 -G~s~~~--a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~----~gr~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~l 246 (358)
|.+.++ ..+++++.++++.+||+.+|.++ .+-+|+. +.|...+.+..+ ++++.++++...+ ..+++..++
T Consensus 384 ~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~l 461 (591)
T PTZ00207 384 AGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFI 461 (591)
T ss_pred cCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHH
Confidence 884333 33389999999999999999998 5555543 566777777767 6666666664444 789999999
Q ss_pred HHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCC-CCccccccchHHHHHHHHHH
Q 018271 247 VGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE-GNSCNGTHCFMLSFLIMASV 325 (358)
Q Consensus 247 ~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~-~~~~~g~~~~~~~f~~~~~~ 325 (358)
.|+++|..+++..++++|+|+ ++.|+.+++..++..+|+++++..++|.+||+...++ +..|+|.+||+.+|.+++++
T Consensus 462 vg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~ 540 (591)
T PTZ00207 462 AAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGL 540 (591)
T ss_pred HHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999987654 46899999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhh
Q 018271 326 AFVGCLVAFLLFIRTRRFYKQVVLRR 351 (358)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (358)
+++++++..+++.|+|+.+++...+|
T Consensus 541 ~~~g~~~s~~l~~R~r~~y~~~~~~~ 566 (591)
T PTZ00207 541 SFLAFITSTYVHLQYRRLCLKALEER 566 (591)
T ss_pred HHHHHHHHhheeeehHHHHHHHHHHH
Confidence 99999999999999998877655443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-17 Score=158.85 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=139.6
Q ss_pred HhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
..+|++.+|.+++..++.....+....++|.+.++ .|++..+++.+..+..++..++.++.|+++||++++ .|+..
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~---r~~~~ 324 (452)
T PRK11273 248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG---NRGAT 324 (452)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CcchH
Confidence 46788999998888887777777888899999986 599988888888899999999999999999999543 12222
Q ss_pred HHHHHHHHHHHHHHHH-h--cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHH
Q 018271 218 IAITLATMSVGHIVVA-S--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 294 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~-~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~ 294 (358)
......+..++.+++. . .+....++..++.|.+..+.......+..|.+|++.+|++.|+.+....+|+.+.+|.+.
T Consensus 325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~ 404 (452)
T PRK11273 325 GVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 404 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence 2222222222222222 1 222223334444554433333334456789999999999999998888887655689999
Q ss_pred HHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 018271 295 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVLRR 351 (358)
Q Consensus 295 g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (358)
|++.|+.| |+..|++++++++++++...++.+.++|+.++..+++
T Consensus 405 g~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (452)
T PRK11273 405 GYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQKR 449 (452)
T ss_pred HHHHHHhc------------chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhh
Confidence 99999988 9999999999888888777666555555444444443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=173.10 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHH
Q 018271 185 VSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITY 263 (358)
Q Consensus 185 ~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~ 263 (358)
..+..++.++|.++.|+++||+ |||.++.+++++.+++.+++. ..+...+++..++.|++.++.++..+++++
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~------GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI------GRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999 777888888888888777665 444455566667778877788888999999
Q ss_pred HhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 264 EIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 264 e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
|+||++.|++++|+.+..+++|+ +++|+++|.+.+.. ...+|++.+++.++++++.+++ +++++
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGa-iigp~i~g~L~~~~-------------~~~pf~i~a~~lll~~ll~~~L-PET~~ 738 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAA-VLGILIFGSFVGIT-------------KAAPILFASAALACGGLLALKL-PDTRG 738 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHhC-CCCcc
Confidence 99999999999999999999999 58999999888752 5677888887777776655443 55544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=153.91 Aligned_cols=178 Identities=14% Similarity=0.075 Sum_probs=128.1
Q ss_pred hhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 140 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
.++++.+|.+.+..++.....+.+.+|+|.+++ ++|++..+++...+.+.+++.+|+++.|+++||+.++ +|+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~---~r~~~~ 315 (434)
T PRK11663 239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG---NRGPMN 315 (434)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC---CccHHH
Confidence 567889998888777776666778889999985 5699999999999999999999999999999998543 232222
Q ss_pred H---HHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 219 A---ITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 219 ~---~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
. ++.....+...++...+........++.|++..+..........|.+|++.+|++.|+.+....+|.. ++|++.|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~p~~~g 394 (434)
T PRK11663 316 LIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAA-LSGYPLA 394 (434)
T ss_pred HHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHH-HhcccHH
Confidence 1 12221221111111222222223334444433333334456678999999999999999999999994 8999999
Q ss_pred HHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 296 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 296 ~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
++.|+.| |+..|++.+++++++++..
T Consensus 395 ~l~~~~g------------~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 395 KVLEIWH------------WTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHhcc------------cHHHHHHHHHHHHHHHHHH
Confidence 9999987 9999999998888876554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-18 Score=154.02 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=151.2
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.+.+++|+..|.+.+++++....-+++..|.|.|+.+ .|+|..++++..+++-.+++.|.+++||+|||+.+ |||
T Consensus 245 ~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfk----grR 320 (448)
T COG2271 245 VKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFK----GRR 320 (448)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc----ccc
Confidence 4667899999999999999999999999999988875 59999999999999999999999999999999854 444
Q ss_pred -HHHHHHHHHHHHHHHHHH-hcC--chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhh-HHHHHh
Q 018271 216 -SFIAITLATMSVGHIVVA-SGF--PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSYVCS 290 (358)
Q Consensus 216 -~~~~~~~~~~~~~~~l~~-~~~--~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~i-g~~i~g 290 (358)
+.-++.++...++.+++. .++ +....+..++.|+...+.+-+......|..|++..|++.|+.+.++.+ |+ .++
T Consensus 321 ~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga-~~a 399 (448)
T COG2271 321 GPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA-ALA 399 (448)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH-Hhc
Confidence 444444555555555554 332 244566778888887777777777888999999999999999999999 66 578
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
....|++.|.+| |...|+++.+.++++.++...+...
T Consensus 400 ~~~~g~i~d~~g------------W~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 400 GLPLGYIADTWG------------WDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred CCcceeeEecCC------------CcchHHHHHHHHHHHHHHHHHHHhh
Confidence 888999989877 9999999998888887766555443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-17 Score=157.28 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=118.4
Q ss_pred HHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHH-HHHH
Q 018271 154 LCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSV-GHIV 231 (358)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~-~~~l 231 (358)
++....++.+..|+|++++ .+|++..+..+..+...++..++.++.|+++||+ +||+.+..+.++..+ +..+
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------grr~~~~~~~~~~~~~~~~~ 333 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF------GRRPFVILGSVALFVLAIPA 333 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHH
Confidence 4445666778889999886 5699988888888888899999999999999999 555555555433222 2221
Q ss_pred H--H-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCc
Q 018271 232 V--A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNS 308 (358)
Q Consensus 232 ~--~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~ 308 (358)
+ . ..+...+++..++.|++.+...+....+++|++|++.||+++|+.+..+.+++. ++|.+.|++.+..++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~-~~p~i~g~l~~~~~~----- 407 (490)
T PRK10642 334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAG-LTPTLAAWLVESTQN----- 407 (490)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-----
Confidence 1 1 222334555667777777766677788899999999999999986544556663 689999999887654
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018271 309 CNGTHCFMLSFLIMASVAFVGCLVAFLLFIRT 340 (358)
Q Consensus 309 ~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 340 (358)
|+..+++..++++++.+..++ .+|+
T Consensus 408 ------~~~~~~~~~~~~~i~~~~~~~-~pes 432 (490)
T PRK10642 408 ------LMMPAYYLMVVAVIGLITGVT-MKET 432 (490)
T ss_pred ------chHHHHHHHHHHHHHHHHHHH-hccc
Confidence 677766666666666655443 3444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-16 Score=151.12 Aligned_cols=192 Identities=14% Similarity=0.055 Sum_probs=133.6
Q ss_pred HhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
+.++++.+|.+.+..++.....+++..|+|.|++ ++|++..++++..+...+++.+|+++.|+++||+++| ..
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r------~~ 326 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR------RA 326 (467)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------ch
Confidence 3688999999999888888887888899998886 4799999999999999999999999999999999543 22
Q ss_pred HHHHHHHHHHHH--HHHHh-cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhh-HHHHHhHHH
Q 018271 218 IAITLATMSVGH--IVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSYVCSVRI 293 (358)
Q Consensus 218 ~~~~~~~~~~~~--~l~~~-~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~i-g~~i~gp~i 293 (358)
+.....+..+.. +.+.. .+.....+..++.|++..+..........|.+|++.+|++.|+.+..+.+ |+ .++|.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~-~~~~~~ 405 (467)
T PRK09556 327 LVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGD-SFAKVG 405 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhH-HHHhhh
Confidence 222222222221 22222 23333445556666544333333446677999999999999999999887 65 479999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
.|++.|.........-+...+|+..|++++++++++++..+++.
T Consensus 406 ~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 406 LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999921000000000122399999999888888876665553
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-17 Score=158.96 Aligned_cols=183 Identities=15% Similarity=0.046 Sum_probs=116.3
Q ss_pred HHHhhhhhhhHHhcHHHHHHhcCCCchhhHH------------HHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHH
Q 018271 153 MLCGMGSGLATVNNISQIGESLGYPTSAINS------------LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAI 220 (358)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~------------~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~ 220 (358)
.++....+++...+.|++.++.|++...++. ...+..++.++|.++.++++||+ +||..+.+
T Consensus 297 ~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~------gRR~~l~~ 370 (502)
T TIGR00887 297 WFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII------GRKPIQLM 370 (502)
T ss_pred HHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------cchhHHHH
Confidence 3344445567778899999988987543211 23344556777899999999999 66666666
Q ss_pred HHHHHHHHHHHHH--hc--Cchh-HHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 221 TLATMSVGHIVVA--SG--FPGN-LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 221 ~~~~~~~~~~l~~--~~--~~~~-l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
+..+.+++.+++. .. +... +....+...++..+..+..+.+.+|++|++.|+++.|+.+..+.+|++ ++|.+.|
T Consensus 371 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~-~~~~~~~ 449 (502)
T TIGR00887 371 GFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAI-IGQFGFL 449 (502)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHH-HHHHHhh
Confidence 6666555544433 11 1111 222222222222334556778889999999999999999999999995 8999999
Q ss_pred HHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018271 296 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYK 345 (358)
Q Consensus 296 ~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (358)
++.+..+...+. +...++...|++.+++++++.+.. ++.+|++++..
T Consensus 450 ~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~l 496 (502)
T TIGR00887 450 YLAQHGDPTKGY--PTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSL 496 (502)
T ss_pred hhhccccccccc--cccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCH
Confidence 998854210000 001115667888888877776544 44567766443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=158.93 Aligned_cols=184 Identities=19% Similarity=0.291 Sum_probs=163.2
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
.++++++.|+.+.+...+...+++.....+|.+.++.|++..+++.++++.++.+++||++.|+++|+... .++.+
T Consensus 292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~----~~~~~ 367 (509)
T KOG2504|consen 292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI----RALVL 367 (509)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc----chHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999731 35566
Q ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHH
Q 018271 218 IAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 296 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~ 296 (358)
..++.+..+++.+.+. ..+...++..++++|++.|...++.+.++.|+.+.++...++|+......++. +.||++.|+
T Consensus 368 ~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~-l~gpPiag~ 446 (509)
T KOG2504|consen 368 FLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGA-LVGPPIAGL 446 (509)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHH-HcCccccee
Confidence 6677777777665555 56777888999999999999988888999999999999999999999999999 589999999
Q ss_pred HHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 297 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 297 l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
++|.+++ |...|+.++.+.+++..+.++..
T Consensus 447 ~~d~tg~-----------Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 447 LYDITGN-----------YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeccCC-----------eeeehhhcChHHHHHHHHHHHhH
Confidence 9999987 99999999999999987665554
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-16 Score=151.56 Aligned_cols=180 Identities=13% Similarity=0.191 Sum_probs=141.5
Q ss_pred HhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
+.++++.+|...+..++.....+....++|.+.++.|++..+++++.++..++..+++++.|+++||...++ .|+..+
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~ 313 (455)
T TIGR00892 236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP--HVQYLF 313 (455)
T ss_pred HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH--HHHHHH
Confidence 577889999888777777777677778899999999999999999999999999999999999999742211 122233
Q ss_pred HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 219 AITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 219 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
..+..+.++..++.. ..+.+.+++..++.|++.+...+..++++.|.+|++++|+.+|+.+....+|.. +||.++|.+
T Consensus 314 ~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~-igp~i~G~l 392 (455)
T TIGR00892 314 SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVL-IGPPLAGRL 392 (455)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHH-ccccceeee
Confidence 333333333333333 445566677788899988888888889999999999999999999999999995 899999999
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
.|..++ |+..|++.+++.+++++.
T Consensus 393 ~~~~g~-----------~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 393 VDATKN-----------YKYIFYASGSIVVSAGLF 416 (455)
T ss_pred ehhcCC-----------cchHHHHhhHHHHHHHHH
Confidence 998765 999999988877776653
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-16 Score=147.34 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~ 225 (358)
.+.++..+++.....+....|+|.+.++.|++..+.+.+.+...+++.+++++.|+++||+ +|+..+..+.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~~~~~~~~~~~~ 295 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL------RPRRVVLLIYAGI 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHH
Confidence 3444444444445556777889999999999999999999999999999999999999999 5555555555555
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCC
Q 018271 226 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 304 (358)
Q Consensus 226 ~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~ 304 (358)
.++.+++. ..+...+.+..++.|++.++.++..+++..|.+|+++||++.|+.+....+|.. ++|.+.|.+.++.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~~~g~l~~~~~~- 373 (406)
T PRK11551 296 LASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSM-AGPLLAGQLLALGRS- 373 (406)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHH-HHhhhHhhhhccCCc-
Confidence 55544444 344445556667778877777788889999999999999999999999999995 899999999998664
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 305 EGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 305 ~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
|...++....+.+++.++.+.
T Consensus 374 ----------~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 374 ----------TVGVIGASIPVILVAALAALL 394 (406)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=144.97 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=139.9
Q ss_pred hhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHH
Q 018271 140 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 219 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~ 219 (358)
.+++++.|.+.+.+++....++...+|+|.+.++.|++..+++.+.+++.+++.+|+++.|++.||+ +|+..+.
T Consensus 201 ~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~------~~~~~~~ 274 (393)
T PRK09705 201 VVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQ------DRRKLLM 274 (393)
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc------cchHHHH
Confidence 3456777877776766666777888999999999999999999999999999999999999999998 5555555
Q ss_pred HHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhC-CcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 220 ITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 220 ~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
++..+.+++..++. .+.. ...+..++.|++.+..++.......+.++ ++++|+.+|+.+..+.+++. ++|++.|++
T Consensus 275 ~~~~l~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-~gp~~~G~l 352 (393)
T PRK09705 275 LALVLQLVGFCGFIWLPLQ-LPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAG-LAPWFSGVL 352 (393)
T ss_pred HHHHHHHHHHHHHHHccch-HHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 56555555554433 2221 11223345677777776666666677775 56899999999999999884 899999999
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
.|..|+ |...|++.+++++++.++.+.+.++++.
T Consensus 353 ~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 353 RSISGN-----------YLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHhCC-----------chHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999886 9999999888888877666665555543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=143.71 Aligned_cols=187 Identities=16% Similarity=0.068 Sum_probs=134.3
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC--
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW-- 212 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~-- 212 (358)
..++.++++++|...+..++.......+..+.|.+.++ .|.+..+++++.+...+++.+++++.|+++||+++|+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 286 (399)
T TIGR00893 207 QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV 286 (399)
T ss_pred chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 45677889999998888888888888888899988864 699999999999999999999999999999999765310
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 213 ERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
........+..+.++........+.....+...+.+.+..+..+....++.|.+|++.||+++|+.+....+|.. ++|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~~~~ 365 (399)
T TIGR00893 287 FARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGI-VGPI 365 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhh-hhhH
Confidence 000011111111111111111111222223333333333336778889999999999999999999999999995 8999
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~ 334 (358)
+.|.+.|..|+ |+..|++.+++.+++.+..+
T Consensus 366 i~g~l~~~~g~-----------~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 366 VIGAIAATTGS-----------FAGALMVVAALALIGALSYL 396 (399)
T ss_pred HhhhhccCCCc-----------hhHHHHHHHHHHHHHHHHHH
Confidence 99999998876 88999988888777765543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=146.60 Aligned_cols=176 Identities=18% Similarity=0.261 Sum_probs=163.8
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
...+.+.++.|+.....+.....+|++.+|+|.|..++++.++.+.++..++.++...++||+ .||.++...+.
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~------~Rr~lLl~~l~ 86 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL------ERRRLLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc------chHHHHHHHHH
Confidence 456777888888888889999999999999999999999999999999999999999999999 88889999999
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhcc
Q 018271 224 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 224 ~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g 302 (358)
++.++.++.+ .+++..+.+.+++.|+..|..+++..++..++.|+++|+++.++++.+..++. ++|.+++.++-|..|
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~-v~GvPLGt~ig~~~G 165 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT-VLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH-HHhccHHHHHHHHhh
Confidence 9999999888 78899999999999999999999999999999999999999999999999998 689999999999999
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 303 SGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 303 ~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
||.+|++.+++.+++.+..+...+
T Consensus 166 ------------WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 ------------WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998877766655
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=145.62 Aligned_cols=188 Identities=15% Similarity=0.160 Sum_probs=131.4
Q ss_pred HhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
..++++.+|.+.+..++.....++..+++|.+.++ .|++..+++++.+++.+.+++++++.|+++||+++++ |...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~---~~~~ 322 (438)
T TIGR00712 246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN---RGAT 322 (438)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---ccHH
Confidence 46788999988877777766777888899999986 5999999999999999999999999999999996432 1111
Q ss_pred HHHHHHHHHHHHHHHH-h--cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHH
Q 018271 218 IAITLATMSVGHIVVA-S--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 294 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~-~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~ 294 (358)
.........++.+.+. . .+.....+..++.|++..+..........|.+|++.||+++|+.+....+|+..++|.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~ 402 (438)
T TIGR00712 323 GVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 402 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence 1111111112222222 1 122222333344444332222222345779999999999999998888777545789999
Q ss_pred HHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018271 295 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 341 (358)
Q Consensus 295 g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 341 (358)
|.+.|+.| |...|++.+++.+++.+..+++.+++|
T Consensus 403 G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 403 GYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHhcc------------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999887 999999988888888877766666544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-15 Score=141.72 Aligned_cols=175 Identities=22% Similarity=0.327 Sum_probs=138.3
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.++.++++.+|.+....++..........+.+.+.+++|.+..+.+.+.++..++..+++++.|+++||+ +|+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~~~ 271 (377)
T TIGR00890 198 VWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI------GRQK 271 (377)
T ss_pred HHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhh
Confidence 4567788888888777776665555566677778888999988889999999999999999999999999 5555
Q ss_pred HHHHHHHHHHHHHHHHH-hcCch--hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHH
Q 018271 217 FIAITLATMSVGHIVVA-SGFPG--NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~~~--~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
.+.++..+..++.+++. .++.. .++...++.|++.+..++..+.++.|.+|+++|++.+|+.+....+|.. ++|++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~~~ 350 (377)
T TIGR00890 272 TMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGI-FGGLI 350 (377)
T ss_pred hhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHH-HHHHH
Confidence 56666666666655544 22222 2334456777888877778888999999999999999999999999995 89999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
.|.+.+..| |+..|++.+++.+++.
T Consensus 351 ~g~l~~~~g------------~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 351 ASHALTEIG------------FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHhhhc------------hhhHHHHHHHHHHHhc
Confidence 999999887 9999998887776654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-15 Score=141.92 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=129.9
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.+++++++.+|.+.+.+++.....+++.+|+|+++++.|++.. .+...++..+.+.++ .++++||..||+ .|+.
T Consensus 185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~--~r~~ 258 (368)
T TIGR00903 185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAG--LRSI 258 (368)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhh--hHHH
Confidence 5678899999999999999999999999999999998898864 556655655555554 588999987652 2333
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 217 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
.......+.++....+. ..+....+....+.+++..+.++..+++.+|.+|++.||++.|+.+..+++|+. .+|++.+
T Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~-~~~~~~~ 337 (368)
T TIGR00903 259 YIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISV-ALALAAM 337 (368)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHH-HHHHHHH
Confidence 33323333344333333 233333344455566667677777889999999999999999999999999994 7898888
Q ss_pred HHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 296 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 296 ~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
.+.. + ....|.+.++..+++++..
T Consensus 338 ~~~~--~------------~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 338 LFIS--S------------AEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHhc--C------------HHHHHHHHHHHHHHHHHHH
Confidence 7773 3 7788888888888877664
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-15 Score=141.76 Aligned_cols=178 Identities=12% Similarity=0.059 Sum_probs=122.6
Q ss_pred hhhchhHHHHHH-HHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 140 SVCTLNFWLLFV-AMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 140 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
.+++++.|...+ ..++.....+...+|.|.+.+ ++|++.........+..+.+.++.++.|+++||+ +||+.
T Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~------grr~~ 318 (438)
T PRK09952 245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF------GRRRV 318 (438)
T ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchHH
Confidence 456666665543 344455566777888988876 5688877655556666778888999999999999 44454
Q ss_pred HHHHHHHHHHHHHHH--H--hcCch-hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHH-HhhhHHHHHhH
Q 018271 218 IAITLATMSVGHIVV--A--SGFPG-NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAI-ASPVGSYVCSV 291 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~--~--~~~~~-~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~-~~~ig~~i~gp 291 (358)
+..+.++.+++.+.+ . ..+.. .+.+..++.+++.+...+..+++++|.+|++.|+++.|+.+. +..+|+. ++|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~-~~p 397 (438)
T PRK09952 319 YITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGG-FTP 397 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHH-HHH
Confidence 555544443333222 1 11222 223344555677777777888999999999999999999754 4557874 789
Q ss_pred HHHHHHHhhc-cCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 292 RIIGYIYDNV-ASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 292 ~i~g~l~~~~-g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
.+.|++.|.. ++ |...+.+.+++.+++++..+.
T Consensus 398 ~i~g~l~~~~~~~-----------~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 398 FIAAALVTYFGGS-----------WHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHhcCCC-----------chHHHHHHHHHHHHHHHHHHH
Confidence 9999999865 33 888888888888877766543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=151.92 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.++...+..+...........+.|.+.++.|++..++++......+++++++++.|+++||+ +||..+.++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------~~~~~~~~~~~~ 358 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF------GRRPLLLIGAAG 358 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHH
Confidence 34444444444444444566788888889999998888888999999999999999999999 555556666555
Q ss_pred HHHHHHHHH---h--cC------chhHHHHHHHHHhhhh-cccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 225 MSVGHIVVA---S--GF------PGNLYVGSIIVGVCYG-CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 225 ~~~~~~l~~---~--~~------~~~l~~~~~l~g~~~g-~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
.+++.+++. . .. .........+.+.+.+ +..+....++.|.+|++.|++++|+.+....+|++ ++|.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~-i~~~ 437 (481)
T TIGR00879 359 MAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANF-IVGF 437 (481)
T ss_pred HHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 555544433 1 11 1122222233333333 33455667789999999999999999999999995 7899
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 341 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 341 (358)
+.|.+.++.+ |.+.|++.++++++++++..++.++++
T Consensus 438 ~~~~~~~~~~------------~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 438 LFPTMLESIG------------VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHhcC------------ccceehhHHHHHHHHHHHHheecccCC
Confidence 9999999877 889999999888888877665555544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=139.79 Aligned_cols=181 Identities=8% Similarity=-0.045 Sum_probs=117.2
Q ss_pred cHHHhhhchhHHHHHHHHHHh-hhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 136 NILQSVCTLNFWLLFVAMLCG-MGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
+.+++++++++|.+.+..++. ....+.+.+|+|.++++ +|++..+.+...++..+...++.++.|+++||++
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~g------ 307 (432)
T PRK10406 234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIG------ 307 (432)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------
Confidence 356677888888766655543 56667788899998864 6999888888888888888899999999999994
Q ss_pred hHHHHHHHHHHHHHHHH--HH-Hh-c-CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhh-HHH
Q 018271 214 RPSFIAITLATMSVGHI--VV-AS-G-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSY 287 (358)
Q Consensus 214 r~~~~~~~~~~~~~~~~--l~-~~-~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~i-g~~ 287 (358)
||..+.+..++.++..+ .. .. . +....+....+.+++.+...+..+.+.+|.||++.|++++|+.+..+++ .+.
T Consensus 308 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~ 387 (432)
T PRK10406 308 RRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGG 387 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHh
Confidence 44444433332222221 11 11 1 1221111222222333333455678889999999999999999766554 232
Q ss_pred HHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 288 VCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 288 i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
..|.+.+.+ +..|+ |...+++.++..+++.+..++
T Consensus 388 -~~p~~~~~l-~~~g~-----------~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 388 -SAEYVALSL-KSIGM-----------ETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred -HHHHHHHHH-HHhCC-----------CcHHHHHHHHHHHHHHHHHHH
Confidence 467777754 65664 766777777777766655444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-15 Score=143.17 Aligned_cols=186 Identities=9% Similarity=-0.051 Sum_probs=136.3
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.+..++++.++...+..++... ...+..++|.+.++ +|.+....+++.+...++..++.++.+++.||. +++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~------~~~ 289 (417)
T PRK10489 217 FRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA------RPG 289 (417)
T ss_pred HHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc------Ccc
Confidence 3456677776655544443322 34566788989887 799999999999999999999999999999985 444
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHH
Q 018271 216 SFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 294 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~ 294 (358)
..+..+.++.+++.+++. .++.....+..++.|++.+...+...+++.|.+|++.||+++|+.+....+|.. +||.+.
T Consensus 290 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~l~ 368 (417)
T PRK10489 290 LLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDA-IGAALL 368 (417)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHh-HHHHHH
Confidence 455555556666655554 333444556667778777766666778889999999999999999999999985 899999
Q ss_pred HHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 295 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 295 g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
|.+.|..| +...+++.+++.++..++.....+++|+
T Consensus 369 G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 369 GGLGAMMT------------PVASASASGFGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred HHHHHHhc------------hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999887 7778777776666655555444455444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-16 Score=147.75 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=141.3
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.++..++.+++.......+...+|.+.+++|+|..+.+++.+...++..+++++.|+++||+ +||+.+.++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~~~~~~~~ 97 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS------NARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc------CCchhHHHHHHH
Confidence 34444555555555555667789999999999999999999999999999999999999999 666777878888
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC
Q 018271 225 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 303 (358)
Q Consensus 225 ~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~ 303 (358)
..++.++.. ..+.+.+++.+++.|++.|..++....++.|.+|+++|++++|+.+.+..+|+. ++|++.|.+.+..+
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~~g- 175 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGA-LIPLVVGAIALHYG- 175 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccc-
Confidence 777777665 556666777788889888888888889999999999999999999999999994 89999999998877
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 304 GEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 304 ~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
|++.|++.+++.++.++...+.
T Consensus 176 -----------w~~~f~~~~i~~~~~~~~~~~~ 197 (434)
T PRK11663 176 -----------WRYGMMIAGIIAIVVGLFLCWR 197 (434)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887766554443333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=143.27 Aligned_cols=191 Identities=10% Similarity=0.029 Sum_probs=144.3
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCc--------hhhHHHHHHHHHHHHHhhhHhHHHHHHHhh
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPT--------SAINSLVSLWSIWNFLGRFGGGYVSDIVLH 208 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~--------~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~ 208 (358)
.++.+|++++|.+.+..++..........+.+.+.++.|.++ +..+...++..+..+++.+..|+++||+
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-- 278 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-- 278 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 345778888887777777665555455566777887777554 4568888999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHh-c-Cc---hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHH-HHh
Q 018271 209 RMGWERPSFIAITLATMSVGHIVVAS-G-FP---GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIA-IAS 282 (358)
Q Consensus 209 k~~~gr~~~~~~~~~~~~~~~~l~~~-~-~~---~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~-~~~ 282 (358)
+||+++.++.++.++...++.. . +. ..+++..++.|++.+...+....++.|.+|++.||+++|+.+ ...
T Consensus 279 ----g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~ 354 (418)
T TIGR00889 279 ----GIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN 354 (418)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 6677777777777776555542 2 12 234556778888888777777888999999999999999997 677
Q ss_pred hhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018271 283 PVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRT 340 (358)
Q Consensus 283 ~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 340 (358)
.+|+ ++||+++|+++|+.|+. +..+|+..|++.+++.++++++.+++.++.
T Consensus 355 ~lg~-~iGp~l~G~l~~~~g~~------~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 355 GFGS-LLGYILSGVMVEKMFAY------GTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred hhHH-HHHHHHHHHHHHHhccc------cCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8898 48999999999986520 001299999999888888887776666544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=147.23 Aligned_cols=186 Identities=17% Similarity=0.181 Sum_probs=128.5
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC-ch
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW-ER 214 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~-gr 214 (358)
.++.++++++|.+++.+++.....+.+.+++|.+..+ .|++..+++.+.++..+++.+|++++|+++||+++|+.. +|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r 324 (476)
T PLN00028 245 LRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGR 324 (476)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchh
Confidence 5667888999988887776666667778889988764 599999999999999999999999999999999887532 34
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHH
Q 018271 215 PSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
+....+...+..+..+++. ..+.....+..++.+++.+...+...++++++. ++++|+.+|+.+.++.+|+. ++|.+
T Consensus 325 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~-i~~~l 402 (476)
T PLN00028 325 LWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAV-LTQLL 402 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHH-HHHHH
Confidence 4444444444444334333 223333344455556655545555555666654 47899999999887777774 45544
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
.+ .+..++ |+..|++.+++.++++++.++.+
T Consensus 403 ~~--~~~~~~-----------y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 403 FF--TGSSYS-----------TETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HH--hcCCcc-----------HhhHHHHHHHHHHHHHHHHHhee
Confidence 33 111222 99999999988888877665553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=143.90 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.+|.+.++.++.....+.....+|.+.+++|.+..+.++..+.+.++..++.+..|+++||+ +||+++..+..+
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~ 83 (390)
T PRK03545 10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV------ERRKLLIGLFVL 83 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------ChHHHHHHHHHH
Confidence 34555554444433444455568999999999999999999999999999999999999999 777788888888
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC
Q 018271 225 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 303 (358)
Q Consensus 225 ~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~ 303 (358)
.+++.+... .++.+.+++.+++.|++.+..++...+++.|.+|+++|++++|+...+..+|. +++|++++.+.+..|
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~-~ig~~l~~~l~~~~g- 161 (390)
T PRK03545 84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM-VLGLPLGRVIGQYLG- 161 (390)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH-HHHhhHHHHHHHHhc-
Confidence 888777766 57777888889999998887778888999999999999999999999999999 489999999988877
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 304 GEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 304 ~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
|++.|++.++++++..+....
T Consensus 162 -----------w~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 162 -----------WRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877776654443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-15 Score=141.84 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.++.+++.+++............|.+.+++|++.++.++..+.+.++..++.+..|+++||+ |||+.+..+.++
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------G~r~~~~~~~~~ 82 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII------GARRWIAGIMVL 82 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh------ChHHHHHHHHHH
Confidence 33444555555444445556667778889999999999999999999999999999999999 777778888888
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC
Q 018271 225 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 303 (358)
Q Consensus 225 ~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~ 303 (358)
..++.++.. .++...+++.+++.|++.++.++....++.|.+|+++|++..|+.+.+..+|.. ++|++++++.+..+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~- 160 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA-LGLILSGYILALDG- 160 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-
Confidence 887777766 567778889999999999988888888899999999999999999999999994 89999998875311
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 304 GEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 304 ~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
..+..+||+.|++.++..++.+++.+++.++
T Consensus 161 -----~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 161 -----LMALKGWQWLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred -----CCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence 0001129999999888777665555444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-14 Score=133.25 Aligned_cols=174 Identities=13% Similarity=0.153 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
+.+|.+.+..++.....+.+..|+|.+++ ++|+|..+++.+.+.+.++..+|+++.|+++||+ +|+..+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~------~~~~~l~~~~ 278 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF------DLQRILTVLA 278 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh------chhhHHHHHH
Confidence 55677777777766677788899999996 4699999999999999999999999999999999 4444455444
Q ss_pred HHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc
Q 018271 223 ATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 301 (358)
Q Consensus 223 ~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~ 301 (358)
.+.++...++. .++...+.+..++.|++.++.++...++..|..+ +++++..|+......+|+. ++|.+.|++.|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-i~p~~~G~l~~~~ 356 (394)
T PRK03699 279 GLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTM-LTFVVTSPIVAHF 356 (394)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHHh
Confidence 44444444443 3444455566777888877777777777777665 4567888998888899984 8999999999988
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 302 ASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 302 g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
| ++..+++.+++.+++.+.+..+.
T Consensus 357 g------------~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 357 G------------LQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred C------------chhhhhhhHHHHHHHHHHHHHHH
Confidence 7 88999988888887776554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-14 Score=136.53 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=113.3
Q ss_pred cHHHhhhchhHHHHHHHH---HHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 136 NILQSVCTLNFWLLFVAM---LCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
+.++.++++.++.....+ ++.....+.+..++|.+.++.|++..+.+.+.+...+++.+++++.|+++||+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~------ 293 (426)
T PRK12307 220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI------ 293 (426)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 356677777766543322 22333334567789999998999998889888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHh--hhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 213 ERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGV--CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~--~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
+|+..+..+.++..+..+++. ..+.....+..++.|+ +..+..+..+.++.|.+|++.||+++|+.+....+|+. +
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~-~ 372 (426)
T PRK12307 294 GLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGT-F 372 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHH-H
Confidence 555666666555554444333 2222222222333333 22334456778889999999999999999999999984 8
Q ss_pred hHHHHHHHHhhcc
Q 018271 290 SVRIIGYIYDNVA 302 (358)
Q Consensus 290 gp~i~g~l~~~~g 302 (358)
+|.+.|++.+..|
T Consensus 373 gp~~~g~l~~~~g 385 (426)
T PRK12307 373 NSMAATWLGITMG 385 (426)
T ss_pred HHHHHHHHHHccc
Confidence 9999999999877
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=147.24 Aligned_cols=182 Identities=10% Similarity=0.039 Sum_probs=122.3
Q ss_pred ccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 135 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
.+.+++++++.++...+..++..+........++.+..+.+.+.. ....+..+..+++.++.++++||+ +|
T Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~------gr 384 (505)
T TIGR00898 314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRL------GR 384 (505)
T ss_pred CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHh------CC
Confidence 356788888887766554443333222222223333344455432 333455677888999999999999 66
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcCc--hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH
Q 018271 215 PSFIAITLATMSVGHIVVA-SGFP--GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~-~~~~--~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
|..+.++.++.+++.+++. ..+. ....+..++.+++.+..++..+.+.+|.+|++.|++++|+.+....+|++ ++|
T Consensus 385 r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~-i~p 463 (505)
T TIGR00898 385 RYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSI-ISP 463 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHH-HHh
Confidence 7777777777776666554 3322 33344455666667777788889999999999999999999999999994 899
Q ss_pred HHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018271 292 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 341 (358)
Q Consensus 292 ~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 341 (358)
++.+ + +..+ +...+.+.+++.+++.++.++ .++++
T Consensus 464 ~i~~-~-~~~~------------~~~~~~~~~~~~~~~~~~~~~-lpet~ 498 (505)
T TIGR00898 464 FLVY-L-GEKW------------LFLPLVLFGGLALLAGILTLF-LPETK 498 (505)
T ss_pred HHHH-H-HHHH------------HhhHHHHHHHHHHHHHHHHHc-CcCCC
Confidence 9988 4 3343 567777777777777655443 34444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=145.02 Aligned_cols=174 Identities=14% Similarity=0.251 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
+.+|.++++.++.....+.+..++|.+.+++|.+..+.++..+.+.++..++.+++|+++||+ +||+.+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~r~~~~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV------GVRNIFFTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------chHHHHHHHHH
Confidence 467888888888877778888899999999999999999999999999999999999999999 66666666666
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhcc
Q 018271 224 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 224 ~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g 302 (358)
+.+++.+++. .++.+.+++.+++.|++.+...+....++.|.+|+++|++++|+.+....+|. .++|.++|.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~g~l~~~~g 162 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGP-LLGPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhhcc
Confidence 6666665555 45666778889999999998888888999999999999999999999999998 489999999999877
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 303 SGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 303 ~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
|++.|++...+..++.+.....
T Consensus 163 ------------w~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 163 ------------WHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888777776555444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-14 Score=134.97 Aligned_cols=173 Identities=10% Similarity=-0.017 Sum_probs=145.0
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.++.+|++++|.+.+..++.......+.++.|.+.++.|.+....+.+.++..++.+++.++.+++.||+ +.+.
T Consensus 198 ~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~------g~~~ 271 (382)
T TIGR00902 198 FIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC------SARD 271 (382)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC------CHHH
Confidence 5678899999999888888777788888899999999999999999998888889999999999999998 6667
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHH-HHhhhHHHHHhHHHH
Q 018271 217 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIA-IASPVGSYVCSVRII 294 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~-~~~~ig~~i~gp~i~ 294 (358)
.+.++.+...+...++. .++.+.+++..++.|+..+...+....++.+. |+++++++.++.+ +...+|. .++|.++
T Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~-~~g~~~~ 349 (382)
T TIGR00902 272 LLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLI-AIFTAFA 349 (382)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 77788888887777766 55666677788999999998888888899988 8889999999986 5677888 4899999
Q ss_pred HHHHhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 295 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 295 g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
|+++|+.| + ..|+.++++.+++.
T Consensus 350 G~l~~~~g------------~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 350 GFIYPTLG------------A-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHhcc------------H-HHHHHHHHHHHHHH
Confidence 99999986 6 66777777776554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=142.15 Aligned_cols=173 Identities=12% Similarity=0.166 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
+.++.+.+..++...........+|.+.+++|++.++.++..+...++..+++++.|+++||+ +||+.+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~ 76 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY------SLKHILLFLVA 76 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC------ccHHHHHHHHH
Confidence 456777777777777777788899999999999999999999999999999999999999999 77777888888
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhcc
Q 018271 224 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 224 ~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g 302 (358)
+.+++.++.. .++.+.+++.+++.|++.+...+....++.|++++++|+..+++...+..+|.. ++|++++.+.+..+
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~g 155 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANL-LGIPLGTYLSQEFS 155 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHH-HhccHHHHHhhhcc
Confidence 8888777776 567788888999999998887777788899999999999999999999999994 78999999988777
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 303 SGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 303 ~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
|++.|++.+++.++..+..+.
T Consensus 156 ------------wr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 156 ------------WRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877766554433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-14 Score=132.57 Aligned_cols=180 Identities=10% Similarity=0.031 Sum_probs=134.0
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.++.++++.+|...+..++.....+++.+++|.+.+++|++..+.+.+.+...+++.+++++.|+++||+++| +.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----~~ 289 (402)
T TIGR00897 215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM-----NT 289 (402)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hH
Confidence 4567889999988888777777778888999999999999999988888899999999999999999999533 22
Q ss_pred HHHHHHHHHHHHHHHH---Hh---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHh
Q 018271 217 FIAITLATMSVGHIVV---AS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 290 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~---~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~g 290 (358)
....+.....+..+.+ .. .+....++..++.|++.+...+ ......|.. +++||+++|+.+....+|+. ++
T Consensus 290 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~-~g 366 (402)
T TIGR00897 290 VRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAF-LA 366 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHH-HH
Confidence 2222222222221111 11 2233445566777877766543 345566754 46899999999999999995 89
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
|++.|.+.|..| |...|++.+++.++++++.+++
T Consensus 367 p~i~g~l~~~~g------------~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 367 PAIAVLFIGFFG------------AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHhhcc------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987 8999999998888877665554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9e-15 Score=142.23 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=119.4
Q ss_pred hhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-h--cC-
Q 018271 161 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S--GF- 236 (358)
Q Consensus 161 ~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~--~~- 236 (358)
+...++.|.+.++.|++.....+......+.+.++.++.|+++||+ +||..+..+..+.+++.+++. . .+
T Consensus 288 ~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~------g~r~~~i~~~~~~~v~~~~l~~~~~~~~ 361 (479)
T PRK10077 288 NVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF------GRKPLQIIGALGMAIGMFSLGTAFYTQA 361 (479)
T ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh------cChHHHHHhHHHHHHHHHHHHHHHhcCc
Confidence 3455677888889999887777777788889999999999999999 667777777777777666553 1 12
Q ss_pred ch-hHHHHHHHHHhhhhcc-cccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH------HhhccCCCCCc
Q 018271 237 PG-NLYVGSIIVGVCYGCQ-WSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI------YDNVASGEGNS 308 (358)
Q Consensus 237 ~~-~l~~~~~l~g~~~g~~-~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l------~~~~g~~~~~~ 308 (358)
.. ......++.+++.+.. .+..+.+++|.+|+++|+++.|+.+..+.+|.. +++.+.+.+ .|..+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~-~~~~~~p~~~~~~~~~~~~~------ 434 (479)
T PRK10077 362 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANY-FVSWTFPMMDKNSWLVAHFH------ 434 (479)
T ss_pred ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHH-HHHHHhHHHHhccchhhhcc------
Confidence 12 2222334444444433 356788999999999999999999988888884 565555543 34555
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018271 309 CNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 347 (358)
Q Consensus 309 ~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (358)
+...|++.++++++++++.+++.+|+|++..++
T Consensus 435 ------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 467 (479)
T PRK10077 435 ------NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 467 (479)
T ss_pred ------CccHHHHHHHHHHHHHHHHHhccccCCCCCHHH
Confidence 777888888877777776666666666554433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-15 Score=148.47 Aligned_cols=183 Identities=13% Similarity=0.082 Sum_probs=137.3
Q ss_pred chhHHHHHHHHHHhhhh----hhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 143 TLNFWLLFVAMLCGMGS----GLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
.+..|.+++...+.... ...+...+|.+.+++|.+..+.+++.++..++.++|.+++|+++||+ |||..+
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~------GRR~~l 235 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL------GRKQCL 235 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHH
Confidence 35555554443333221 12345567888889999999999999999999999999999999999 777777
Q ss_pred HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 219 AITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 219 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
+++.++.+++.++.. .++.+.+++.+++.|++.++..+..+.++.|.+|++.||..+++..++..+|.+ +++.++..+
T Consensus 236 ii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~i-la~~la~~i 314 (742)
T TIGR01299 236 LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI-YAAAMAWAI 314 (742)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 777777777666655 566777888999999999999999999999999999999999999999999984 788877777
Q ss_pred HhhccCCCC-CccccccchHHHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEG-NSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 298 ~~~~g~~~~-~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
....|-... ...+...+|++.+++.++.++++.+.
T Consensus 315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred HHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence 654431000 01122334999988877766665543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-14 Score=132.94 Aligned_cols=179 Identities=11% Similarity=0.056 Sum_probs=132.2
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.+|++.+|..++..++.....+...++++.+.++ .|++..+++++.+...+++.+++++.|+++||+ +|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~------~~~ 271 (390)
T PRK03545 198 LPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH------PSG 271 (390)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc------chh
Confidence 3567788888776666655555555556677777665 599999999999999999999999999999998 454
Q ss_pred HHHHHHHHHHHHHHHHH-H-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHH
Q 018271 216 SFIAITLATMSVGHIVV-A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~-~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
.... +..+..+...++ . ..+...+++..++.|++.+.........+.+..| +.+++++|+.+....+|.. +||++
T Consensus 272 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~G~~~ 348 (390)
T PRK03545 272 FLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIG-AGALL 348 (390)
T ss_pred HHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4333 333333333322 2 3344455667778888776665556677778766 6889999999988898885 79999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
+|.+.|+.| ++..|++.+++.+++.+..+..
T Consensus 349 ~G~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 349 GNQVSLHLG------------LSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHhccC------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 9999999998888877665433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-15 Score=136.52 Aligned_cols=185 Identities=15% Similarity=0.191 Sum_probs=142.4
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
..+.++++++.|.+.+.|+...+++.++..++|.|.+ ++|.+..+++.+.....+.+.+.|+++|+++||+| ++
T Consensus 210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~G-----g~ 284 (417)
T COG2223 210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIG-----GR 284 (417)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhcc-----ch
Confidence 4566788999999999999999999999999999988 56999999999999999999999999999999996 44
Q ss_pred HHHHHHHHHHHHHHHHHHH-hc-------CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHH
Q 018271 215 PSFIAITLATMSVGHIVVA-SG-------FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 286 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~-~~-------~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~ 286 (358)
|.++ +.+..++++..+.. .. +....+...+..+++.|...+..+.+++.+|+ ++.|...|+....+++|+
T Consensus 285 rv~~-~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGG 362 (417)
T COG2223 285 RVTL-AVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGG 362 (417)
T ss_pred hHHH-HHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccc
Confidence 4444 44555555555444 21 12223333334444444444445556666666 377999999999999999
Q ss_pred HHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 287 YVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 287 ~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
+ +-|...|..++.+|+ |...|+++..+.+++.+..+..+.|
T Consensus 363 f-~lp~~~g~~~~~tg~-----------~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 363 F-FLPLAFGVSLDLTGS-----------YTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred c-chhHHHHHHHHhccc-----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 669999999999997 9999999999998888776665544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-15 Score=140.10 Aligned_cols=156 Identities=11% Similarity=0.169 Sum_probs=134.9
Q ss_pred hhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-h
Q 018271 156 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 234 (358)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~ 234 (358)
.....+.....+|.+.+++|++.++.++..+...++..+++++.|+++||+ +||+.+..+.++.+++.++.. .
T Consensus 32 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~------grr~~~~~~~~~~~~~~~~~~~~ 105 (394)
T PRK10213 32 LIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT------DRRYVVILFAVLLTLSCLLVSFA 105 (394)
T ss_pred HHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556678889999999999999999999999999999999999999 777788888888887777666 5
Q ss_pred cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccc
Q 018271 235 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 314 (358)
Q Consensus 235 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~ 314 (358)
++.+.+++.+++.|++.+..++....+++|.+|+++|+.+.++...+..+|. +++|++++.+.+..+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~-~ig~~l~~~l~~~~g------------ 172 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL-VIAAPLGSFLGELIG------------ 172 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcC------------
Confidence 6678888999999999998888999999999999999999999999999998 489999999998887
Q ss_pred hHHHHHHHHHHHHHHH
Q 018271 315 FMLSFLIMASVAFVGC 330 (358)
Q Consensus 315 ~~~~f~~~~~~~~~~~ 330 (358)
|++.|++.+++.+++.
T Consensus 173 w~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 173 WRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998877666544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-16 Score=141.48 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.+..+++++......--.+....|.+.++.|+|.++.+.+.+.+.+...++.+++|.++||. +.|..+.+++++
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~------npr~fm~~gLil 103 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS------NPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC------CCceeehHHHHH
Confidence 44444555544444444577788999999999999999999999999999999999999998 566778889999
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHH--HHHHhhc
Q 018271 225 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII--GYIYDNV 301 (358)
Q Consensus 225 ~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~--g~l~~~~ 301 (358)
.++..+++. ..+...+.++.++.|++.|..++.....+...|++++||+..++.|++.++|+. +.|++. +++.++.
T Consensus 104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGa-l~~~~~~la~~~~~~ 182 (448)
T COG2271 104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGA-LAPLVALLAFFAFHG 182 (448)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccc-hHHHHHHHHHHHhcc
Confidence 999999888 555666778889999999999999999999999999999999999999999997 567777 8888877
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 302 ASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 302 g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
+ |+..|++-++++++..++.++..+
T Consensus 183 ~------------w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 183 G------------WRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred c------------hhHHHHHHHHHHHHHHHHHHHHhC
Confidence 6 999999999988888877665543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=138.91 Aligned_cols=181 Identities=15% Similarity=0.141 Sum_probs=131.8
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh----cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES----LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
..+.+|++.+|.+.+..++.......+..+.|.+..+ .+.+..+.+.+.++..++..++.++.|+++||+
T Consensus 216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------ 289 (420)
T PRK09528 216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI------ 289 (420)
T ss_pred HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 3456778887765554444333333444456666543 356666778888888999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHH-HHHHhhhHHHHHh
Q 018271 213 ERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNT-IAIASPVGSYVCS 290 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~-~~~~~~ig~~i~g 290 (358)
+++..+..+.++.++..+++. .++++.++...++.|++.+........++.|.+|++.+++.++. .+....+|. +++
T Consensus 290 g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~-~ig 368 (420)
T PRK09528 290 GAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGA-VFL 368 (420)
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHH-HHH
Confidence 455556666666666666555 45566666667777777766666667788999999999988766 577788888 489
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
|++.|++.|..| |+..|.+.+++.++..++....
T Consensus 369 ~~~~G~l~~~~G------------~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 369 STLAGNLYDSIG------------FQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHHHhhC------------chHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 9999999888877776554443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-15 Score=140.83 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=120.1
Q ss_pred hchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc--CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHH
Q 018271 142 CTLNFWLLFVAMLCGMGSGLATVNNISQIGESL--GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 219 (358)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~ 219 (358)
+++.+|...+.+++.....+.+.+|+|.++++. |++..+++.+.+...+++.+|+++.|+++||+++ |+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~-----r~~~~~ 314 (412)
T TIGR02332 240 FTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKE-----RKHHTA 314 (412)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCc-----cHHHHH
Confidence 457889888888888888888999999999975 6777888889999999999999999999999953 232333
Q ss_pred HHHHHHHHHHHHHHh-cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 018271 220 ITLATMSVGHIVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 298 (358)
Q Consensus 220 ~~~~~~~~~~~l~~~-~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~ 298 (358)
....+..++..+... .+....+....+.+++.....+.......|.+|+++|++++|+.+....+|++ ++|.+.|.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~-~~p~~~g~i~ 393 (412)
T TIGR02332 315 LPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSA-LSPFLIGILK 393 (412)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhh-hhhhhccccc
Confidence 333333333322222 22221222222333333223333445556789999999999999999999995 8999999999
Q ss_pred hhccCCCCCccccccchHHHHHHHHHHH
Q 018271 299 DNVASGEGNSCNGTHCFMLSFLIMASVA 326 (358)
Q Consensus 299 ~~~g~~~~~~~~g~~~~~~~f~~~~~~~ 326 (358)
|..|+ |++.|++.+++.
T Consensus 394 ~~~g~-----------~~~~~~~~~~~~ 410 (412)
T TIGR02332 394 DATGS-----------FNSGLWFVAALL 410 (412)
T ss_pred ccCCC-----------CchhHHHHHHHH
Confidence 98876 999988776643
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-15 Score=139.51 Aligned_cols=165 Identities=14% Similarity=0.167 Sum_probs=138.7
Q ss_pred hhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-h
Q 018271 156 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 234 (358)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~ 234 (358)
.......+...+|.+.+++|.+..+.++..+...++..++.++.|+++||+ +||+.+..+.++.+++.++.. .
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~------g~r~~~~~~~~~~~~~~~~~~~~ 90 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY------GRRPVLLLGLFIFALSSLGLALS 90 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc------CChHHHHHHHHHHHHHHHHHHHH
Confidence 344445566778899999999999999999999999999999999999999 666777777777777777666 5
Q ss_pred cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccc
Q 018271 235 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 314 (358)
Q Consensus 235 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~ 314 (358)
++.+.+++.+++.|++.+...+....++.|.+|+++|++.+|+.+....+|.. ++|.+++.+.+..+
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~------------ 157 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPA-VAPLLGGYILVWLS------------ 157 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC------------
Confidence 66677788889999999988888899999999999999999999999999984 89999999998877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 315 FMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 315 ~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
|+..|++.+++.++..+..++..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (385)
T TIGR00710 158 WHAIFAFLSLAGILLSALIFFILPE 182 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999888777776655444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.9e-14 Score=134.15 Aligned_cols=185 Identities=16% Similarity=0.200 Sum_probs=151.1
Q ss_pred ccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 135 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
.+.+++.|.++....++++++..-+...++.....|.+ ++|++..+...+..+.++.+++|.+++|++.||+|.|.
T Consensus 272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~--- 348 (477)
T PF11700_consen 272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT--- 348 (477)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---
Confidence 35667777888888889999888888888888888877 77999999888899999999999999999999996431
Q ss_pred hHHHHHHHHHHH-HHHHHHHH--------hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhh
Q 018271 214 RPSFIAITLATM-SVGHIVVA--------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV 284 (358)
Q Consensus 214 r~~~~~~~~~~~-~~~~~l~~--------~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~i 284 (358)
+.++.++.++. .+....+. ..+.+.+++..++.|++.|+.++..-++.+|+.|+++.+..+|+..+.+..
T Consensus 349 -~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ 427 (477)
T PF11700_consen 349 -KRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA 427 (477)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 13333333332 33333222 345567888899999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 285 GSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 285 g~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
.++ +||.+.|.+.+.+|+ .|..+..+.++.+++.++.+.
T Consensus 428 ss~-lGPll~g~i~~~tg~-----------~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 428 SSW-LGPLLFGLITDATGS-----------QRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHH-HHHHHHHHHHHHhCC-----------chhHHHHHHHHHHHHHHHHhh
Confidence 995 899999999999987 899999999888888766533
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9e-15 Score=138.93 Aligned_cols=176 Identities=10% Similarity=0.063 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
+.+|.+.+..++...+......++|.+++ ++|++..+.++..+...+++.+++++.|+++||+ +||+.+.++.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~------g~k~~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF------DKKRYMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CcchhHHHHH
Confidence 45777777888887777778888887775 6799999999999999999999999999999999 5556666666
Q ss_pred HHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc
Q 018271 223 ATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 301 (358)
Q Consensus 223 ~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~ 301 (358)
.+..++.+++. .++.+.+++.+.+.|.+.+...+....+.+|.+|+++|++++|+.+....+|.. ++|++++.+.+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~-igp~l~~~l~~-~ 158 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWT-VGPPLGTLLVM-Q 158 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-h
Confidence 66666666555 445555555566666666666667788899999999999999999999999984 89999998875 4
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 302 ASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 302 g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
+ |+..|++.+++.+++.++..+..++
T Consensus 159 g------------~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 159 S------------INLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred c------------cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 9999998888777776554443333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-15 Score=141.84 Aligned_cols=190 Identities=13% Similarity=0.102 Sum_probs=132.8
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
++++.++++.+|.+++..++.....+.+.+|+|.|+++ +|++..+++++.++..+++.++.++.|+++||+++|+...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~ 332 (465)
T TIGR00894 253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL 332 (465)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 46788999999999999998888888899999998875 69999999999999999999999999999999987654233
Q ss_pred HHH----HHHHHHHHHHHHHHHHh-c-CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHH
Q 018271 215 PSF----IAITLATMSVGHIVVAS-G-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYV 288 (358)
Q Consensus 215 ~~~----~~~~~~~~~~~~~l~~~-~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i 288 (358)
+.. ..++.....+..+.... . +....++...+.+++.++..+.......|..| +.+|+..|+.+..+.+|++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~- 410 (465)
T TIGR00894 333 TAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGL- 410 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHH-
Confidence 222 11111111111212221 2 22223333444444444444444445556665 5899999999999999995
Q ss_pred HhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 289 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 289 ~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
++|.+.|++.+..+. ..|...|++.+++.+++.++..++
T Consensus 411 i~p~l~g~~~~~~~~---------~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 411 IASTLAGNILSQDSK---------NVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHhhheeeCCCCc---------hHHHHHHHHHHHHHHHHHHHeeee
Confidence 789999998875411 118999999988888887655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-15 Score=142.94 Aligned_cols=174 Identities=9% Similarity=0.041 Sum_probs=145.4
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~ 225 (358)
+..+.+..++...-.......+|++.+++|.+..+.++..+.+.++..++.+.+|+++||+ |||+.+..+..+.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~------Grk~~l~~~~~~~ 81 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI------GFKRLLMLGGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHH
Confidence 3445556666666666777789999999999999999999999999999999999999999 7778888888888
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhh-CCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC
Q 018271 226 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIF-GVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 303 (358)
Q Consensus 226 ~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f-~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~ 303 (358)
.++.+++. .++.+.+++.+++.|++.+...+.....+.+.+ |+++|++++|+......+|. .+||+++|.+.++.+
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~-~~gp~lgg~l~~~~g- 159 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGA-AFGPLVGGILLEHFY- 159 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCC-
Confidence 88888777 677788888999999999887776667777776 67899999999999999999 589999999999887
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 304 GEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 304 ~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
|++.|++...+.++..++.....+
T Consensus 160 -----------wr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 160 -----------WGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999988777776655544433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=138.31 Aligned_cols=171 Identities=12% Similarity=-0.002 Sum_probs=139.8
Q ss_pred HHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~ 226 (358)
|.++...++...........+|.+..+.|.+..+.+++.+...++..++.++.|+++||+ +||+.+..+.++..
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~------g~r~~~~~~~~~~~ 75 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRY------DRKKVMIGADLIRA 75 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh------chhHHHHHHHHHHH
Confidence 445566666666666677788889999999999999999999999999999999999999 66666776666655
Q ss_pred HHHHHHH-hc-----CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhh
Q 018271 227 VGHIVVA-SG-----FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300 (358)
Q Consensus 227 ~~~~l~~-~~-----~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~ 300 (358)
++.++.. .. +.+.+++.+++.|++.+...+...++++|.+|+++|++.+|+.+.+..+|. +++|.+++.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~ 154 (365)
T TIGR00900 76 VLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFY-IVGPGIGGLMYAT 154 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5554443 33 566777888999999998888899999999999999999999999999999 5899999999988
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 301 ~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
.+ |++.|++.++..+++.+..+.+
T Consensus 155 ~g------------~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 155 LG------------IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred hh------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 87 9999998887766665444333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-14 Score=131.81 Aligned_cols=172 Identities=13% Similarity=0.051 Sum_probs=122.8
Q ss_pred HHhhhchh--HHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 138 LQSVCTLN--FWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
++.++++. ++......++.....+....++|.+.+ +.|.+..+.+...+...+++.+++++.|+++||+ +|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~ 284 (394)
T TIGR00883 211 RETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI------GR 284 (394)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------ch
Confidence 44455543 666666666666666777788998885 5699998999999999999999999999999999 44
Q ss_pred HHHHHHHHHHHH-HHHH-HHH-h--cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHH-HHHhhhHHHH
Q 018271 215 PSFIAITLATMS-VGHI-VVA-S--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYV 288 (358)
Q Consensus 215 ~~~~~~~~~~~~-~~~~-l~~-~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~-~~~~~ig~~i 288 (358)
|..+.....+.. .... ... . .+...+....++.|++.+..++...+++.|.+|++.|++++|+. +.+..+|+ .
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~-~ 363 (394)
T TIGR00883 285 RPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG-G 363 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh-h
Confidence 444443322222 2211 111 1 23334445567778888788888899999999999999999985 56666787 4
Q ss_pred HhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHH
Q 018271 289 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAF 327 (358)
Q Consensus 289 ~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~ 327 (358)
++|.+.|.+.|+.|. |+..++...++.+
T Consensus 364 ~~p~~~g~l~~~~g~-----------~~~~~~~~~~~~l 391 (394)
T TIGR00883 364 FAPYIAAALVAMTGD-----------WYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHcCc-----------chhHHHHHHHHHH
Confidence 799999999998875 7776666555433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-15 Score=144.12 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=146.1
Q ss_pred HHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~ 226 (358)
..+.+..++...........+|.+.+++|.+..+.++..+.+.++..++.++.|+++||+ +||+.+.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~ 78 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF------GTRRLFLISTFAFT 78 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh------CcHHHHHHHHHHHH
Confidence 344455555555556677789999999999999999999999999999999999999999 77777888888888
Q ss_pred HHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCC
Q 018271 227 VGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE 305 (358)
Q Consensus 227 ~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~ 305 (358)
++.+++. .++...+++.+++.|++.+...+....++.|.+|+++|++++++...+..+|.. ++|.++|++.++.+
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~--- 154 (485)
T TIGR00711 79 LGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPA-LGPTLGGWIIENYH--- 154 (485)
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhh-hhhccHhHhccCcC---
Confidence 8777776 566777888999999999988888999999999999999999999999999994 89999999998877
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 306 GNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 306 ~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
|++.|++.+.+.++..++..+..++
T Consensus 155 ---------w~~~f~~~~~~~~~~~~~~~~~~~~ 179 (485)
T TIGR00711 155 ---------WRWIFLINVPIGIIVVVVAFFILPR 179 (485)
T ss_pred ---------ceehhhhhhHHHHHHHHHHHHHcCC
Confidence 9999999888777776655544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=139.07 Aligned_cols=165 Identities=19% Similarity=0.264 Sum_probs=139.0
Q ss_pred HHHHHHhhhhhhhHHhcHH-HHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHH
Q 018271 150 FVAMLCGMGSGLATVNNIS-QIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVG 228 (358)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~-~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~ 228 (358)
++..++...........+| .+.+++|.+..+.+++.+...++..++.++.|+++||+ +||+.+.++.++.+++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~l~~~~~~~~~~ 75 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF------GRRRVLIIGLLLFALG 75 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCeeeEeehhhhhhhH
Confidence 3445555555566777788 67778899999999999999999999999999999999 6677788888888887
Q ss_pred HHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCC
Q 018271 229 HIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGN 307 (358)
Q Consensus 229 ~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~ 307 (358)
.++.. ..+.+.+++.+++.|++.+...+....++.|.+|+++|++.+|+.+.+..+|. +++|.+++.+.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~~~----- 149 (352)
T PF07690_consen 76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGS-ILGPLLGGFLISYFG----- 149 (352)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHCH-----
T ss_pred HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhh-hcccchhhhhhhccc-----
Confidence 44444 35656778889999999999999999999999999999999999999999999 589999999987777
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHH
Q 018271 308 SCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 308 ~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
|++.|++.+++.++.+++.
T Consensus 150 -------~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 150 -------WRWAFLISAILSLIAAILF 168 (352)
T ss_dssp -------HCCHHHHHHHHHHHHHHHH
T ss_pred -------cccccccccchhhhhhhhH
Confidence 9999999999888887643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-14 Score=134.66 Aligned_cols=168 Identities=13% Similarity=0.158 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.+...++.+++.....+......|.+.+++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~------g~r~~~~~~~~~ 86 (405)
T TIGR00891 13 AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY------GRRLPMVTSIVL 86 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHH
Confidence 34455566666666666677788889899999999999999999999999999999999999 666777777777
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC
Q 018271 225 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 303 (358)
Q Consensus 225 ~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~ 303 (358)
.+++.++.. .++.+.+++.+++.|++.+..++...+++.|.+|+++|+.+.|+.+.+..+|. +++|.+.+.+.+..+.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA-VVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCc
Confidence 777766665 56677788889999999998888889999999999999999999999999999 4889999988876541
Q ss_pred CCCCccccccchHHHHHHHHHHHHHH
Q 018271 304 GEGNSCNGTHCFMLSFLIMASVAFVG 329 (358)
Q Consensus 304 ~~~~~~~g~~~~~~~f~~~~~~~~~~ 329 (358)
+|++.|++.++..++.
T Consensus 166 ----------~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 166 ----------GWRALFFISILPIIFA 181 (405)
T ss_pred ----------cHHHHHHHHHHHHHHH
Confidence 1999998765554444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=138.96 Aligned_cols=170 Identities=18% Similarity=0.215 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHh---cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHH-HhhhcCCchHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGES---LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERPSFIA 219 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr-~~~k~~~gr~~~~~ 219 (358)
+.+|.+++..++...+++++..++|.|+++ +|++..+++++.+.+.++..++++++|+++|| + |||+.+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~------G~~~~l~ 83 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVW------GTKKTMV 83 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc------chHHHHH
Confidence 356777777888788889999999999875 79999999999999999999999999999999 7 7778888
Q ss_pred HHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcc---hHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 220 ITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH---MGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 220 ~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~---~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
++.++.+++.+++. ..+...+++.+++.|++.|...+...++++|.+++++ |++++++.+.+.++|+. +||++.|
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~-ig~~l~g 162 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF-ISPLLAG 162 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH-HHHHHHH
Confidence 88888888887776 3445566677788899998888899999999998764 88999999999999995 8999999
Q ss_pred HHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 296 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 296 ~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
++.++.+ |++.|++.++.++++.+.
T Consensus 163 ~l~~~~g------------~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 163 VIAENYG------------YHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHhcC------------hHHHHHHHHHHHHHHHHH
Confidence 9999877 999999988766665443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=136.46 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=137.0
Q ss_pred HHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~ 226 (358)
...++..++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+ +||+.+..+..+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~ 91 (406)
T PRK11551 18 GLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI------GRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCchhHHHHHHHHH
Confidence 334444444444445556677889999999999999999999999999999999999999 66666776766666
Q ss_pred HHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCC
Q 018271 227 VGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE 305 (358)
Q Consensus 227 ~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~ 305 (358)
++.++.. ..+.+.+.+.+++.|++.+...+...+++.|.+|+++|++++|+.+.+..+|.. ++|.+.+.+.+..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~--- 167 (406)
T PRK11551 92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGA-LASVIGVLAAGDAA--- 167 (406)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccccC---
Confidence 6665555 566677888899999999888888899999999999999999999999999995 78888888777666
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 306 GNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 306 ~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
|+..|++.+++.++..++...+.++
T Consensus 168 ---------~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (406)
T PRK11551 168 ---------WRHIFYVGGVGPLLLVPLLMRWLPE 192 (406)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998877666655444443333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=140.22 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=134.2
Q ss_pred hhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCch
Q 018271 160 GLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPG 238 (358)
Q Consensus 160 ~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~ 238 (358)
...+....|.+.+++|.+..+.+++.+...++..++.++.|+++||+ +||+.+..+.++.+++..++. ..+.+
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF------GARKTLAVFIVIWGVFTGLQAFAGAYV 83 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc------CcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence 34556677888889999999999999999999999999999999999 555556667666666666665 56677
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHH
Q 018271 239 NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 318 (358)
Q Consensus 239 ~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~ 318 (358)
.+++.+++.|++.+...+....++.|.+|+++|++.+|+.+....+|. +++|.+.+.+.+..+ |++.
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~------------~~~~ 150 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG-IIGGPLVGWILIHFS------------WQWA 150 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHhCC------------chHH
Confidence 788889999999998888999999999999999999999999999999 489999999988877 9999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018271 319 FLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~ 337 (358)
|++.+++.++..++.+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 151 FIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred HHHHHHHHHHHHHHhhhee
Confidence 9998887777665554443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-14 Score=135.31 Aligned_cols=197 Identities=10% Similarity=0.078 Sum_probs=138.0
Q ss_pred ccccHHHhhhchhH----HHHHHHHHHhh-hhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHh
Q 018271 133 EDMNILQSVCTLNF----WLLFVAMLCGM-GSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVL 207 (358)
Q Consensus 133 ~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~ 207 (358)
+..+.+++++++.. ++.....++.. .+......+...+.++.|++..++.+.....++.+.+..+++.++.||.
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~- 332 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL- 332 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 44567788776432 22222333333 2334555666678888899999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHH-h---cC---chh---HHHHHHHHHhhhh-cccccHHHHHHHhhCCcchHHHHH
Q 018271 208 HRMGWERPSFIAITLATMSVGHIVVA-S---GF---PGN---LYVGSIIVGVCYG-CQWSLMPTITYEIFGVGHMGTIFN 276 (358)
Q Consensus 208 ~k~~~gr~~~~~~~~~~~~~~~~l~~-~---~~---~~~---l~~~~~l~g~~~g-~~~~~~~~~~~e~f~~~~~g~~~g 276 (358)
|||++++.+..++.+..+++. . .+ .+. .++..+++.++++ +..++.+-+.+|+||++.|.++.+
T Consensus 333 -----gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 333 -----GRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 788888888877777666543 1 11 111 1233334444333 335677889999999999999999
Q ss_pred HHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018271 277 TIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVL 349 (358)
Q Consensus 277 ~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (358)
+....+-+..++. ...+-.+.+..|. ..|.+..+.+++..+..+...+|||++...++.
T Consensus 408 ~~~~~~w~~~fiv-~~~fp~l~~~~g~-------------~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~ 466 (485)
T KOG0569|consen 408 VATAVNWLSNFIV-GFAFPPLQNVIGP-------------YVFILFVIPLAIFLIYLYRYLPETKGRTPYEII 466 (485)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcc-------------hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 9999888888643 4556666666662 577777777888777777778899877655443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=136.58 Aligned_cols=171 Identities=12% Similarity=0.137 Sum_probs=139.6
Q ss_pred HHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHH
Q 018271 150 FVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGH 229 (358)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~ 229 (358)
....+....+...+...+|.+.+++|.+..+.++..+.+.++..++.++.|+++||+ +||+.+..+.++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~------g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS------GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh------CChHHHHHHHHHHHHHH
Confidence 334444455555666789999999999999999999999999999999999999999 66677777777777777
Q ss_pred HHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCc
Q 018271 230 IVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNS 308 (358)
Q Consensus 230 ~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~ 308 (358)
+++. .++...+++.+++.|++.+..++..+.++.|.+++++|++..|+.+....+|. +++|.+++.+.+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~-~~~~~i~~~l~~~~g------ 155 (392)
T PRK10473 83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIP-VLAPVLGHLIMLKFP------ 155 (392)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcC------
Confidence 6665 45566677788899998888888889999999999999999999999988988 478999888887766
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 309 CNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 309 ~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
|++.|++.+++.++..++.....++
T Consensus 156 ------~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 156 ------WQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999988877777665444443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-14 Score=136.41 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=135.8
Q ss_pred hhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hc
Q 018271 157 MGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SG 235 (358)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~ 235 (358)
......+...+|.+.+++|.+..+.++.++++.++..++.+++|+++||+ |||+.+..+..+.+++.++.. .+
T Consensus 29 ~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~------Grr~~l~~~~~~~~~~~~~~~~a~ 102 (413)
T PRK15403 29 YLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI------GRRPVLITGALIFTLACAATLFTT 102 (413)
T ss_pred HHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc------CchHHHHHHHHHHHHHHHHHHHcC
Confidence 33445566778888899999999999999999999999999999999999 677777777777777777666 56
Q ss_pred CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccch
Q 018271 236 FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF 315 (358)
Q Consensus 236 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~ 315 (358)
+...+++.+++.|++.+...+..+.++.|.++++++++.+++.+.+..+|. ++||++++.+.+..+ |
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~lg~~l~~~~g------------w 169 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAP-IIGPLSGAALMHFVH------------W 169 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC------------H
Confidence 677788899999998876566667889999999999999999999999998 489999999888776 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 316 MLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 316 ~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
++.|++.+++.+++.+..++..++
T Consensus 170 ~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999988877776554443343
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=133.26 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=119.3
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
..++.++++.+|.+.+..++.......+..+.|.+.++ .|++..+++.+.+...+++.+++++.|+++||..+++ |
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~---~ 284 (379)
T TIGR00881 208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR---R 284 (379)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc---c
Confidence 34667888999988888887777777888899988864 6999999999999999999999999999999864321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH
Q 018271 215 PSFIAITLATMSVGHIVVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
............+....+.. .+.....+..++.|++..+.......+..|.+|+++||++.|+.+....+|+. ++|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~ 363 (379)
T TIGR00881 285 GPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI-LAG 363 (379)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh-hhh
Confidence 12222222222222222221 12223344555666655555556677889999999999999999999999995 899
Q ss_pred HHHHHHHhhcc
Q 018271 292 RIIGYIYDNVA 302 (358)
Q Consensus 292 ~i~g~l~~~~g 302 (358)
.+.|.+.|..|
T Consensus 364 ~~~g~l~~~~g 374 (379)
T TIGR00881 364 LPLGYLADGFG 374 (379)
T ss_pred hhHHHHHHhhc
Confidence 99999999887
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=134.37 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=129.0
Q ss_pred hhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHh-cC
Q 018271 158 GSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-GF 236 (358)
Q Consensus 158 ~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~-~~ 236 (358)
.....+...+|.+.+++|.|.++.+++.+.+.++..++.+..|+++||+ +||.++..+......+...... .+
T Consensus 5 ~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~------grr~~~~~~~~~~~~~~~~~~~~~~ 78 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA------FKRWFLFGSLATFAAAAGRLLDPFN 78 (368)
T ss_pred HHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667789999999999999999999999999999999999999999 5555555444444443332232 56
Q ss_pred chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchH
Q 018271 237 PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFM 316 (358)
Q Consensus 237 ~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~ 316 (358)
...+++.+++.|++.+.. ......++|.+|+++|+++.++.+.+..+|.. ++|++.+.+.+..| ||
T Consensus 79 ~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~-l~~~~~~~l~~~~g------------Wr 144 (368)
T TIGR00903 79 YEWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGII-FALAAGLKIYTAGG------------LQ 144 (368)
T ss_pred HHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccc------------hH
Confidence 777889999999998853 44555668999999999999999999999995 88999999988777 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018271 317 LSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 317 ~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
+.|++.+++.++..++.++..++
T Consensus 145 ~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 145 LLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999888887776665555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=131.37 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=104.9
Q ss_pred hhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHH-HHHh-c
Q 018271 159 SGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHI-VVAS-G 235 (358)
Q Consensus 159 ~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~-l~~~-~ 235 (358)
.......++|.+.+ +.|++..+.+++.+...++..+++++.|+++||+ +|+..+.++..+..+..+ ++.. .
T Consensus 253 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~------g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (405)
T TIGR00891 253 YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL------GRRKAYVCSLLAGQLLIIPVFAIGA 326 (405)
T ss_pred HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchhhhHHHHHHHHHHHHHHHHhCC
Confidence 33455667887776 5699999999999999999999999999999999 444555555444322222 2222 2
Q ss_pred CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC
Q 018271 236 FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 303 (358)
Q Consensus 236 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~ 303 (358)
+...+.+..++.+++.++.++..+.++.|.+|+++||+++|+.+....+|+. ++|++.|.+.|+.|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 327 NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGA-LAPIIGALLAQRLDE 393 (405)
T ss_pred chHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHH-HHHHHHHHHHHhccc
Confidence 3333444446666666777778889999999999999999999999999995 899999999999886
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-14 Score=135.50 Aligned_cols=178 Identities=12% Similarity=0.111 Sum_probs=126.9
Q ss_pred HHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHH
Q 018271 148 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSV 227 (358)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~ 227 (358)
..++.+++.....+.+...+|.+.+++|++..+.++..+...++..++.++.|+++||+ +||+.+..+.++.++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 40 LSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY------GPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHHHH
Confidence 33444444444445666678889899999999999998999999999999999999999 666667777777777
Q ss_pred HHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCC
Q 018271 228 GHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG 306 (358)
Q Consensus 228 ~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~ 306 (358)
+.++.. ..+...+++.+++.|++.+... ....+++|.+|+++||++.|+.+....+|+. +++.+.+.+.+.....
T Consensus 114 ~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~-~~~~~~~~i~~~~~~~-- 189 (476)
T PLN00028 114 AVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGG-VTQLLMPLVFPLIKDA-- 189 (476)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc--
Confidence 766665 4566667777888898877543 3456789999999999999999877777664 5555555443321000
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 307 NSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 307 ~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
.+.+..+||+.|++.+++.++..++.+++
T Consensus 190 -~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 190 -GAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred -CCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00011239999999998887776555444
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-13 Score=126.05 Aligned_cols=174 Identities=11% Similarity=0.074 Sum_probs=126.4
Q ss_pred hhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 140 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
.+++++++.+....++..........++|.+.+ ++|.+..+.+++.........++.++.|+++||+ +||..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------g~~~~~ 268 (375)
T TIGR00899 195 LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF------GKRRLM 268 (375)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------cchhHH
Confidence 345566665555555444444455567777764 6799998888888877778888999999999999 455555
Q ss_pred HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 219 AITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 219 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
.++.++..+...++. .++.+.+++..++.|++.+...+....+..|.+|+ +++++.|+.+....+|.. ++|.+.|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~-~g~~~~g~~ 346 (375)
T TIGR00899 269 LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWI-IAGSVGGIL 346 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 555444444433333 33444455566777888777777777888898875 567999999998889984 899999999
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
.|..| |+..|++.+++.+++.+..
T Consensus 347 ~~~~g------------~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 347 AERWS------------YHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHhcc------------chhHHHHHHHHHHHHHHHH
Confidence 99887 9999999888887777654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-14 Score=133.21 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchh-----hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA-----INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~-----a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
+.+..+++..++...........+|.+.+++|.+..+ .++..++..++..++.++.|+++||+ +||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~ 87 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK------GRKIML 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------CcHHHH
Confidence 3555667777777666677788899999999988654 37788889999999999999999999 666667
Q ss_pred HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 219 AITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 219 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
..+.++.+++.+++. .++.+.+++.+++.|++.+ ..+....++.+.+++++|+++.|+.+.+..+|. +++|.+.|.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l 165 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGA-LLGPLAGGLL 165 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 777777776666655 4566677778888888654 456666788899999999999999999999998 4899999999
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
.+..+ |++.|++.+++.+++.+..+++.+
T Consensus 166 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 166 ADSYG------------LRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred HHHhC------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98877 999999998887777665554443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=127.33 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=127.3
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHH-hcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATV-NNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
.++.++++.++.+.+..++......... .+.|.+.++ +|.+..+.+.+.+...++..++.++.+++.||+ +|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~ 276 (365)
T TIGR00900 203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF------KR 276 (365)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ch
Confidence 4567788888877777766666655555 788888886 699999999999999999999999999999998 55
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcC-chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 215 PSFIAITLATMSVGHIVVA-SGF-PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~-~~~-~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
+..+..+..+.++...++. ..+ .+.+++..++.|++.+...+....++.|.+|+++||+.+|+.+....+|.. ++|.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~g~~ 355 (365)
T TIGR00900 277 MALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP-LGLI 355 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 6666665555555555544 332 445566778889988888888889999999999999999999999999995 8999
Q ss_pred HHHHHHhhcc
Q 018271 293 IIGYIYDNVA 302 (358)
Q Consensus 293 i~g~l~~~~g 302 (358)
+.|.+.|..|
T Consensus 356 ~~g~l~~~~g 365 (365)
T TIGR00900 356 LAGPLADHLG 365 (365)
T ss_pred HHHHHHHHcC
Confidence 9999998754
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-14 Score=133.92 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~ 225 (358)
+...++.++......+.....+|.+.+++|.+..+.++..+...++..++.++.|+++||+ +||+.+..+.++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~------g~r~~l~~~~~~~ 93 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF------GRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHH
Confidence 4455555555555555666677888889999999999999999999999999999999999 7778888888888
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCC
Q 018271 226 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 304 (358)
Q Consensus 226 ~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~ 304 (358)
+++.++.. ..+.+.+++.+++.|++.+..++....++.|.+|+++|+++.|+...+..+|.. ++|.+.+.+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-~~~~l~~~l~~~~~-- 170 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNI-IAAYFMPSFAEAYG-- 170 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHH-HHHHHHHHHcccCC--
Confidence 88777666 566777888999999999988888899999999999999999999999999994 78888888888776
Q ss_pred CCCccccccchHHHHHHHHH
Q 018271 305 EGNSCNGTHCFMLSFLIMAS 324 (358)
Q Consensus 305 ~~~~~~g~~~~~~~f~~~~~ 324 (358)
|++.|++...
T Consensus 171 ----------w~~~f~i~~~ 180 (426)
T PRK12307 171 ----------WRAAFFVGLL 180 (426)
T ss_pred ----------HHHHHHHHHH
Confidence 9999987543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-14 Score=132.01 Aligned_cols=171 Identities=12% Similarity=0.135 Sum_probs=138.4
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
+-+|...+.+++.......+...+|.+.+++|+|.++.++..+...++..++.++.|+++||+ +||+.+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~------g~r~~~~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII------PLKRQLIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHH
Confidence 345666666666655556677788999999999999999999999999999999999999999 66667777777
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhcc
Q 018271 224 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 224 ~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g 302 (358)
+.+++.++.. .++...+++.+++.|++.+...+....++.|.+|+++|+...++.+....+|+. ++|.+.+.+.+...
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~ 159 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGM-IFPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc
Confidence 7777766666 456667778889999998888888889999999999999999998888888884 78888888876433
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 303 SGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 303 ~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
+ |++.|.+.+++.++..++
T Consensus 160 g-----------w~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 160 E-----------WYWVYACIGLVYVAIFIL 178 (394)
T ss_pred c-----------HHHHHHHHHHHHHHHHHH
Confidence 2 999999888776665544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=129.41 Aligned_cols=178 Identities=15% Similarity=0.085 Sum_probs=126.2
Q ss_pred HhhhchhHHHHHH-HHHHhhhhhhhHHhcHHHHHHhcCCCchh----hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 139 QSVCTLNFWLLFV-AMLCGMGSGLATVNNISQIGESLGYPTSA----INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~G~s~~~----a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
+.+++++++...+ ..++.......+..+++.+.++.+.+..+ .+.+.++..++..++++..|+++||+ +
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~------g 286 (408)
T PRK09874 213 TSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI------G 286 (408)
T ss_pred HhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------c
Confidence 3455666554332 22222233334556677777765433222 34555667788889999999999999 5
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 214 RPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 214 r~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
|+..+..+..+..+..+.+. ..+.+.+++..++.|++.+...+.....+.+..+++++|+.+|+.+....+|.. +||.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~gp~ 365 (408)
T PRK09874 287 PEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNV-TGPL 365 (408)
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHH-hhHH
Confidence 55556666555555555444 344555666777889888888888888888888989999999999999999985 8999
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
++|.+.+..| |+..|++.+++.+++++..+.
T Consensus 366 ~~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 366 MGAAISANYG------------FRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHhhcc------------hhHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 999999999888887765533
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-13 Score=130.30 Aligned_cols=181 Identities=12% Similarity=0.152 Sum_probs=124.8
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHH-HhcCCCchhhHHHHH-HHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVS-LWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~G~s~~~a~~~~~-~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
.++.++++..|.+.+..++..........+.++++ ++.|++..+.+++.. ...++.++|.+++|+++||++ +
T Consensus 215 l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g------~ 288 (491)
T PRK11010 215 LRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLS------L 288 (491)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------H
Confidence 45566677777665555555444445556666665 467999999999874 566899999999999999994 4
Q ss_pred HHHHHHHHHHHHHHHH---HHHhc--CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 215 PSFIAITLATMSVGHI---VVASG--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~---l~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
+..+.++.++.++..+ ++... +...+....++..++.|...+...++..++.+++..++.+|+.+....+|.. +
T Consensus 289 ~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~-~ 367 (491)
T PRK11010 289 FRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV-Y 367 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH-H
Confidence 3334433333333222 22221 2222333344444444444455678888899989999999999999999985 6
Q ss_pred hHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 290 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 290 gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
++++.|++.|..| |+..|.+.+++++++.+.....
T Consensus 368 ~~~~~G~l~~~~G------------~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 368 VGPVAGWFVEAHG------------WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHhC------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 7778999999887 9999999998888887665544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=134.86 Aligned_cols=176 Identities=15% Similarity=0.195 Sum_probs=138.4
Q ss_pred Hhhhch-hHHHHHHHHHHhhhhhhhHHhcHHHHH-HhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHH-HhhhcCCchH
Q 018271 139 QSVCTL-NFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERP 215 (358)
Q Consensus 139 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr-~~~k~~~gr~ 215 (358)
+.++++ .+|.+++..++...+++.+..+++.++ +++|++.+++++..+.+........+++|+++|| + |||
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~------G~r 88 (500)
T PRK09584 15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVL------GTK 88 (500)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chH
Confidence 344665 588888888888888899999999887 4789999888888777766666666789999999 6 666
Q ss_pred HHHHHHHHHHHHHHHHHHh-c-CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcc--hHHHHHHHHHHhhhHHHHHhH
Q 018271 216 SFIAITLATMSVGHIVVAS-G-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH--MGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~-~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~--~g~~~g~~~~~~~ig~~i~gp 291 (358)
..+..+.++.+++.+++.. . ....+++..++.|++.|...+...+++.|.||+++ +..++++.+.+.++|+. +||
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~-~gp 167 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF-FSM 167 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH-HHH
Confidence 7777787777777766653 2 23345566778889888888888899999998653 45678888999999994 899
Q ss_pred HHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 292 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 292 ~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
++.|++.+..| |++.|++.++..+++.+..
T Consensus 168 ~i~g~l~~~~g------------~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 168 LATPWLAAKYG------------WSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHHhhC------------HHHHHHHHHHHHHHHHHHH
Confidence 99999999887 9999998877666665443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-14 Score=132.42 Aligned_cols=175 Identities=14% Similarity=0.167 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~ 225 (358)
.+......++.......+...+|.+.+++|.|..+.++..+...++..++.++.|+++||+ +||+.+..+..+.
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~------grr~~~~~~~~~~ 83 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV------GRRPVILVGMSIF 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc------CChHHHHHHHHHH
Confidence 3444444445555555667788999999999999999999999999999999999999999 6666777777777
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCC
Q 018271 226 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 304 (358)
Q Consensus 226 ~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~ 304 (358)
.++.++.. ..+...+++.+++.|++.+...+....+..|.++.++++.+.++.+.+..++. +++|.+.+.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~~g-- 160 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSP-LLAPLIGGLLTTLFG-- 160 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccC--
Confidence 76666655 45666778888999988877666777788899998999999999999999888 489999999988777
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 305 EGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 305 ~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
|++.|++.+++.++..++..+..++
T Consensus 161 ----------~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (394)
T PRK11652 161 ----------WRACYLFLLLLGAGVTFSMARWMPE 185 (394)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999998887766555444343333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-14 Score=133.75 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=134.0
Q ss_pred hhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-h
Q 018271 156 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 234 (358)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~ 234 (358)
............|.+.+++|++..+.+++.+...++..++.++.|+++||+ +||..+..+.++..++.++.. .
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~~~~~~~~~~ 102 (398)
T TIGR00895 29 DGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI------GRKRVLLWSILLFSVFTLLCALA 102 (398)
T ss_pred HHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHc
Confidence 333344556678888899999999999999999999999999999999999 666777777777777666655 4
Q ss_pred cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccc
Q 018271 235 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 314 (358)
Q Consensus 235 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~ 314 (358)
.+...+++..++.|++.+..++...+++.|.+|+++|+++.|+.+.+..+|.. ++|.+.|.+.+..+
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~g------------ 169 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAA-VGGFLAGWLIPVFG------------ 169 (398)
T ss_pred cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHH-HHHHHHHHHhhccc------------
Confidence 56667778889999999988999999999999999999999999999999994 89999999998877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018271 315 FMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 315 ~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
|+..|++.+++.++..++.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhC
Confidence 99999888766665555444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.6e-13 Score=126.60 Aligned_cols=155 Identities=12% Similarity=0.025 Sum_probs=103.9
Q ss_pred hhchhHHHHH-HHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 141 VCTLNFWLLF-VAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
.++++.|... ...++.....+....|.|.|.++ +|++..+++++.....+++.++.++.|+++||++ ||+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g------~r~~~ 307 (434)
T PRK15075 234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIG------RRPVL 307 (434)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------chHHH
Confidence 3444555433 23333444556778899999886 6999888888888899999999999999999994 44444
Q ss_pred HHHHHHHHHHH-HH--HHhcCc--hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHH-HhhhHHHHHhHH
Q 018271 219 AITLATMSVGH-IV--VASGFP--GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAI-ASPVGSYVCSVR 292 (358)
Q Consensus 219 ~~~~~~~~~~~-~l--~~~~~~--~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~-~~~ig~~i~gp~ 292 (358)
..+..+..+.. .. ....+. .......++.+++.+...+..+.+..|.+|++.|+++.|+.+. +..+++. ++|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~-~~p~ 386 (434)
T PRK15075 308 IAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGG-FTPA 386 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhh-hHHH
Confidence 44333322211 11 111222 2233334455666666666667889999999999999999744 4444464 6899
Q ss_pred HHHHHHhhcc
Q 018271 293 IIGYIYDNVA 302 (358)
Q Consensus 293 i~g~l~~~~g 302 (358)
+.|++.|..|
T Consensus 387 ~~g~i~~~~g 396 (434)
T PRK15075 387 ISTWLIHVTG 396 (434)
T ss_pred HHHHHHHhcC
Confidence 9999999877
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-14 Score=132.93 Aligned_cols=161 Identities=9% Similarity=0.032 Sum_probs=131.6
Q ss_pred hhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCc
Q 018271 159 SGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFP 237 (358)
Q Consensus 159 ~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~ 237 (358)
....+...+|.+.+++|.+..+.++..+.+.++..++.++.|+++||+ +||+.+..+..+..++.++.. .++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~ 101 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI------GRRPVMLAGVAFFILTCLAILLAQSI 101 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHHHHHHHHHHHHccH
Confidence 344566678888899999999999999999999999999999999999 666777777777776666655 5666
Q ss_pred hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHH
Q 018271 238 GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFML 317 (358)
Q Consensus 238 ~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~ 317 (358)
+.+++.+++.|++.+...+..+..+.|.++++++++..++......++. .++|.+.+.+.+..+ |++
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~~~------------w~~ 168 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAP-LLGPLVGAALIHVLP------------WRG 168 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccC------------ccH
Confidence 6777888999988887777788899999999999999999887777887 489999999988776 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018271 318 SFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 318 ~f~~~~~~~~~~~~~~~~~~~ 338 (358)
.|++.+++.+++.+..+...+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T PRK15402 169 MFVLFAALAALSFFGLWRAMP 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 999988888777655444333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6e-13 Score=126.39 Aligned_cols=157 Identities=12% Similarity=0.127 Sum_probs=121.1
Q ss_pred hhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCc
Q 018271 159 SGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFP 237 (358)
Q Consensus 159 ~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~ 237 (358)
.......+++.+.++.|++ ..+...+.+.++..+++++.|++.||+ ++++.+..+..+.+++.+++. .++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (399)
T PRK05122 231 GFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRL------GGLRVAIVSLLVEILGLLLLWLAPSP 302 (399)
T ss_pred HHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3344556778777777774 456667788889999999999999999 555556666666666655554 4444
Q ss_pred hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHH
Q 018271 238 GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFML 317 (358)
Q Consensus 238 ~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~ 317 (358)
..+++..++.|++.+..++.......|.+|+++||+++|+.+....+|.. ++|++.|.+.+..| |+.
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~g------------~~~ 369 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLG-ITGPLAGLVASWFG------------YPS 369 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC------------HHH
Confidence 55566678888888877777777788999999999999999999999985 78889999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018271 318 SFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 318 ~f~~~~~~~~~~~~~~~~~ 336 (358)
.|++.+++.+++.++.+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 370 IFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999888888776555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-14 Score=131.65 Aligned_cols=181 Identities=15% Similarity=0.179 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHH-HHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQ-IGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
.+|..++.+++.....+.+..++|+ +.+++|+|..+.+++.+...++..++.++.|+++||+ +||+.+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF------GPRYTTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh------CchHHHHHHHH
Confidence 4677788888777777888889996 7778999999999999999999999999999999999 66677777878
Q ss_pred HHHHHHHHHH-hc-CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc
Q 018271 224 TMSVGHIVVA-SG-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 301 (358)
Q Consensus 224 ~~~~~~~l~~-~~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~ 301 (358)
+.+++.+++. .. +.+.+++.+++.|++.+ .+.....++.|.+|+++|++..++......+|.. +++.+.+.+.+..
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~l~~~~ 153 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGG-VAQFVMPPIIGSL 153 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHH-HHHHHHHHHHHHH
Confidence 7777777666 45 66777788889998854 4556678899999999999999998876666663 5666665555422
Q ss_pred cCCCCCccccccchHHHHHH-HHHHHHHHHHHHHH
Q 018271 302 ASGEGNSCNGTHCFMLSFLI-MASVAFVGCLVAFL 335 (358)
Q Consensus 302 g~~~~~~~~g~~~~~~~f~~-~~~~~~~~~~~~~~ 335 (358)
.... ...+..+|++.|++ .+++..+..++.+.
T Consensus 154 ~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 186 (366)
T TIGR00886 154 IFGA--GLPAHLAWGWAFVIVPAGILLLPALLIFF 186 (366)
T ss_pred Hhcc--cccccccccchhHHHHHHHHHHHHHHHHH
Confidence 1000 00011139998844 34444444433333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-15 Score=138.73 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=135.6
Q ss_pred HHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHH
Q 018271 153 MLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV 232 (358)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~ 232 (358)
+++.......+....|.+.+++|++..+.+++.+...++..++.++.|+++||+ +||+.+..+..+..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~ 77 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS------NPRVFLPIGLILCAIVNLFF 77 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh------CCeehhHHHHHHHHHHHHHH
Confidence 344444555677788888889999999999999999999999999999999999 66667777777777777766
Q ss_pred H-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH-HHHHHHHhhccCCCCCccc
Q 018271 233 A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV-RIIGYIYDNVASGEGNSCN 310 (358)
Q Consensus 233 ~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp-~i~g~l~~~~g~~~~~~~~ 310 (358)
. ..+.+.+++.+++.|++.+...+...+++.|.+|+++|++..|+.+.+..+|.. ++| .+.+.+.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~-------- 148 (379)
T TIGR00881 78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGG-LLPPLVLFGIAELYS-------- 148 (379)
T ss_pred HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHH-HHHHHHHHHHHhcCC--------
Confidence 6 566677888899999999988999999999999999999999999999999995 778 45556656555
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 311 GTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 311 g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
|++.|++.+++.++..+..+++.+
T Consensus 149 ----~~~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T TIGR00881 149 ----WHWVFIVPGIIAIIVSLICFLLLR 172 (379)
T ss_pred ----chhHHHHHHHHHHHHHHHHheeeC
Confidence 999999888777766555544443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=118.34 Aligned_cols=178 Identities=11% Similarity=0.064 Sum_probs=141.7
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
..++|++..|.+.+.+.+.+..+|..+.|+|.++.|.|+|..+++.++++..+.+....+...++.+|.. .+|+.
T Consensus 202 ~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~-----n~r~~ 276 (395)
T COG2807 202 RKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSK-----NQRPL 276 (395)
T ss_pred cccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc-----ccchH
Confidence 3467889999999999999999999999999999999999999999999999999999999999999852 56666
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCC-cchHHHHHHHHHHhhhHHHHHhHHHHHH
Q 018271 218 IAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-GHMGTIFNTIAIASPVGSYVCSVRIIGY 296 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~-~~~g~~~g~~~~~~~ig~~i~gp~i~g~ 296 (358)
......++.++.+.+........+...+++|++.|+.+++....+.+.... +.-+.-.|+.+..+.+=+. +||.+.|+
T Consensus 277 ~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa-~GP~l~G~ 355 (395)
T COG2807 277 VVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAA-FGPWLFGF 355 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHh-hhhhhHhH
Confidence 666666666666655422222333346899999999999988888877654 4456777777666666553 79999999
Q ss_pred HHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 297 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 297 l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
+.|..|+ |+..++..+.+.++..+.
T Consensus 356 lhDa~gs-----------w~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 356 LHDATGS-----------WSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHhcCC-----------hHHHHHHHHHHHHHHHHH
Confidence 9999998 999988777766655543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-13 Score=125.59 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=120.5
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
++.+|++.+|.+.+..++.....+....++|.+.++.|++..+.+.+.+...++.++++++.|+++||++ +|+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~-----~~~~~ 265 (355)
T TIGR00896 191 VRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVK-----DQRGI 265 (355)
T ss_pred chhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc-----cchHH
Confidence 3456788888777666666667777888999999999999999999999999999999999999999994 34444
Q ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhC-CcchHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 218 IAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-~~~~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
+.++..+.+++.+.+. ..+.. .....++.|++.+..++.....+.+..+ ++++++.+|+.+..+.++.. ++|.+.|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~gp~~~G 343 (355)
T TIGR00896 266 VAVLAVLQLVGLCGLLFAPMHG-LWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAA-LGPLFVG 343 (355)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5555555555544443 22222 2234567888888888776666665554 46678999999888888884 7999999
Q ss_pred HHHhhccC
Q 018271 296 YIYDNVAS 303 (358)
Q Consensus 296 ~l~~~~g~ 303 (358)
++.|+.|+
T Consensus 344 ~l~~~~g~ 351 (355)
T TIGR00896 344 VLHDISGN 351 (355)
T ss_pred HHHHHhcc
Confidence 99999875
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-13 Score=132.05 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=109.8
Q ss_pred hHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCch-
Q 018271 162 ATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPG- 238 (358)
Q Consensus 162 ~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~- 238 (358)
....++|.+++ ++|++..+++++.+...++..+|+++.|+++||+ +|+..+.++..+..+..+++. ..+..
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL------GTRKAYVCSLLISQLLIIPVFAIGGANV 366 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHhhccccHH
Confidence 35568899986 7899999999999999999999999999999999 555555555554444433332 22222
Q ss_pred -hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHH
Q 018271 239 -NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFML 317 (358)
Q Consensus 239 -~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~ 317 (358)
.+....++.++...+..+..+.++.|.+|+++||+.+|+.+....+|+. +||++.|.+.|+.| |+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-lgp~l~g~l~~~~g------------~~~ 433 (496)
T PRK03893 367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGA-LAPILGALIAQRLD------------LGT 433 (496)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHH-HHHHHHHHHhccCC------------hHH
Confidence 2223333333333344567788899999999999999999999999985 89999999999887 888
Q ss_pred HHHHHHHHHHHHH
Q 018271 318 SFLIMASVAFVGC 330 (358)
Q Consensus 318 ~f~~~~~~~~~~~ 330 (358)
.+...++++.+.+
T Consensus 434 ~~~~~~~~~~~~~ 446 (496)
T PRK03893 434 ALASLSFSLTFVV 446 (496)
T ss_pred HHHHHHHHHHHHH
Confidence 8766655444433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-14 Score=135.97 Aligned_cols=177 Identities=16% Similarity=0.126 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
+.++.+.+.+.+.......+..+.|.+.+ .|++.++.++..+...++..++.++.|+++||+ +||..+..+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~~~~~~~~~~ 99 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS------NPRVFLPAGLI 99 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc------CCceehHHHHH
Confidence 33444444433333333334556676654 699999999999999999999999999999999 55555666666
Q ss_pred HHHHHHHHHH-h----cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 018271 224 TMSVGHIVVA-S----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 298 (358)
Q Consensus 224 ~~~~~~~l~~-~----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~ 298 (358)
+.+++.++.. . .+...+.+.+++.|++.+..++.....+.|.+|+++||++.|+.+.+..+|+. ++|++.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~l~~~~~ 178 (438)
T TIGR00712 100 LSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG-IPPLLVLLGM 178 (438)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhH-HHHHHHHHHH
Confidence 6666665544 2 12334556678888888888887888899999999999999999999999985 6777777655
Q ss_pred hhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 299 DNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 299 ~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
+...+ |+..|++.++++++..++.+++.++
T Consensus 179 ~~~~~-----------w~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 179 AWFND-----------WHAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHhhh-----------hHHHHHHHHHHHHHHHHHHHHhccC
Confidence 53322 9999999988888776555555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-12 Score=123.26 Aligned_cols=172 Identities=14% Similarity=0.110 Sum_probs=126.1
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
.+.++++.++......++.........+++|.+.++.|.+...++.+.+...++..++++..|+++||+ +++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------~~~~~ 267 (381)
T PRK03633 194 WPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRF------GRLLV 267 (381)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc------CcHHH
Confidence 345667776655443433333334455678999998899998999999999999999999999999999 55566
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 218 IAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
+..+..+..++...+. . ....+....+.|++.+...+...+.+.|..|+++++...+..+....+|+. +||.+.|++
T Consensus 268 l~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~-igp~~~G~l 344 (381)
T PRK03633 268 LRVQVFVVILGSIAML-S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSL-LGPSFTAML 344 (381)
T ss_pred HHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6656555555444332 1 223334455666666666677777788988888888888888888899995 899999999
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
.|+++ +++.|.+.+.+.++..
T Consensus 345 ~~~~g------------~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 345 MQNYS------------DNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHhC------------ccHHHHHHHHHHHHHH
Confidence 99987 8899988877766554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=133.81 Aligned_cols=162 Identities=14% Similarity=0.137 Sum_probs=131.0
Q ss_pred hhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-h
Q 018271 156 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 234 (358)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~ 234 (358)
..+..+.+...+|.+.+++|++..+.++..+.+.++..++.++.|+++||+ |||+.+.++..+.+++.++.. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~------G~r~~~~~~~~~~~~~~~~~~~~ 88 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF------GPRAVAMLGGILYGLGFTFYAIA 88 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc------CccchhHHhHHHHHHHHHHHHHH
Confidence 333455666788999999999999999999999999999999999999999 566667777777777777666 5
Q ss_pred cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccc
Q 018271 235 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHC 314 (358)
Q Consensus 235 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~ 314 (358)
++.+.+++.+++.|++.+..++.....+.|.++ ++|+++.++...+..+|.. +++++.+.+.+..+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~------------ 154 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSF-ILSPLITSVINLEG------------ 154 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHh-HHHHHHHHHHhccc------------
Confidence 666777788889999988777777777888887 6799999999999999985 55666777777666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018271 315 FMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 315 ~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
|++.|++.+++.++.++..+++.
T Consensus 155 ~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 155 VPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999888877766655443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=126.83 Aligned_cols=169 Identities=21% Similarity=0.309 Sum_probs=143.6
Q ss_pred HHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~ 226 (358)
+.+....++............|.+.++.|.+..+.++..+...++..++.++.|+++||+ +||+.+..+..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~------g~r~~~~~~~~~~~ 75 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF------GRRRVLLLGLLLFA 75 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------CCchhhHHHHHHHH
Confidence 344555666666667778888999999999999999999999999999999999999999 56667777777777
Q ss_pred HHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCC
Q 018271 227 VGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE 305 (358)
Q Consensus 227 ~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~ 305 (358)
++.++.. .++...+++.+++.|++.+...+...++..|.+|+++|++.+++.+....+|.. ++|.+.+.+.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~--- 151 (352)
T cd06174 76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGAL-LGPLLGGLLAESLG--- 151 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhh---
Confidence 7777666 456677888899999999999999999999999999999999999999999994 89999999999877
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHH
Q 018271 306 GNSCNGTHCFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 306 ~~~~~g~~~~~~~f~~~~~~~~~~~~~~~ 334 (358)
|+..+++.+.+.+++.+...
T Consensus 152 ---------~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 152 ---------WRWLFLILAILGLLLALLLL 171 (352)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777765543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=133.25 Aligned_cols=168 Identities=13% Similarity=0.165 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHH-HhhhcCCchHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERPSFIAIT 221 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr-~~~k~~~gr~~~~~~~ 221 (358)
+.+|.+++..++-.+++|++...++.|++ ++|++.+++++..+.+.....+..+++|+++|| + |||+.+.++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~------G~r~~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL------GTKRTIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhcc------chHHHHHHH
Confidence 46777777778888888988888888765 679999999999999888888888999999999 7 778888888
Q ss_pred HHHHHHHHHHHH-hcCch-hHHHHHHHHHhhhhcccccHHHHHHHhhCCc--chHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 222 LATMSVGHIVVA-SGFPG-NLYVGSIIVGVCYGCQWSLMPTITYEIFGVG--HMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 222 ~~~~~~~~~l~~-~~~~~-~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~--~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
.++..++.+++. ..+.. .+++.+++.|++.|...+...+++.|.||++ +|+.++++.+.+.++|+. +||.++|++
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~-~g~~l~g~l 166 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSL-ISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence 888888887766 33323 3456788889999999889999999999887 458899999999999995 899999999
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
.++.| |++.|++.++..+++.
T Consensus 167 ~~~~g------------w~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 167 ADKFG------------YSVTYNLCGAGLIIAL 187 (489)
T ss_pred HHhhC------------hHHHHHHHHHHHHHHH
Confidence 99887 9999998765444444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-12 Score=123.31 Aligned_cols=176 Identities=15% Similarity=0.119 Sum_probs=126.6
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHH-HHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWS-IWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~-i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.+|++.+|......++..........+.+.+.+|.|++.++.+++..... +...+|.++.|++.||+ +++
T Consensus 201 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~------g~~ 274 (390)
T TIGR02718 201 LFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA------GLW 274 (390)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh------hHH
Confidence 56778888888777777776666666777888888999999999999888776 46678899999999999 454
Q ss_pred HHHHHHHHHHHHHHH-HHHh------cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCC-cchHHHHHHHHHHhhhHHH
Q 018271 216 SFIAITLATMSVGHI-VVAS------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-GHMGTIFNTIAIASPVGSY 287 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~-l~~~------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~-~~~g~~~g~~~~~~~ig~~ 287 (358)
..+..+..+..+..+ .+.. .+...++...++.+++.+..++.......+..++ +.+|+.+++.+....+|..
T Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~ 354 (390)
T TIGR02718 275 RTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL 354 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH
Confidence 555544443322222 1111 1111222333444555666666667777777776 7899999999999999995
Q ss_pred HHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHH
Q 018271 288 VCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL 331 (358)
Q Consensus 288 i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~ 331 (358)
++|.++|.++|..| |+..|+..+++.+++.+
T Consensus 355 -~g~~~~G~l~~~~G------------~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 355 -IASSIAGYLTDRFG------------YAGGFLSGTVLAVLAIL 385 (390)
T ss_pred -HHHHHHHHHHHHHc------------cHHHHHHHHHHHHHHHH
Confidence 89999999999887 99999888777666553
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-14 Score=131.90 Aligned_cols=160 Identities=11% Similarity=0.192 Sum_probs=136.0
Q ss_pred hhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchh
Q 018271 161 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 239 (358)
Q Consensus 161 ~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~ 239 (358)
..+...+|.+.+++|.+..+.++..+...++..+++++.|+++||+ +||+.+..+.++.+++.+++. .++...
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF------GRKPVILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc------CChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 4566788999999999999999999999999999999999999999 667777778777777777666 556667
Q ss_pred HHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHH
Q 018271 240 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 319 (358)
Q Consensus 240 l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f 319 (358)
+++.+++.|++.+...+...+++.|.+++++|++..++.+.+..+|. +++|.+++.+.+..+ |++.|
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~------------~~~~~ 148 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP-LLAPIIGGWLLVWFS------------WHAIF 148 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC------------hHHHH
Confidence 77888999999888888888999999999999999999999999999 489999999999877 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018271 320 LIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~ 339 (358)
++.+.+.++..++..+..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 149 WVLALAAILAAALVFFFIPE 168 (377)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 98888877776555444333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=130.79 Aligned_cols=170 Identities=14% Similarity=0.151 Sum_probs=139.0
Q ss_pred HHHHHHHHHhhhhhhhHHhcHHHHH-HhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 225 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~ 225 (358)
+.++...++...+.+.....++.+. +++|+|..+.++..+...+...+.+++.|+++||+ +||+.+..+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~------g~k~~l~~~~~~~ 86 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF------GAKPMIVTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh------CchHHHHHHHHHH
Confidence 5555666666666666777777654 57899999999999999999999999999999999 6777788888888
Q ss_pred HHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCC
Q 018271 226 SVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 304 (358)
Q Consensus 226 ~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~ 304 (358)
.++.+++. .++.+.+++.+++.|++.+...+...+++.|.+|+++|++++|+.+....+|. .+||.++|.+. ..+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~-~ig~~l~g~l~-~~g-- 162 (400)
T PRK11646 87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGA-VIGALLGSWLL-QYD-- 162 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-Hhh--
Confidence 88777766 55666777888899988877777778889999999999999999999999999 48999999998 555
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 305 EGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 305 ~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
|++.|++.+.+.++.+++..+.
T Consensus 163 ----------~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 163 ----------FRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887777665544333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=134.82 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.+..+++.+++...........+|.+.+++|.+..+.+++.+...++..++.++.|+++||+ +||+.+..+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~ 94 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY------GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHH
Confidence 45556666666666666666778888899999999999999999999999999999999999 667777777777
Q ss_pred HHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC
Q 018271 225 MSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 303 (358)
Q Consensus 225 ~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~ 303 (358)
.+++.++.. ..+.+.+++.+++.|++.++.++....++.|.+++++|+.+.++.+.+..+|.. ++|.+.+.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~- 172 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAV-VAAQVYSLVVPVWG- 172 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC-
Confidence 777777666 556677888899999999988888899999999999999999999999999994 89999999988776
Q ss_pred CCCCccccccchHHHHHHHHH
Q 018271 304 GEGNSCNGTHCFMLSFLIMAS 324 (358)
Q Consensus 304 ~~~~~~~g~~~~~~~f~~~~~ 324 (358)
|++.|++.+.
T Consensus 173 -----------w~~~f~~~~~ 182 (496)
T PRK03893 173 -----------WRALFFIGIL 182 (496)
T ss_pred -----------HHHHHHHHHH
Confidence 9999886443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-12 Score=120.06 Aligned_cols=180 Identities=17% Similarity=0.190 Sum_probs=135.7
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc-CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
..+.+|++..|...+..++...+.+...+++.+++++. |+|.+..++....+.+++.+|..+.|+++|| + .|+
T Consensus 204 ~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~-----~~~ 277 (394)
T COG2814 204 LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-G-----PRR 277 (394)
T ss_pred HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-c-----chh
Confidence 46788999999999999998888888888887777755 9999999999999999999999999999999 3 344
Q ss_pred HHHHHHHHHHHHHHHHHH--hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHH
Q 018271 216 SFIAITLATMSVGHIVVA--SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~--~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
.+ .....+.++..+.+. ..+.....+..++.|+.............++ .-++.+..+.++.....++|.. .|..+
T Consensus 278 ~l-~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia-~GA~l 354 (394)
T COG2814 278 AL-IAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIA-LGAAL 354 (394)
T ss_pred HH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHH-HHHHH
Confidence 33 334344444444333 2334444455555666665554444455555 4458889999999888888885 78889
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
+|.++|+.| |....++.+.+.++++++.++..
T Consensus 355 GG~v~~~~g------------~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 355 GGLVLDALG------------YAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHhhc------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 99999999998888886654443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=131.29 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=134.2
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
+.+|.++...+....++|++..++|.|++ ++|++..+++.+.+.+.....++.+++|+++||+. |||+.+.++.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRil-----Grrr~iliG~ 83 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVL-----GNRMAVMLGA 83 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CcHHHHHHHH
Confidence 45677777777778888999999999876 46999999999999999999999999999999982 4555667777
Q ss_pred HHHHHHHHHHHh-c-CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCc--chHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 018271 223 ATMSVGHIVVAS-G-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVG--HMGTIFNTIAIASPVGSYVCSVRIIGYIY 298 (358)
Q Consensus 223 ~~~~~~~~l~~~-~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~--~~g~~~g~~~~~~~ig~~i~gp~i~g~l~ 298 (358)
++.+++.+++.. . +...+++...+.+++.|...+..+++++|.||++ +|.+++++.+.+.++|+. ++|++.|++.
T Consensus 84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~-iap~l~g~L~ 162 (493)
T PRK15462 84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSI-IAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHH-HHHHHHHHHH
Confidence 777777666552 2 2233444444555666666677788999999986 699999999999999995 8999999999
Q ss_pred hhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 299 DNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 299 ~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
+..| |++.|.+.++.++++.+.
T Consensus 163 ~~~G------------w~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 163 EEYS------------WAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred hhhC------------hHHHHHHHHHHHHHHHHH
Confidence 8887 999999877766555543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=130.66 Aligned_cols=185 Identities=17% Similarity=0.183 Sum_probs=133.2
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
...+.+|+++.|.+.+.+++..+.+.++..++|++.++ .++.........+..+...++++++|+++||+ +++
T Consensus 244 ~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRi------G~~ 316 (462)
T PRK15034 244 DQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKF------GGV 316 (462)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhc------Cch
Confidence 35678999999999999999998988899999999876 45544444445566788899999999999999 454
Q ss_pred HHHHHHHHHHHHHHHH-H-Hhc-----CchhHHHHHHHHHhhhhcccccHHHHHHHhhCC--------------------
Q 018271 216 SFIAITLATMSVGHIV-V-ASG-----FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-------------------- 268 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l-~-~~~-----~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~-------------------- 268 (358)
+++.++++.+.+.... + ..+ +...+.+..+...++.|...+....+++++||.
T Consensus 317 ~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~ 396 (462)
T PRK15034 317 RVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREA 396 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence 5555555544443322 1 122 112223333333344444445556666777764
Q ss_pred -cchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 269 -GHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 269 -~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
++.|...|+.+..+.+|++ +-|.+.|...+.+|+ |...|+...+..+++.++.++.+.|
T Consensus 397 ~~~~g~v~G~v~a~G~~Ggf-~~p~~~g~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 397 VTETAAALGFISAIGAVGGF-FIPQAFGMSLNMTGS-----------PVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHHHHHcccc-hhhHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1578999999999999996 668899999999987 9999999999999998888776654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=132.93 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=120.4
Q ss_pred HHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHh-c----Cc
Q 018271 163 TVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-G----FP 237 (358)
Q Consensus 163 ~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~-~----~~ 237 (358)
+...+|++.++ |++..+.++..+...++..++.++.|+++||+ +||+++.++.++.++..+++.. . +.
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~------g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~ 120 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGLILAAAVMLFMGFVPWATSSI 120 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------CCchhHHHHHHHHHHHHHHHHhhhcccccH
Confidence 34567777766 99999999999999999999999999999999 6666777777777776665542 1 33
Q ss_pred hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHH
Q 018271 238 GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFML 317 (358)
Q Consensus 238 ~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~ 317 (358)
..+++.+++.|++.+..++.....+.|.+|+++|++++|+.+.+..+|+.+.+|++...+....+ |++
T Consensus 121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g------------w~~ 188 (452)
T PRK11273 121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND------------WHA 188 (452)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc------------HHH
Confidence 45666778889888877777778889999999999999999999988874455554333333334 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018271 318 SFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 318 ~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
.|++.+++.++..++.+++.++
T Consensus 189 ~f~i~~~~~~~~~~l~~~~~~~ 210 (452)
T PRK11273 189 ALYMPAFAAILVALFAFAMMRD 210 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 9999888777766555555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.5e-14 Score=131.03 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=113.8
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
+..+.+++..++.....+....++|.+.++.|++..+++.+.+...++..+++++.|+++||+ +|+........
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~ 323 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL------GPRVTALLLLL 323 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------chHHHHHHHHH
Confidence 445555556666666667778889988888999999999999999999999999999999999 55533333333
Q ss_pred HHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 224 TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 224 ~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
......++.. ..+....++..++.|++.+...+...+++.|.+|++.||+++|+.+....+|.. +||.+.|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~g~~~~G~l 397 (398)
T TIGR00895 324 GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAI-IGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHhHHhc
Confidence 3322222222 344455667778889998888888999999999999999999999999999995 899999875
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=129.59 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=129.3
Q ss_pred hhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcC
Q 018271 158 GSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF 236 (358)
Q Consensus 158 ~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~ 236 (358)
.....+...+|.+.+++|.+.++.++..++..++..++.+++|+++||+ +||+.+..+..+..++.++.. ..+
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~~~~~~ 93 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY------GRKPVLLAGLSLFALGSLGMLWVES 93 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc------CCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334455566677889999999999999999999999999999999999 666667777766666666555 456
Q ss_pred chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchH
Q 018271 237 PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFM 316 (358)
Q Consensus 237 ~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~ 316 (358)
.+.+++.+++.|++.+........++.|.+++++++...+..+....++.. ++|.+.|++.+..+ |+
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~~g------------~~ 160 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPA-LAPLLGAWLLNHFG------------WQ 160 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC------------hH
Confidence 667777888888887776666778899999999999999998888888884 89999999999887 99
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018271 317 LSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 317 ~~f~~~~~~~~~~~~~~~~~ 336 (358)
..|++.+++.++..++.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 161 AIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999888777776554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-12 Score=119.88 Aligned_cols=173 Identities=10% Similarity=0.119 Sum_probs=122.8
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcH-HHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNI-SQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
++.++++.+|...+..++.....+....++ |.+.++.|++..+.+.......+++.+|+++.|++.||. +++.
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~------~~~~ 283 (394)
T PRK10213 210 FRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS------VKLA 283 (394)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc------chhH
Confidence 456788888887666655555555555665 667778899998889999999999999999999999985 4443
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 217 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
.+...........++.. ..+.+.+.+..++.|++.+...+.....+.+..| ++.+...++......+|. .+||.++|
T Consensus 284 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~-~~G~~l~G 361 (394)
T PRK10213 284 LAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLAN-TCGAAIGG 361 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33333333333333322 3444556667788888888777777777887776 556677777777777888 48999999
Q ss_pred HHHhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 296 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 296 ~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
.++|..| +...++..+.+.++..
T Consensus 362 ~l~~~~g------------~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 362 YALDNIG------------LTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHhccC------------hhhHHHHHHHHHHHHH
Confidence 9999887 7777777666554444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-12 Score=121.51 Aligned_cols=177 Identities=16% Similarity=0.122 Sum_probs=116.6
Q ss_pred hhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 140 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
.++++.+|......++.....+.+.++++.+.+ ..|++..+.+++.+...+++.+++++.|+++||+ +++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~------~~~~~~ 268 (382)
T PRK10091 195 FLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY------SPLRIA 268 (382)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc------CchhHH
Confidence 456777777666555554444444555565555 5799999999999999999999999999999999 555555
Q ss_pred HHHHHHHHHHHHHHH--hcCchhHHHHHHHHHhhhhcccccHH-HHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 219 AITLATMSVGHIVVA--SGFPGNLYVGSIIVGVCYGCQWSLMP-TITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 219 ~~~~~~~~~~~~l~~--~~~~~~l~~~~~l~g~~~g~~~~~~~-~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
..+..+..++.+++. .++.....+..++.+++.++..+... ....+..+.+.++.+. .+....+|.. +||.+.|
T Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~-~Gp~~~G 345 (382)
T PRK10091 269 AVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSA-IGAYCGG 345 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHH-HHHHHhH
Confidence 556555555554433 23333334444455555444333323 3344444555555543 3566778884 8999999
Q ss_pred HHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 296 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 296 ~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
.+.|.+++ |+..+.+.++++++.......+
T Consensus 346 ~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 346 MMLTLGLA-----------YNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHcccC-----------cchHHHHHHHHHHHHHHHHHHH
Confidence 99997655 9999998887777766554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-12 Score=121.10 Aligned_cols=159 Identities=9% Similarity=0.044 Sum_probs=114.5
Q ss_pred hhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-
Q 018271 156 GMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA- 233 (358)
Q Consensus 156 ~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~- 233 (358)
.......+..++|.+.+ ++|++..+++.+.+...+...++.++.|+++||+ +||+.+..+.....+......
T Consensus 228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~------g~~~~~~~~~~~~~~~~~~~~~ 301 (393)
T PRK15011 228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL------GKRFLMRVAAVAGVCFYAGMLM 301 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHHHHH
Confidence 33344456678888775 5699988888888887788889999999999999 444444444433333333222
Q ss_pred hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCcccccc
Q 018271 234 SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTH 313 (358)
Q Consensus 234 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~ 313 (358)
..+.+.+++..++.+++.+...+..+.+..|.+|+ ++|++.++.+....+|.. ++|.++|.+.|..+
T Consensus 302 ~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~-~g~~l~G~i~~~~g----------- 368 (393)
T PRK15011 302 AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWI-IAGSLAGIVAEIWN----------- 368 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHH-HHHHHHHHHHHHhh-----------
Confidence 33444445555556666665556667778898885 589999999888899984 89999999999877
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 018271 314 CFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 314 ~~~~~f~~~~~~~~~~~~~~~ 334 (358)
|+..|++.+++.+++.+..+
T Consensus 369 -~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 369 -YHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred -hHHHHHHHHHHHHHHHHHHH
Confidence 99999888877777665543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=130.56 Aligned_cols=165 Identities=11% Similarity=0.040 Sum_probs=133.4
Q ss_pred chhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 143 TLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
++.++.++++.++...........++.+.+++|.+..+.+++.+.+.+...++.++.|+++||+ +||+++..+.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~------grr~vl~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF------PKGRVMFIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc------CCchhhHHHH
Confidence 4577888888888777666666667777889999988999999999999999999999999999 6666777777
Q ss_pred HHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc
Q 018271 223 ATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 301 (358)
Q Consensus 223 ~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~ 301 (358)
.+..++.+++. ..+ .++.+++.|++.+...+...++++|++|+++|+++.|+.+....+|. ++||.++|.+.+..
T Consensus 76 ~~~~~~~~~~~~~~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~-~~Gp~lgG~l~~~~ 151 (393)
T PRK11195 76 GIKLLGCLLMLFGIH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAI-LLGTVLGGALADPH 151 (393)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 76666555443 222 25677889999999999999999999999999999999999999898 58999999998852
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 302 ASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 302 g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
|+..+.+.+.+.+++.
T Consensus 152 -------------~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 152 -------------AEAALAVCALIYLLAA 167 (393)
T ss_pred -------------HHHHHHHHHHHHHHHH
Confidence 7777776665555444
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-12 Score=115.29 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=126.1
Q ss_pred HhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh---cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES---LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
+.++++.+++..+..++..+...++..|++.|+++ +|++.++++...+.+..+..+||++.++++||+ +++
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~------g~~ 208 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI------SQG 208 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHH
Confidence 35667888888888888888888999999999974 489999999999999999999999999999999 444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 216 SFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
+.+.++..+.++..++....+........++.|++.+..++...+...+.+|++ .+++.++. ..+.+|+. +.|++.|
T Consensus 209 ~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~-i~P~l~G 285 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGA-IVPLLQG 285 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcch-HHHHHHH
Confidence 455556555555554444322233334566888999999998888888888753 45666665 45667885 7899999
Q ss_pred HHHhhccCCCCCccccccchHHHHHHHHH
Q 018271 296 YIYDNVASGEGNSCNGTHCFMLSFLIMAS 324 (358)
Q Consensus 296 ~l~~~~g~~~~~~~~g~~~~~~~f~~~~~ 324 (358)
.+.|..| .+.+|++...
T Consensus 286 ~lad~~g------------~~~a~~v~~~ 302 (310)
T TIGR01272 286 SLADCLG------------IQLAFALPVP 302 (310)
T ss_pred HHHHhcc------------chHHHHHHHH
Confidence 9999887 7788774443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-12 Score=121.41 Aligned_cols=174 Identities=14% Similarity=0.020 Sum_probs=132.3
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
+.++.+|++.+|.+.+..++.......+.+.+|.+.++.|++..+.+.+.++..++..++.++.|++.||+ +++
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------~~~ 270 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW------SAR 270 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHH
Confidence 45788899999988777776666666667778888888999998899998888889999999999999998 666
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHH-HHhhhHHHHHhHHH
Q 018271 216 SFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIA-IASPVGSYVCSVRI 293 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~-~~~~ig~~i~gp~i 293 (358)
..+..+.+..++..+++. .++++.+++..++.|++.+...+....+..+. +++++++..++.+ ....+|. .+||.+
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~ig~~i 348 (382)
T PRK11128 271 DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSI-AIMTVL 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 667777777776666555 45556667778888888877666667777776 5566788888886 5556666 479999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
+|.++|..| + ..|+..+++.+++.
T Consensus 349 ~G~l~~~~g------------~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 349 SGFLYQHLG------------A-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHhcc------------H-HHHHHHHHHHHHHH
Confidence 999999887 5 46666666555443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=130.15 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.++..+++.++..........+++.+.+++|.+.++.++..+.+.++..++.++.|+++||+ +||+.+..+..+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~------g~k~~l~~~~~~ 87 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEII------GPLKTMMIGLLL 87 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc------CcHHHHHHHHHH
Confidence 44555556655555555566678888899999999999999999999999999999999999 666777777777
Q ss_pred HHHHHHHH---Hh--cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHh
Q 018271 225 MSVGHIVV---AS--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 299 (358)
Q Consensus 225 ~~~~~~l~---~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~ 299 (358)
.+++.+++ .. .+...+++.+++.|++.+.........+.+.+|+++|+++.|+.+.+..+|..+++|++++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66665433 21 34455667788888887766666667788999999999999999999998863478999999888
Q ss_pred hccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 300 NVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 300 ~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
..| |+..++....+..++.++
T Consensus 168 ~~g------------~~~~~~~~~~~~~~~~~~ 188 (402)
T TIGR00897 168 AFG------------EMNTLWSALAFVLTGGVI 188 (402)
T ss_pred ccc------------hHHHHHHHHHHHHHHHHH
Confidence 776 655555544443443333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-12 Score=123.57 Aligned_cols=180 Identities=13% Similarity=0.125 Sum_probs=134.0
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc----CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcC
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL----GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMG 211 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~ 211 (358)
+..+.+|++.+|.+.+..++..........+.+.+.++. +.+....+.+.++..+...++.+..|++.||+
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~----- 281 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI----- 281 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 356788899888776665555544445556777777654 45556678888888888999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHH-HHHHhhhHHHHH
Q 018271 212 WERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNT-IAIASPVGSYVC 289 (358)
Q Consensus 212 ~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~-~~~~~~ig~~i~ 289 (358)
+||..+.++..+.++...+.. ..+.+.+++..++.|++..........+..+.++++.+++..+. .+....+|+. +
T Consensus 282 -g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~-~ 359 (396)
T TIGR00882 282 -GAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMI-F 359 (396)
T ss_pred -ccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHH-H
Confidence 555566666666666665544 45566666677778877665555555677788888888887776 5678889984 8
Q ss_pred hHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 018271 290 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 290 gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~ 334 (358)
+|++.|++.|..| |+..|++.+++.++..++..
T Consensus 360 ~~~l~G~l~~~~G------------~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 360 LSTLAGNMYDSIG------------FQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHhHHHHHHhcc------------cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 99999999988887776553
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-15 Score=139.09 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=150.0
Q ss_pred HHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~ 226 (358)
.++.+...+...--+.+...++...+.+|.+.+..+++.+.+.+...+..|++|+++||+ .|+.++.++..+..
T Consensus 36 ~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry------NR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 36 VILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY------NRKRVIAVGIFIWT 109 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc------CcceEEeeHHHHHH
Confidence 334444455555555566666667777899999999999999999999999999999999 77788999999998
Q ss_pred HHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCC
Q 018271 227 VGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE 305 (358)
Q Consensus 227 ~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~ 305 (358)
++.++.. ....+.+.+++.+.|+|.+...++.+.+++|.|+..+|++.+++.+.+..+|+. +|-++++.+.+..+.
T Consensus 110 ~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsg-lG~vvgs~va~~~~~-- 186 (493)
T KOG1330|consen 110 LAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSG-LGYVVGSVVASLTFW-- 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccc-eeEEeeeeeccCccc--
Confidence 8888877 556778889999999999999999999999999999999999999999999995 776667777777665
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 306 GNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 306 ~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
||++|+..+++.++.+++..++.++..+
T Consensus 187 ---------Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 187 ---------WRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred ---------eEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 9999999999999999888777666554
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.2e-13 Score=125.85 Aligned_cols=187 Identities=11% Similarity=0.127 Sum_probs=130.9
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
+.+++.++.+++.....+.+....+.+.+ ++|+|.++.+++.++..++..++++..|++.||+ |.|+++.++.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~------G~R~v~~~~~ 107 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF------GGRRWTVFST 107 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHH
Confidence 56777777766666666666666677766 7999999999999999999999999999999999 4455566666
Q ss_pred HHHHHHHHHHH-h-----cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHH---HHhHHH
Q 018271 223 ATMSVGHIVVA-S-----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY---VCSVRI 293 (358)
Q Consensus 223 ~~~~~~~~l~~-~-----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~---i~gp~i 293 (358)
++..+..++.. . +++..+++.+++.|++ ++.++.....+++.||+++||++.|+....+.+|.. ++.|.+
T Consensus 108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~ 186 (462)
T PRK15034 108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV 186 (462)
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666655 2 4667788899999997 667888888999999999999999999544444442 233443
Q ss_pred HH-HHHhhccCCCCCccc-cccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 294 IG-YIYDNVASGEGNSCN-GTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 294 ~g-~l~~~~g~~~~~~~~-g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
.+ .+.+..|......-. +..+|+.+.++...+.++..++.+++.
T Consensus 187 i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~ 232 (462)
T PRK15034 187 IFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGM 232 (462)
T ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33 233433321100000 133477787777777777766655543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=131.10 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=124.5
Q ss_pred hHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhH
Q 018271 162 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 240 (358)
Q Consensus 162 ~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l 240 (358)
.+..++|.+.+++|.+.++.++..+.+.++..++.++.|+++||+ +||..+..+.++..++.+++. .++.+.+
T Consensus 37 ~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 110 (455)
T TIGR00892 37 AVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF------GCRPVVIAGGLLASLGMILASFSSNVIEL 110 (455)
T ss_pred chhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc------CchHHHHhhHHHHHHHHHHHHHhhhHHHH
Confidence 345568888899999999999999999999999999999999999 666677777777777666665 4555555
Q ss_pred HH-HHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHH
Q 018271 241 YV-GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 319 (358)
Q Consensus 241 ~~-~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f 319 (358)
++ .+++.|++.+..+.....++.+.++ ++|+++.|+.+.+..+|.. ++|++.|.+.+..| |+++|
T Consensus 111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~-~~~~l~~~l~~~~g------------wr~~f 176 (455)
T TIGR00892 111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLS-TLAPLNQYLFESFG------------WRGSF 176 (455)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHH-HHHHHHHHHHHHhC------------hHHHH
Confidence 44 3477788887665666678889886 7899999999999999985 78999999999887 99999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018271 320 LIMASVAFVGCLVAFLL 336 (358)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ 336 (358)
++.+++.+++.+..+++
T Consensus 177 ~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 177 LILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99998887766544433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-14 Score=134.90 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=124.4
Q ss_pred hHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH------hc
Q 018271 162 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA------SG 235 (358)
Q Consensus 162 ~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~------~~ 235 (358)
.+....|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+ +||+++..+.++.++..++++ .+
T Consensus 47 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (467)
T PRK09556 47 NFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK------NTKQFLPFLLILSAICMLGFGASLGSGSV 120 (467)
T ss_pred ChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc------CccchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345568889999999999999999999999999999999999999 555666666555555444332 24
Q ss_pred CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccch
Q 018271 236 FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF 315 (358)
Q Consensus 236 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~ 315 (358)
+...+++.+++.|++.+..++....+++|.+|+++||+++|+.+.+..+|+. +++++..++.+.... .+|
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~-l~~~i~~~~~~~~~~---------~~~ 190 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA-GAGGVALWGANYFFD---------GHV 190 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh-HHHHHHHHHHHhhcc---------Ccc
Confidence 5667888899999999988888889999999999999999999999999995 778777776664310 018
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018271 316 MLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 316 ~~~f~~~~~~~~~~~~~~~~~ 336 (358)
+..|.+.+++.++.+++.+++
T Consensus 191 ~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 191 IGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 888888777766655554444
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-12 Score=120.99 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=118.3
Q ss_pred hhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchh
Q 018271 161 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 239 (358)
Q Consensus 161 ~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~ 239 (358)
.....+.|.+.++.|++. .+...+...++..+++++.|++.||++ +++.+..+..+.+++.+++. ..+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (392)
T PRK12382 233 AVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFG------GVKVAIVSLLVETVGLLLLWLAPTAWV 304 (392)
T ss_pred hHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeehHHHHHHHHHHHHHHHHcccHHH
Confidence 345567778888877763 455666777888999999999999995 33445555555555555544 344445
Q ss_pred HHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHH
Q 018271 240 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 319 (358)
Q Consensus 240 l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f 319 (358)
.++..++.|++.+...+.......|.+|+++||+++|+.+....+|.. ++|++.|.+.|+.| |+..|
T Consensus 305 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-ig~~~~g~l~~~~g------------~~~~~ 371 (392)
T PRK12382 305 ALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYG-VSGPLAGMLATSFG------------YPSVF 371 (392)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC------------chHHH
Confidence 556677888888777777778888999999999999999999999985 89999999999987 99999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018271 320 LIMASVAFVGCLVAFL 335 (358)
Q Consensus 320 ~~~~~~~~~~~~~~~~ 335 (358)
++.+++.+++.++.+.
T Consensus 372 ~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 372 LAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999888877765443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-12 Score=118.22 Aligned_cols=171 Identities=20% Similarity=0.277 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc-CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH-HHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS-FIAIT 221 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~-~~~~~ 221 (358)
+.+|...+..++.......+..+.|.+.++. |.+..+.+...+...++..+++++.|+++||+ +||. .+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~ 248 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL------GRRRLLLLIG 248 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHH
Confidence 4566677777777777778888999998876 99999999999999999999999999999999 5555 67777
Q ss_pred HHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhh
Q 018271 222 LATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300 (358)
Q Consensus 222 ~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~ 300 (358)
..+..++.+.+. ..+....++..++.|++.+...+....++.|.+|+++|++.+|+.+....+|.. ++|.+.|.+.|.
T Consensus 249 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~g~l~~~ 327 (352)
T cd06174 249 LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA-LGPLLAGLLLDT 327 (352)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 777777766665 444566777888999999999999999999999999999999999999999995 899999999987
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 301 ~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
.+ |+..+++.+++.+++.+..
T Consensus 328 ~~------------~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 328 GG------------YGGVFLILAALALLAALLL 348 (352)
T ss_pred cC------------cchHHHHHHHHHHHHHHHh
Confidence 76 9999999998888877554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-13 Score=126.36 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=129.4
Q ss_pred hhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchh
Q 018271 161 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 239 (358)
Q Consensus 161 ~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~ 239 (358)
+.....+|.+.+++|+|..+.++..+.+.++..++.++.|+++||+ |||+++..+..+.+++.++.+ .++...
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~------G~r~~l~~~~~l~~~~~~~~~~a~~~~~ 99 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV------SERRSVAISLLLIAVGALMRELYPQSAL 99 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh------CchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence 4456678899999999999999999999999999999999999999 788889999999999988887 667778
Q ss_pred HHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHH
Q 018271 240 LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSF 319 (358)
Q Consensus 240 l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f 319 (358)
+++.+++.|++.+...+....++.+.++ ++|+.++|+...+..+|.. +++.+.+++.++... |+..+
T Consensus 100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~g~~~~~~l~~~~~~-----------w~~~~ 166 (393)
T PRK09705 100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGG-LGAAITPWLVQHSET-----------WYQTL 166 (393)
T ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC-----------HHHHH
Confidence 8889999999999888888889999997 7899999999988888884 788889988887633 99988
Q ss_pred HHHHHHHHHH
Q 018271 320 LIMASVAFVG 329 (358)
Q Consensus 320 ~~~~~~~~~~ 329 (358)
.+.++..++.
T Consensus 167 ~~~~~~~~~~ 176 (393)
T PRK09705 167 AWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHH
Confidence 7766554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=131.65 Aligned_cols=178 Identities=16% Similarity=0.090 Sum_probs=137.7
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.+...+++.++.++...++...........+|.+.++.+.+..+.++..+...++..++.++.|+++||++| |+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~------~~ 83 (417)
T PRK10489 10 LSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDR------KK 83 (417)
T ss_pred HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCC------ce
Confidence 344556788887777777777766677778899999998899999999999999999999999999999954 44
Q ss_pred HHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHh
Q 018271 217 FIAITLATMSVGHIVVA------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 290 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~------~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~g 290 (358)
.+..+..+.+++.+.+. .++...+++.+++.|++.+...+...++++|.+|+++|+++.++.+....+|. ++|
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g 162 (417)
T PRK10489 84 LILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGS-VIS 162 (417)
T ss_pred EEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHH-HhH
Confidence 44444444443333221 23345566777888888777677778889999999999999999999999998 489
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
|.++|.+.+..+ |++.|++.++..+++.++.
T Consensus 163 ~~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 163 PALGGLLIAAGG------------VAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHH
Confidence 999999998877 9999988777666655443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=121.56 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHH
Q 018271 186 SLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYE 264 (358)
Q Consensus 186 ~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e 264 (358)
...++..+.|.++.+++.||+ |||..+...+++++++.+++. ..+.....+..+..-++..+.+...+.|.+|
T Consensus 388 litslaefPGlLIt~~iverl------GRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPE 461 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVERL------GRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPE 461 (528)
T ss_pred HHHHHhhCCchhHHHHHHHHh------cchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCc
Confidence 455677888999999999999 777889989999888887766 4455555555555556667778888999999
Q ss_pred hhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018271 265 IFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRF 343 (358)
Q Consensus 265 ~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 343 (358)
.||+..|+++.|.....+++|+ ++.|+++ ...+.. -..+..+.+++++++.+++.++..|+|.+
T Consensus 462 VyPTavRatgvGtcSsmaRIgg-I~~p~iA-~~~e~s-------------~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 462 VYPTAVRATGVGTCSSMARIGG-IFSPVIA-MRAELS-------------TSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred ccchhhhhcchhhhhhHHhhhh-hhhhHHH-HHhccc-------------eeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 9999999999999999999999 5899888 333322 23444556667777777777776677654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.4e-12 Score=119.91 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=117.7
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc-CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
..++.++++.++.+.+..++..........+.+++.+.. | +....+.+.++..++.+++.+++++++||+ ++
T Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~------g~ 286 (437)
T TIGR00792 214 IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF------GR 286 (437)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh------Cc
Confidence 356778899998887777776666655555556665533 4 455666777788899999999999999999 55
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHhhhhcccccHHHHHHHhhC-------CcchHHHHHHHHHHhhhH
Q 018271 215 PSFIAITLATMSVGHIVVAS--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-------VGHMGTIFNTIAIASPVG 285 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-------~~~~g~~~g~~~~~~~ig 285 (358)
+..+..+..+.+++.+++.. .+...+++..++.|++.+..++..+++++|..+ ++.+|+.+|+.+....+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g 366 (437)
T TIGR00792 287 KILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLG 366 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence 56666666666665555442 233344556677788888888888888888754 556899999999999999
Q ss_pred HHHHhHHHHHHHHhhcc
Q 018271 286 SYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 286 ~~i~gp~i~g~l~~~~g 302 (358)
.. +++.+.|.+.+..|
T Consensus 367 ~~-lg~~i~g~ll~~~G 382 (437)
T TIGR00792 367 QA-LAGFLVGLILGIIG 382 (437)
T ss_pred HH-HHHHHHHHHHHHcC
Confidence 95 89999999998765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-13 Score=127.69 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=142.8
Q ss_pred ccccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhc-
Q 018271 133 EDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRM- 210 (358)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~- 210 (358)
...+++++++++.+|.++++.++.....+.+..++|+|+++ +|++..+.+++.++..+.+.+..+++|.++||.-+|.
T Consensus 247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l 326 (466)
T KOG2532|consen 247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL 326 (466)
T ss_pred CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 35578999999999999999999999999999999999986 5999999999999999999999999999999986641
Q ss_pred --CCchHHHHHHHHHHHHHHHHHHH-hcC-chhHHHHHHHHHhhhhccc-ccHHHHHHHhhCCcchHHHHHHHHHHhhhH
Q 018271 211 --GWERPSFIAITLATMSVGHIVVA-SGF-PGNLYVGSIIVGVCYGCQW-SLMPTITYEIFGVGHMGTIFNTIAIASPVG 285 (358)
Q Consensus 211 --~~gr~~~~~~~~~~~~~~~~l~~-~~~-~~~l~~~~~l~g~~~g~~~-~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig 285 (358)
...||..-.+++...+++++.+. ... .....+.++..+.+..+.. +-.+....+. .++.-+..+|+.+....++
T Consensus 327 s~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~ 405 (466)
T KOG2532|consen 327 SETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALA 405 (466)
T ss_pred chHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHH
Confidence 11456666777777777777666 222 2222222222222222222 2222222222 5578899999999999999
Q ss_pred HHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 286 SYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 286 ~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
++ ++|.+.|.+.. .++ .+.|+..|++.+++.+++.+...++.
T Consensus 406 ~~-~~P~~vg~~~~-~~t--------~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 406 GF-IAPLLVGIIVT-DNT--------REEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HH-HHHHheeeEeC-CCC--------HHHHHHHHHHHHHHHHHhchheeEee
Confidence 95 89999999884 211 12399999999999999886654443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-13 Score=126.56 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=125.6
Q ss_pred chhHHHHHHHHHHhhhhhhhHHhcHHHHH-HhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHH
Q 018271 143 TLNFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAIT 221 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~ 221 (358)
++.++.+++..++...........+|.+. +++|.|..+.++..+...++..+++++.|+++||+ +||+.+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~------g~r~~l~~~ 87 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY------GAKRSALQG 87 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh------cchHHHHHH
Confidence 45666666666666655566667788654 67899999999999999999999999999999999 666666666
Q ss_pred HHHHHHHHHHH---H-h-----cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 222 LATMSVGHIVV---A-S-----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 222 ~~~~~~~~~l~---~-~-----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
.+...++.+.+ . . .+...+++.+++.|++.+...+...+++.|.+|+++|++++|+.+.+..+|. .++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~-~~g~~ 166 (392)
T PRK12382 88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGAL-AAGAP 166 (392)
T ss_pred HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHH-HHHHH
Confidence 55544433221 1 1 2334567788999998887777777888999999999999999998888888 48999
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMAS 324 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~ 324 (358)
+++.+.+..| |+..+.+...
T Consensus 167 ~~~~l~~~~g------------~~~~~~~~~~ 186 (392)
T PRK12382 167 LGLLLHSHFG------------FAALALTTMV 186 (392)
T ss_pred HHHHHHhccC------------hHHHHHHHHH
Confidence 9999988777 8877665443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=127.77 Aligned_cols=148 Identities=18% Similarity=0.092 Sum_probs=113.1
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhc----------C---chhHH
Q 018271 175 GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG----------F---PGNLY 241 (358)
Q Consensus 175 G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~----------~---~~~l~ 241 (358)
|.+..+.++..+.+.++..++.+++|+++||+ |||+.+.++.++.+++.++.+.. + ...++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~------Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF------GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV 124 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence 88888999999999999999999999999999 77777777777776665544321 1 23466
Q ss_pred HHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHH
Q 018271 242 VGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLI 321 (358)
Q Consensus 242 ~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~ 321 (358)
+.+++.|++.|+..+...++++|++|+++||..+|+.+.+..+|.. +++.+.+.+....+. .. ....+||+.|++
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~---~~-~~~~gWr~~f~~ 199 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL-VVYFVNYFIARSGDA---SW-LNTDGWRYMFAS 199 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhccCcc---cc-cccCChHHHHHH
Confidence 8899999999999999999999999999999999999999899984 666655554321110 00 012239999998
Q ss_pred HHHHHHHHHHHH
Q 018271 322 MASVAFVGCLVA 333 (358)
Q Consensus 322 ~~~~~~~~~~~~ 333 (358)
.++..++..+..
T Consensus 200 ~~~~~~~~~~~~ 211 (479)
T PRK10077 200 EAIPALLFLMLL 211 (479)
T ss_pred HHHHHHHHHHHH
Confidence 877777665443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=129.42 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=119.4
Q ss_pred hhHHhcHHHHHHhcCCC--------chhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHH
Q 018271 161 LATVNNISQIGESLGYP--------TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV 232 (358)
Q Consensus 161 ~~~~~~l~~~~~~~G~s--------~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~ 232 (358)
..+...++.+..+++++ ..+.+++.+.+.++..++.+++|+++||+ |||+.+.++.++..++.++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~------grr~~~~~~~~~~~~~~~~~ 118 (481)
T TIGR00879 45 GVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF------GRKKSLLIIALLFVIGAILM 118 (481)
T ss_pred chhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh------hhHHHHHHHHHHHHHHHHHH
Confidence 33445566666666555 78899999999999999999999999999 66777777777777766665
Q ss_pred H-hcC---chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHH---HHHHhhccCCC
Q 018271 233 A-SGF---PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII---GYIYDNVASGE 305 (358)
Q Consensus 233 ~-~~~---~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~---g~l~~~~g~~~ 305 (358)
. ..+ .+.+++.+++.|++.+...+....++.|.+|+++|+.+.++.+.+..+|.. ++|.+. +...+..+
T Consensus 119 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~~--- 194 (481)
T TIGR00879 119 GLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL-VAYGFGSGKVSLNNTLG--- 194 (481)
T ss_pred HHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHH-HHHHHHHHhhcCCCCcc---
Confidence 3 222 236778899999999998888999999999999999999999999999994 788777 44334444
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHH
Q 018271 306 GNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 306 ~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
|++.|++.+...++..+.
T Consensus 195 ---------w~~~f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 195 ---------WRIPLGLQLIPAGLLFLG 212 (481)
T ss_pred ---------HHHHHHHHHHHHHHHHHH
Confidence 999999866655555433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-11 Score=118.38 Aligned_cols=158 Identities=11% Similarity=0.007 Sum_probs=123.0
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.++++++.++......++............|++.+. .|.+..++++......++..++.++.|+++||+ +|+.
T Consensus 255 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~------g~~~ 328 (471)
T PRK10504 255 LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF------GYRR 328 (471)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CchH
Confidence 357889999888877777766666666788888884 799999999998888899999999999999999 5666
Q ss_pred HHHHHHHHHHHHHHHHH-hc-Cch--hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 217 FIAITLATMSVGHIVVA-SG-FPG--NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~-~~~--~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
.+..+..+.++...++. .. ..+ .+.+..++.|++.+..++....+..+..|++.+|+++|+.+....+|.. +||.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~~ 407 (471)
T PRK10504 329 VLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMS-IGVT 407 (471)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHH-HHHH
Confidence 66666665555544443 21 121 2334456677777777778888889999999999999999999999995 8999
Q ss_pred HHHHHHhhcc
Q 018271 293 IIGYIYDNVA 302 (358)
Q Consensus 293 i~g~l~~~~g 302 (358)
+.|.+.+..+
T Consensus 408 i~g~ll~~~g 417 (471)
T PRK10504 408 IAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHhh
Confidence 9999988765
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=123.82 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=129.4
Q ss_pred chhHHHHHHHHHHhhhhhhhHHhcHHHHH-HhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHH
Q 018271 143 TLNFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAIT 221 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~ 221 (358)
++++..+.+..++...........+|.+. +++|.|..+.++..+...++..++.++.|+++||+ |||+++..+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~------g~r~~l~~~ 87 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL------GPKKAVVFG 87 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc------CCcchHHHH
Confidence 34555666666666666566677788755 57899999999999999999999999999999999 666667766
Q ss_pred HHHHHHHHHHHH----hc-----CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 222 LATMSVGHIVVA----SG-----FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 222 ~~~~~~~~~l~~----~~-----~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
.++.+++.+.+. .. +...+++.+++.|++.+...+....++.|.+++++|+++.++...+..+|. ++||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~ 166 (399)
T PRK05122 88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGAL-AIGAP 166 (399)
T ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHH-HHHHH
Confidence 665555433322 11 223467788999999998888888889999999999999999988888887 58999
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFV 328 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~ 328 (358)
+++.+.+..| |+..+++..++.++
T Consensus 167 l~~~l~~~~g------------~~~~~~~~~~~~~~ 190 (399)
T PRK05122 167 LGVLLYHWGG------------LAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHHccc------------HHHHHHHHHHHHHH
Confidence 9999998877 98888766655443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-11 Score=116.17 Aligned_cols=181 Identities=8% Similarity=0.028 Sum_probs=119.3
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.++.++++.++...+..+...........++|.+.++.+.++.+.+++.+...+....+....++..||.. +.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~-----~~~~ 275 (400)
T PRK11646 201 MTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRF-----RLEH 275 (400)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhH
Confidence 45667788877655544443333333456789988887667778888877777766655555555555421 2233
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 217 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
.+..+..+.+++.+++. .++...+.+..++.+++.+...+...+++.+..|++++|+.+|+.+....+|.. +||.+.|
T Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-ig~~l~G 354 (400)
T PRK11646 276 RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGA-IGYIGGG 354 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHH-hcccchH
Confidence 34455555555555554 344444445556677777777777888999999999999999999999999994 8999999
Q ss_pred HHHhhccCCCCCccccccchHHHHHHHHHHHHHHHH
Q 018271 296 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL 331 (358)
Q Consensus 296 ~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~ 331 (358)
++.|..++.+ .....|+..+++.+++.+
T Consensus 355 ~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 355 WLFDLGKALN--------QPELPWMMLGIIGLITLL 382 (400)
T ss_pred HHHHHHhhcC--------CcchHHHHHHHHHHHHHH
Confidence 9999864210 034555555555555543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-11 Score=116.70 Aligned_cols=158 Identities=13% Similarity=-0.078 Sum_probs=114.9
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.++++.+|...+..++.......+..+.|.+.+ ++|++..+.++......++..+|+++.|+++||+ +++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~------~~~ 281 (406)
T PRK15402 208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR------PLR 281 (406)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHH
Confidence 466788899888777766665555566667787765 5799988888887777888999999999999999 555
Q ss_pred HHHHHHHHHHHHHHHHHH-h-----cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 216 SFIAITLATMSVGHIVVA-S-----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~-----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
..+.++.++.+++..++. . .+...+.+..++.|++.+...+......... +++++|+..+..+....+|.. +
T Consensus 282 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~-~ 359 (406)
T PRK15402 282 SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFT-V 359 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHH-H
Confidence 556666555555544433 1 1233445667778888776665555444333 348899999999999999985 8
Q ss_pred hHHHHHHHHhhcc
Q 018271 290 SVRIIGYIYDNVA 302 (358)
Q Consensus 290 gp~i~g~l~~~~g 302 (358)
|+.+.|.+++..+
T Consensus 360 g~~~~~~l~~~~~ 372 (406)
T PRK15402 360 GIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHhcccCCc
Confidence 9999999998876
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=121.64 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=128.7
Q ss_pred chhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 143 TLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
++.+|.++...++...........+|.+.+++|.|..++++..+...++..+++++.|+++||+ |||+.+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~------g~k~~~~~~~ 78 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI------GFNRSYYLAS 78 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHH
Confidence 4567888888877777777788899999999999999999999999999999999999999999 6667777777
Q ss_pred HHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc
Q 018271 223 ATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 301 (358)
Q Consensus 223 ~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~ 301 (358)
++.+++..+.. .++.+.+++.+++.|++.+...+.....+.+..++++|++++|+.+.+..+|.. +||.+.+.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~ 157 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTV-LGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccc
Confidence 77777776665 566777888899999998887777677778888889999999999999999994 8999999887653
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.4e-12 Score=133.56 Aligned_cols=179 Identities=10% Similarity=0.087 Sum_probs=132.3
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
.++.+.+++.+|.+.+..++.......+..++|.|+++ +|.+...++++.+.+.++.++|.++.|+++|+..++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~----- 291 (1140)
T PRK06814 217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL----- 291 (1140)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-----
Confidence 45677788999988888777777777778899999876 599999999999999999999999999999876322
Q ss_pred HHHHHHHHHHHHHHHHHHH-h--------------------cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHH
Q 018271 215 PSFIAITLATMSVGHIVVA-S--------------------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGT 273 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~-~--------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~ 273 (358)
+ .+..+.++.+++.+.+. . .+.+.+++..+++|++.+.......+++.+..|++.+|+
T Consensus 292 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 292 L-YVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRAR 370 (1140)
T ss_pred e-eehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccccee
Confidence 2 22222222222221111 1 344455667778888888888888999999999999999
Q ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 274 IFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 274 ~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
++|+.++...+|.. +++++.|.+.+...+ +...+++.+.+.++.++.
T Consensus 371 v~g~~~~~~~~~~~-ig~~~~g~l~~~~~~-----------~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 371 VIAANNVLNAAFMV-AGTIILALLQALGFS-----------IPWIILFIALANLIVAIL 417 (1140)
T ss_pred eeHHHHHHHHHHHH-HHHHHHHHHHHhccC-----------HHHHHHHHHHHHHHHHHH
Confidence 99999999999884 789999998865443 777776666554444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=123.20 Aligned_cols=176 Identities=12% Similarity=0.102 Sum_probs=117.1
Q ss_pred HhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
..++++++|.+++.+++...+...+...+|.++++ +|++..+.++..+...++..++++++|+++||+ +||+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~------g~r~~ 78 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL------GLKKH 78 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchHH
Confidence 34678899999988888887777788888888776 799999999999999999999999999999999 55555
Q ss_pred HHHHHHHHHHHHH---HHHhcCc-h-hHHH----HHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHH
Q 018271 218 IAITLATMSVGHI---VVASGFP-G-NLYV----GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYV 288 (358)
Q Consensus 218 ~~~~~~~~~~~~~---l~~~~~~-~-~l~~----~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i 288 (358)
+.++..+.++... ....... . .... ..++.|.+.....+....+..+ +. +++|..+|.......+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~g~~~g~~~~~~~~g~~- 155 (420)
T PRK09528 79 LLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VS-RRSGFEYGRARMWGSLGWA- 155 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HH-hhccccchhhHHhhhHHHH-
Confidence 5443333332221 1111100 0 0111 1222232222222223333322 22 4567788888888889984
Q ss_pred HhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 289 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 289 ~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
++|+++|.+.+. + |+..|++.+++++++.++.+..
T Consensus 156 i~~~~~g~l~~~-~------------~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 156 LCAFIAGILFNI-N------------PQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred HHHHHHHHHHhc-C------------chHhHHHHHHHHHHHHHHHhcc
Confidence 799999999874 4 8899988887777666554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-12 Score=122.00 Aligned_cols=172 Identities=13% Similarity=0.045 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchh-hHH-----HHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSA-INS-----LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 219 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~-a~~-----~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~ 219 (358)
++..+++.++-.+-...+....|.+.++++.+.+. ..+ ..++..++..+|.++.|+++||+ |||+.+.
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~------Grr~~l~ 91 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY------GRQKILA 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccHHHHH
Confidence 33444455554444445555677777776433211 111 14666788999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHH-hcCch--------hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHh
Q 018271 220 ITLATMSVGHIVVA-SGFPG--------NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 290 (358)
Q Consensus 220 ~~~~~~~~~~~l~~-~~~~~--------~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~g 290 (358)
++.++++++.++.+ .++.. .+++.+++.|++.|+.++....++.|.+|+++||...++...+..+|.. ++
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~-lg 170 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV-LG 170 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH-HH
Confidence 89998888888777 45543 2678899999999999999999999999999999999999887777774 66
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFV 328 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~ 328 (358)
+.+...+....+. ......+||+.|++.+.+.++
T Consensus 171 ~~~~~~~~~~~~~----~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 171 AGVVVLISTIVGE----ANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHhcCH----HHhcCccHHHHHHHHHHHHHH
Confidence 6555443321100 000011299999987655444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-11 Score=113.67 Aligned_cols=174 Identities=11% Similarity=0.127 Sum_probs=108.6
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHh-cHHHHHHhcCCCchhhHHHHHHHH-HHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVN-NISQIGESLGYPTSAINSLVSLWS-IWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~G~s~~~a~~~~~~~~-i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
+.++.+|++.+|.+.+..++.......... ..+.+.++.|++.++.+++..... ++..+|.++.|++.||+ +
T Consensus 201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~------g 274 (402)
T PRK11902 201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL------G 274 (402)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------h
Confidence 356778898888776665554433222222 334455668999998888876654 56899999999999999 4
Q ss_pred hHHHHHHHHHHHHHHHH---HHHh-c-CchhHHHHHH----HHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhh
Q 018271 214 RPSFIAITLATMSVGHI---VVAS-G-FPGNLYVGSI----IVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV 284 (358)
Q Consensus 214 r~~~~~~~~~~~~~~~~---l~~~-~-~~~~l~~~~~----l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~i 284 (358)
++..+..+..+..+..+ ++.. . +.+.+++..+ ..|++.+...+....++.+.+|.+ .+++.+....+
T Consensus 275 ~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l 350 (402)
T PRK11902 275 LYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASV 350 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHH
Confidence 44444444433333322 2222 2 2233333333 344445555556666666666644 44555555566
Q ss_pred HHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 285 GSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 285 g~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
+.. .+++++|.++|+.| |+..|.+.+.++++++++
T Consensus 351 ~~~-~~~~~~G~l~~~~G------------~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 351 GRV-YVGPTSGYLVEAYG------------WPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHH-HHHHHHHHHHHHhC------------hHHHHHHHHHHHHHHHHH
Confidence 664 34558999999998 999999888877776544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-12 Score=120.43 Aligned_cols=169 Identities=11% Similarity=0.002 Sum_probs=122.5
Q ss_pred HHHHhhhhhhhHHhcHHHHH-HhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHH
Q 018271 152 AMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHI 230 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~-~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~ 230 (358)
.+++...+.......+|.+. +++|.|..+.++..+...+...+..++.|+++||+|+ ||.++..+..+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~-----r~~~~~~~~~~~~~~~~ 79 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGD-----RKGLILFCCLLAALACL 79 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----chHHHHHHHHHHHHHHH
Confidence 34444444455666777665 5789999999999999999999999999999999942 23344445555555555
Q ss_pred HHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHH--HHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCC
Q 018271 231 VVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTI--FNTIAIASPVGSYVCSVRIIGYIYDNVASGEGN 307 (358)
Q Consensus 231 l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~--~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~ 307 (358)
+.. .++.+.+++..++.|.+.+...+....+..|..+++.|+.+ .+....+..+|. +++|++++.+.+..+
T Consensus 80 ~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ig~~~~~~l~~~~~----- 153 (375)
T TIGR00899 80 LFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAW-VIGPPLAFWLALGFG----- 153 (375)
T ss_pred HHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHH-HHhhhHHHHHHHhcc-----
Confidence 544 45555666666777766666666667778888887766644 577777888888 489999999998877
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 308 SCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 308 ~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
|++.|++.+.+.++..+..+++.+
T Consensus 154 -------~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 154 -------FTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999998877777665554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-13 Score=129.59 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=121.7
Q ss_pred hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH---hcCchhHHHHHHHHHh
Q 018271 173 SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA---SGFPGNLYVGSIIVGV 249 (358)
Q Consensus 173 ~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~g~ 249 (358)
++|++..+.+++.+.+.++..++.++.|+++||+ +||+.+..+.++.+++.++.. ..+...+++.+++.|+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY------VFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh------CcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 5789999999999999999999999999999999 566667667666666655542 2345567888999999
Q ss_pred hhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc-cCCCCCccccccchHHHHHHHHHHHHH
Q 018271 250 CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV-ASGEGNSCNGTHCFMLSFLIMASVAFV 328 (358)
Q Consensus 250 ~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~-g~~~~~~~~g~~~~~~~f~~~~~~~~~ 328 (358)
+.+..++....+++|.+|+++|++..|+.+.+..+|.. ++|++.+.+.+.. + |+..|++.+++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~l~~~l~~~~~g------------w~~~f~i~~~~~~~ 210 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTF-IFLPISGWLCESWGG------------WPMIFYVFGIVGCA 210 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCC------------CCeehhhhhHHHHH
Confidence 99999999999999999999999999999999999995 8999999998874 6 99999998887766
Q ss_pred HHHHHHHHH
Q 018271 329 GCLVAFLLF 337 (358)
Q Consensus 329 ~~~~~~~~~ 337 (358)
..++.+.+.
T Consensus 211 ~~~~~~~~~ 219 (465)
T TIGR00894 211 WSLLWFVFP 219 (465)
T ss_pred HHHHHHHHh
Confidence 655544443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-11 Score=129.73 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=130.5
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCch-hhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTS-AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~-~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
.++.+++++.+|...+..++.....+.+..++|.+.+ .+|++.. ..+++.+...++.++|.++.|+++||++
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~------ 297 (1146)
T PRK08633 224 NLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHI------ 297 (1146)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCce------
Confidence 3556778888887777666666666667778888776 5699988 8899999999999999999999999984
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 214 RPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 214 r~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
++..+.++.++.+++.+++. ..+...+++..++.|++.+...+...+++.+..|++.||+++|+.++...+|.. +++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~-~~~~ 376 (1146)
T PRK08633 298 ELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML-LFLA 376 (1146)
T ss_pred EccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHH-HHHH
Confidence 33445555555555555544 344455666778888888887778888999999999999999999999988884 6666
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
+++.+...... +...|++.+.+.++..+..
T Consensus 377 ~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 406 (1146)
T PRK08633 377 LTTLFSGLGLS-----------PAGLFYLIALVTLIGTLYT 406 (1146)
T ss_pred HHHHHHHhccC-----------HHHHHHHHHHHHHHHHHHH
Confidence 66655442111 5566666665555444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-11 Score=110.97 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=108.5
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.++++.+|...+...+.....+....+.|.+.+ ++|+++.+.+.+.+...++..+++++.|+++||+ +++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~------~~~ 272 (385)
T TIGR00710 199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW------GAK 272 (385)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHH
Confidence 456778888887777666666666677777887776 6799999999999999999999999999999999 555
Q ss_pred HHHHHHHHHHHHHHHHHH-h---c-Cc-hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 216 SFIAITLATMSVGHIVVA-S---G-FP-GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~---~-~~-~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
..+..+..+..++.+++. . . +. ..++...++.|++.+...+.......|.+| ++++++.++.+.....++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~ 351 (385)
T TIGR00710 273 SLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIV 351 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHH
Confidence 555545444444443332 1 1 11 223444567778888777777888888877 678999999887776555455
Q ss_pred hHHHHHHHH
Q 018271 290 SVRIIGYIY 298 (358)
Q Consensus 290 gp~i~g~l~ 298 (358)
+| +.|.+.
T Consensus 352 ~~-~~~~~~ 359 (385)
T TIGR00710 352 GY-LVSLIH 359 (385)
T ss_pred HH-HHHhcc
Confidence 55 455443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-10 Score=110.33 Aligned_cols=188 Identities=18% Similarity=0.131 Sum_probs=138.2
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcC-CCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLG-YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G-~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
..+++|+|++....+..++...+...+.++.+.++++.| ++....+...++..++.++.-...+++..|+ +-+
T Consensus 200 ~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~------g~~ 273 (400)
T PF03825_consen 200 ALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF------GIK 273 (400)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHH
Confidence 467899999988888888777777778888899999997 7777777777777778887777777777777 666
Q ss_pred HHHHHHHHHHHHHHHHHH-h-cCchhHHHH----HHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHH-HhhhHHHH
Q 018271 216 SFIAITLATMSVGHIVVA-S-GFPGNLYVG----SIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAI-ASPVGSYV 288 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~-~~~~~l~~~----~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~-~~~ig~~i 288 (358)
.++.++.+..++=..+++ . .+.+..+.. ..+.|+.++..+.....++.+..|++.|+++.++.+. ..++|. .
T Consensus 274 ~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~-~ 352 (400)
T PF03825_consen 274 WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGG-A 352 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHH-H
Confidence 777777777776555555 3 233332222 2468999998888899999999999999999999854 568888 4
Q ss_pred HhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 289 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 289 ~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
+|..++|+++|+.|.++ ...|...+.+.+++.++..++.+++.
T Consensus 353 iG~~igG~l~~~~g~~~------~~~~~~~~~v~a~~~~~~~~~f~~~f 395 (400)
T PF03825_consen 353 IGSLIGGWLYDAFGARG------MFDWSAVFLVFAVMALVILVLFVILF 395 (400)
T ss_pred HHHHHHHHHHHHhcchh------hhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999987321 11144555555655555555444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-12 Score=118.74 Aligned_cols=171 Identities=13% Similarity=0.122 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHH
Q 018271 143 TLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAIT 221 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~ 221 (358)
||.+|.+...+++.......+..++|.+++ ++|++..+.++..+...++..+++++.|+++||+ +||+.+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~------grr~~~~~~ 74 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL------GLKKHLLWI 74 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHH
Confidence 578898888888888777778888888876 4699999999999999999999999999999999 555555444
Q ss_pred HHHHHHHHH---HHHhcC------chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 222 LATMSVGHI---VVASGF------PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 222 ~~~~~~~~~---l~~~~~------~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
....++... .+.... .....+..++.|++.+...+....+..|.-+ +++..+|.....+.+|. ++||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~-~~g~~ 151 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGW-ALCAS 151 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHH-HHHHH
Confidence 333332222 111111 1122334566677777666666666666432 33556777777888888 47999
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
++|.+.+. + |+..|++.+++.++.+++.+.
T Consensus 152 ~~g~l~~~-~------------~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 152 IAGILFSI-D------------PQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHhhhhcc-C------------chHHHHHHHHHHHHHHHHHHH
Confidence 99988764 4 999999888877777655433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=117.14 Aligned_cols=181 Identities=11% Similarity=0.020 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.++.+...+++...........+|.+.+++|.+..+.+++.+...++..++.+..|++.||+ |||+.+..+..+
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~------G~r~~~~~g~~l 77 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL------SYKAGILLGLFL 77 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchHHHHHHHHH
Confidence 34555555555444444445778889889999999999999999999999999999999999 777788888888
Q ss_pred HHHHHHHHH----hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhh
Q 018271 225 MSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300 (358)
Q Consensus 225 ~~~~~~l~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~ 300 (358)
.+++.+++. ..+...+++.+++.|++.+...+...+++.+..|++++++..++.+....+|.. ++|.+.+.+...
T Consensus 78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~-~g~~i~~~l~~~ 156 (410)
T TIGR00885 78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSI-IGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 888777653 234566778889999999999888899999999999999999999999999994 899988887643
Q ss_pred ccCCCC-Cc-------------cccccchHHHHHHHHHHHHHHHHH
Q 018271 301 VASGEG-NS-------------CNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 301 ~g~~~~-~~-------------~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
.....+ .. -....+|+++|++.+++.++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 157 NLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred CCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 210000 00 000123999998888876665443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-11 Score=116.93 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=112.8
Q ss_pred HHHhhhhhhhHHhcHHHHHHhcC---CCchhh---HHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 018271 153 MLCGMGSGLATVNNISQIGESLG---YPTSAI---NSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 226 (358)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~G---~s~~~a---~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~ 226 (358)
.++-..-...+....|.+.++++ .+..+. +...+...++..+|.+++|+++||+ |||+.+..+..+..
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~------Grr~~l~~~~~~~~ 104 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH------GRKKSMLISVCMMC 104 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 33333333444555667777764 444432 2334455566679999999999999 77788888888888
Q ss_pred HHHHHHH-hcCc--------hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 227 VGHIVVA-SGFP--------GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 227 ~~~~l~~-~~~~--------~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
++.++.+ .++. ..+++.+++.|++.|+.++....+++|.+|+++||...++...+...|.. .++.+.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~-~~~~~~~~~ 183 (432)
T PRK10406 105 FGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQL-LALLVVVVL 183 (432)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8887766 3443 24778899999999999999999999999999999999988777777763 566554443
Q ss_pred Hh--------hccCCCCCccccccchHHHHHHHHHHHHHH
Q 018271 298 YD--------NVASGEGNSCNGTHCFMLSFLIMASVAFVG 329 (358)
Q Consensus 298 ~~--------~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~ 329 (358)
.. .+| ||..|++.++..++.
T Consensus 184 ~~~~~~~~~~~~g------------Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 184 QQTLEDAELREWG------------WRIPFALGAVLAVVA 211 (432)
T ss_pred HHhCCHHHHhccc------------hHHHHHHHHHHHHHH
Confidence 32 234 999998876655543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.3e-11 Score=110.56 Aligned_cols=184 Identities=14% Similarity=0.159 Sum_probs=143.0
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc----CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcC
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL----GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMG 211 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~ 211 (358)
...+++|++++|.+.+........+..+....+.|.+.+ +.+....|.+.++..+..++.-.+..++.+|+
T Consensus 212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri----- 286 (412)
T PF01306_consen 212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI----- 286 (412)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 357889999999887766666666666766677777654 34445577788888888899999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHH-HHHhhhHHHHH
Q 018271 212 WERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVC 289 (358)
Q Consensus 212 ~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~-~~~~~ig~~i~ 289 (358)
|.|..+.++..++++=.++.+ .++++.+.+.-.+.|+-.+.......-++++.|+++..++.+.+. +.+..+|.. +
T Consensus 287 -g~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~-i 364 (412)
T PF01306_consen 287 -GAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII-I 364 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH-H
T ss_pred -ChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-H
Confidence 566667777777777666666 677777888889999988877777888999999999999999986 678888885 5
Q ss_pred hHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 290 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 290 gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
.+.++|.++|+.| ++.+|++++.+.+...+++.+..+
T Consensus 365 ~s~~~G~lyd~~G------------~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 365 LSPLAGYLYDRIG------------FQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HhhhHHhhHhhcC------------cHHHHHHHHHHHHHHHHHheeeec
Confidence 6789999999998 999999999887777766665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=117.04 Aligned_cols=180 Identities=14% Similarity=0.176 Sum_probs=148.7
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
+.+++.+++.+....++.++..-+..+.......+.. ++|++..+..++....++.+++|.++.|++.||++ -
T Consensus 244 t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg------~ 317 (438)
T COG2270 244 TFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG------S 317 (438)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------C
Confidence 4667777777777888888887777778888888887 88999999999999999999999999999999995 3
Q ss_pred HHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHH
Q 018271 215 PSFIAITLATMSVGHIV-VASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l-~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
|.++.++.++..+..+. +.......++++.++.|++.|+.++..-++..++.|+++-+..+|++++.++.++ ++||.+
T Consensus 318 k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S-~~gp~l 396 (438)
T COG2270 318 KPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAAS-FLGPFL 396 (438)
T ss_pred ceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHH-HHHHHH
Confidence 34455555555444443 3344456677788999999999999999999999999999999999999999999 599999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
.+.+.+.+|+ -|..+....++.+++.++.
T Consensus 397 v~v~t~iTg~-----------~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 397 VAVITQITGS-----------SRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred HHHHHHHhcc-----------hhhHHHHHHHHHHhhHhhE
Confidence 9999999987 8888888888777776543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=121.85 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=132.3
Q ss_pred hchhHHHHHHHHHHhhhhh----hhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 142 CTLNFWLLFVAMLCGMGSG----LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
++++++..+.++.+..... ....+.++++.+++|-+ ....|+.+...++..++.++.|.++|.+ |||++
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf------GRr~~ 110 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF------GRRYF 110 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh------cchHH
Confidence 3456655544443332222 22334567888899865 5567888899999999999999999999 88899
Q ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHH
Q 018271 218 IAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 296 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~ 296 (358)
++++.++.+++.+..+ .++...++....+.|++.|... +....++|+.|.+.|+.++++......+.. ..+|.++..
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~-~~~~~ia~~ 188 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITT-WISPLIAQL 188 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhh-cccHHHHHH
Confidence 9999999999999888 6777888889999999876554 556678999999999888877765554444 356666655
Q ss_pred HHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018271 297 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRT 340 (358)
Q Consensus 297 l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 340 (358)
+..+.+ |||.|++..+...++++..++++.++
T Consensus 189 ~~~~~~------------WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 189 FAAHSG------------WRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred hccCCC------------cchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 544333 99999999998888887666655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=121.49 Aligned_cols=158 Identities=11% Similarity=0.091 Sum_probs=122.3
Q ss_pred hhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHh---
Q 018271 158 GSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS--- 234 (358)
Q Consensus 158 ~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~--- 234 (358)
+..|.+....|.+.+++|++..+.+++.++... ..++.+..|+++||+ |+|+++.++.++..++.++.+.
T Consensus 41 g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~------G~R~vllig~ll~~iG~ll~ala~~ 113 (591)
T PTZ00207 41 SFMYAFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL------GPRPIFVLSMTVFCLGTLLFALTFQ 113 (591)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677788888999999998888776443 345666789999999 7788888888888888877763
Q ss_pred ----cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccc
Q 018271 235 ----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCN 310 (358)
Q Consensus 235 ----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~ 310 (358)
.+.+.+.+.+++.|++.+.........+.++|| ++||.+.|+...+..+|+.+++|+..+++.+ +
T Consensus 114 ~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~-------- 182 (591)
T PTZ00207 114 EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--N-------- 182 (591)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h--------
Confidence 245667778889998888777777778889997 7899999999999999997677766666543 2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 311 GTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 311 g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
|+..|++.+++.++..++.+.+.
T Consensus 183 ----~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 183 ----TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhe
Confidence 77888888887777766655543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-11 Score=112.10 Aligned_cols=141 Identities=11% Similarity=0.021 Sum_probs=103.9
Q ss_pred HHHhhhchh---HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHH-HHHHHhhhHhHHHHHHHhhhcCC
Q 018271 137 ILQSVCTLN---FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWS-IWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 137 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~-i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
.++.++++. ++.+.+..++.....+....++|.+++++|++.++.+.+..... +...+|.+++|+++||+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~------ 272 (356)
T TIGR00901 199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL------ 272 (356)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh------
Confidence 455566654 67666666666677777888999999989999999888777655 67889999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHH-h-----------cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHH
Q 018271 213 ERPSFIAITLATMSVGHIVVA-S-----------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAI 280 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~-~-----------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~ 280 (358)
+|+..+..+.++.++...++. . ++.+.+....++.+++.+..++...+++.|.+|++++|+.+|+.+.
T Consensus 273 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 352 (356)
T TIGR00901 273 NILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSS 352 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 544445555555544444322 1 1223344556677888888889999999999999999999999876
Q ss_pred Hhh
Q 018271 281 ASP 283 (358)
Q Consensus 281 ~~~ 283 (358)
..+
T Consensus 353 ~~~ 355 (356)
T TIGR00901 353 LSA 355 (356)
T ss_pred HHh
Confidence 553
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-11 Score=115.15 Aligned_cols=157 Identities=6% Similarity=0.025 Sum_probs=126.7
Q ss_pred HHhcHHHHHHhcCCCchh-hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhH
Q 018271 163 TVNNISQIGESLGYPTSA-INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 240 (358)
Q Consensus 163 ~~~~l~~~~~~~G~s~~~-a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l 240 (358)
.....|++.+++|++.++ .+.+.+.+..+..+..+.+|+++||+ |-|+++.++.+...+..++.. ..+...+
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl------G~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL------RYKPVLVLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh------CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788899999999 99999999999999999999999999 555667777777777777666 5567788
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHH
Q 018271 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFL 320 (358)
Q Consensus 241 ~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~ 320 (358)
.+.+++.|++.|+.+ ....++...+|+++|+++.|+.+.+..+|.+ +++++++.+ ...|-+ .|....+
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~-Ia~~L~qll-~s~gWr---------~y~~Ln~ 186 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVF-LSSVLGQLL-VTLGWI---------SYSTLNI 186 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HhcCch---------hHHHHHH
Confidence 899999999999999 8899999999999999999999999999995 788888884 444411 1455556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018271 321 IMASVAFVGCLVAFLLF 337 (358)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (358)
+..+...+++++++++.
T Consensus 187 Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 66666666666665554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.7e-11 Score=113.96 Aligned_cols=171 Identities=13% Similarity=0.099 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHH-HHhc--CCCchhhHHHH-----HHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQI-GESL--GYPTSAINSLV-----SLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--G~s~~~a~~~~-----~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
++..++..++-..-...+....|.+ .+++ +.++.. ++.. ++..++..+|.++.|+++||+ |||+.
T Consensus 24 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~------Grr~~ 96 (438)
T PRK09952 24 ALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL------GRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh------ccHHH
Confidence 3334444444333333333344433 3344 566553 3332 234456778889999999999 77788
Q ss_pred HHHHHHHHHHHHHHHH-hcCch--------hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHH
Q 018271 218 IAITLATMSVGHIVVA-SGFPG--------NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYV 288 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~-~~~~~--------~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i 288 (358)
+..+.++.+++.++.+ .++.. .+++.+++.|++.|+.++....++.|.+|+++||...+..+.+..+|..
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~- 175 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL- 175 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH-
Confidence 8888888888887776 45543 3667899999999999988899999999999999999999988888884
Q ss_pred HhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHH
Q 018271 289 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFV 328 (358)
Q Consensus 289 ~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~ 328 (358)
+++.+.+.+....+.. -....+||..|++.++..++
T Consensus 176 l~~~~~~~l~~~~~~~----~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 176 LSTGLVSLISMMTTDE----QFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHhCCHH----HhhccChHHHHHHHHHHHHH
Confidence 6766666654321100 00011299999887665433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=115.57 Aligned_cols=178 Identities=11% Similarity=0.016 Sum_probs=118.9
Q ss_pred chhHHHHHHHHHHhhhhhhhHHhcHHHHH-HhcCCCchhhHHHHHHHHH-HHHHhhhHhHHHHHHHhhhcCCchHHHHHH
Q 018271 143 TLNFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIVLHRMGWERPSFIAI 220 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~G~s~~~a~~~~~~~~i-~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~ 220 (358)
|.+.|.+++..++.......+...+|.+. +++|.|.++.++..+...+ +..++.+..++ +||+++ ||.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~-----r~~~~~~ 87 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGD-----RKSLIVF 87 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-----hhHHHHH
Confidence 55667777777777766666777777765 5679999999998776554 66666666666 999952 3344444
Q ss_pred HHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcch--HHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 221 TLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM--GTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 221 ~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~--g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
+.+...+...++. ..+.+.+++...+.+...+...+....+..|..+++.| +...++.+.+..+|. +++|++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~-~~g~~i~~~l 166 (393)
T PRK15011 88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAW-VIGPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 4444444444444 34444444444444433344555666777777665544 344578888889999 5899999999
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
.++.| |+..|++.++..++.++..++..++
T Consensus 167 ~~~~g------------w~~~f~~~~~~~~~~~~~~~~~~~~ 196 (393)
T PRK15011 167 AMGFS------------FTVMYLSAAVAFIVCGVMVWLFLPS 196 (393)
T ss_pred HHhcC------------hHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99887 9999999888777776555444443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-11 Score=118.38 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=111.7
Q ss_pred CCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcC------chhHHHHHHHHH
Q 018271 176 YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF------PGNLYVGSIIVG 248 (358)
Q Consensus 176 ~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~------~~~l~~~~~l~g 248 (358)
.+..+.+++.+...++..+|.+++|+++||+ |||+.+.++.++..++.++.. ..+ ...+++.+++.|
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~------Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G 126 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKL------GRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLG 126 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHH
Confidence 4455667889999999999999999999999 777777777777777666554 232 346778899999
Q ss_pred hhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC----CC---CCccc----cccchHH
Q 018271 249 VCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS----GE---GNSCN----GTHCFML 317 (358)
Q Consensus 249 ~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~----~~---~~~~~----g~~~~~~ 317 (358)
++.|+.++..+.++.|.+|++.||++.++.+....+|. ++++.+...+...... .+ ...|. ...+||.
T Consensus 127 ~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~ 205 (502)
T TIGR00887 127 VGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI-LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRI 205 (502)
T ss_pred HHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccccccccccccccchhcccHHH
Confidence 99999999999999999999999999999999999998 4788777765432210 00 00000 1124999
Q ss_pred HHHHHHHHHHHHHHH
Q 018271 318 SFLIMASVAFVGCLV 332 (358)
Q Consensus 318 ~f~~~~~~~~~~~~~ 332 (358)
.|.+.++..++..+.
T Consensus 206 ~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 206 LIGFGAVPALLALYF 220 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 997776666555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-11 Score=113.58 Aligned_cols=175 Identities=10% Similarity=-0.021 Sum_probs=123.6
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH---hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE---SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
++.++++.+|.+.+..++.......+..+.+.+.. +.+.+....+.+.+...+.....++..|++.||+ ++
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~------~~ 273 (395)
T PRK10054 200 SVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA------NI 273 (395)
T ss_pred hhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC------Cc
Confidence 45678888887777776665555555566666654 3355666667777777777777778889999998 55
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 215 PSFIAITLATMSVGHIVVAS--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
+..+..+..+..++..++.. .+...+.+..++.|++.+...+.....+.+..|++.+|+.+|..+ ...+|.. +||+
T Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~-~Gp~ 351 (395)
T PRK10054 274 RPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAA-INPL 351 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHH-HHHH
Confidence 56666666666666555442 233344556677888877666777788999999999999998765 4557884 8999
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
++|.++|+.| +...|++.+.+..++.++
T Consensus 352 ~~G~l~~~~g------------~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 352 VSGVILTTLP------------PWSLFVILALAIVAAWLL 379 (395)
T ss_pred HHHHHHHHcC------------hhhHHHHHHHHHHHHHHH
Confidence 9999999987 777887766655555433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-12 Score=117.83 Aligned_cols=160 Identities=9% Similarity=0.041 Sum_probs=118.3
Q ss_pred HHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~ 226 (358)
+.+.+.+++...+.......+|.+.+++|+|..+.++..+...+...++.+++|.++||++|+.. .+..+..+..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII--ALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHH
Confidence 44556666666655667788999999999999999999999999999999999999999954321 1122222222222
Q ss_pred HHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCC
Q 018271 227 VGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE 305 (358)
Q Consensus 227 ~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~ 305 (358)
+ .... .++.+.+++...+.+.+.+...+...++..+. .++|+..+|.....+.+|. +++|+++|.+.+..|
T Consensus 85 ~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~-~~g~~l~g~l~~~~g--- 156 (382)
T TIGR00902 85 A--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAF-IIGSALFGGLIGMFD--- 156 (382)
T ss_pred H--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHH-HHHHHHHHHHHHHcC---
Confidence 1 1222 34566677777778877777777777776553 4678999999999999998 589999999999988
Q ss_pred CCccccccchHHHHHHHHHH
Q 018271 306 GNSCNGTHCFMLSFLIMASV 325 (358)
Q Consensus 306 ~~~~~g~~~~~~~f~~~~~~ 325 (358)
|+..|++.+.+
T Consensus 157 ---------~~~~f~~~~~~ 167 (382)
T TIGR00902 157 ---------EQNILAILTAG 167 (382)
T ss_pred ---------hhHHHHHHHHH
Confidence 99999887655
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=101.67 Aligned_cols=132 Identities=13% Similarity=0.189 Sum_probs=106.9
Q ss_pred HHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHH
Q 018271 186 SLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYE 264 (358)
Q Consensus 186 ~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e 264 (358)
+...++..++.++.|++.||+ +||+.+..+..+..++.++.. ..+...+.+..++.|++.+...+....++.|
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF------GRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc------chhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456678889999999999999 566666666666666666555 4555667777889999988888888999999
Q ss_pred hhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 265 IFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 265 ~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
.+|+++|++..++.+....+|.. ++|.+.+.+.+..+ |++.+++.+.+.+++.+....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPL-LGPPLGGVLAQFLG------------WRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHH-HhHHhHHHHhcccc------------hHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999994 89999999988776 9999998887777776554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.4e-11 Score=113.22 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=123.8
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHH-H-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIG-E-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
.+++++++.++...+..++.....+....|++.++ + ..|+++.++++....+.++.++|+++.|++.||+ ++
T Consensus 251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~------g~ 324 (438)
T PRK10133 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF------AP 324 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CH
Confidence 45678888888777766776666666777888774 4 4699999999999999999999999999999999 55
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHH
Q 018271 215 PSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
++.+..+..+.++.+.+.. ..+. ..+....+.|++.+..++...+...+.+|+ +.+++.++..+ ..+|+. ++|++
T Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~-~~~~i 400 (438)
T PRK10133 325 HKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGG-IVTPV 400 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-Hhccch-HHHHH
Confidence 5555555555544444333 2222 334567788999999999999999988875 45677777754 335664 67889
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAF 327 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~ 327 (358)
.|.+.|..|+ .+..|++..++.+
T Consensus 401 ~G~l~~~~g~-----------~~~~~~v~~~~~~ 423 (438)
T PRK10133 401 MGFVSDAAGN-----------IPTAELIPALCFA 423 (438)
T ss_pred HHHHHHhccc-----------hHHHHHHHHHHHH
Confidence 9999998763 5677765554433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-11 Score=114.04 Aligned_cols=159 Identities=17% Similarity=0.119 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHH-HHHH-----HHHHHHhhhHhHHHHHHHhhhcCCchHHHHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSL-VSLW-----SIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 219 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~-~~~~-----~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~ 219 (358)
...++++.++...-...+....|.+.++++.+..+.+.+ .+.. .+...+|.++.|+++||+ |||+.+.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~------Grr~~l~ 90 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV------GRRKGLI 90 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh------chHHHHH
Confidence 344555666666666677788899999998877664333 2222 223357889999999999 7777788
Q ss_pred HHHHHHHHHHHHHH-hcCch--------hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHh
Q 018271 220 ITLATMSVGHIVVA-SGFPG--------NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 290 (358)
Q Consensus 220 ~~~~~~~~~~~l~~-~~~~~--------~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~g 290 (358)
.+..+.+++.++.. .++.. .+++.+++.|++.+..++....+++|.+|+++|++..++.+.+..+|. .++
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~-~~g 169 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV-VFA 169 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH-HHH
Confidence 88888888777776 44443 356788999999998888888999999999999999999988888877 467
Q ss_pred HHHHHHHH--------hhccCCCCCccccccchHHHHHHHH
Q 018271 291 VRIIGYIY--------DNVASGEGNSCNGTHCFMLSFLIMA 323 (358)
Q Consensus 291 p~i~g~l~--------~~~g~~~~~~~~g~~~~~~~f~~~~ 323 (358)
+.+++.+. +..| |++.|++..
T Consensus 170 ~~~g~~l~~~~~~~~~~~~g------------Wr~~f~~~~ 198 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWG------------WRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHhCCHHHHhccc------------hHHHHHHHH
Confidence 77666653 2333 999998643
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-12 Score=124.98 Aligned_cols=147 Identities=19% Similarity=0.184 Sum_probs=124.1
Q ss_pred hcHHHHHHhcCCC---chhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhH
Q 018271 165 NNISQIGESLGYP---TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 240 (358)
Q Consensus 165 ~~l~~~~~~~G~s---~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l 240 (358)
...|.+.+++|++ ..+.++..+++.++..+|.++.|+++||+ |||+.+.++.++.+++.++.. .++...+
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~------Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF------GRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc------cchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 3567777888998 88899999999999999999999999999 677777778777777777666 5677788
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHH
Q 018271 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFL 320 (358)
Q Consensus 241 ~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~ 320 (358)
++.+++.|++.++..+....++.|.+|+++|+...++...+..+|. +++|.+++.+.+ |++.|+
T Consensus 184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~---------------wr~~~~ 247 (505)
T TIGR00898 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGL-VLLPLVAYFIPD---------------WRWLQL 247 (505)
T ss_pred HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhH---------------HHHHHH
Confidence 8899999999999999999999999999999999999988888888 477877655432 999999
Q ss_pred HHHHHHHHHHHHH
Q 018271 321 IMASVAFVGCLVA 333 (358)
Q Consensus 321 ~~~~~~~~~~~~~ 333 (358)
+.++..++..+..
T Consensus 248 ~~~i~~~~~~~~~ 260 (505)
T TIGR00898 248 AVSLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766554
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=114.28 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=110.6
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHH-HHhcCCC-chhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQI-GESLGYP-TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~G~s-~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
.+..++++.+|.++...++..........++|.+ .+++|++ ..+.+.+.++..+.+.+++++.|+++||++ +
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~ 272 (352)
T PF07690_consen 199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFG------R 272 (352)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------C
T ss_pred cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------c
Confidence 4556667777755555555555666788899988 5677999 788888999999999999999999999984 3
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHh
Q 018271 215 PSFIAITLATMSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 290 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~g 290 (358)
+...........+..+.+. ..+....++..++.|++.+...+....++.|.+|++++|+..|+.+....+|+. +|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-ig 351 (352)
T PF07690_consen 273 RRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGI-IG 351 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HC
Confidence 3333333333333333322 223345566778889988888899999999999999999999999999999984 67
Q ss_pred H
Q 018271 291 V 291 (358)
Q Consensus 291 p 291 (358)
|
T Consensus 352 P 352 (352)
T PF07690_consen 352 P 352 (352)
T ss_dssp H
T ss_pred C
Confidence 6
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-11 Score=115.23 Aligned_cols=157 Identities=17% Similarity=0.097 Sum_probs=126.3
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.+.++++.++...+..++.....+....++|.+.++ .|++..++++......++..++.++.|++.||+ +||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------~~~~ 322 (485)
T TIGR00711 249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI------DPRK 322 (485)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CcHH
Confidence 467888888888777777777777788889999886 599999999999999999999999999999999 6666
Q ss_pred HHHHHHHHHHHHHHHHH-h--c--CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH
Q 018271 217 FIAITLATMSVGHIVVA-S--G--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~--~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
.+.++..+.+++..++. . . +........++.|++.+..+........+..|++++|++.|+.+....+|+. +|+
T Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~ 401 (485)
T TIGR00711 323 LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS-IGT 401 (485)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH-HHH
Confidence 67777776666666554 1 1 2233455677888888877766667777889999999999999999999995 799
Q ss_pred HHHHHHHhhc
Q 018271 292 RIIGYIYDNV 301 (358)
Q Consensus 292 ~i~g~l~~~~ 301 (358)
.+.|.+.++.
T Consensus 402 ~i~g~~~~~~ 411 (485)
T TIGR00711 402 ALITTILTNR 411 (485)
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.8e-12 Score=109.70 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=118.4
Q ss_pred chhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHH-H
Q 018271 143 TLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA-I 220 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~-~ 220 (358)
.+.+|++...+++...+.+.++..-|.+.+ .+|+|+..++.+.+.....+.+..++.|.++||+| ++...+ .
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G------~n~~wv~~ 336 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYG------FNLWWVAS 336 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhc------ceehhHHH
Confidence 478999999999988888888888887766 55999999999988888888888999999999994 443333 3
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhh
Q 018271 221 TLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300 (358)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~ 300 (358)
+.+....+...+.. +.+.-+....+.|+.+...-...+..++.+.|.++.||++|+.....++|-. +-|+++|.+.|+
T Consensus 337 a~~~tl~~H~~l~F-t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla-~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 337 ACILTLLGHSGLFF-TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLA-FIPIIAGFIADG 414 (459)
T ss_pred HHHHHHHHhhhHHh-hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhh-HHhhhhheeecC
Confidence 33444444444432 2233456677788877766555777788888889999999999999999985 679999999998
Q ss_pred ccC
Q 018271 301 VAS 303 (358)
Q Consensus 301 ~g~ 303 (358)
.|+
T Consensus 415 ~g~ 417 (459)
T KOG4686|consen 415 DGS 417 (459)
T ss_pred CCc
Confidence 775
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=113.29 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=119.7
Q ss_pred hhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcCchhH
Q 018271 161 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNL 240 (358)
Q Consensus 161 ~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~~~~~l 240 (358)
..+...+|.+.+++|++.++.++..+...++..++.++.|+++||+ +||+.+.++.++.+++.++...++...+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~~~~~~~~l 90 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF------GEERSVAAGLLLIAAGILIRSAPGTALL 90 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------CchHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3456688999999999999999999999999999999999999999 5556666666665555554434555667
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHH
Q 018271 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFL 320 (358)
Q Consensus 241 ~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~ 320 (358)
++.+++.|++.+...+..+.++.|.++ ++|+++.|+.+.+..+|.. ++|.+.+.+.+..+. .|+..|.
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-i~~~~~~~l~~~~~~----------~w~~~f~ 158 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAA-LAAAATVPLAQHSGG----------HWQQALA 158 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh----------hHHHHHH
Confidence 778888999888877777888888886 6899999999999999984 788888888776431 1888888
Q ss_pred HHHHHHHHH
Q 018271 321 IMASVAFVG 329 (358)
Q Consensus 321 ~~~~~~~~~ 329 (358)
+.+++.++.
T Consensus 159 ~~~~~~~~~ 167 (355)
T TIGR00896 159 WWALPALLA 167 (355)
T ss_pred HHHHHHHHH
Confidence 776654443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-10 Score=112.06 Aligned_cols=156 Identities=8% Similarity=-0.063 Sum_probs=124.8
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.+.+|++.++...+..++.....++...++|.+.+. +|+++.+++.......++..++.++.|++.||+ ++|.
T Consensus 253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~------g~~~ 326 (495)
T PRK14995 253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL------GLRL 326 (495)
T ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CchH
Confidence 567888888877777777776777777888988875 699999999999999999999999999999999 5556
Q ss_pred HHHHHHHHHHHHHHHHH-h---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 217 FIAITLATMSVGHIVVA-S---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
.+..+.++.+++.+++. . .+....+...++.|++.|...+.....+.+..|++++|.+.++.+....+|+. +|+.
T Consensus 327 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~-~G~a 405 (495)
T PRK14995 327 VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG-LGIA 405 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH-HHHH
Confidence 66666666666555443 1 22334556678889998887777777888889999999999999999999984 7898
Q ss_pred HHHHHHhh
Q 018271 293 IIGYIYDN 300 (358)
Q Consensus 293 i~g~l~~~ 300 (358)
+.|.+++.
T Consensus 406 i~g~i~~~ 413 (495)
T PRK14995 406 IFGLLLSR 413 (495)
T ss_pred HHHHHHHH
Confidence 99988764
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-11 Score=113.76 Aligned_cols=147 Identities=13% Similarity=0.033 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~ 224 (358)
.++.+.+.++............+|.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.+..+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~------G~r~~l~~g~~~ 100 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL------SYKAGIITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHH
Confidence 45556666666666666777789999889999999999999999999999999999999999 777888888888
Q ss_pred HHHHHHHH---H-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 018271 225 MSVGHIVV---A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 298 (358)
Q Consensus 225 ~~~~~~l~---~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~ 298 (358)
.+++.+++ . .++...+++.+++.|++.+......+.++.|..+.++++...++.+....+|.. ++|.+++.+.
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~-~g~~~g~~l~ 177 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 88887664 2 355667888899999999999888899988876666666688999888889984 7888777654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=116.63 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=133.5
Q ss_pred hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhh
Q 018271 173 SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCY 251 (358)
Q Consensus 173 ~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~ 251 (358)
+++-+.++.++++....+.+.+..++.|.+.||+ |++..+.+++.++....++++ ..++..+++.+.++|++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i------Gy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI------GYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGS 173 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh------ccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhH
Confidence 3466678899999999999999999999999999 777889999999999999988 567788999999999999
Q ss_pred hcccccHHHHHHHhhCCcc-hHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 252 GCQWSLMPTITYEIFGVGH-MGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 252 g~~~~~~~~~~~e~f~~~~-~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
+..+....++++|.||.++ ||+++|+...+.++|. ++||+.+|.+||..| +...|.++++++++..
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~-lvgPpfGGilYe~~G------------k~aPFlVL~~v~Lld~ 240 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGV-LVGPPFGGILYEFAG------------KSAPFLVLAIVLLLDG 240 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccc-eecCCcccchHhhcC------------CcCcHHHHHHHHHHHH
Confidence 9999999999999999875 7999999999999999 589999999999998 9999999999999998
Q ss_pred HHHHHHHHHh
Q 018271 331 LVAFLLFIRT 340 (358)
Q Consensus 331 ~~~~~~~~~~ 340 (358)
.+.+++...+
T Consensus 241 ~L~l~vi~p~ 250 (464)
T KOG3764|consen 241 ALQLLVIEPT 250 (464)
T ss_pred HHHHheeCcc
Confidence 8776665443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=129.27 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=126.7
Q ss_pred hHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhc------
Q 018271 162 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG------ 235 (358)
Q Consensus 162 ~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~------ 235 (358)
.....++++.+++|+++++.+++.+.+.++..++.++.|++.||+ +|++++.++.++++++.++++.+
T Consensus 51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~------~r~~~i~~g~ll~~lg~ll~alphf~~~~ 124 (633)
T TIGR00805 51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL------HRPIVIGIGCAIMGLGSFLLSLPHFLSGR 124 (633)
T ss_pred HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc------CcceEEEecHHHHHHHHHHHhChHHhcCC
Confidence 344567788889999999999999999999999999999999998 55566667777777777665421
Q ss_pred --------------------------------------------C--chhHHHHHHHHHhhhhcccccHHHHHHHhhCCc
Q 018271 236 --------------------------------------------F--PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVG 269 (358)
Q Consensus 236 --------------------------------------------~--~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~ 269 (358)
+ ...+++.+++.|++.+..+++..+++.|.+|++
T Consensus 125 y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~ 204 (633)
T TIGR00805 125 YSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK 204 (633)
T ss_pred ccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc
Confidence 0 123567899999999999999999999999999
Q ss_pred chHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCC----CCccccc---c---chHHHHHHHHHHHHHHHHHHH
Q 018271 270 HMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE----GNSCNGT---H---CFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 270 ~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~----~~~~~g~---~---~~~~~f~~~~~~~~~~~~~~~ 334 (358)
+|+...|+.+.+..+|.. +|++++|++.+.+..-. +..-..+ + +|+..|++.+++.++.+++.+
T Consensus 205 ~~~~~~~i~~~~~~iG~~-lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 205 NSPLYIGILESIAVFGPA-FGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred ccHHHHHHHHHHHHhhhH-HHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999994 89999999886542100 0000111 1 266678887777777665433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-11 Score=115.53 Aligned_cols=180 Identities=11% Similarity=0.028 Sum_probs=131.4
Q ss_pred hhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHH
Q 018271 141 VCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAI 220 (358)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~ 220 (358)
.++++.+.++..++............+|.+.++.|.+.++.+.+ +...... ++.+++|.++||+.+.+.-.||..+..
T Consensus 9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLA 86 (491)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHH
Confidence 34555666666666666666677778999999999998888886 3333332 689999999999833221023445666
Q ss_pred HHHHHHHHHHHHH-h---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHH
Q 018271 221 TLATMSVGHIVVA-S---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 296 (358)
Q Consensus 221 ~~~~~~~~~~l~~-~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~ 296 (358)
+.+..+++..+++ . .+.+.+.+..++.+++.+.......++..|.+|+++|+++.++...+..+|. ++++.+.++
T Consensus 87 ~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~-llg~~l~~~ 165 (491)
T PRK11010 87 TQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAM-LVSGGLALW 165 (491)
T ss_pred HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6666666655544 2 2334566677788888887778888999999999999999999999999998 488889999
Q ss_pred HHhh-ccCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 297 IYDN-VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 297 l~~~-~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
+.++ .| |+..|++.+++.++..+..++
T Consensus 166 l~~~~~G------------Wr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 166 LADRYLG------------WQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred HHhcccC------------HHHHHHHHHHHHHHHHHHHHh
Confidence 8884 45 999999999887776554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-10 Score=105.83 Aligned_cols=151 Identities=11% Similarity=-0.016 Sum_probs=94.9
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.++++.++...+..++.....+.+..+.|.+.. ..|++..+.+.+.+...++..+++++.|++.||+ +||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------g~~ 260 (377)
T PRK11102 187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV------GAL 260 (377)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHH
Confidence 456677888777666666555555666667776655 4699999999999999999999999999999999 555
Q ss_pred HHHHHHHHHHHHHH---HHHH-hc-CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHh-hhHHHHH
Q 018271 216 SFIAITLATMSVGH---IVVA-SG-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIAS-PVGSYVC 289 (358)
Q Consensus 216 ~~~~~~~~~~~~~~---~l~~-~~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~-~ig~~i~ 289 (358)
..+..+..+..+.. +... .. +.+...+...+.+.+.+.........+.|..| +.+|+..++.+... .+|+ +.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~-~~ 338 (377)
T PRK11102 261 NMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGA-IV 338 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHH-HH
Confidence 55555544332222 2221 11 22223333333333333334444456677766 78899998876543 4455 45
Q ss_pred hHHHHH
Q 018271 290 SVRIIG 295 (358)
Q Consensus 290 gp~i~g 295 (358)
++++.+
T Consensus 339 g~~~~~ 344 (377)
T PRK11102 339 GALLSL 344 (377)
T ss_pred HHHHHh
Confidence 555433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-10 Score=106.78 Aligned_cols=152 Identities=12% Similarity=0.129 Sum_probs=91.8
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
++.++++.++...+...+.......+..+.|.+.+ ++|++..+.+.+.+...+++.+++++.+++.||+ +||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~------g~~~ 270 (392)
T PRK10473 197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF------KPRT 270 (392)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHHH
Confidence 34567777766555444444444445556676655 5699998889889999999999999999999999 5556
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcch-HHHHHHHHHHhhhHHHHHhHHHH
Q 018271 217 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM-GTIFNTIAIASPVGSYVCSVRII 294 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~-g~~~g~~~~~~~ig~~i~gp~i~ 294 (358)
.+.++..+..++.+++. .......+....+.+.+.+..++. ....+..|.+++ |.+.++ ..++. ..++.++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~----~~~~~-~~g~~~~ 343 (392)
T PRK10473 271 LMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRAGVASST----LGIAQ-VCGSSLW 343 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHH----HHHHH-HHHHHHH
Confidence 66666666555555444 222223333333434433333222 333445554444 334433 34444 2556677
Q ss_pred HHHHhhcc
Q 018271 295 GYIYDNVA 302 (358)
Q Consensus 295 g~l~~~~g 302 (358)
+++.++.|
T Consensus 344 ~~l~~~~g 351 (392)
T PRK10473 344 IWLAAVLG 351 (392)
T ss_pred HHHHHHhc
Confidence 77877776
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-11 Score=114.12 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=121.1
Q ss_pred HHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHH
Q 018271 152 AMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIV 231 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l 231 (358)
.++............+|.++++.|+|.++.+++..+... .+..+++|+++||+..+..-.||.++.++..+.+++..+
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 344444444556778999999999999999998666655 588999999999993211102344566666666655555
Q ss_pred HH-hc---CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc-cCCCC
Q 018271 232 VA-SG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV-ASGEG 306 (358)
Q Consensus 232 ~~-~~---~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~-g~~~~ 306 (358)
+. .. +.+.+++..++.+++.....+...++++|.+|+++|+++.++...+..+|. ++++.+.+.+.+.. |
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~-i~g~~l~~~l~~~~~g---- 159 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAM-LVSGGLALWLADRVLG---- 159 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHH-HHHhHHHHHHHhcccC----
Confidence 44 22 233344455566766666777888999999999999999999999999998 47888888888864 5
Q ss_pred CccccccchHHHHHHHHHHHHHHHHH
Q 018271 307 NSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 307 ~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
|+..|++.+++.++..+.
T Consensus 160 --------w~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 160 --------WGNTYLLMAGLMLAGALT 177 (402)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 999999988877665543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-10 Score=108.48 Aligned_cols=159 Identities=10% Similarity=0.002 Sum_probs=116.7
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.+++++++.++...+..++.......+....|++.++ +|.+....++......++..++.++.++++||+ +++
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~------g~~ 294 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI------GKK 294 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcH
Confidence 5678899999888887777777666677777777774 477655554444445677888999999999999 555
Q ss_pred HHHHHHHHHHHHHHHHHHh-c--CchhHHHHHHHHHhhhhcccccHHHHHHHhhCC-------cchHHHHHHHHHHhhhH
Q 018271 216 SFIAITLATMSVGHIVVAS-G--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-------GHMGTIFNTIAIASPVG 285 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~-~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~-------~~~g~~~g~~~~~~~ig 285 (358)
..+.++.++.+++.+++.. . +.+.+++..++.|++.+...+...++.+|..+. +..|..+|+.+....+|
T Consensus 295 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 295 NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 6666676666666555442 2 233444556778888888887778887777653 34699999999999999
Q ss_pred HHHHhHHHHHHHHhhcc
Q 018271 286 SYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 286 ~~i~gp~i~g~l~~~~g 302 (358)
.. +|+.+.|.+.+..|
T Consensus 375 ~a-ig~~i~g~~l~~~G 390 (448)
T PRK09848 375 QA-IGGSIPAFILGLSG 390 (448)
T ss_pred HH-HHHHHHHHHHHHcC
Confidence 95 79999999888765
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-10 Score=106.45 Aligned_cols=174 Identities=10% Similarity=-0.003 Sum_probs=121.7
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc--CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL--GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
++.+|++.++...+..++..+......++++.+.++. +.+...++.+.+....+..+||++++++.||+ +++
T Consensus 226 ~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~------~~~ 299 (410)
T TIGR00885 226 SRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL------AAH 299 (410)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CHH
Confidence 4567888888878788887777777788899998865 44444556667777788899999999999999 555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHH
Q 018271 216 SFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g 295 (358)
+.+.++..+.++..++....+........++.|++.+..++...+...+..+++......++.... +|+. +.|++.|
T Consensus 300 ~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga-~~p~l~G 376 (410)
T TIGR00885 300 KVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGG-IVPPLQG 376 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccc-hHHHHHH
Confidence 556666666665555554332333456677888899999999999999999876654455554433 7775 6799999
Q ss_pred HHHhhccCCCCCccccccchHHHHHHHHHHH
Q 018271 296 YIYDNVASGEGNSCNGTHCFMLSFLIMASVA 326 (358)
Q Consensus 296 ~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~ 326 (358)
++.|..+... .| +++..|++...+.
T Consensus 377 ~~~d~~~~~~----~~--~~~~~~~~~~~~~ 401 (410)
T TIGR00885 377 FIIDMKEIAA----AP--AVNTSFILPLLCF 401 (410)
T ss_pred HHHHHhcccc----cC--ccchHHHHHHHHH
Confidence 9999652100 00 1777777654433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-10 Score=105.03 Aligned_cols=158 Identities=10% Similarity=0.039 Sum_probs=108.7
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
+.++.++++++|...+...+.....+.+..+.|.+.++.|++..+.++......++..+|+++.+++.||+++ +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~------~ 268 (401)
T PRK11043 195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGG------E 268 (401)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------H
Confidence 3566778888876666555555555667788899988899999988888888888899999999999999853 3
Q ss_pred HHHHHHH---HHHHHHHHHHHh---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 216 SFIAITL---ATMSVGHIVVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 216 ~~~~~~~---~~~~~~~~l~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
....... .+..+...+... .+.....+...+.|++.+..++.......|.+| +++|++.|+.+.....++. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~-~ 346 (401)
T PRK11043 269 QLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCF-L 346 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHH-H
Confidence 3222222 222222222221 222333444566777777777777667667766 5789999999988777774 6
Q ss_pred hHHHHHHHHhhc
Q 018271 290 SVRIIGYIYDNV 301 (358)
Q Consensus 290 gp~i~g~l~~~~ 301 (358)
++.+.|.+.|..
T Consensus 347 ~~~~~g~l~~~~ 358 (401)
T PRK11043 347 ASLLVSALISTP 358 (401)
T ss_pred HHHHHHHccCCC
Confidence 788888887743
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-11 Score=116.91 Aligned_cols=176 Identities=13% Similarity=0.092 Sum_probs=142.5
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
+..+|++.|..+|.+.++...+.......++.++.+..-|+...+++.+...+...+..++.|.++||+ .||++
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~------drrri 77 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF------DRRRI 77 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cchHH
Confidence 345789999999999999888888777778878777777888888888899999999999999999999 66666
Q ss_pred HHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH
Q 018271 218 IAITLATMSVGHIVVA------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~------~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
++.+.++.++...++. ..+.+.+++..++.|++.....+...++++|+.|+++...+.++.++..+++. ++||
T Consensus 78 li~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar-~iGP 156 (524)
T PF05977_consen 78 LILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIAR-IIGP 156 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH-hccc
Confidence 7666655544332221 23456677788899999888889999999999999999999999999999998 5899
Q ss_pred HHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 292 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 292 ~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
.++|.++...| ..++|.+.++..++..++
T Consensus 157 algG~Lva~~G------------~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 157 ALGGILVAFFG------------AAAAFLINALSFLISILA 185 (524)
T ss_pred hHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 99999999887 778888887766665443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-11 Score=114.00 Aligned_cols=159 Identities=9% Similarity=-0.039 Sum_probs=115.7
Q ss_pred HHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHH
Q 018271 153 MLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV 232 (358)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~ 232 (358)
+++...+...+...+|.+.+++|.|..+.++..++..+...++.+++|.++||++|++. .++.... ...... ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~-~~~~~~~-~~~~~~--~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIP-ALRLLAL-LTLLFA--VAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHH-HHHHHHH-HHHHHH--HHHH
Confidence 33333444567778899999999999999999999999999999999999999965421 1222222 211111 1122
Q ss_pred H-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCcccc
Q 018271 233 A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG 311 (358)
Q Consensus 233 ~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g 311 (358)
. .++.+.+++.+++.|++.+...+...++..+. .++|+.++|.....+.+|. .+||+++|++.++.|
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~-~igp~lgg~l~~~~g--------- 156 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAF-VIGSALTGKLVSWFG--------- 156 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHH-HHHHHHHHHHHHHcC---------
Confidence 2 34556667778888888877777777777665 3567888888888888998 489999999999988
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 018271 312 THCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 312 ~~~~~~~f~~~~~~~~~~~ 330 (358)
|+..|++.++..++..
T Consensus 157 ---~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 157 ---EQAILWILTAGVASML 172 (382)
T ss_pred ---hhHHHHHHHHHHHHHH
Confidence 9999988776544443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-11 Score=110.82 Aligned_cols=176 Identities=14% Similarity=0.099 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
+.+|+-++.+.++....+.+....+.+.+++|+|..|.++++++..+.+.+.|+..|.+.||+| +|++ ..++.+
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG-----gR~~-~~~s~~ 87 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG-----GRKW-TILSML 87 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC-----chHH-HHHHHH
Confidence 4555555555555444455555556666789999999999999999999999999999999996 5544 455555
Q ss_pred HHHHHHHHHH-h---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHh
Q 018271 224 TMSVGHIVVA-S---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 299 (358)
Q Consensus 224 ~~~~~~~l~~-~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~ 299 (358)
+..+.++... . ++.+.+++..++.|++. +.++...+.++..||+|+.|++.|+.. .+++|.. +..+++..+..
T Consensus 88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a-v~q~~~P~v~~ 164 (417)
T COG2223 88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA-VAQLVAPLVAV 164 (417)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHH-HHHHHHHHHHH
Confidence 5555555444 2 23347788888888764 567888889999999999999999997 6666664 45555555555
Q ss_pred hccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 300 NVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 300 ~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
..+. ..|+.+..+..+..++.++..++..
T Consensus 165 ~~g~---------~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 165 AFGF---------LAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred HHhh---------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4440 0178888888887777776666554
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.8e-11 Score=114.07 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=99.2
Q ss_pred ccccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcC
Q 018271 133 EDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMG 211 (358)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~ 211 (358)
+...+++.++++..|.+.++.++.....+++.+|+|.+.++ .|+|..+++.+.+.+.++++++.++.|+++||+. ..
T Consensus 262 ~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~--~~ 339 (495)
T KOG2533|consen 262 KWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK--TI 339 (495)
T ss_pred CHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh--hh
Confidence 44568899999999999999999999999999999999998 5799999999999999999999999999999952 00
Q ss_pred CchHHHHHHHHH-HHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcch-HHHHHHHHHHhhhHH
Q 018271 212 WERPSFIAITLA-TMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM-GTIFNTIAIASPVGS 286 (358)
Q Consensus 212 ~gr~~~~~~~~~-~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~-g~~~g~~~~~~~ig~ 286 (358)
..++........ ...++.+.+. ................+.+...+......++....+.+ -+..+....+.+.++
T Consensus 340 ~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~ 417 (495)
T KOG2533|consen 340 FARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAG 417 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHH
Confidence 044554444433 3334434443 22232333323333333333444444555555544433 333333344444444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-11 Score=126.66 Aligned_cols=174 Identities=11% Similarity=0.083 Sum_probs=122.3
Q ss_pred HhhhchhHHHHHHHHHHhhhhhhhHHhcHHHH----H-HhcCCCc-hhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQI----G-ESLGYPT-SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~-~~~G~s~-~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
.++++++++.+++..++.....+.....++.+ . .+.+.+. ...++..+++.+...+..+++|+++||+
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~------ 79 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY------ 79 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc------
Confidence 45677778777777777665544333222222 1 1222222 3456677788899999999999999999
Q ss_pred chHHHHHH---H-HHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHH
Q 018271 213 ERPSFIAI---T-LATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYV 288 (358)
Q Consensus 213 gr~~~~~~---~-~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i 288 (358)
+||+++.. . .+....+.+.+...+.+.+++.+++.|++.+...+...+++++++++++++.++|+.+++..+|. +
T Consensus 80 ~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~-~ 158 (1140)
T PRK06814 80 DKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAI-L 158 (1140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHH-H
Confidence 45444321 1 11122222222246677888999999999999999999999999999999999999999999999 5
Q ss_pred HhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHH
Q 018271 289 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL 331 (358)
Q Consensus 289 ~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~ 331 (358)
+||+++|++.+..+ |++.|...+.+.+++.+
T Consensus 159 igp~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 159 LGTIIGGLATISGN------------FVILVALLMGIAVLGWL 189 (1140)
T ss_pred HHHHHHHHHHhccc------------cHHHHHHHHHHHHHHHH
Confidence 89999999999776 98888544444444443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-12 Score=116.22 Aligned_cols=182 Identities=17% Similarity=0.037 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHH--------HHHHHH-HHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINS--------LVSLWS-IWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~--------~~~~~~-i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
........|+...+.|....+...+.+..|+.+.+... .-.+.. .+.+.|..+...++|++ ||++
T Consensus 306 Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i------GRk~ 379 (538)
T KOG0252|consen 306 LLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII------GRKY 379 (538)
T ss_pred HHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh------hhHH
Confidence 33445556677777888888888999988877655433 112222 33444888889999999 8888
Q ss_pred HHHHHHHHHHHHHHHHH-hcC-c---hhHHH-HHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHh
Q 018271 217 FIAITLATMSVGHIVVA-SGF-P---GNLYV-GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 290 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~-~---~~l~~-~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~g 290 (358)
..+.+++++++..+.++ ..+ . ..+.+ ..+.+-++.-+..+....+.+|.||++.||+.+|+....+.+|+ ++|
T Consensus 380 iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GA-ivg 458 (538)
T KOG0252|consen 380 IQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGA-IVG 458 (538)
T ss_pred HHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchH-HHH
Confidence 89999999998888776 322 1 12222 22223334444455556778999999999999999999999999 578
Q ss_pred HHHHHHHHh-----hccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018271 291 VRIIGYIYD-----NVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQV 347 (358)
Q Consensus 291 p~i~g~l~~-----~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (358)
...++++.+ ..+ .+.+|++++++++++.+..+++ +|++++..+.
T Consensus 459 ~~~F~~~t~~~yp~~~g------------~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~lee 507 (538)
T KOG0252|consen 459 AFGFLYLTDHNYPPNIG------------VRNVFIILAGCMLLGILFTLLI-PETKGKSLEE 507 (538)
T ss_pred HHHhhHhhhccCCcccc------------chHHHHHHHHHHHHhHheeEEe-ecccccCHHH
Confidence 888888877 333 8999999999999998665444 4877765443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-10 Score=104.55 Aligned_cols=176 Identities=11% Similarity=-0.016 Sum_probs=114.6
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
+.+++++.+.......++...........+|.+.+ .+|+++.+.+++.+...++..+|.++.+++.||. +++.
T Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~------~~~~ 272 (393)
T PRK11195 199 RVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE------TVLR 272 (393)
T ss_pred HHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC------cccc
Confidence 45566666554443333333333444455566665 4699999999999999999999999999998876 3333
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcc-hHHHHHHHHHHhhhHHHHHhHHHH
Q 018271 217 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH-MGTIFNTIAIASPVGSYVCSVRII 294 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~-~g~~~g~~~~~~~ig~~i~gp~i~ 294 (358)
.+..+.. .++..+++. .++.+...+..++.|++.+.......+.+.+.-|++. +|++.++.++...++.. ++..+.
T Consensus 273 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~-~~~~~~ 350 (393)
T PRK11195 273 VLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAML-LMLGLY 350 (393)
T ss_pred hHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHH-HHHHHH
Confidence 4444432 233333333 3334444556667888877766667777777655444 79999999999999984 778777
Q ss_pred HHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 018271 295 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 295 g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~ 334 (358)
+.+ +..| -+..+++.+...++++.+..
T Consensus 351 ~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 351 SLL-VKLG------------VPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHH-HHcC------------CCHHHHHHHHHHHHHHHHHH
Confidence 755 5666 66676666665555554443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=125.17 Aligned_cols=155 Identities=10% Similarity=0.097 Sum_probs=116.5
Q ss_pred HhhhchhHHHHHHHHHHhhhhhhhHHhcH-HHHHHhcCCCc--hhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNI-SQIGESLGYPT--SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~G~s~--~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
..++++.++.+++..++......+....+ +.+..+++.+. ...+++.+++.++..++.+++|+++||+ +||
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~------grk 77 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF------SKN 77 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc------cHH
Confidence 34667788877777777655544433333 33444555543 3457778899999999999999999999 666
Q ss_pred HHHHHHHHHHHHHHHHH---H-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH
Q 018271 216 SFIAITLATMSVGHIVV---A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~---~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
+++..+.++.++..++. . ..+.+.+++.+++.|++.+...+...++++|++|+++|+.++|+...+..+|. ++||
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~-~lg~ 156 (1146)
T PRK08633 78 RVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAI-LAGT 156 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHH-HHHH
Confidence 66666655444333322 2 34566778889999999998888999999999999999999999999999999 5899
Q ss_pred HHHHHHHhh
Q 018271 292 RIIGYIYDN 300 (358)
Q Consensus 292 ~i~g~l~~~ 300 (358)
+++|++.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 999999876
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-15 Score=143.86 Aligned_cols=263 Identities=13% Similarity=0.084 Sum_probs=147.8
Q ss_pred chhHHHHHHHHHHHHHhhhhHHhhhhhhhccccCCCCcccCCCCCCCCCCCcccccccCCCCcccccCCCCCccchhhhh
Q 018271 45 PLWARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEF 124 (358)
Q Consensus 45 ~~~~~~~~~~~~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (358)
+|+...+..++.++.++....+||+|+|+..+++.++ .++.+.+...++ ..+ ++.++..++
T Consensus 170 Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~----A~~~l~~~~~~~----~~~---~~~~~~~~~-------- 230 (451)
T PF00083_consen 170 WRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEE----AEKVLRKLRGKE----IED---EEIEEIKAE-------- 230 (451)
T ss_pred ccccccccccccccccccccccccccceecccccccc----cccccccccccc----ccc---ccccccccc--------
Confidence 4666666666666677777889999999977665442 222222211110 000 000000000
Q ss_pred ccccccccccccHHHhhhchh----HHHHHHHHHHh-hhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHh
Q 018271 125 DDKKLKDEEDMNILQSVCTLN----FWLLFVAMLCG-MGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGG 199 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~ 199 (358)
.++. .+.+.++++.++++. +........+. .........+.+.+.+..|.+.. ........+...++.++.
T Consensus 231 -~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 306 (451)
T PF00083_consen 231 -KKES-QESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLA 306 (451)
T ss_pred -cccc-cccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccc
Confidence 0000 000123344444422 22222222222 22223445566777777787766 233345556677788888
Q ss_pred HHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-----h-cC----chhHHHHHHHHHhhhh-cccccHHHHHHHhhCC
Q 018271 200 GYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-----S-GF----PGNLYVGSIIVGVCYG-CQWSLMPTITYEIFGV 268 (358)
Q Consensus 200 G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-----~-~~----~~~l~~~~~l~g~~~g-~~~~~~~~~~~e~f~~ 268 (358)
.++.||+ |||..+..+..+.+++.+.+. . .+ ....++...+..++.+ +..+..+.+.+|+||+
T Consensus 307 ~~~~~~~------GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt 380 (451)
T PF00083_consen 307 IFLIDRF------GRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT 380 (451)
T ss_pred ccccccc------ccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccc
Confidence 8999999 566556666555555444331 1 11 1112222222222333 3345566888999999
Q ss_pred cchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018271 269 GHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVV 348 (358)
Q Consensus 269 ~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (358)
+.|+++.|+....+.++++ ++|.+...+.+..+ ....+.+.+++++++.+..+++.+|+|++..++.
T Consensus 381 ~~R~~~~~~~~~~~~i~~~-i~~~~~~~~~~~~~------------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei 447 (451)
T PF00083_consen 381 KVRSTGIGLSYAVGRIGGF-IIPFLFPYLFNNLG------------GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI 447 (451)
T ss_pred ccccccccccccccccccc-cccccccccccccc------------ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH
Confidence 9999999999999999885 67877777776654 2456667777777777777777889988765544
Q ss_pred H
Q 018271 349 L 349 (358)
Q Consensus 349 ~ 349 (358)
.
T Consensus 448 ~ 448 (451)
T PF00083_consen 448 Q 448 (451)
T ss_pred H
Confidence 3
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=6e-10 Score=108.89 Aligned_cols=179 Identities=12% Similarity=0.084 Sum_probs=131.4
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.+...+++....+.+..++.......+...+|.+.++ +|.++...|++.+..++|+++|.++.+++.+|+ ++.
T Consensus 211 ~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~------~~~ 284 (524)
T PF05977_consen 211 LRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL------SSR 284 (524)
T ss_pred HHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc------Ccc
Confidence 3444455655544443333333333455568888864 588999999999999999999999999888777 444
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHH
Q 018271 216 SFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 294 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~ 294 (358)
.++..+.+..+++++.++ ..+.+...+..++.|++.........+.+.+..|.+.||+.+++..+....+. .+|..+.
T Consensus 285 ~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~-~lGsll~ 363 (524)
T PF05977_consen 285 RLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM-PLGSLLW 363 (524)
T ss_pred hhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH-HHHHHHH
Confidence 556666666777666666 44555566677888888887777778888899999999999999987777666 4788999
Q ss_pred HHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 018271 295 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 295 g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~ 334 (358)
|.+.+..| .+.++.+.++..+++.++..
T Consensus 364 G~la~~~g------------~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 364 GFLADHFG------------VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHhC------------HHHHHHHHHHHHHHHHHHHH
Confidence 99999988 77888777766666555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=107.43 Aligned_cols=169 Identities=13% Similarity=0.020 Sum_probs=117.9
Q ss_pred hHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH-HHHHHHHHHHHHHHHHH-hc---C
Q 018271 162 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS-FIAITLATMSVGHIVVA-SG---F 236 (358)
Q Consensus 162 ~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~-~~~~~~~~~~~~~~l~~-~~---~ 236 (358)
.....+|.+.++.|+|.++.+++.+. .+...+ .+++|+++||+..|+. |||+ ++..+.++.++...++. .. +
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~-Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFF-GRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCC-CccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 34557889999999999999888655 444444 8999999999854332 5555 45556666665554444 22 2
Q ss_pred chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchH
Q 018271 237 PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFM 316 (358)
Q Consensus 237 ~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~ 316 (358)
.+.+....++.+++.+...+...++++|.+|+++|+.+.|+...+..+|. +++|.+++.+.+..+... ...++|+
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~l~~~l~~~~g~~~----~~~~~wr 157 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGM-LLSGSLALVLASPEFANT----GLITLWG 157 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHH-HHHHHHHHHHhhhccccc----ccccccH
Confidence 22344444556666666667778899999999999999999999999998 478999998887765210 1233499
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018271 317 LSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 317 ~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
..|++.+++.+++.+..++..+
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~ 179 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAK 179 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999888877776654443333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-09 Score=98.11 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=119.6
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
...++++++.++.-.++.|++.+.....-+|++.|+.+ .|.+..+++.+++.+..+.++||+++.++..|+ ..
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~------~~ 301 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI------KP 301 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH
Confidence 46788999999999999999999999999999999998 799999999999999999999999999999988 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHH
Q 018271 215 PSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 294 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~ 294 (358)
.+.+....++..+.++.....+....+...++.|++++..++...+...+..| ++-..+.++.-++ .+|+. +-|++.
T Consensus 302 ~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~ma-ivGGA-iiP~l~ 378 (422)
T COG0738 302 EKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMA-IVGGA-IIPPLQ 378 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeh-eecch-HHHHHH
Confidence 33444443333333333332222334456678899999999999999999998 4444444444333 34554 459999
Q ss_pred HHHHhhcc
Q 018271 295 GYIYDNVA 302 (358)
Q Consensus 295 g~l~~~~g 302 (358)
|++.|+.|
T Consensus 379 G~i~d~~g 386 (422)
T COG0738 379 GVIADMFG 386 (422)
T ss_pred HHHHHhhh
Confidence 99999987
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-09 Score=101.43 Aligned_cols=160 Identities=9% Similarity=0.052 Sum_probs=107.1
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
..++.+||+.++.+.+..++.............++.+..--+....+.+.....+..+++.+++++++||+ +++
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~------gk~ 294 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF------DRV 294 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ChH
Confidence 45677899998888777666544443333333444443321233334455566678889999999999999 444
Q ss_pred HHHHHHHHHHHHHHH-HHH--hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhC-------CcchHHHHHHHHHHhhhH
Q 018271 216 SFIAITLATMSVGHI-VVA--SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-------VGHMGTIFNTIAIASPVG 285 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~-l~~--~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-------~~~~g~~~g~~~~~~~ig 285 (358)
..+..+.++.++..+ ++. ..+...+++..++.|++.+...++.+++++|..+ .+..|..+|+.+....+|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg 374 (444)
T PRK09669 295 RAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG 374 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence 545544443333222 222 2233445666778899999888888999988864 344577889999999999
Q ss_pred HHHHhHHHHHHHHhhcc
Q 018271 286 SYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 286 ~~i~gp~i~g~l~~~~g 302 (358)
.. +||.+.|.+++..|
T Consensus 375 ~a-lg~~i~g~ll~~~G 390 (444)
T PRK09669 375 LA-IGGAVVGWILAWVD 390 (444)
T ss_pred HH-HHHHHHHHHHHHcC
Confidence 95 89999999998776
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-10 Score=105.62 Aligned_cols=142 Identities=16% Similarity=0.160 Sum_probs=101.3
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.++++++|.+.+..++.....+.+..++|.+.++ +|++..+++.+.++..+.+.+++++.|+++||+++ |
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~------~ 291 (366)
T TIGR00886 218 QLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG------A 291 (366)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc------c
Confidence 4567788889988888777777777788889988875 59999999999999999999999999999999953 3
Q ss_pred HHHHHHHHHHHHHHHHHH--hc---CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhH
Q 018271 216 SFIAITLATMSVGHIVVA--SG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVG 285 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~--~~---~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig 285 (358)
..+..+....+.+..++. .. +....++...+.+++.|...+...+++++.+| +++|+.+|+.+..+.+|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 292 RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 333333333333333322 22 22333334444555555556667778888887 68999999998887765
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-09 Score=102.47 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=126.6
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc-CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
..++.++++.++.++...++............+++.++. |.+ ...+.+..+..+++.++.+++++++||+ ++
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~------gk 289 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF------GK 289 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc------cc
Confidence 467788899999888888888777777777778888764 555 5567777888999999999999999999 44
Q ss_pred HHHHHHHHHHHHHHHHHHH-h--cCchhHHHHHHHHHhhhhcccccHHHHHHHhhC-------CcchHHHHHHHHHHhhh
Q 018271 215 PSFIAITLATMSVGHIVVA-S--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-------VGHMGTIFNTIAIASPV 284 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~-~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-------~~~~g~~~g~~~~~~~i 284 (358)
+..+..+.++.+++.+++. . .+.+.+++..++.|++.+..+...+++.+|..+ .+..|..+|+.+....+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 290 KKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI 369 (428)
T ss_pred eeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence 4556667777776666554 3 466778888899999999999888999888765 34568999999999999
Q ss_pred HHHHHhHHHHHHHHhhcc
Q 018271 285 GSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 285 g~~i~gp~i~g~l~~~~g 302 (358)
+.. +++.+.|.+.+..|
T Consensus 370 ~~~-la~~i~g~~l~~~G 386 (428)
T PF13347_consen 370 GQG-LAGAIVGLLLALVG 386 (428)
T ss_pred HHH-HHHHHHHHHHHHhC
Confidence 995 78889998888766
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=107.87 Aligned_cols=176 Identities=22% Similarity=0.281 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcC----CCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLG----YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G----~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
+.+|.++..-+.=-+++|++-..+-.|+. +.+ +|++++..+.+.+...--...+++||++||+- |++..+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L-----G~~~tI 95 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL-----GTRRTI 95 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhHHH
Confidence 46677777777778888888887776665 445 99999888888888777778999999999984 889999
Q ss_pred HHHHHHHHHHHHHHHhc---CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCc--chHHHHHHHHHHhhhHHHHHhHHH
Q 018271 219 AITLATMSVGHIVVASG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVG--HMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 219 ~~~~~~~~~~~~l~~~~---~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~--~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
..+.+++++++++++.. .+..+++...+.++|.|..=+....+++|+||++ +|-.++++..++.++|++ ++|++
T Consensus 96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl-~~p~i 174 (498)
T COG3104 96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL-IAPII 174 (498)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH-HHHHH
Confidence 99999999999998833 4677888889999999999899999999999976 366778888899999994 89999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
.+++.+++| |...|...++-+.++.+..++.+
T Consensus 175 ~~~~~~~~g------------~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 175 TGLLAINYG------------WHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHhhC------------HHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999998 99999999998888876654443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-10 Score=110.59 Aligned_cols=141 Identities=20% Similarity=0.239 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccH
Q 018271 180 AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLM 258 (358)
Q Consensus 180 ~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~ 258 (358)
+.+++.+...+++.+|.++.|+++|++ |||..+.++.++..++.++.+ ..+...+++++++.|++.|+...+.
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~------GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~ 163 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI------GRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcc
Confidence 348999999999999999999999999 788889999999999888887 6778889999999999999999999
Q ss_pred HHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 259 PTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 259 ~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
+.+++|+-|++.||...+.......+|.. ++ .+.|...+... ..||..+.+..+.+++.++. .++.+
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~-~~-~~~~~~~~~~~----------~~Wr~~~~~~~i~~~~~~~~-~~~~p 230 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGIL-LG-YCINYGTSKVY----------AGWRIPLGLALIPAVILALG-MLFLP 230 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHH-HH-HHHhhhhccCC----------ccHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 99999999999999999999988887774 55 56666554430 11998888887777777766 44443
Q ss_pred H
Q 018271 339 R 339 (358)
Q Consensus 339 ~ 339 (358)
+
T Consensus 231 e 231 (513)
T KOG0254|consen 231 E 231 (513)
T ss_pred C
Confidence 3
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=109.34 Aligned_cols=189 Identities=14% Similarity=0.037 Sum_probs=124.8
Q ss_pred HHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH-HHHHHHHHH
Q 018271 149 LFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI-AITLATMSV 227 (358)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~-~~~~~~~~~ 227 (358)
+....+...+.+.....+++.|.+++|.+....+++..+..+.+.+..++.|+++||...|. |||+.+ ..+.....+
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~--GRRrp~il~g~~~~~~ 86 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF--GRRRPFIAAGAALVAF 86 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC--CChHHHHHHHHHHHHH
Confidence 33344444555556677788899999999999999999999999999999999999632221 444444 434555555
Q ss_pred HHHHHH-hcCc-----------------hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcch--HHHHHHHHHHhhhHHH
Q 018271 228 GHIVVA-SGFP-----------------GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM--GTIFNTIAIASPVGSY 287 (358)
Q Consensus 228 ~~~l~~-~~~~-----------------~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~--g~~~g~~~~~~~ig~~ 287 (358)
+++++. ..+. ...++...+..++....++...++++|.+|+++| +.++++.+....+|+
T Consensus 87 ~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~- 165 (477)
T TIGR01301 87 AVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN- 165 (477)
T ss_pred HHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH-
Confidence 555544 2221 1112223344456666777788999999998865 678999999999999
Q ss_pred HHhHHHHHHH--HhhccCCC-CCccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018271 288 VCSVRIIGYI--YDNVASGE-GNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRT 340 (358)
Q Consensus 288 i~gp~i~g~l--~~~~g~~~-~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 340 (358)
++|+.+++.. .+..+-.. +..+.-...++..|++.+++.+++.++..+..+|.
T Consensus 166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 5888777764 22211100 01111122389999998888888887766655554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-08 Score=99.06 Aligned_cols=159 Identities=9% Similarity=-0.057 Sum_probs=109.9
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.+..++|+.++.+.+..++............+++.+...-+....+.+.+...++.+++.+++++++||+ ++|.
T Consensus 224 ~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~------gkk~ 297 (473)
T PRK10429 224 VALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSL------SRRI 297 (473)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CcHH
Confidence 4456688888877777776666555555555566554433445556666777788899999999999999 5555
Q ss_pred HHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhC-------CcchHHHHHHHHHHhh
Q 018271 217 FIAITLATMSVGHIVVA------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-------VGHMGTIFNTIAIASP 283 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~------~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-------~~~~g~~~g~~~~~~~ 283 (358)
.+.++..+.+++.+.+. ..+...+++..++.|++.+..+...+++++|..+ .+..|..+|..+....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K 377 (473)
T PRK10429 298 LWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK 377 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH
Confidence 55555444443333221 1223344556677888888888888888888833 4446778899999999
Q ss_pred hHHHHHhHHHHHHHHhhcc
Q 018271 284 VGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 284 ig~~i~gp~i~g~l~~~~g 302 (358)
+|.. +++.+.|.+.+..|
T Consensus 378 ~~~a-l~~~i~g~~l~~~G 395 (473)
T PRK10429 378 GGSA-FAAFFIGVVLGLIG 395 (473)
T ss_pred HHHH-HHHHHHHHHHHHcC
Confidence 9995 78999999998765
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-10 Score=110.25 Aligned_cols=147 Identities=15% Similarity=0.221 Sum_probs=125.5
Q ss_pred hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH---hcCchhHHHHHHHHHh
Q 018271 173 SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA---SGFPGNLYVGSIIVGV 249 (358)
Q Consensus 173 ~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~g~ 249 (358)
++++++++-+++.+....|.+++.+..|++.||+ |-|+++..+.++.++..++.. ..+.+.+++.++++|+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~------G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF------GARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL 140 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc------CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence 4578899999999999999999999999999999 445566667777777776654 2344567889999999
Q ss_pred hhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhh-ccCCCCCccccccchHHHHHHHHHHHHH
Q 018271 250 CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN-VASGEGNSCNGTHCFMLSFLIMASVAFV 328 (358)
Q Consensus 250 ~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~-~g~~~~~~~~g~~~~~~~f~~~~~~~~~ 328 (358)
+.|..++....+.+...|+++|++..++...+..+|.+ ++-+++|++-+. .| |+.+|++.+++.++
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v-~~mp~sg~lc~s~~G------------W~sifY~~g~~g~i 207 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTI-ITMPVSGLLCESSLG------------WPSIFYVFGIVGLI 207 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhccCCC------------CchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 677799999988 66 99999999999888
Q ss_pred HHHHHHHHHH
Q 018271 329 GCLVAFLLFI 338 (358)
Q Consensus 329 ~~~~~~~~~~ 338 (358)
-.++.+++..
T Consensus 208 ~~~~w~~~~~ 217 (466)
T KOG2532|consen 208 WFILWFLFYS 217 (466)
T ss_pred HHHHHHHHhc
Confidence 8876655543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.8e-09 Score=97.36 Aligned_cols=156 Identities=12% Similarity=0.016 Sum_probs=104.5
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.++++.+|...+..++.......+....+.+.++ +|++..+.+++.....++..++.++.+++.||++ +.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~------~~ 273 (394)
T PRK11652 200 YRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS------TL 273 (394)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 4566778887766555544444444445556667766 7999888888888888888888888888888874 22
Q ss_pred HHHH-HHHHHHHHHHHHHH-h--cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH
Q 018271 216 SFIA-ITLATMSVGHIVVA-S--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 216 ~~~~-~~~~~~~~~~~l~~-~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
.... .......+...... . .+.+.+....++.|++.+..++....+..|.+| +++|+..++.+....+|.. +++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~-~~~ 351 (394)
T PRK11652 274 MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSG-LAA 351 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHH-HHH
Confidence 2222 22222222222211 1 223345556677888888778888888888887 6789999999988899985 788
Q ss_pred HHHHHHHhh
Q 018271 292 RIIGYIYDN 300 (358)
Q Consensus 292 ~i~g~l~~~ 300 (358)
.+.|.+.+.
T Consensus 352 ~~~~~~~~~ 360 (394)
T PRK11652 352 LLSAMLPQT 360 (394)
T ss_pred HHHHHccCC
Confidence 888877554
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-10 Score=109.50 Aligned_cols=187 Identities=12% Similarity=0.086 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
+.++.+.+..+-...+.....++.+++.+..|.+... .....+..+.+.++..+..++.||+ |||.+++.+..
T Consensus 295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~------gRr~lll~s~~ 367 (513)
T KOG0254|consen 295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF------GRRKLLLFGAA 367 (513)
T ss_pred HHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHhHH
Confidence 3444445555555555567778899999988887554 5556677778888888889999999 78888888888
Q ss_pred HHHHHHHHHH-h----cC----c----hh-HHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 224 TMSVGHIVVA-S----GF----P----GN-LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 224 ~~~~~~~l~~-~----~~----~----~~-l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
.+.++.++++ . .. . +. +...++....+..+..++.+.+.+|.||.+.|+++.++....+.+.++++
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v 447 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI 447 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence 8888777654 1 11 1 11 11222222223334445666788999999999999999988877776533
Q ss_pred hHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHh
Q 018271 290 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL-VAFLLFIRTRRFYKQVVLR 350 (358)
Q Consensus 290 gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 350 (358)
....-.+.+..+ ....|...++.+.+..+ ...++.+|+|.+..+..++
T Consensus 448 -~~~~~~~~~~~~------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 448 -SFFFPFITEALG------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred -HHHHHHHHHhcc------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 112222222211 24566666666666665 5666778888776554433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=106.05 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=100.6
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhc
Q 018271 175 GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGC 253 (358)
Q Consensus 175 G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~ 253 (358)
+-+..-+|.+-+.+++...+.++.+|.+|||+ |||.++.++.+..++...+.+ ..+...+++.+++.|++.|-
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y------GRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRY------GRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN 137 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhh------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc
Confidence 33445678888999999999999999999999 888999999888888777776 55554555669999988864
Q ss_pred ccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHh
Q 018271 254 QWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 299 (358)
Q Consensus 254 ~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~ 299 (358)
.++..++++|+++++.|+.+++.++++..+|- ++||.|+|++.+
T Consensus 138 -l~v~rAiisdV~sek~r~l~ms~v~~a~~lGf-ilGPmIGgyla~ 181 (451)
T KOG2615|consen 138 -LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGF-ILGPMIGGYLAQ 181 (451)
T ss_pred -hHHHHHHHHhhcChhhccceeeeeehhhhcch-hhcchhhhHHHh
Confidence 46788999999999999999999999999998 699999999987
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-09 Score=107.19 Aligned_cols=269 Identities=13% Similarity=-0.004 Sum_probs=145.3
Q ss_pred HHhhcccCchhHHHHHHHHHHHHHhhhhHHhhhhhhhccccCCCCcccCCCCCCCCCCCccccccc-CCCCcccccCCCC
Q 018271 37 ILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFS-ASQDSVAYHELPG 115 (358)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 115 (358)
++..+...+||.++...++.++.+++.+..+|+|+|+..+++.++ ....+.+. .+.+. ..+.++..+..
T Consensus 225 ~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~----a~~~l~~~----a~~n~~~~~~~~~~~~~-- 294 (521)
T KOG0255|consen 225 GAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDE----AIKILKKI----AKLNGRKLSVKELLRLE-- 294 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHH----HHHHHHHH----HhhcCCCCCcHHHHHHH--
Confidence 333444467999988888888777777777799999988776532 11100000 00000 00000000000
Q ss_pred CccchhhhhccccccccccccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Q 018271 116 EESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLG 195 (358)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g 195 (358)
....+......+........++.+++....+...+..........-+......+|.+... ..++.......+
T Consensus 295 -----~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~---~~~~~~~~~~p~ 366 (521)
T KOG0255|consen 295 -----LLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYL---NFTLSGLVELPA 366 (521)
T ss_pred -----HHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHH---HHHHHHHHHhhH
Confidence 000000111111223456667765432222222222211122222333333444544322 223333355566
Q ss_pred hhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCc-h--hHHHHHHHHHhhhhcccccHHHHHHHhhCCcch
Q 018271 196 RFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFP-G--NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM 271 (358)
Q Consensus 196 ~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~-~--~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~ 271 (358)
....+...|++ ||+.....+..+..++++... .... . ...+...+..++.+..+.+.+.+..|++|+..|
T Consensus 367 ~~~~~~~~~~~------gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r 440 (521)
T KOG0255|consen 367 YFRNGLLLPEF------GRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVR 440 (521)
T ss_pred HHHHHHHHHHh------CcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 66668888998 788888888888888777766 3222 2 233344444456666667779999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018271 272 GTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRF 343 (358)
Q Consensus 272 g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 343 (358)
.++.+..+...++|+ +++|.+.-...... ....+.+.+.+..+..+++..+.++++.+
T Consensus 441 ~~~~~~~~~~~~~~~-i~ap~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 441 NTAVGAISAAARLGS-ILAPLFPLLLRQMF-------------PLLGLILFGWLALLLGLLSLLLLPETKGK 498 (521)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhc-------------ccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 999999999999999 47887665444422 12222224555556665655666666553
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=113.46 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=119.5
Q ss_pred cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhh
Q 018271 174 LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYG 252 (358)
Q Consensus 174 ~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g 252 (358)
...+.....+..+++.++..+|.+++|.++||+ |||.++..+.++..++.++.+ .++...+.+.+++.|++.+
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~------GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF------GRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGS 186 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc------ccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcc
Confidence 356667778888999999999999999999998 888999999999998888777 6788889999999999999
Q ss_pred cccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 253 CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 253 ~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
+.......+..|+++++.|+.+..+ ......++ .++|.+++++.. + ||+.+++.....++..+.
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~-~~~~~~~a~~~~--~------------Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGG-LMLPAGAAYITR--D------------WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred chhHHhHhhheeecCcchhhHHHHH-HHHHHHHH-HHHHHHHHHHHh--h------------HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 55666666 367888888887 2 999999998888877655
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=101.77 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=95.5
Q ss_pred HHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCch--------hHHHHHHHHHhhhhcccccHHH
Q 018271 190 IWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPG--------NLYVGSIIVGVCYGCQWSLMPT 260 (358)
Q Consensus 190 i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~--------~l~~~~~l~g~~~g~~~~~~~~ 260 (358)
+...++.++.|+++||+ |||+.+..+.++..++.++.. .++.. .+++.+++.|++.+...+....
T Consensus 46 ~~~~i~~~~~G~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 119 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRI------GRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL 119 (394)
T ss_pred HHhhhHHHHhhhhhhhh------hhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 34457899999999999 677778788888777777666 34432 3567788999999988888999
Q ss_pred HHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 261 ITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 261 ~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
++.|.+++++|+...++.+.+..+|.. +++.+.+.+....+.. -....+|+..|++.+++.+++.
T Consensus 120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 120 YLAEYAPPGKRGFYGSFQQVGAPVGLL-LAALTVLLLSYLLGDD----ALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HhhhcCCcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHH----HhhccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999984 7887776654311100 0001129999987776655543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=105.75 Aligned_cols=154 Identities=15% Similarity=0.199 Sum_probs=121.8
Q ss_pred HhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHH-HHHHhcCchhHHHHHHHHHhh
Q 018271 172 ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGH-IVVASGFPGNLYVGSIIVGVC 250 (358)
Q Consensus 172 ~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~-~l~~~~~~~~l~~~~~l~g~~ 250 (358)
++.++...+.+.+.+++.++.++|.+.++.+.||+ +-...+....+...+.. +.....+.+.+++.+++.|++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~------~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~ 147 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF------PLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLF 147 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC------ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46677788899999999999999999999999999 43333333333333333 333356788899999999999
Q ss_pred hhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 251 YGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 251 ~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
.++.++....+++..|++++||+.+|+.+....+|+ ++|++++..++...++ .+..+|++.|++.++++++..
T Consensus 148 es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~-i~ggliA~g~~~~~~~------~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 148 ESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN-IFGGLIAYGVFKLNGS------GGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred hcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh-HHHHHHHHHhhhhcCC------CCcCCceeehhHHHHHHHHHH
Confidence 999999999999999999999999999999999999 5888888877653332 134459999999999998888
Q ss_pred HHHHHHHH
Q 018271 331 LVAFLLFI 338 (358)
Q Consensus 331 ~~~~~~~~ 338 (358)
++++++.+
T Consensus 221 i~~f~~lp 228 (495)
T KOG2533|consen 221 IVVFFFLP 228 (495)
T ss_pred heEEEEec
Confidence 77655543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-10 Score=107.22 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=116.1
Q ss_pred hhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCc-
Q 018271 161 LATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFP- 237 (358)
Q Consensus 161 ~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~- 237 (358)
..+..+++++.. ++|++..+++++.++..+...+..++.|+++||.++|+. +||+.+..+....+++.+++. .++.
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G-rrr~~i~~~~~~~~i~~~~~~~~~~~~ 94 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG-KFRPWLLIGAIPFSIVLVLLFTTPDFS 94 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC-CcchhHHHhHHHHHHHHHHHHhCCCCC
Confidence 344445555554 679999999999999999999999999999999876653 346666667666666665554 2221
Q ss_pred -----hhHHHHHHHHHhhhhcccccHHHHHHHhhC-CcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCcccc
Q 018271 238 -----GNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG 311 (358)
Q Consensus 238 -----~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g 311 (358)
..+++..++.+.+.+.......++.+|+.+ +++|++..++.+.+..+|+. +++.+.+.+....+.. ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~-l~~~~~~~l~~~~~~~-----~~ 168 (437)
T TIGR00792 95 ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGL-LVAVIVLPLVSYFGGG-----DD 168 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC-----cc
Confidence 123344556676666666666778888874 57899999998888888874 5556666555433210 01
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 312 THCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 312 ~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
..+|+..+.+.+++.++..++.+...+
T Consensus 169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~ 195 (437)
T TIGR00792 169 KFGWFMFALVLALIGVVSLIICFFGTK 195 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 123999998888877777655444433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-08 Score=91.91 Aligned_cols=157 Identities=12% Similarity=-0.051 Sum_probs=97.4
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc-CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
..++.++++.+|...+..++.....+.+....|.+.++. |++..+.++.......+..++..+.+.+.++.. ++
T Consensus 210 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~-----~~ 284 (413)
T PRK15403 210 DFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPT-----EP 284 (413)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----ch
Confidence 356788999999888877777777777778889888865 999999988877777777777777666543321 22
Q ss_pred HHHHHHHHHHHHHHHHHH--H---hcCch-hHHHHHHHHHhhhhcccccHHHHHHHhhC-CcchHHHHHHHHHHhhhHHH
Q 018271 215 PSFIAITLATMSVGHIVV--A---SGFPG-NLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSY 287 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~--~---~~~~~-~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-~~~~g~~~g~~~~~~~ig~~ 287 (358)
+..... ..+..++..++ . ..+.. ..++..++.+++.+...+...... +.+ ...+|++.++.+.....+..
T Consensus 285 ~~~~~~-~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~a--l~~~~~~~G~a~a~~~~~~~~~~~ 361 (413)
T PRK15403 285 RFIWRA-VPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFT--LFSNNLPKGTVSASLNMVILMVMA 361 (413)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHH--hccCCCCCcHHHHHHHHHHHHHHH
Confidence 221111 11111111111 1 12222 234566667777766655544322 122 22478888888777776664
Q ss_pred HHhHHHHHHHHhhc
Q 018271 288 VCSVRIIGYIYDNV 301 (358)
Q Consensus 288 i~gp~i~g~l~~~~ 301 (358)
.++.+.|++.+..
T Consensus 362 -~~~~~~g~~~~~~ 374 (413)
T PRK15403 362 -VSVEIGRWLWFNG 374 (413)
T ss_pred -HHHHHHHHHHHcC
Confidence 6778888887763
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-09 Score=105.07 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=134.7
Q ss_pred HHHHHHHHHhhhhhhhHHh----cHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVN----NISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~----~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
|.+.++.|+.....+++.. ..+.+.++++.+..+.+++.++......+..++.+.+.||+ |.|.+.+++.
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf------g~R~v~i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF------GCRTVMIAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc------CchHHHHHHH
Confidence 5555555555444444333 45667778898888899999999999999999999999999 6667778888
Q ss_pred HHHHHHHHHHH-hcCchhHHH-HHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhh
Q 018271 223 ATMSVGHIVVA-SGFPGNLYV-GSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDN 300 (358)
Q Consensus 223 ~~~~~~~~l~~-~~~~~~l~~-~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~ 300 (358)
++..+++++.. .++.+.+++ ..++.|+|.+..+.....++..+|. ++|+.+.|+...+..+|.+++ |++.-++.+.
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~ 196 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVF-PPLLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeH-HHHHHHHHHH
Confidence 88888888776 556655554 5678889998888887778886665 889999999999999999755 7789999999
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 301 VASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 301 ~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
.| |++.+++.+.+.+-.++.....++
T Consensus 197 ~G------------~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 197 YG------------WRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hC------------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 98 999999999988777665555444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.3e-09 Score=99.14 Aligned_cols=172 Identities=15% Similarity=-0.000 Sum_probs=108.8
Q ss_pred HHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHH--HHHHHHHHHHhhhHh-HHHHHHHhhhcCCchHHHHHHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSL--VSLWSIWNFLGRFGG-GYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~--~~~~~i~~~~g~~~~-G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
..+...++............+|.++++.|+|.++.+++ ..+..+...+..++. ++.+||+|+| |..+....+
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r-----~~~i~~~~~ 78 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRR-----RSWVLPMQC 78 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcc-----hhHHHHHHH
Confidence 34455566666665667789999999999999999987 355566666666665 4466776432 222222222
Q ss_pred HHHHHHHHHH-h--c-C-chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 018271 224 TMSVGHIVVA-S--G-F-PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 298 (358)
Q Consensus 224 ~~~~~~~l~~-~--~-~-~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~ 298 (358)
+.......+. . . + ...+.....+.+++........-.+..|..+.+.++...+....+..+|. ++|+.+.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~-~~g~~~~~~l~ 157 (390)
T TIGR02718 79 LVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGF-FGGGAGTLVLF 157 (390)
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 2222122222 1 1 1 11222333333344444444555667787777777887777877778888 47888888999
Q ss_pred hhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 299 DNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 299 ~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
++.| |+..|++.+++.++..+..+++
T Consensus 158 ~~~g------------w~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 158 GKFG------------QRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHhC------------HHHHHHHHHHHHHHHHHHHHHc
Confidence 9888 9999999998887766655444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-07 Score=86.15 Aligned_cols=159 Identities=17% Similarity=0.106 Sum_probs=120.5
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
....++|+.+..+.+++++.........+...+|.+. +|.+.....+.......+..++.+++..+++|+ |+|
T Consensus 229 ~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~------gkk 302 (467)
T COG2211 229 FLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF------GKK 302 (467)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------chH
Confidence 4567789988888887777776666666666676663 477777776777777778888899999999999 667
Q ss_pred HHHHHHHHHHHHHHHHHH-hc--CchhHHHHHHHHHhhhhcccccHHHHHHHhh-------CCcchHHHHHHHHHHhhhH
Q 018271 216 SFIAITLATMSVGHIVVA-SG--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIF-------GVGHMGTIFNTIAIASPVG 285 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f-------~~~~~g~~~g~~~~~~~ig 285 (358)
.++.++.++.+++.+++. .+ +....++..++.+++.+...++.+++++|.. +.+.-|..+|.......+|
T Consensus 303 ~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g 382 (467)
T COG2211 303 KLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLG 382 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 778888887777776655 22 2344555667888899988899999988663 3345588889999999999
Q ss_pred HHHHhHHHHHHHHhhcc
Q 018271 286 SYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 286 ~~i~gp~i~g~l~~~~g 302 (358)
.. ++..+.|++.+..|
T Consensus 383 ~a-la~~~~g~~L~~~G 398 (467)
T COG2211 383 LA-LAGFIPGWILGAIG 398 (467)
T ss_pred HH-HHHHHHHHHHHHcC
Confidence 96 77889999988776
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.9e-07 Score=85.60 Aligned_cols=159 Identities=9% Similarity=0.032 Sum_probs=94.3
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.+..++|+.++.+....++.............++.+...-+....+.+.+...+++++|.+++++++||++ +|.
T Consensus 221 l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~g------kk~ 294 (460)
T PRK11462 221 LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKC------KVT 294 (460)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------hHH
Confidence 46677888877766555555444444444444444433222334455667778889999999999999994 334
Q ss_pred HHHHHHHHHHH-HHHHHHhcC--chhHHHHHHHHHhhhhcccccHHHHHHHhhC-------CcchHHHHHHHHHHhhhHH
Q 018271 217 FIAITLATMSV-GHIVVASGF--PGNLYVGSIIVGVCYGCQWSLMPTITYEIFG-------VGHMGTIFNTIAIASPVGS 286 (358)
Q Consensus 217 ~~~~~~~~~~~-~~~l~~~~~--~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-------~~~~g~~~g~~~~~~~ig~ 286 (358)
.+..+..+.++ ..+.+..+. ...+++..++.|++.+...++.+++++|... .+.-|..++.......+|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~ 374 (460)
T PRK11462 295 IFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGL 374 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHH
Confidence 33322222222 222222222 2233444556677666656666667666543 3344666677778888888
Q ss_pred HHHhHHHHHHHHhhcc
Q 018271 287 YVCSVRIIGYIYDNVA 302 (358)
Q Consensus 287 ~i~gp~i~g~l~~~~g 302 (358)
. +++.+.|.+++..|
T Consensus 375 a-lg~~i~g~iL~~~G 389 (460)
T PRK11462 375 A-FGGALIGWMLAYGG 389 (460)
T ss_pred H-HHHHHHHHHHHHcC
Confidence 5 78888998887654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.1e-08 Score=89.65 Aligned_cols=165 Identities=11% Similarity=0.017 Sum_probs=127.5
Q ss_pred hHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH----hcCc
Q 018271 162 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA----SGFP 237 (358)
Q Consensus 162 ~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~----~~~~ 237 (358)
.....+|.+.+.++.+..+++++-..+..+..++.+..|++.+|+ +.|.-++.++.++++++.++. ..++
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~------gyk~gi~lgL~l~avg~~lF~pAa~~~~y 104 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL------GYKAGIVLGLLLYAVGAALFWPAASSKSY 104 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh------hhHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 344567888888899999999999999999999999999999999 556668889999999988875 2344
Q ss_pred hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC----CCC---Cccc
Q 018271 238 GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS----GEG---NSCN 310 (358)
Q Consensus 238 ~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~----~~~---~~~~ 310 (358)
..+++..++.|.|.+...+..+++++.+.+++.-..-+++....+.+|+. .+|++++.+..+... +.. ..-.
T Consensus 105 ~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~-~gp~~g~~lils~~~~~~~~~~~~~~~~~ 183 (422)
T COG0738 105 GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAI-LGPLLGSSLILSGVALTMSAAQILAIKGA 183 (422)
T ss_pred HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHH-HHHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 56777788999999999999999999999998888899999999999995 899999998874110 000 0000
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 018271 311 GTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 311 g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
-..-++..|..++...++.++..
T Consensus 184 ~~~~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 184 DASSVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Confidence 00016777777777666655443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.8e-08 Score=88.09 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=123.4
Q ss_pred hHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcCchhHH
Q 018271 162 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLY 241 (358)
Q Consensus 162 ~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~~~~~l~ 241 (358)
..-..++.+-+++|.|.+.+++++++..++.....++..+++.|+ +....+..++++.+++..+=...+...++
T Consensus 30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~------g~er~l~~~Llli~~G~~iR~~~~~~~L~ 103 (395)
T COG2807 30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF------GEERSLFLALLLIAAGILIRSLGGLPLLF 103 (395)
T ss_pred hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------hhHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 344456677778999999999999999999999999999999999 45555666777666666654434556678
Q ss_pred HHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHH
Q 018271 242 VGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLI 321 (358)
Q Consensus 242 ~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~ 321 (358)
....+.|.+.+..+.+.|..+.+.|| ++.+..+|++.+...+|+. +++.+.--+.++.++ |+....+
T Consensus 104 ~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aa-Laa~lavpla~~~~g-----------W~~aL~~ 170 (395)
T COG2807 104 LGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAA-LAAALAVPLAQHSGG-----------WRGALGF 170 (395)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHH-HHhhhhhHHHHhhcc-----------HHHHHHH
Confidence 88899999999999999999999999 6668999999888888775 677677777776644 9999999
Q ss_pred HHHHHHHHHHHH
Q 018271 322 MASVAFVGCLVA 333 (358)
Q Consensus 322 ~~~~~~~~~~~~ 333 (358)
.+..+++++++.
T Consensus 171 WAl~allAl~~W 182 (395)
T COG2807 171 WALLALLALLIW 182 (395)
T ss_pred HHHHHHHHHHHH
Confidence 999988887553
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-08 Score=96.13 Aligned_cols=169 Identities=11% Similarity=0.083 Sum_probs=107.7
Q ss_pred hhHHhcHHHHH-HhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCc-
Q 018271 161 LATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFP- 237 (358)
Q Consensus 161 ~~~~~~l~~~~-~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~- 237 (358)
..+..+++++. +.+|++...++.+.++..+...+..|+.|+++||...|.+ +||+.+..+.+..++..+++. .++.
T Consensus 26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G-rrrp~il~~~~~~~i~~~l~f~~p~~~ 104 (444)
T PRK09669 26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG-QFRPYLLWFAIPFGVVCLLTFYTPDFG 104 (444)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC-CcchhHHHHHHHHHHHHHHHHhCCCCC
Confidence 33445555554 4679999999999999999999999999999999766553 345666666555555554433 3221
Q ss_pred -----hhHHHHHHHHHhhhhcccccHHHHHHHhh-CCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCcccc
Q 018271 238 -----GNLYVGSIIVGVCYGCQWSLMPTITYEIF-GVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG 311 (358)
Q Consensus 238 -----~~l~~~~~l~g~~~g~~~~~~~~~~~e~f-~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g 311 (358)
..+++..++.+.++........++.+|+. ++++|.+..++...+..+|+. +++.+...+....+... .
T Consensus 105 ~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~-i~~~~~~pl~~~~~~~~-----~ 178 (444)
T PRK09669 105 ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGL-IVSVIALPLVDILGKGD-----E 178 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc-----h
Confidence 12233344555556556666778888988 456788888887777777663 45544444443332100 1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 312 THCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 312 ~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
..+|+..+.+.++++++..+++++.
T Consensus 179 ~~g~~~~~~i~~ii~~v~~~~~~~~ 203 (444)
T PRK09669 179 QKGYFYAMMVMGLLGVVLFFCCFFM 203 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 1237878877777776666554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-06 Score=83.42 Aligned_cols=180 Identities=11% Similarity=0.012 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCc----hhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH--
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPT----SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF-- 217 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~----~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~-- 217 (358)
.+..+++...+....+.-..+.++.+.++ .+.+. ...+++.++..+.-++..++..++-.+..+|+. +.+..
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~-~~~~~~k 351 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK-DPTTPLK 351 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC-CCCcHHH
Confidence 34444444444444444445556666554 23221 125677777777777777776665556655421 11222
Q ss_pred HHHHHHHHHHHHHHHH----------hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHH
Q 018271 218 IAITLATMSVGHIVVA----------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY 287 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~----------~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~ 287 (358)
+.++.++.++++..+. ..+.+++++..++.+++.....+...+++.+..|++.||+.+|+......+|..
T Consensus 352 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~ 431 (475)
T TIGR00924 352 FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSL 431 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666555443 135566788889999999999999999999999999999999999999999995
Q ss_pred HHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 288 VCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 288 i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
+++.+.....+..+ |...|...++.+++..++.+++.+
T Consensus 432 -l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 432 -LGGYLATFGAVPQG------------VTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred -HHHHHHHHHhcccc------------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666555 778887777777776655544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.5e-08 Score=93.19 Aligned_cols=156 Identities=12% Similarity=0.038 Sum_probs=94.1
Q ss_pred HHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHH
Q 018271 152 AMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHI 230 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~ 230 (358)
.+++.....-.+...++.+++ +.|++..+.+++.+...++..++++++|+++||++ +||+.+.++.++..+...
T Consensus 10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g-----~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWL-----SAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHH
Confidence 334443333444455555554 57999999999999999999999999999999985 335566666666655555
Q ss_pred HHH-hcCchhHHHHHHHHHhhhhcccccHHHHH----H----HhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc
Q 018271 231 VVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTIT----Y----EIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 301 (358)
Q Consensus 231 l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~----~----e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~ 301 (358)
+.. .++.+.+++.+++.|++.+...+...+.. . |......|.+.+| .+|. .++|.++|.+ +..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~-~ig~~l~g~l-~~~ 156 (418)
T TIGR00889 85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGF-IAAMWAVSLL-DIE 156 (418)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHH-HHHHHHHHHh-ccc
Confidence 544 44556666666777776655544433332 1 1111122333333 3455 4677778876 222
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 302 ASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 302 g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
. .+..|++.+++.++..+.
T Consensus 157 ~------------~~~~f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 157 L------------SNIQLYITAGSSALLGVF 175 (418)
T ss_pred c------------hhHHHHHHHHHHHHHHHH
Confidence 1 123466666655555543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.5e-08 Score=93.56 Aligned_cols=177 Identities=15% Similarity=0.032 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
...++...++..... ......++.+++ ++|++.++.+.+.++..+...+- +++|.++||++... ..||+.+.++.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G-~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFG-YTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCC-ccchHHHHHHHH
Confidence 334445456555555 555555666666 67999999999999999998884 55999999995322 146666666655
Q ss_pred HHH-HHHHHHHh-cCchh-HHHHHHHHHhhhhcccccHHHHHHHhhCCcchHH---HHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 224 TMS-VGHIVVAS-GFPGN-LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGT---IFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 224 ~~~-~~~~l~~~-~~~~~-l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~---~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
+.. +....+.. ++... ..+..++.+++.+......-++..|..+ ++++. ..++......+|. ++|+.++|.+
T Consensus 104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~-~vg~~l~G~l 181 (468)
T TIGR00788 104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGG-LISSLLGGPL 181 (468)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHH-HHHHHHHHHH
Confidence 542 33232332 22222 2335667778877777778889999888 54433 3333333344677 5788999999
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
.+..+ |+..|++.+.+.++..+.. .+.+|
T Consensus 182 ~~~~~------------~~~~f~~~a~l~ll~~~~~-~~~~E 210 (468)
T TIGR00788 182 LDKTL------------TRILFLITAALLLLQLFVS-NLSKE 210 (468)
T ss_pred HHhcC------------cchHHHHHHHHHHHHHHHH-Hhccc
Confidence 99887 9999999988887774433 33344
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-07 Score=89.32 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHhhhhccccc
Q 018271 182 NSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQWSL 257 (358)
Q Consensus 182 ~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~----~~~~~~l~~~~~l~g~~~g~~~~~ 257 (358)
+..++.+.+++++|.++.|+++||+ |||..+.+..++..++.++.. .+....+.+.+++.|+..|...+.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~------GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF------GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL 136 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH
Confidence 4567889999999999999999999 666666666655555444432 456678889999999999999999
Q ss_pred HHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHH-HHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 258 MPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG-YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 258 ~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g-~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
.+.++.|..|.+.||..-.+..++..+|.. ++..++- .+..... .|.+.+.+..+.+++..+..
T Consensus 137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l-l~~~~~l~~ilGt~~-----------~W~~l~~~~~i~~~~~l~~l 201 (485)
T KOG0569|consen 137 VPMYLTEISPKNLRGALGTLLQIGVVIGIL-LGQVLGLPSLLGTED-----------LWPYLLAFPLIPALLQLALL 201 (485)
T ss_pred HHHHHhhcChhhhccHHHHHHHHHHHHHHH-HHHHHccHHhcCCCc-----------chHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888884 5543322 2332222 28888877777766666544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-08 Score=92.40 Aligned_cols=172 Identities=15% Similarity=0.179 Sum_probs=98.0
Q ss_pred hhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHH
Q 018271 141 VCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIA 219 (358)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~ 219 (358)
.|++.+|.+...+++..+..-.+.+..|..+++ .|+|.++.|.+.+...+...+.+++.|.++||.+.|| +.+..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK----~Ll~~ 79 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKK----HLLWF 79 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCS----HHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhH----HHHHH
Confidence 467788888888877777766777778888875 7999999999999999999999999999999997543 12222
Q ss_pred HHHHHHH-HHHHHHHh-cC-chhHHHHHHH----HHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 220 ITLATMS-VGHIVVAS-GF-PGNLYVGSII----VGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 220 ~~~~~~~-~~~~l~~~-~~-~~~l~~~~~l----~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
+..+... ...+.... +- ....+++.++ ++++..+..++.=+++.+. . ++.+--+|-.-+.+.+|-+ .+..
T Consensus 80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~-s-r~~~feYG~~R~wGSig~a-i~s~ 156 (412)
T PF01306_consen 80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV-S-RRNGFEYGRARMWGSIGFA-IASL 156 (412)
T ss_dssp HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH-H-HHHSS-HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH-H-HHhcCCcchHHHHhhHHHH-HHHH
Confidence 2222211 11111111 10 0112223333 3333333333333333222 1 2234445555566666663 5667
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
++|.+++.. -...||+..+..++..++
T Consensus 157 ~~G~L~~i~-------------p~~~fwi~s~~~~il~ll 183 (412)
T PF01306_consen 157 LAGILFNIN-------------PNIIFWIASAAAIILLLL 183 (412)
T ss_dssp HHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
T ss_pred HhheeeeeC-------------ccHHHHHHHHHHHHHHHH
Confidence 889888753 456777655544444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-07 Score=90.61 Aligned_cols=159 Identities=11% Similarity=-0.004 Sum_probs=111.6
Q ss_pred cHHHhhhchhHHHHHHHHHH-hh-hhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 136 NILQSVCTLNFWLLFVAMLC-GM-GSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
..++.++++.+|...+..++ .. ........++ ...+.+|+++...+......+++.++|..+.+++.+|+ +
T Consensus 244 ~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~------~ 316 (468)
T TIGR00788 244 GLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF------P 316 (468)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC------C
Confidence 34556777887764443333 11 1111100111 11235799999999999999999999998888887777 6
Q ss_pred hHHHHHHHHHHHHHHHHHHH--h---------cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHh
Q 018271 214 RPSFIAITLATMSVGHIVVA--S---------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIAS 282 (358)
Q Consensus 214 r~~~~~~~~~~~~~~~~l~~--~---------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~ 282 (358)
.+.++.++.++.+++.+... . .+........++.+++.+..+.....++.+..|++..|+.+++.+...
T Consensus 317 ~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~ 396 (468)
T TIGR00788 317 YRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASIL 396 (468)
T ss_pred HHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHH
Confidence 66777777777666553321 0 122233445567788888778888899999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHhhcc
Q 018271 283 PVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 283 ~ig~~i~gp~i~g~l~~~~g 302 (358)
++|.. +++.++|.+.+..|
T Consensus 397 ~lg~~-v~~~~gg~l~~~~g 415 (468)
T TIGR00788 397 HLGSS-VSGFLGVLLMETIG 415 (468)
T ss_pred HHHHH-HHHHHHHHHHHHcC
Confidence 99995 88999999999887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.1e-06 Score=75.52 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=127.1
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHH-HhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
.+++...+++...++...++...+++.-...+-+|. +.+|++..+.+.+......+..+|-.+.|++..|-. ++
T Consensus 200 a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~-----~~ 274 (403)
T PF03209_consen 200 AWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRL-----GK 274 (403)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----Cc
Confidence 345555666666555555555555555555555554 456999999999999999999999999999877432 22
Q ss_pred HHHHHHHHHHHHHHHH--HHH--hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHh
Q 018271 215 PSFIAITLATMSVGHI--VVA--SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 290 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~--l~~--~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~g 290 (358)
+.....+.....+++. .++ ..+.+.+....+++|++.|......-..+-++..+++-|+.+|....++.++.. ++
T Consensus 275 ~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~G-lg 353 (403)
T PF03209_consen 275 KRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARG-LG 353 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHH-HH
Confidence 2223333333333332 222 345667788889999999877666666777888889999999999999999885 78
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
..++|.+.|....-.+. ....+|..+|.+-+++.++++.+
T Consensus 354 ~~~GG~~~D~~~~~~~~--~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 354 TFLGGALRDLVRALFGN--SPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHHHHhccC--CcchHHHHHHHHHHHHHHHHHHH
Confidence 88888888754210000 12224888888777776666543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-07 Score=89.89 Aligned_cols=169 Identities=9% Similarity=0.042 Sum_probs=114.0
Q ss_pred hhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcC-
Q 018271 160 GLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF- 236 (358)
Q Consensus 160 ~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~- 236 (358)
...+..++.++.. ..|+++..++.+..+.-+...+.-|+.|+++||...|.+ +||+.+.++.+..++..+++. .+.
T Consensus 25 ~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G-r~rp~il~g~i~~~i~~~llf~~p~~ 103 (460)
T PRK11462 25 FDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG-KFRPWVLFGALPFGIVCVLAYSTPDL 103 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC-CcchhHhHHHHHHHHHHHHHHhCCCC
Confidence 3344455665555 559999999999999999999999999999999766554 456666667666676666554 321
Q ss_pred -ch----hHHHHHHHHHhhhhcccccHHHHHHHhhC-CcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccc
Q 018271 237 -PG----NLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCN 310 (358)
Q Consensus 237 -~~----~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~ 310 (358)
.. .+.+..++..+++........++.+|+.+ +++|.+..++-..++.+|.. +++.+...+.+..|+.+
T Consensus 104 s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~-~~~~~~~plv~~~g~~~----- 177 (460)
T PRK11462 104 SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM-LSTVLMMPLVNLIGGDN----- 177 (460)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc-----
Confidence 11 23334455667777777777888889887 57899999999888888874 56666555555443210
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Q 018271 311 GTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 311 g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
...+|.....+.+++.+++..+++.
T Consensus 178 ~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 178 KPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0123777666666666555544433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.9e-08 Score=88.87 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=136.9
Q ss_pred ccccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 133 EDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
...+.++.+++++|.++.+++....+.+++..+.+-..+...|++...+|+...+..+++++|..++|.+.||..
T Consensus 255 f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk----- 329 (480)
T KOG2563|consen 255 FPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTK----- 329 (480)
T ss_pred HHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhh-----
Confidence 445788999999999999998888877777777776666667998889999999999999999999999999973
Q ss_pred chHHHHHHHHHHHHHH-HHHHHh----cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHH
Q 018271 213 ERPSFIAITLATMSVG-HIVVAS----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY 287 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~-~~l~~~----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~ 287 (358)
.-|..+.+.+....++ +.+... .....++....++|++..+..++..-+-.|..-|..-++..|+.++.+.+-+.
T Consensus 330 ~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~ 409 (480)
T KOG2563|consen 330 KFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGV 409 (480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHH
Confidence 2334444444444444 222221 22344666778888888888887777777777667778999999887777664
Q ss_pred HHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018271 288 VCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYK 345 (358)
Q Consensus 288 i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (358)
+ =.++-+...+..+.+ ..+...-+.+...+++++++.+++++..+|.+.
T Consensus 410 ~-~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~ 458 (480)
T KOG2563|consen 410 I-LVFIMGILAEDLGPP--------GNTFPANIFLTVSALLGAILVAFFRPDYRRLRA 458 (480)
T ss_pred H-HHHHHHHHhhccCCC--------CCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence 3 366677766655421 112233344455555566565666555554433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=87.88 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=82.5
Q ss_pred CCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHh----cCc----hhHHHHHHHH
Q 018271 176 YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS----GFP----GNLYVGSIIV 247 (358)
Q Consensus 176 ~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~----~~~----~~l~~~~~l~ 247 (358)
+++...+.+-....++.++|+++.||+.||+ |||.++...+++++++.++.+. +++ .++...++++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~------GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~L 154 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF------GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLL 154 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh------cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHh
Confidence 5666677888889999999999999999999 5556666666777776665441 222 3456778999
Q ss_pred HhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHH
Q 018271 248 GVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 286 (358)
Q Consensus 248 g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~ 286 (358)
|+|.|+-+++..++++|..-.+.||+-.+.+...+..|.
T Consensus 155 GiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 155 GIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 999999999999999999999999998888755555544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.6e-07 Score=91.54 Aligned_cols=164 Identities=19% Similarity=0.212 Sum_probs=124.7
Q ss_pred hhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcC--
Q 018271 160 GLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGF-- 236 (358)
Q Consensus 160 ~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~~-- 236 (358)
+|++...+..|+. .+|++.+.+..+...+....-+.++++|+++|++- ||++.+.++.++..+++.++....
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~l-----G~~~tIl~~~ii~~lG~~llai~a~~ 77 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWL-----GKFKTILYLSIVYVVGHALLSFGAIP 77 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4555556655544 57999988888888888888888999999999984 888888888888888887765211
Q ss_pred ----c---hhHHHHHHHHHhhhhcccccHHHHHHHhhCCc---chHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCC
Q 018271 237 ----P---GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVG---HMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG 306 (358)
Q Consensus 237 ----~---~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~---~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~ 306 (358)
. ...+++..+.+.|.|++-+...+...|.|.++ .+-..+.+...+.++|++ +++++.+++.+..+
T Consensus 78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~~~---- 152 (654)
T TIGR00926 78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGDVG---- 152 (654)
T ss_pred ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc----
Confidence 1 12455667778888999899999999999754 367888888999999995 78889998876543
Q ss_pred Ccccc-ccchHHHHHHHHHHHHHHHHHHHH
Q 018271 307 NSCNG-THCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 307 ~~~~g-~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
|.| ..||...|.+.+++++++.++...
T Consensus 153 --~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 153 --CFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred --ccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 333 235999999999988888766443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-06 Score=83.91 Aligned_cols=155 Identities=13% Similarity=-0.015 Sum_probs=103.6
Q ss_pred HHhhhc-hhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCc---hhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 138 LQSVCT-LNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPT---SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 138 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~---~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
.+++|+ +.++...+..++....++......|+.... ++-+. ...++.....+++..+|.++.|.+.-+++
T Consensus 303 ~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir----- 377 (599)
T PF06609_consen 303 HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIR----- 377 (599)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHcc-----
Confidence 456776 556666666666666667776777766553 34443 25677778888899999999999987763
Q ss_pred chHHHHHHHHHHHHHHHHHHH---hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 213 ERPSFIAITLATMSVGHIVVA---SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
+-|+.++++.+++.+++-+++ ..+....+...++.|++.|....+......-..|.+..|++.|+......+|+. +
T Consensus 378 ~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGs-I 456 (599)
T PF06609_consen 378 HIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGS-I 456 (599)
T ss_pred chhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhH-H
Confidence 335666666666665544444 234445566777888888877666666666667888999999999777777664 4
Q ss_pred hHHHHHHHH
Q 018271 290 SVRIIGYIY 298 (358)
Q Consensus 290 gp~i~g~l~ 298 (358)
|.-+...++
T Consensus 457 g~aIy~~I~ 465 (599)
T PF06609_consen 457 GYAIYNAIF 465 (599)
T ss_pred HHHHHHHHH
Confidence 444444333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-07 Score=83.80 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=110.6
Q ss_pred hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhh
Q 018271 173 SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCY 251 (358)
Q Consensus 173 ~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~ 251 (358)
.-|.+..+..+++.....+..+|...+|.++|++ |||+.....+...++..++-. .++...+.+...+.|++.
T Consensus 107 ~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~------grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~ 180 (528)
T KOG0253|consen 107 VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI------GRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGV 180 (528)
T ss_pred hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh------hcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccC
Confidence 3388888889999999999999999999999999 566667777777777666655 567778888999999999
Q ss_pred hcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHH
Q 018271 252 GCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCL 331 (358)
Q Consensus 252 g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~ 331 (358)
|+ .+...++-.|..|..+|+.-.-+. ....+|. ++...+.=....+.| ||+-+........+.+.
T Consensus 181 gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~-v~ea~law~vm~~~g------------wr~~l~~~~~pl~~~a~ 245 (528)
T KOG0253|consen 181 GG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQ-VFEALLAWGVMSNFG------------WRYLLFTSSTPLMFAAR 245 (528)
T ss_pred CC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHH-HHHHHHHHHHHHhhh------------HHHHHHHHHhHHHHHHH
Confidence 98 777788888999988888776655 7777787 465555545556666 99988887766666665
Q ss_pred HHHHH
Q 018271 332 VAFLL 336 (358)
Q Consensus 332 ~~~~~ 336 (358)
.+.++
T Consensus 246 f~~w~ 250 (528)
T KOG0253|consen 246 FLVWV 250 (528)
T ss_pred HHhhc
Confidence 55444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-07 Score=89.55 Aligned_cols=175 Identities=11% Similarity=0.086 Sum_probs=109.6
Q ss_pred HHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHH
Q 018271 154 LCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV 232 (358)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~ 232 (358)
+........+..+++.|.++ .|++...++.+..+.-+...+..|+.|+++||...|.+ .||+.+..+.+..+++.+++
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~G-rrrp~il~g~i~~~i~~~ll 94 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWG-KFKPWILIGTLANSVVLFLL 94 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCC-CcchhHhhhhHHHHHHHHHH
Confidence 33334444455666666665 59999999999999999999999999999997644432 34666666767666665554
Q ss_pred H-hc--Cch----hHHHHHHHHHhhhhcccccHHHHHHHhh-CCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCC
Q 018271 233 A-SG--FPG----NLYVGSIIVGVCYGCQWSLMPTITYEIF-GVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 304 (358)
Q Consensus 233 ~-~~--~~~----~l~~~~~l~g~~~g~~~~~~~~~~~e~f-~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~ 304 (358)
. .+ +.. .+.+..++.++++........++.+|+. .+++|.+..++-..+..+|+. +.+.+...+.+..|..
T Consensus 95 f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~-~~~~~~~~~~~~~g~~ 173 (473)
T PRK10429 95 FSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGF-VTAGFTLPFVNYVGGG 173 (473)
T ss_pred HcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC
Confidence 4 22 111 1233344556666666677788889988 478899988887666666654 3344444333332210
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 018271 305 EGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 335 (358)
Q Consensus 305 ~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~ 335 (358)
. ...+|+....+.+++.+++.+++++
T Consensus 174 ~-----~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 174 D-----RGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred c-----hhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 0 0112666666666666655544443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-07 Score=87.95 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=75.6
Q ss_pred hhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchh
Q 018271 161 LATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGN 239 (358)
Q Consensus 161 ~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~ 239 (358)
-.+...+|.++++.|+|..+.+.+.++..+..+++++++|+++||.. .++..+.+..++.++...... ..+.+.
T Consensus 19 G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~-----~~~~~l~~~~l~~~~~~~~~~~~~~f~~ 93 (400)
T PF03825_consen 19 GAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFG-----SAKRILALLSLLSALALLLLAFSSSFWW 93 (400)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----hHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34556788999999999999999999999999999999999999985 344455555555555444444 455666
Q ss_pred HHHHHHHHHhhhhcccccHHHHHHHhhC
Q 018271 240 LYVGSIIVGVCYGCQWSLMPTITYEIFG 267 (358)
Q Consensus 240 l~~~~~l~g~~~g~~~~~~~~~~~e~f~ 267 (358)
+++..++..++.....++.-++.-+.-.
T Consensus 94 ~~~~~~l~~~~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 94 LFVIMLLFSFFFSPTMPLSDSIALSYLG 121 (400)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666677777777777777777666554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-08 Score=95.27 Aligned_cols=172 Identities=17% Similarity=0.175 Sum_probs=122.5
Q ss_pred hhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhc-C--
Q 018271 161 LATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG-F-- 236 (358)
Q Consensus 161 ~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~-~-- 236 (358)
..+..++.++.. ..|.++...+.+..+..+.+.+--|+.|.++||...|.+ +||+.+.++.++.+++.+++... .
T Consensus 18 ~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~llf~~~p~~ 96 (428)
T PF13347_consen 18 SLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLLFSPPPAG 96 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHhhccccch
Confidence 334445555544 559999999999999999999999999999996544433 45566777777777777766522 1
Q ss_pred --c----hhHHHHHHHHHhhhhcccccHHHHHHHhhC-CcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCcc
Q 018271 237 --P----GNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSC 309 (358)
Q Consensus 237 --~----~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~ 309 (358)
. ..+.+..+++.+++........++.+|+.+ +++|....++-..+..+|+. +...+.+.+.+..++++
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~-l~~~~~~~l~~~~g~~~---- 171 (428)
T PF13347_consen 97 LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSL-LASFLAPILVSWFGGGD---- 171 (428)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHH-HHHHHhhhhhhhhccCc----
Confidence 1 123445556677777777788889999997 46899999998888888884 55667777776655311
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 310 NGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 310 ~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
...+|++..++.+++.+++.++..+..+|
T Consensus 172 -~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 172 -TSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred -cchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 00148999888888888877776666555
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.5e-08 Score=92.20 Aligned_cols=179 Identities=13% Similarity=0.074 Sum_probs=132.5
Q ss_pred HhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 139 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
+++.+++..++++..++.......+.+.+--.+++.|-.+...|......-.+-++.-++.+++..|+ |+..++
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki------GHv~v~ 439 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI------GHVNVM 439 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh------ccccee
Confidence 34445544444444444333334455566667788876666666666666677788889999999999 555667
Q ss_pred HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHH-HHHhhhHHHHHhHHHHHH
Q 018271 219 AITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCSVRIIGY 296 (358)
Q Consensus 219 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~-~~~~~ig~~i~gp~i~g~ 296 (358)
..++....+=++.+. ..++|..+..=++.|+..+.+|....+|++..-|++.++++.|+. ...-++|-. +|.+|+|.
T Consensus 440 ~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g-~GslIGG~ 518 (618)
T KOG3762|consen 440 YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKG-LGSLIGGF 518 (618)
T ss_pred eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcc-hhhhhhhh
Confidence 777777776666666 688888888889999999999999999999999999999999998 445566664 67788999
Q ss_pred HHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 297 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 297 l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
+.++.| -+..|.+.++.+++.++....+
T Consensus 519 ~v~~fg------------~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 519 VVERFG------------ARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred hheeeh------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 999988 6888988888777766554443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-06 Score=86.68 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=64.4
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHH-HHHHhhhHhHHHHHHHhh
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIVLH 208 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i-~~~~g~~~~G~lsDr~~~ 208 (358)
..+++++++.+|...+..++.....+++.+++|.+++ .+|++..++++++.+..+ +.++|.+++|+++||++.
T Consensus 322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~ 396 (633)
T TIGR00805 322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKL 396 (633)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecc
Confidence 4678899999999999999998899999999999998 469999999999887776 678999999999999853
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=85.37 Aligned_cols=184 Identities=15% Similarity=0.054 Sum_probs=127.0
Q ss_pred ccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 135 MNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
.+.+++++++..|...................++.++.+ ...+.-+.++.....++...+|..+.|.++||++. .
T Consensus 261 ~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~----~ 336 (464)
T KOG3764|consen 261 TPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPH----L 336 (464)
T ss_pred ccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCc----h
Confidence 357889999999887766655555555566677776554 45333367777888889999999999999999942 2
Q ss_pred hHHHH-HHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCC---c---chHHHHHHHHHHhhhH
Q 018271 214 RPSFI-AITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV---G---HMGTIFNTIAIASPVG 285 (358)
Q Consensus 214 r~~~~-~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~---~---~~g~~~g~~~~~~~ig 285 (358)
| |.+ ..+.+...+...... .++...+++..+..+++.+...+.......++... + .+|..+++...+..+|
T Consensus 337 ~-wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla 415 (464)
T KOG3764|consen 337 R-WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLA 415 (464)
T ss_pred h-HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHh
Confidence 4 333 233333333222222 34455566666666666665555544444444332 2 6789999999999999
Q ss_pred HHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 286 SYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 286 ~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
.+ +||.++|.+.+..| |.|...+.+...++-+-+...+
T Consensus 416 ~a-~GP~~gg~iv~~iG------------F~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 416 YA-IGPTFGGSLVEAIG------------FEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred hh-ccccccchheeehh------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 95 89999999999998 9999998888888777554444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.1e-07 Score=85.59 Aligned_cols=189 Identities=9% Similarity=0.017 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHh--cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGES--LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
..|+..+..++.......+....-.|+++ .+-+.+..|+.++...++..++.++.|+-+.|.++ -|+.++++.
T Consensus 35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~-----~k~Pli~s~ 109 (488)
T KOG2325|consen 35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGS-----VKKPLIVSF 109 (488)
T ss_pred hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCC-----cccCHHHHH
Confidence 34555555665555444444444456665 68888889999999999999999999998888642 145577788
Q ss_pred HHHHHHHHHHH----hc--CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHH
Q 018271 223 ATMSVGHIVVA----SG--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 296 (358)
Q Consensus 223 ~~~~~~~~l~~----~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~ 296 (358)
++++++.+++. .+ ..+.+++++++.|++.+. .+..-.|+++..-.+.|.++++..+.+..+|. ++||.+...
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~-ilGp~~q~~ 187 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGI-ILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHH-HHhHHHHHH
Confidence 88888887762 12 234577889999988764 46778899998888899999988887777777 477755443
Q ss_pred HHhhccCCCCCcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018271 297 IYDNVASGEGNSC--NGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 341 (358)
Q Consensus 297 l~~~~g~~~~~~~--~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 341 (358)
+ ...+.++-.+- .--+.|..+-|+++++.++.++...+..+|..
T Consensus 188 f-~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 188 F-TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred H-hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 3 22332211000 12223778888889888888877766665543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-06 Score=81.03 Aligned_cols=182 Identities=13% Similarity=0.064 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHH-h-cCCCch------h----hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcC
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGE-S-LGYPTS------A----INSLVSLWSIWNFLGRFGGGYVSDIVLHRMG 211 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~G~s~~------~----a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~ 211 (358)
+.+|.+++..++.+.+.+.+..+...++. + ++-++. + ..+...+.++.+.+..++.-++.+|+|
T Consensus 258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g---- 333 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWG---- 333 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 67888999999888888777776666554 2 232211 1 123334444554555555555555553
Q ss_pred CchHHHHHHHHHHHHHHHHHHH-hcC---------------------chhHHHHHHHHHhhhhcccccHHHHHHHhhCC-
Q 018271 212 WERPSFIAITLATMSVGHIVVA-SGF---------------------PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV- 268 (358)
Q Consensus 212 ~gr~~~~~~~~~~~~~~~~l~~-~~~---------------------~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~- 268 (358)
+||....++.++.++++.... ..+ ....++...+.|+..+..+++-++++++.-++
T Consensus 334 -~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 334 -AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 245665666666665554432 111 14466777889999999999999999999885
Q ss_pred -cchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018271 269 -GHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 341 (358)
Q Consensus 269 -~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 341 (358)
++.|..+|+.|.+..+... +..+..|.+.+..|+. -..++.+.++.++++++.++++.++.+
T Consensus 413 ~~~~G~~mgilN~~I~lpQi-i~sl~~g~~~~~~g~~----------~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 413 GAGQGLSMGVLNLAIVIPQI-IVSLGSGPWDQLFGGG----------NLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred CCCCcchhhHHHHHHHHHHH-HHHHHHHHHHHHcCCC----------CeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4569999999999999995 5666777766666641 456788888888888887776665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=77.38 Aligned_cols=128 Identities=15% Similarity=0.055 Sum_probs=91.5
Q ss_pred hhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH--
Q 018271 156 GMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-- 233 (358)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-- 233 (358)
..+..|.+..+-|++-+.+|+|.++...+.+...++..+| ++.|.+.|++ +.+..+.++.+...++...+.
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~------gp~~~l~iG~~~~~~GY~~~~l~ 86 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF------GPWVVLLIGAVLGFVGYGLLWLA 86 (250)
T ss_pred hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888889999999999999999999999998875 7889999999 666777777777777776543
Q ss_pred hcC------chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH
Q 018271 234 SGF------PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 234 ~~~------~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
... .+.+.+..++.|.+.+...........+.|| ++||++.|+.-...++++.++..
T Consensus 87 ~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 87 VSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred HhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH
Confidence 111 1223333344444433333444444557887 68999999998888888876654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-06 Score=75.76 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=110.7
Q ss_pred hhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcCc
Q 018271 158 GSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFP 237 (358)
Q Consensus 158 ~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~~~ 237 (358)
.+.+.-..++-.+.+++|++..+.+.+.......+.+..++.|.++||+ |||...++..++..+.++.-..++.
T Consensus 48 ~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~------Grk~~cl~~cily~~scl~k~~~~~ 121 (354)
T PF05631_consen 48 AADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY------GRKKACLLFCILYSLSCLTKHSSNY 121 (354)
T ss_pred HHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHhcccc
Confidence 3333333344455678899999999998888888888888899999999 5666666666666666665556778
Q ss_pred hhHHHHHHHHHhhhhcccccHHHH-HHHh----hCCcchHHHHHHHH-HHhhhHHHHHhHHHHHHHHhhccCCCCCcccc
Q 018271 238 GNLYVGSIIVGVCYGCQWSLMPTI-TYEI----FGVGHMGTIFNTIA-IASPVGSYVCSVRIIGYIYDNVASGEGNSCNG 311 (358)
Q Consensus 238 ~~l~~~~~l~g~~~g~~~~~~~~~-~~e~----f~~~~~g~~~g~~~-~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g 311 (358)
..+++.+++.|++....++..-+. +.|. ||.+..+..++.+. ..+.+-+ +.+.+++-++.+..+.
T Consensus 122 ~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vA-I~aGv~a~~l~~~~~~-------- 192 (354)
T PF05631_consen 122 PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVA-IGAGVVANVLADWFGF-------- 192 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHH-HHHhHHHHHHHHHhCC--------
Confidence 889999999999888776665443 4444 44444555555554 3444444 4555666666666551
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 312 THCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 312 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
+...+|.....+.+++.++......|
T Consensus 193 --g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 193 --GPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred --CCcchHHHHHHHHHHHHHHHHhcccc
Confidence 03678888777777777654433333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-05 Score=73.79 Aligned_cols=173 Identities=10% Similarity=0.011 Sum_probs=104.9
Q ss_pred hhHHhcHHHHHHh-c-----CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcC-CchHHHHHHHHHHHHHHHHH--
Q 018271 161 LATVNNISQIGES-L-----GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMG-WERPSFIAITLATMSVGHIV-- 231 (358)
Q Consensus 161 ~~~~~~l~~~~~~-~-----G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~-~gr~~~~~~~~~~~~~~~~l-- 231 (358)
....+.++.+.++ . |+.. ...++.++..+..++..++.+++.||.++|+. .....-+.+++++.+++++.
T Consensus 286 ~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~ 364 (489)
T PRK10207 286 AQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAA 364 (489)
T ss_pred HHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3344566666653 2 2221 23445555666677788888999999976641 11112234444444444421
Q ss_pred -----HH-h---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhcc
Q 018271 232 -----VA-S---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 232 -----~~-~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g 302 (358)
.. . .+.+++....++.|++.+...+....++.+..|++.+|.++|+.++...+|+. +|..+++.......
T Consensus 365 ~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~-lg~~l~~~~~~~~~ 443 (489)
T PRK10207 365 AAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL-LGGYVATFTAVPDN 443 (489)
T ss_pred HHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccc
Confidence 11 1 12344566778899999999888899999999999999999999999999885 66555554421000
Q ss_pred CCCCCccc-cccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 303 SGEGNSCN-GTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 303 ~~~~~~~~-g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
. .+-. ....|.+.|...++.++++.++.+++.+
T Consensus 444 ~---~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 444 I---TDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred c---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0111677788888777776665544443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.5e-10 Score=106.51 Aligned_cols=138 Identities=20% Similarity=0.257 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hc---CchhHHHHHHHHHhhhhccc
Q 018271 180 AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SG---FPGNLYVGSIIVGVCYGCQW 255 (358)
Q Consensus 180 ~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~---~~~~l~~~~~l~g~~~g~~~ 255 (358)
..++..+...++..+|.++.|+++||+ |||+.+.++..+..++.++.. .+ +...+.+.+++.|++.|+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~------GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY------GRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 457788999999999999999999999 667778888888888777766 45 67788889999999999999
Q ss_pred ccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 256 SLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 256 ~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
...+.++.|..|+++||...++.+.+..+|.. ++..+ ++...... +.+.||..+++..+..++..+..
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~-~~~~~-~~~~~~~~--------~~~~Wr~~~~~~~~~~l~~~~~~ 188 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGIL-LASLI-GYIVSYYS--------DNWGWRILLIFGAIPSLLVLLLR 188 (451)
T ss_pred cccccccccccccccccccccccccccccccc-ccccc-cccccccc--------ccccccccccccccccccccccc
Confidence 99999999999999999999999888888874 44433 33221111 11238888888777776655443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=87.71 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=97.2
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH----hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcC
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE----SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMG 211 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~ 211 (358)
..+.+.|++.+.+..+.+....+..-.+..|.|.+.. -.|++..+..++..+...++.+|.+++|.++||+.++++
T Consensus 236 Dl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~ 315 (493)
T KOG1330|consen 236 DLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFP 315 (493)
T ss_pred HHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcc
Confidence 3445555555544444444443333344555564443 237777777777888999999999999999999877543
Q ss_pred C-chHHH---HHH-HHHHHHHHHHHHHhcCchh--HHHHHHHHHh-hhhcccccHHHHHHHhhCCcchHHHHHHHHHHhh
Q 018271 212 W-ERPSF---IAI-TLATMSVGHIVVASGFPGN--LYVGSIIVGV-CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASP 283 (358)
Q Consensus 212 ~-gr~~~---~~~-~~~~~~~~~~l~~~~~~~~--l~~~~~l~g~-~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ 283 (358)
. +|... ... +..+.+..+++........ ..+..++.|. .....++....+..|..|+++|.+++++..+...
T Consensus 316 ~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h 395 (493)
T KOG1330|consen 316 NSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEH 395 (493)
T ss_pred cccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHH
Confidence 2 22211 111 1111222222222111122 2223333343 2234566666778889999999999999866665
Q ss_pred hHHHHHhHHHHHHHHhhcc
Q 018271 284 VGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 284 ig~~i~gp~i~g~l~~~~g 302 (358)
+-+-.-+|.+.|.+.|+.-
T Consensus 396 ~fgd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 396 IFGDAASPYIVGILSDKLR 414 (493)
T ss_pred HhccCCCcceehhHHHHhh
Confidence 5443466779999988753
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-06 Score=80.52 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=75.2
Q ss_pred HHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHH-HHhc---Cc
Q 018271 163 TVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIV-VASG---FP 237 (358)
Q Consensus 163 ~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l-~~~~---~~ 237 (358)
...+++.|.+ ..|++..+++.+.++..+...+..++.|+++||.++|+. .||+.+..+.+...+..++ +..+ +.
T Consensus 27 ~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~G-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (448)
T PRK09848 27 GALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWG-KFRPFLLFGTAPLMIFSVLVFWVPTDWSH 105 (448)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCc-CchHHHHHHHHHHHHHHHHHHhCcCCCCc
Confidence 3334444555 559999999999999999999999999999999877653 3444544444433333333 2221 11
Q ss_pred h----hHHHHHHHHHhhhhcccccHHHHHHHhhCC-cchHHHHHHHHHHhh
Q 018271 238 G----NLYVGSIIVGVCYGCQWSLMPTITYEIFGV-GHMGTIFNTIAIASP 283 (358)
Q Consensus 238 ~----~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~-~~~g~~~g~~~~~~~ 283 (358)
. ...+..++.+++++.......++..++... ++|....++-..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~ 156 (448)
T PRK09848 106 SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAAS 156 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 1 123334566667776666666666666644 567776655544333
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-06 Score=79.16 Aligned_cols=177 Identities=10% Similarity=0.061 Sum_probs=123.0
Q ss_pred HHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHH
Q 018271 154 LCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV 232 (358)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~ 232 (358)
+...+..-....++..+..+ .|+++..++.++.+.=+..++.-|+.|.++||..+|++ .||+.++.+.+..++..+++
T Consensus 22 ~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~G-rfRP~lL~g~ip~~i~~~l~ 100 (467)
T COG2211 22 FASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWG-RFRPWLLWGAIPFAIVAVLL 100 (467)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccc-cccHHHHHHhHHHHHHHHHH
Confidence 33333444455567766665 59999999999999999999999999999999876665 55666777766666666655
Q ss_pred H-hcC----c--hhHHHHHHHHHhhhhcccccHHHHHHHhhC-CcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCC
Q 018271 233 A-SGF----P--GNLYVGSIIVGVCYGCQWSLMPTITYEIFG-VGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG 304 (358)
Q Consensus 233 ~-~~~----~--~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~-~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~ 304 (358)
. .++ . ...++..++.++++..+.....++.+|+.. +++|.+..++-..+..+|.+ +...+.+.+....+.+
T Consensus 101 F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~-l~~~~~~plv~~~g~~ 179 (467)
T COG2211 101 FITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGG 179 (467)
T ss_pred HcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC
Confidence 5 332 1 224456678888888888788888888875 47899999998888888875 4455666666655531
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 305 EGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 305 ~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
+ ...+|+....+++++..+..+.++.-.
T Consensus 180 ~-----~~~g~~~~~~~~~vi~~i~~l~~~~~v 207 (467)
T COG2211 180 D-----KALGYQGTALVLGVIGVILLLFCFFNV 207 (467)
T ss_pred c-----chhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 022477777777776666665554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.6e-06 Score=80.72 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcC---------chhHHHHHHHHHhh
Q 018271 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF---------PGNLYVGSIIVGVC 250 (358)
Q Consensus 181 a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~---------~~~l~~~~~l~g~~ 250 (358)
.+++.++..+...+..++.+++-+|.++|. +....+.+++++.+++++.+. ..+ .+++....++.|++
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~g 395 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIG 395 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH
Confidence 456666777777777777777777765553 344556677777777766543 211 33567778899999
Q ss_pred hhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCcccc-ccchHHHHHHHHHHHHHH
Q 018271 251 YGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG-THCFMLSFLIMASVAFVG 329 (358)
Q Consensus 251 ~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g-~~~~~~~f~~~~~~~~~~ 329 (358)
.+...+....++.+..|++.||..+|+..++..+|+. ++..+.+....... ..+... ...+.+.|...++.+++.
T Consensus 396 e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~-~~g~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~~~~~~~ 471 (500)
T PRK09584 396 ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL-IAGYVANLMAVPDN---VTDPLMSLEVYGRVFLQIGIATAVI 471 (500)
T ss_pred HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccc---cccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877774 44333332211000 000000 112778888888777766
Q ss_pred HHHHHHHHHHhH
Q 018271 330 CLVAFLLFIRTR 341 (358)
Q Consensus 330 ~~~~~~~~~~~~ 341 (358)
+++.+++.+..+
T Consensus 472 a~~~~~~~~~~~ 483 (500)
T PRK09584 472 AVLMLLTAPKLN 483 (500)
T ss_pred HHHHHHHHHHHH
Confidence 655555444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=74.29 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=94.8
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHH-----H-hc-------C
Q 018271 170 IGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV-----A-SG-------F 236 (358)
Q Consensus 170 ~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~-----~-~~-------~ 236 (358)
+..|++.+..-.+.++++..+.+.. |+.+|+.||+.+.-..++|.+.+..+..+.+.+..+. . .. +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap~-R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAPL-RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHH-HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 3457888888888888888887664 9999999999752233345555555555544433322 1 12 1
Q ss_pred ch----hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhcc
Q 018271 237 PG----NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 237 ~~----~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g 302 (358)
.+ ...+...+.|++.+...+...++..|..++++|++..++.....-+|- +++..+.|.+.+.+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~-iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGI-IVSAIVFGRLLDPFS 153 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHccccC
Confidence 11 133456788888888888889999999999999999999988877777 578889999888765
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=73.06 Aligned_cols=136 Identities=11% Similarity=0.125 Sum_probs=97.1
Q ss_pred hhHHhcHHHHH-HhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCch
Q 018271 161 LATVNNISQIG-ESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPG 238 (358)
Q Consensus 161 ~~~~~~l~~~~-~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~ 238 (358)
..+.+..+.+. +.+|+++.+.+-+.+..++.+.+-+.......||.. . .-+..+.....++.-..+++. ...+.
T Consensus 278 s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~---~-~~~a~l~~~l~~~vP~~llls~~~~~~ 353 (451)
T KOG2615|consen 278 SGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYK---G-NIKAVLLFSLLLIVPAFLLLSLARTPV 353 (451)
T ss_pred HHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccc---c-chhhHHHHHHHHHHHHHHHHhccccch
Confidence 34444444443 466999999999888888877777777676666652 1 133344444444444444444 45566
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc
Q 018271 239 NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 301 (358)
Q Consensus 239 ~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~ 301 (358)
.++....+..+......+....++....|.++||+..|+....+.++-+ +||.+.|.+..+.
T Consensus 354 ~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRa-iGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 354 VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARA-IGPLVSGVIFSWS 415 (451)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH-hhhhhhheeEEEe
Confidence 6777778888877777777788888999999999999999999999995 8999999887654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-05 Score=75.33 Aligned_cols=159 Identities=19% Similarity=0.139 Sum_probs=110.5
Q ss_pred cHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hc----CchhH
Q 018271 166 NISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SG----FPGNL 240 (358)
Q Consensus 166 ~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~----~~~~l 240 (358)
..|.+-+++|+++++...+.++..+.-.+ .++.|.++|-+.-+.. +||+.++++.++..++.+.++ .+ +....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~-rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGY-RRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCC-cchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 34455567899999988888888887665 7788999998743322 566666666666655444443 22 22334
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHhhCC--cchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHH
Q 018271 241 YVGSIIVGVCYGCQWSLMPTITYEIFGV--GHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLS 318 (358)
Q Consensus 241 ~~~~~l~g~~~g~~~~~~~~~~~e~f~~--~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~ 318 (358)
.+..++..++....-.+.-+.+.|.-.. +.+|...++......+|+ +++..+.|.+.+..+ ++..
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~-lv~~~l~G~l~~~~~------------~~~~ 156 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGS-LVGSLLSGPLLDSFG------------PQGV 156 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHH-HHHHHhhhhhhhcCC------------CeEE
Confidence 4455566666666666666777777632 337888888888888898 478889999998876 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018271 319 FLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~~~ 339 (358)
|.+.+.+.++..+..+++.+|
T Consensus 157 f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 157 FLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred ehHHHHHHHHHHHHHHHhhhh
Confidence 888887777776666555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=3e-06 Score=74.62 Aligned_cols=67 Identities=37% Similarity=0.526 Sum_probs=60.7
Q ss_pred CeeeeeecCC-----CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHhhhhHHh
Q 018271 1 MSLVRIHGTN-----SADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPLGIA 67 (358)
Q Consensus 1 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~i~ 67 (358)
|.++|++++. +++|+++|..++++++.+++|+++.++++++.+.+++..+...++++++++.|+.+|
T Consensus 178 ~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~ 249 (250)
T PF06813_consen 178 MFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIP 249 (250)
T ss_pred hhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 4678999752 479999999999999999999999999999999999999998888899999999887
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00021 Score=71.45 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=63.7
Q ss_pred cccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHH-HHHHhhhHhHHHHHHHh
Q 018271 134 DMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIVL 207 (358)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i-~~~~g~~~~G~lsDr~~ 207 (358)
..+.+++++|+.+....++..+......++.+++|-|++ ++|.+.+.+..++....+ +.++|.+++|++.-|+.
T Consensus 382 p~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 382 PKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 446788999999999999999988888999999999998 569999999999876665 56788999999988873
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00026 Score=63.09 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=102.4
Q ss_pred hhHHhcHHHHHHhcCCCc--hhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcC-
Q 018271 161 LATVNNISQIGESLGYPT--SAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGF- 236 (358)
Q Consensus 161 ~~~~~~l~~~~~~~G~s~--~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~- 236 (358)
.......+.+..+.+.+. ...++..+...+...++.++.|.++||+ |||..+..+.....++.++.. ..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
T COG0477 19 GLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY------GRRKVLIIGLLLFLLGTLLLALAPNV 92 (338)
T ss_pred chHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc------cchHHHHHHHHHHHHHHHHHHhCccc
Confidence 344456667777766655 3678888899999999999999999999 444444444433333333333 233
Q ss_pred -chhHHHHHHHHHhhhhcccccHHHHHHHhhCC-cchHHHHHHHHH-HhhhHHHHHhHHHHHHHHhhccCCCCCcccccc
Q 018271 237 -PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-GHMGTIFNTIAI-ASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTH 313 (358)
Q Consensus 237 -~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~-~~~g~~~g~~~~-~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~ 313 (358)
...+.+.+...|++.+...+...+++.|.+|. +.++...+.... ...+|. +++|.+++.+... .. .
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---------~ 161 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGL-ALGPLLAGLLLGA-LL---------W 161 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-Hh---------c
Confidence 44566666778888888888889999999997 678888888877 466677 5788777777765 21 1
Q ss_pred chHHHHHHHHHHHH
Q 018271 314 CFMLSFLIMASVAF 327 (358)
Q Consensus 314 ~~~~~f~~~~~~~~ 327 (358)
.|+..|........
T Consensus 162 ~~~~~~~~~~~~~~ 175 (338)
T COG0477 162 GWRAAFLLAALLGL 175 (338)
T ss_pred chHHHHHHHHHHHH
Confidence 18886655554443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.4e-05 Score=74.35 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=97.3
Q ss_pred HHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhh--hhcccccHHHHHHHhh
Q 018271 189 SIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVC--YGCQWSLMPTITYEIF 266 (358)
Q Consensus 189 ~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~--~g~~~~~~~~~~~e~f 266 (358)
.+...+..+..|.++||+ |||..+........+..+...... +++++ +.++. .+..++...++++|..
T Consensus 72 ~~~~~i~s~~iG~lSD~~------grk~~L~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRY------GRKVVLLLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred HHHHHHHHhhhHHhhhhh------hhhhhHHHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheeecc
Confidence 577788899999999999 677777766666665555444333 22222 33332 3345667788999999
Q ss_pred CCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 267 GVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 267 ~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
..+.|...+|+.+.....+.. .+|.+++++....+ +...|.+..+..+++.+-..+..+|+..
T Consensus 142 ~~~~R~~~~gll~~~~~~~~~-~~p~~~~~~~~~~~------------~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGLV-IGPALGGYLVKFLG------------IALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred chhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcC------------chHHHHHHHHHHHHHHHHHhhccccccC
Confidence 999999999999987777774 78999999999877 8899999988888887766666665543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.4e-05 Score=54.43 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=49.3
Q ss_pred HHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHh
Q 018271 151 VAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVL 207 (358)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~ 207 (358)
..+++..++...+..++|.+.++.|++..+.+.+.++..+...++++++|+++||++
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~ 63 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFG 63 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344555555566778899999999999999999999999999999999999999995
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00054 Score=64.48 Aligned_cols=142 Identities=8% Similarity=0.021 Sum_probs=81.2
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc---CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL---GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
..++..+++..+...+...+...+++-..++...+-++. +-+..--|..-++..+.+.++.+..|++..++.+.
T Consensus 239 ~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~--- 315 (412)
T PF01770_consen 239 DFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW--- 315 (412)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH---
Confidence 345556666553333333333344444555555555544 22333346667777888888999999986666321
Q ss_pred chHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHH
Q 018271 213 ERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIA 281 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~ 281 (358)
+ ...+.+..++.+..++++. ..+.+..++..++++..+-...++...-++.....+..|..+|+-...
T Consensus 316 ~-~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 316 G-ELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFV 384 (412)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHH
Confidence 1 2223333344444444444 456666777777777766666666666666666667777777665443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.7e-06 Score=83.65 Aligned_cols=168 Identities=14% Similarity=0.045 Sum_probs=0.0
Q ss_pred cccHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHH-HHHHhhhHhHHHHHHHhhhcC
Q 018271 134 DMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSI-WNFLGRFGGGYVSDIVLHRMG 211 (358)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i-~~~~g~~~~G~lsDr~~~k~~ 211 (358)
....+++++|+.+....++..+......++.+++|.|++ +++.+++++++++....+ ++++|.+++|++..|+.-+..
T Consensus 295 ~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~ 374 (539)
T PF03137_consen 295 PKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSAR 374 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHH
Confidence 346788999999998888888888888899999999998 569999999998876665 678899999999998843311
Q ss_pred CchHHHHHHHHHHHHHH---HHHHH--------h-cCc-------------------------------------hhH--
Q 018271 212 WERPSFIAITLATMSVG---HIVVA--------S-GFP-------------------------------------GNL-- 240 (358)
Q Consensus 212 ~gr~~~~~~~~~~~~~~---~~l~~--------~-~~~-------------------------------------~~l-- 240 (358)
+...+..+..++..+. .+++. . ..+ ..+
T Consensus 375 -~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~ 453 (539)
T PF03137_consen 375 -GAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIP 453 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHH
Confidence 1111111111111111 11110 0 000 001
Q ss_pred -HHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhcc
Q 018271 241 -YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 241 -~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g 302 (358)
++..++.-+..+........++-...++++|+.+.|+..+..++-+.+-||++.|.+.|+.-
T Consensus 454 Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 454 FLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 11111111222222222333444667889999999999888777555899999999999753
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.001 Score=54.24 Aligned_cols=107 Identities=7% Similarity=-0.058 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHH
Q 018271 184 LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITY 263 (358)
Q Consensus 184 ~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~ 263 (358)
-.++......+..++.+.+.+++ +.|+.+.++.+..++.......++.+.++...++.|++.+..|.....++.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~l------g~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKL------GPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 34555566677777888888998 677888888777776555555566677888899999999999999999999
Q ss_pred HhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 264 EIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 264 e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
+...++.+++..|+.-.....+. ++|.++.-.+
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~-i~G~~~~~~~ 148 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSL-IFGNLFLFFI 148 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 98888889998888866666665 4555443333
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00074 Score=63.54 Aligned_cols=149 Identities=13% Similarity=0.058 Sum_probs=94.4
Q ss_pred chhHHHHHHHHHHhhhhh-hhHHhcHH--HHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 143 TLNFWLLFVAMLCGMGSG-LATVNNIS--QIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~~~l~--~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
.++-|.+++.+.+...+. ..++.+-+ .+.+. +| +...+-|+..++.+.++.-.+.+-|+.|++ |-|..+
T Consensus 40 y~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~------GLR~a~ 112 (480)
T KOG2563|consen 40 YPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF------GLRTAL 112 (480)
T ss_pred chhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc------chHHHH
Confidence 355576666555444332 22333332 23443 37 666677888899999999999999999999 677778
Q ss_pred HHHHHHHHHHHHHHH--hcC-----ch--hHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 219 AITLATMSVGHIVVA--SGF-----PG--NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 219 ~~~~~~~~~~~~l~~--~~~-----~~--~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
.++.++.+++..+=. ... .+ ....+-.+.+...-....+-.-+..-+||+++|+++..+..+++.+|.. +
T Consensus 113 llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGva-v 191 (480)
T KOG2563|consen 113 LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVA-V 191 (480)
T ss_pred HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHH-H
Confidence 888888888776532 111 11 1223444444444444444445666789999999999998888888774 5
Q ss_pred hHHHHHHHHh
Q 018271 290 SVRIIGYIYD 299 (358)
Q Consensus 290 gp~i~g~l~~ 299 (358)
|-++...+..
T Consensus 192 g~llppilV~ 201 (480)
T KOG2563|consen 192 GFLLPPILVP 201 (480)
T ss_pred HhhccceecC
Confidence 5444444443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0019 Score=62.85 Aligned_cols=147 Identities=16% Similarity=0.028 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-h-cCchh-HHHHHHHHHhhhhcccccH
Q 018271 182 NSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S-GFPGN-LYVGSIIVGVCYGCQWSLM 258 (358)
Q Consensus 182 ~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~-~~~~~-l~~~~~l~g~~~g~~~~~~ 258 (358)
++..++..+...+-.|+.|-++|+-+ .||+++.+...+..+...++. . ++.+. ..+..++.-++++......
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~-----~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy 147 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGG-----RRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY 147 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc-----cchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888999999999875 445555555555555555444 2 33333 2333344446677777788
Q ss_pred HHHHHHhhCCcch--------------------------HHHHHHHHHHhhhHHHHHhHHHHHHH-HhhccCCCCCcccc
Q 018271 259 PTITYEIFGVGHM--------------------------GTIFNTIAIASPVGSYVCSVRIIGYI-YDNVASGEGNSCNG 311 (358)
Q Consensus 259 ~~~~~e~f~~~~~--------------------------g~~~g~~~~~~~ig~~i~gp~i~g~l-~~~~g~~~~~~~~g 311 (358)
.++.+|+.+++.+ ++..|.....+.+|+. + .++.... ....+.. -.+
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~-v-~l~i~l~~~~~~~~~----~~~ 221 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGL-V-ALLISLLLVISPGST----ASN 221 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHH-H-HHHHHHHHHHcCCCc----ccc
Confidence 8999999998888 8888888888888885 3 3333332 2222221 001
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 312 THCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 312 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
....|.++.+.++..++..+..+++.++
T Consensus 222 ~~~~r~~~~~~a~ww~vfsiP~~~~~~~ 249 (477)
T PF11700_consen 222 TWAIRVAFLIVALWWLVFSIPLFLWLPD 249 (477)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2236888888888777776665555433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.2e-05 Score=70.82 Aligned_cols=153 Identities=17% Similarity=0.156 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcH--HH-HHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNI--SQ-IGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAI 220 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l--~~-~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~ 220 (358)
+++..+.+++++..++++.+..-- .. +-.+.+.+.++..++.+.++..+++-++++|++.||.. +-|+..++
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~f-----gir~gtii 115 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRF-----GIRLGTII 115 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhh-----hhhHHHHH
Confidence 567777778887777766554321 11 11244566667788889999999999999999999862 55555555
Q ss_pred HHHHHHHHHHHHH----hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHH
Q 018271 221 TLATMSVGHIVVA----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 296 (358)
Q Consensus 221 ~~~~~~~~~~l~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~ 296 (358)
..++..++.+.++ ....+.+...++++|++.-..-.....++.-.|..+..+.++|+.....++|+ ...-.+.++
T Consensus 116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gs-tvNf~lm~~ 194 (459)
T KOG4686|consen 116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGS-TVNFLLMPF 194 (459)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhc-eeeeeecHH
Confidence 5555556666554 23456778889999987665555667788888888999999999999999999 467777888
Q ss_pred HHhhcc
Q 018271 297 IYDNVA 302 (358)
Q Consensus 297 l~~~~g 302 (358)
++|..+
T Consensus 195 ly~~~~ 200 (459)
T KOG4686|consen 195 LYDTMG 200 (459)
T ss_pred HHHHHH
Confidence 888665
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.017 Score=56.31 Aligned_cols=154 Identities=13% Similarity=0.031 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcC-CchHHHHHHHHHHHHHHHHHHH----h------cCchhHHHHHHHHH
Q 018271 180 AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMG-WERPSFIAITLATMSVGHIVVA----S------GFPGNLYVGSIIVG 248 (358)
Q Consensus 180 ~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~-~gr~~~~~~~~~~~~~~~~l~~----~------~~~~~l~~~~~l~g 248 (358)
..+++-++..+.-++..|+.+++=.|..+|+. .....=..+++++.+++.+.+. . .+..++++..++++
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 35677788888888888888888667644321 1111113455555555554332 1 13345666777888
Q ss_pred hhhhcccccHHHHHHHhhCCcchHHHHHHHHHHh-hhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHH
Q 018271 249 VCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIAS-PVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAF 327 (358)
Q Consensus 249 ~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~-~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~ 327 (358)
++.-...++..+.++++.|++.+|..+|...+.. .+|+. ++..+.+...+....++.........|...|...+...+
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 467 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANY-LAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGAL 467 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHH
Confidence 8888888999999999999999999999996643 56663 444444433211000000000012237788888887766
Q ss_pred HH-HHHHH
Q 018271 328 VG-CLVAF 334 (358)
Q Consensus 328 ~~-~~~~~ 334 (358)
+. .++.+
T Consensus 468 ~~~~~~~~ 475 (493)
T PRK15462 468 ACVGVVLM 475 (493)
T ss_pred HHHHHHHH
Confidence 66 44433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0049 Score=59.61 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCC-----CchhhHHHHHHHHHHHHHh-hhHhHHHHHHHhhhcCCchHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGESLGY-----PTSAINSLVSLWSIWNFLG-RFGGGYVSDIVLHRMGWERPSF 217 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~-----s~~~a~~~~~~~~i~~~~g-~~~~G~lsDr~~~k~~~gr~~~ 217 (358)
++++.+.+.+||..+.++. +-.+=...++ +.+...++.+...+...+. .++.+++++|+ +|+.+
T Consensus 7 ~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~------~~~~l 76 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL------SKEAL 76 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHh
Confidence 4566666666666644432 2222222334 3345666666555555554 88899999999 44444
Q ss_pred HHHHHHHHHHHHHHHH---hc--C---------------------------chhHHHHHHHHHhhhhcccc-cHHHHHHH
Q 018271 218 IAITLATMSVGHIVVA---SG--F---------------------------PGNLYVGSIIVGVCYGCQWS-LMPTITYE 264 (358)
Q Consensus 218 ~~~~~~~~~~~~~l~~---~~--~---------------------------~~~l~~~~~l~g~~~g~~~~-~~~~~~~e 264 (358)
.......+...+.+++ .+ + .|...+..+...+......+ +.+.++.|
T Consensus 77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333333333222221 11 1 11111111222222233344 67899999
Q ss_pred hhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHh
Q 018271 265 IFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 299 (358)
Q Consensus 265 ~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~ 299 (358)
.+..++-.+-+++.++++++|. ++++.+..++.+
T Consensus 157 i~t~~qakRfy~l~~~ganlg~-i~sg~~~~~~~~ 190 (472)
T TIGR00769 157 ITTIDEAKRFYALFGLGANVAL-IFSGRTIKYFSK 190 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999 478877777664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0087 Score=58.93 Aligned_cols=159 Identities=17% Similarity=0.206 Sum_probs=85.9
Q ss_pred HhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHH-HHHHHHH-HHHHH-H
Q 018271 155 CGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF-IAITLAT-MSVGH-I 230 (358)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~-~~~~~~~-~~~~~-~ 230 (358)
+..++...+......++. -+|-+....+.+++++..+..+|..+++++.++. .++.. +-+...+ ..+.. +
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~------~~~~~~~e~~i~l~~~~~~~l 98 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA------AAGFVAVELLLALLGGLSALI 98 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444433333333 4588888888899999999999999988876433 12211 1111111 11111 1
Q ss_pred HHHhcC----c-hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHH-hhccCC
Q 018271 231 VVASGF----P-GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY-DNVASG 304 (358)
Q Consensus 231 l~~~~~----~-~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~-~~~g~~ 304 (358)
+..... . ..++...++.++..|...++...+..+.. .++.|...|-....+.+|+ ++|.++.|++. ...|
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa-~~G~l~~~~vLlp~lG-- 174 (521)
T PRK03612 99 LYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGA-LVGGLAFPFLLLPRLG-- 174 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHH-HHHHHHHHHHHHHhcc--
Confidence 111111 1 11233445566677766665554444321 2235677788888888888 47888888765 4666
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 305 EGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 305 ~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
-..+.++.+.+.++++++.
T Consensus 175 ----------~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 175 ----------LIRTAALTGSLNLLAALVF 193 (521)
T ss_pred ----------hHHHHHHHHHHHHHHHHHH
Confidence 4444445555555444333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0047 Score=59.47 Aligned_cols=120 Identities=14% Similarity=0.075 Sum_probs=71.0
Q ss_pred CCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-----------hcCchhHHHHH
Q 018271 176 YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-----------SGFPGNLYVGS 244 (358)
Q Consensus 176 ~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-----------~~~~~~l~~~~ 244 (358)
++....+.+..+.+++..+|..+.. ++.++. .-|.++....++.++..+.-. .++.+..+.-.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~----~~~~~~--~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~ 325 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYR----KYFSNW--SWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDT 325 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH----HHHhCC--CHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhH
Confidence 7776666666555566666555544 444433 334444444444443332210 01111111222
Q ss_pred HHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhcc
Q 018271 245 IIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 245 ~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g 302 (358)
++..+..+..+-.....++|+.|+..-|+.+++.....++|.. ++..++..+.+..+
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~-~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSS-VSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 3444444444445556789999999999999999999999984 78888888887776
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.02 Score=54.98 Aligned_cols=146 Identities=13% Similarity=0.074 Sum_probs=89.1
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH---hcCCCchh-hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE---SLGYPTSA-INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~G~s~~~-a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
..+++++++...+...++........+....|+... ..+.+... .+.......++..++....+.+++|..+ .
T Consensus 233 ~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~---f 309 (461)
T KOG3098|consen 233 TFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG---F 309 (461)
T ss_pred HHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh---c
Confidence 345566777766666555554444445555554433 22333222 2333344455666666667777777632 3
Q ss_pred chHHHHHHHHHHHHHHHHHHH--hcC-----------------chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHH
Q 018271 213 ERPSFIAITLATMSVGHIVVA--SGF-----------------PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGT 273 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~--~~~-----------------~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~ 273 (358)
||++.+.++..+..+..++.. .+. .....+..++.|++-+......+.++.+.+ +++|.+
T Consensus 310 g~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~ 388 (461)
T KOG3098|consen 310 GRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQ 388 (461)
T ss_pred ccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHH
Confidence 777777776666665555432 110 123455668888888888888899999999 588888
Q ss_pred HHHHHHHHhhhHH
Q 018271 274 IFNTIAIASPVGS 286 (358)
Q Consensus 274 ~~g~~~~~~~ig~ 286 (358)
+.++.-.-..+++
T Consensus 389 ~fsi~kfyq~~~s 401 (461)
T KOG3098|consen 389 AFSLFKFYQSVAS 401 (461)
T ss_pred HHHHHHHHHHHHH
Confidence 8888876666666
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.018 Score=55.79 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=96.9
Q ss_pred HHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhH-HHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Q 018271 168 SQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGG-YVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGS 244 (358)
Q Consensus 168 ~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G-~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~ 244 (358)
+.+.+ .+|++..+.+.+.+..++.+.++.++.. .+.-.+ +-+..+..++....+....++ .++.+.++...
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l------~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~ 338 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL------GEKRLISLGLLSEFLQLLLFAFATETWMMFAAG 338 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhHhhHHHHHHHHHHHHHHHhccchhhhHHH
Confidence 34444 5599999999999998988888888877 565556 444577778887888777777 45555555554
Q ss_pred HHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccC
Q 018271 245 IIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVAS 303 (358)
Q Consensus 245 ~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~ 303 (358)
.+. ...+...+...+.++.+.+++++|+.+++......+.+ +++|.+.+.++..+..
T Consensus 339 v~~-~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~-~~~~~~~~~i~~~t~~ 395 (463)
T KOG2816|consen 339 VVV-ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSG-VVSPALYGNIFALTLD 395 (463)
T ss_pred HHH-HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhh-hhhHHHHHHHHHHHHH
Confidence 444 34455667788889999999999999999999999999 4789999988766543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.45 E-value=2.6e-05 Score=76.83 Aligned_cols=167 Identities=15% Similarity=0.185 Sum_probs=2.7
Q ss_pred HHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcC------
Q 018271 163 TVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGF------ 236 (358)
Q Consensus 163 ~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~~------ 236 (358)
+...+.++-+.+++++++++++.+.+-+++.+..++..++.+|. +|.+++..+.++++++.++++.++
T Consensus 22 ~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 22 VNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 33456677778899999999999999999999999988888775 566667777777777666542100
Q ss_pred ---------------------------------------------chhHHHHHHHHHhhhhcccccHHHHHHHhhCCcch
Q 018271 237 ---------------------------------------------PGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM 271 (358)
Q Consensus 237 ---------------------------------------------~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~ 271 (358)
...++++-++.|+|....+++..+|+=|..++++-
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 01134455788888888999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCC------Ccccccc----chHHHHHHHHHHHHHHHHHHHHH
Q 018271 272 GTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG------NSCNGTH----CFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 272 g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~------~~~~g~~----~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
+...|+......+|+. +|=+++|...+.+-.... ..-..+. .|...|.+.+.+.++.++..+.+
T Consensus 176 plYiGi~~~~~~lGPa-~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 176 PLYIGILYAMSILGPA-LGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccchhhhhHHhhccHH-HHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999888888884 676666665544321110 0111111 35566666777766666554444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00037 Score=63.99 Aligned_cols=97 Identities=6% Similarity=-0.029 Sum_probs=72.3
Q ss_pred cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCC----Cccc
Q 018271 235 GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG----NSCN 310 (358)
Q Consensus 235 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~----~~~~ 310 (358)
.++..+++..++.|.|.+...+..+++++++.+++++++..++....+.+|+ +++|.+++.+......+.. ..-.
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~-~~gP~i~~~~i~~~~~~~~~~~~~~~~ 86 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGT-TVAPLFGGSLILSGAGDLSMQVATANA 86 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHH-HHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence 3456677888999999999999999999999999999999999999999999 5899999988854211000 0000
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 018271 311 GTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 311 g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
..+.|+..|++.+.+.++.++.
T Consensus 87 ~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 87 EAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 0123888988777765555543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0044 Score=59.51 Aligned_cols=137 Identities=12% Similarity=0.061 Sum_probs=81.0
Q ss_pred HHHhhhchhH--HHHHHHHHHhhhhhhhHHhcHHHHHHhcCCC-chhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 137 ILQSVCTLNF--WLLFVAMLCGMGSGLATVNNISQIGESLGYP-TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 137 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s-~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
+++..+|+.. |.+|.+ +...+++-..++...+-++..-+ ..--|..-++..+.+.+..+..|++-.++ .
T Consensus 255 ~~~~y~n~~vl~WSlWwa--~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w------~ 326 (511)
T TIGR00806 255 LVTIYRNPQLLLWSLWWV--FNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW------A 326 (511)
T ss_pred HHHHhcCcchhhhhHHHH--HHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc------h
Confidence 4455666544 444443 23333344444444444443211 11334555667777788888889886655 2
Q ss_pred h--HHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHH
Q 018271 214 R--PSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIA 281 (358)
Q Consensus 214 r--~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~ 281 (358)
+ ...+.+..++.+..++++. .++.+..++..++++..+....++....++.....+..|..+|+-+..
T Consensus 327 ~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfv 397 (511)
T TIGR00806 327 RWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFV 397 (511)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHH
Confidence 3 2333333344444444444 556677888888888888888888888888777777778777776543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.056 Score=51.02 Aligned_cols=107 Identities=9% Similarity=0.010 Sum_probs=72.3
Q ss_pred chhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHhhhhc
Q 018271 178 TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA----SGFPGNLYVGSIIVGVCYGC 253 (358)
Q Consensus 178 ~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~----~~~~~~l~~~~~l~g~~~g~ 253 (358)
.....++...+.+|-.++|=-.-++ |+ .+.+++.+..++..+.+++-+ .++.+.+++.++..|+..|.
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri------r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI------RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh------hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 3455677778888877777543332 33 444555544444443333222 24455666778888998898
Q ss_pred ccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHH
Q 018271 254 QWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 254 ~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
.+.-....+.|..++++|--++|...++-.+|-. ++..+
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~-lAgll 390 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGIL-LAGLL 390 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHH-HHHHH
Confidence 8888888888888999999999999999988874 55443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=61.47 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHH---hcC-c------hhHHHHHHHHHhhhhcccccHHHHHHHhhCCc---chHHHHHHHHHHhh
Q 018271 217 FIAITLATMSVGHIVVA---SGF-P------GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVG---HMGTIFNTIAIASP 283 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~---~~~-~------~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~---~~g~~~g~~~~~~~ 283 (358)
.+.++.++.+++++++. .+. . ..++++..+.++|.|+.=+...++..|.|+++ ++-+.+.+...+.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 45667777777777632 222 2 35788888999999999999999999999876 46788889999999
Q ss_pred hHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 284 VGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 284 ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
+|+. +++.+.+++.++.| |...|.+.++..+++.+..
T Consensus 83 ~G~~-~~~~~~~~i~~~~~------------~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 83 IGSL-FSPTLVPYIQQNYG------------WFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHH-HHHHCCCHHHHCS-------------HHHHHHHHHHHHHHHHHHH
T ss_pred hhhH-hhcccchhhccccc------------hhhhhhHHHHHHHHHHHHH
Confidence 9994 88889999998887 9999999998888887543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0031 Score=45.53 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=56.9
Q ss_pred hhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH
Q 018271 159 SGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA 233 (358)
Q Consensus 159 ~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~ 233 (358)
+-+.+...+|.+.++.++|.++++++.+...++..+|.+...++.++. .++..+..+.+...+..+.++
T Consensus 7 gRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS------RPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred HHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999999999999999999999999999888875 455666667777766666665
|
Note that many members are hypothetical proteins. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0013 Score=66.04 Aligned_cols=169 Identities=15% Similarity=0.170 Sum_probs=118.0
Q ss_pred HHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhc-------
Q 018271 163 TVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASG------- 235 (358)
Q Consensus 163 ~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~------- 235 (358)
+.+.+.++=+.+++++++.+++.+.+-+++.+...+..+...|. .|..++.++.++++++.++.+.+
T Consensus 116 ~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~------HrPr~Ig~G~~~m~lgsll~alPHf~~~~y 189 (735)
T KOG3626|consen 116 FNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG------HRPRWIGIGLVLMGLGSLLFALPHFFSGPY 189 (735)
T ss_pred hhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc------CccceeeechhHHHHHHHHHhChHHhcCcc
Confidence 34455566667799999999999999999999999888887776 55566666666666666554211
Q ss_pred -------------C--------------------------------ch-hHHHHHHHHHhhhhcccccHHHHHHHhhCCc
Q 018271 236 -------------F--------------------------------PG-NLYVGSIIVGVCYGCQWSLMPTITYEIFGVG 269 (358)
Q Consensus 236 -------------~--------------------------------~~-~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~ 269 (358)
. ++ .+++.-++.|+|....+++..+|+=|...++
T Consensus 190 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~ 269 (735)
T KOG3626|consen 190 EYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK 269 (735)
T ss_pred hhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccccc
Confidence 0 01 1334456788888888999999999999989
Q ss_pred chHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCC-CCCcc---cccc---chHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 270 HMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASG-EGNSC---NGTH---CFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 270 ~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~-~~~~~---~g~~---~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
+-....|+......+|++ +|=+++++....+-.. .+..- ..++ +|...|++.+.+.++.++..+++-+
T Consensus 270 ~SplYlgi~~~~~~lGPa-iGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 270 NSPLYLGILYSMAILGPA-IGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred CCcHHHHHHHHHHHhhhH-HHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999998888984 7777777766655432 11111 1111 4667777888888888766555533
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00094 Score=62.90 Aligned_cols=141 Identities=13% Similarity=0.021 Sum_probs=98.3
Q ss_pred HHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHH
Q 018271 148 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSV 227 (358)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~ 227 (358)
.+....+...+.+..-.+++++|+++.|.+....+.......+.+.+-+++.|..|||...|.. +||+.+........+
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G-RRRPfI~~~s~~i~~ 114 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG-RRRPFILAGSLLIAV 114 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccc-cccchHHHhhHHHHH
Confidence 3334444445555566778999999999998888888778888889999999999999876664 556666666666666
Q ss_pred HHHHHH-hc--------C--c--hhHHHHHH-----HHHhhhhcccccHHHHHHHhhCCcchHH-HHHHHHHHhhhHHHH
Q 018271 228 GHIVVA-SG--------F--P--GNLYVGSI-----IVGVCYGCQWSLMPTITYEIFGVGHMGT-IFNTIAIASPVGSYV 288 (358)
Q Consensus 228 ~~~l~~-~~--------~--~--~~l~~~~~-----l~g~~~g~~~~~~~~~~~e~f~~~~~g~-~~g~~~~~~~ig~~i 288 (358)
+++++. .. + . ....+..+ +.=++....+...-++..|+...+++-+ ++++.....++|+.
T Consensus 115 ~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv- 193 (498)
T KOG0637|consen 115 SLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV- 193 (498)
T ss_pred HHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce-
Confidence 665543 11 1 1 11222233 3334555677788899999998877777 88888888888883
Q ss_pred Hh
Q 018271 289 CS 290 (358)
Q Consensus 289 ~g 290 (358)
+|
T Consensus 194 LG 195 (498)
T KOG0637|consen 194 LG 195 (498)
T ss_pred ee
Confidence 54
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.057 Score=51.99 Aligned_cols=101 Identities=12% Similarity=0.007 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHH--HHHHHHHHHHHHh----------cCchhHHHHHHHHH
Q 018271 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAIT--LATMSVGHIVVAS----------GFPGNLYVGSIIVG 248 (358)
Q Consensus 181 a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~--~~~~~~~~~l~~~----------~~~~~l~~~~~l~g 248 (358)
.-..+.+++++..+||.+..+.. +.+++ .| ++.+.. =++....++++.. .+.+..++..+++|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~--~p~~~--~~-~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~g 383 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM--WPDED--SR-WLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFG 383 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE--eeCCC--cc-chHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHH
Confidence 34567889999999999765431 21111 22 222211 1222222233321 23344567788999
Q ss_pred hhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHH
Q 018271 249 VCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 286 (358)
Q Consensus 249 ~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~ 286 (358)
+..|-..+....+.++..++++|-.+-.+...+-.+|-
T Consensus 384 ltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl 421 (437)
T TIGR00939 384 FSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGL 421 (437)
T ss_pred HhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998877888888888887777666666665555554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.027 Score=55.98 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=116.3
Q ss_pred HhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH
Q 018271 155 CGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA 233 (358)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~ 233 (358)
+--.+.+++..++-.|+. +++.+...+...+..+.-......+++++++|.+- +|.+.+.++..+..++.+++.
T Consensus 48 ~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~-----gry~tI~~~s~i~~~G~~~lt 122 (571)
T KOG1237|consen 48 LERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFL-----GRYFTINIGSLISLLGLFGLT 122 (571)
T ss_pred HHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554 66888788888888888888899999999999984 888888887777666654431
Q ss_pred ----hc-----------C------c-----hhHHHHHHHHHhhhhcccccHHHHHHHhhC---C-c--chHHHHHHHHHH
Q 018271 234 ----SG-----------F------P-----GNLYVGSIIVGVCYGCQWSLMPTITYEIFG---V-G--HMGTIFNTIAIA 281 (358)
Q Consensus 234 ----~~-----------~------~-----~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~---~-~--~~g~~~g~~~~~ 281 (358)
.. . + ..++...-+..+|.|+.-+...+.-+|.|+ + + .....+++....
T Consensus 123 ~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~ 202 (571)
T KOG1237|consen 123 LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFS 202 (571)
T ss_pred HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHH
Confidence 01 0 0 124445556667888888888889999998 2 2 234788888888
Q ss_pred hhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 018271 282 SPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 282 ~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~ 334 (358)
..+|.. ++..+.-++.+..+ |...|.+..++.+++.++.+
T Consensus 203 ~~~g~l-~a~t~~vyiq~~~~------------w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 203 QNGGAL-LAQTVLVYIQDNVG------------WKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHHHH-HHHHHHHhhhhccc------------ceeeccHHHHHHHHHHHHHH
Confidence 898884 66666677766666 99999999888888776543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=54.69 Aligned_cols=167 Identities=13% Similarity=-0.017 Sum_probs=101.3
Q ss_pred HhcHHHHHHhc----CCCchh----hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-h
Q 018271 164 VNNISQIGESL----GYPTSA----INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-S 234 (358)
Q Consensus 164 ~~~l~~~~~~~----G~s~~~----a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~ 234 (358)
.+.+|.|.++. |.+..+ .+...++..+...+-.|+.|.++|+.| .||+.+.+...+..+...++. .
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g-----~Rk~~~~~f~~i~i~~~~~L~~i 109 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPG-----PRKKFFGFFTAIGIISTFLLWFI 109 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCC-----CcchHHHHHHHHHHHHHHHHHHh
Confidence 34556555432 334332 344456777777888889999999997 445556666666666655555 3
Q ss_pred cC--chh-HHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCcc--
Q 018271 235 GF--PGN-LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSC-- 309 (358)
Q Consensus 235 ~~--~~~-l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~-- 309 (358)
++ ++. ..+..++...+..+......++.+++.++++.+...|+....+.+|+.+ +++.....-..+..+...-
T Consensus 110 ~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i--~li~~~~~~~~~~~~~~~~~l 187 (438)
T COG2270 110 PPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVI--LLIFVVLGFALGQQTGITIIL 187 (438)
T ss_pred CCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchH--HHHHHHHHHhcccccceeEEe
Confidence 32 333 3445566667777777788899999999988888887777777777753 4444322211111000000
Q ss_pred -----ccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 310 -----NGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 310 -----~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
-..+.-|.++.+.++-.++..+..+...
T Consensus 188 ~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v 220 (438)
T COG2270 188 LGLPPADGEDVRITGLLAALWWLLFALPMILNV 220 (438)
T ss_pred eccCccccccchhHHHHHHHHHHHHHhHHHhcc
Confidence 0222367788888877777776665543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.034 Score=53.25 Aligned_cols=153 Identities=14% Similarity=0.027 Sum_probs=92.5
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
++.-++++.+..-+ +..+.+....++...+..|+...|++....+.+=++..+.+..|.++..++.+|+|-- .
T Consensus 252 w~~Y~~q~vflas~-alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlv------r 324 (432)
T PF06963_consen 252 WRTYFRQPVFLASF-ALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLV------R 324 (432)
T ss_pred HHHHHhCHHHHHHH-HHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------h
Confidence 34445555554433 3333333345566677788888899999999999999999999999999999999632 2
Q ss_pred HHHHHHHHHHH----HHHHHH-hcCc-hhHHHHHHHHH-----hhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhH
Q 018271 217 FIAITLATMSV----GHIVVA-SGFP-GNLYVGSIIVG-----VCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVG 285 (358)
Q Consensus 217 ~~~~~~~~~~~----~~~l~~-~~~~-~~l~~~~~l~g-----~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig 285 (358)
.-..+...... +...+. ..++ ...-...++.| +|.-+.--....++.|..|+++||+..|.-+..+.+.
T Consensus 325 ~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf 404 (432)
T PF06963_consen 325 AGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLF 404 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHH
Confidence 22222222222 222222 2222 12222222223 2332333344567788899999999999998888877
Q ss_pred HHHHhHHHHHHHH
Q 018271 286 SYVCSVRIIGYIY 298 (358)
Q Consensus 286 ~~i~gp~i~g~l~ 298 (358)
.. + -.+.+.+.
T Consensus 405 ~l-l-~~~~~ii~ 415 (432)
T PF06963_consen 405 EL-L-SFVLTIIF 415 (432)
T ss_pred HH-H-HHHHHhcc
Confidence 74 3 34445444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.028 Score=54.20 Aligned_cols=83 Identities=13% Similarity=0.232 Sum_probs=63.6
Q ss_pred HHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHH
Q 018271 245 IIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMAS 324 (358)
Q Consensus 245 ~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~ 324 (358)
+++|.+...+.....++.+|+.++.+.++..|++...+.++.. .||++...++...| +++.+.+..+
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~-~~~~~~t~~~~~~g------------~~~v~~~~~~ 462 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARV-VGPIFSTAIFTLSG------------PRPVWIILLC 462 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhh-hhHHHHhhhHHhcC------------ccHHHHHHHH
Confidence 3445555545556778889999999999999999999999994 89999999999888 8888877777
Q ss_pred HHHHHHHHHHHHHHHh
Q 018271 325 VAFVGCLVAFLLFIRT 340 (358)
Q Consensus 325 ~~~~~~~~~~~~~~~~ 340 (358)
..++......++.+|.
T Consensus 463 ~~l~~~~l~~~~~~r~ 478 (488)
T KOG2325|consen 463 LLLVVAALWIVFLKRL 478 (488)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666665554544443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.68 Score=44.44 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcC-CCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH--HHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLG-YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI--AIT 221 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G-~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~--~~~ 221 (358)
..|.++...++.....-.+.+..|.++.+.. -+..-.+.+-..-.+..++..+..|...||..|.+. -|.... -.+
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~-~~~~l~~Qn~s 81 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKV-IRTSLVVQNLS 81 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhh-HHHHHHHHHHH
Confidence 4567778888888888888888998888772 233334444445555666777777888899855443 111111 112
Q ss_pred HHHHHHHHHHHH-hcC-----chhHHH---HHHHHHhhhhcccccHHHH------HHHhh--CCcchHHHHHHHHHHhhh
Q 018271 222 LATMSVGHIVVA-SGF-----PGNLYV---GSIIVGVCYGCQWSLMPTI------TYEIF--GVGHMGTIFNTIAIASPV 284 (358)
Q Consensus 222 ~~~~~~~~~l~~-~~~-----~~~l~~---~~~l~g~~~g~~~~~~~~~------~~e~f--~~~~~g~~~g~~~~~~~i 284 (358)
..+.++.++.+. ... .+.... ...+.|.. .-..+....+ +.-+. .++.+....+.+--.--+
T Consensus 82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i-~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ 160 (432)
T PF06963_consen 82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI-ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF 160 (432)
T ss_pred HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH-HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence 222222222222 111 112111 11122111 1011111111 11222 223344445555444444
Q ss_pred HHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 285 GSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 285 g~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
.- +++|++.|.+.+..+ +.....+.++..+++..+=.++..
T Consensus 161 ck-llaPl~vG~l~t~~s------------~~~~~~~i~~~N~~S~~vEy~~l~ 201 (432)
T PF06963_consen 161 CK-LLAPLFVGLLMTFAS------------PVIAAIFIAGWNLASVFVEYFLLA 201 (432)
T ss_pred HH-HHHHHHHHHHhhccC------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 589999999998776 778888888888888766555443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.059 Score=49.39 Aligned_cols=185 Identities=10% Similarity=0.119 Sum_probs=97.8
Q ss_pred HHHhhhchhH--HHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCch--hhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 137 ILQSVCTLNF--WLLFVAMLCGMGSGLATVNNISQIGESLGYPTS--AINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 137 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~--~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
..+..++|.. |-+|.+ +...+++-..++...+-++..-.+. --|..=++..+.++++.+..|.+.-.+.|
T Consensus 227 l~~~y~np~ll~WSlWwA--l~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r---- 300 (433)
T KOG3810|consen 227 LQECYSNPRLLKWSLWWA--LASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR---- 300 (433)
T ss_pred HHHHhcCchhhhhHHHHH--HhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch----
Confidence 3445566654 444433 2333334444555445454421111 11233345566777888888888766632
Q ss_pred chHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH
Q 018271 213 ERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
.+..++.++.+..+...+++. ..+.+..++..+++...+....++....+++....+..|..+|+-....- ++-.
T Consensus 301 ~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl----~lQs 376 (433)
T KOG3810|consen 301 WGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVAL----ILQS 376 (433)
T ss_pred hhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHH----HHHH
Confidence 233455555555554555555 55667777888888877777777777777777777777777776543322 2222
Q ss_pred HHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018271 292 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLV 332 (358)
Q Consensus 292 ~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~ 332 (358)
++.-...|..|-+=+ ....-.-|..=|.+.+++.+++..+
T Consensus 377 ilT~iVvd~~g~~L~-ir~Q~~~Y~~Yf~v~~~i~~~~~~~ 416 (433)
T KOG3810|consen 377 ILTLIVVDDRGLGLD-IRTQFVVYSSYFIVLGVIFLIGFGI 416 (433)
T ss_pred hheEEEEcccccCCC-cceeEEEEeehHHHHHHHHHHHHHH
Confidence 233333343321000 0000111444566777777776544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.28 Score=46.47 Aligned_cols=156 Identities=10% Similarity=0.140 Sum_probs=93.5
Q ss_pred hcHHHHHH-h-cCCCchhhHHHH-HHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhH
Q 018271 165 NNISQIGE-S-LGYPTSAINSLV-SLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNL 240 (358)
Q Consensus 165 ~~l~~~~~-~-~G~s~~~a~~~~-~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l 240 (358)
.++..|+. . +|++..+...-+ -...=...+.-+....++|.. +-|+++++..+...+...++. ..+...+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l------~Ykpviil~~~~~i~t~~lll~~~sv~~m 97 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL------RYKPVIILQALSYIITWLLLLFGTSVLAM 97 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHCcHHHH
Confidence 34444554 3 799887765432 223334555667788899999 555666666555455444443 5666667
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHH
Q 018271 241 YVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFL 320 (358)
Q Consensus 241 ~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~ 320 (358)
-+.-+..|++.+.- ...++++=...++++.-++.+....+.-+|.. ++.+ .|.+.-..+.. .|...++
T Consensus 98 q~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~-~s~~-lgQllvs~~~~---------sy~~L~~ 165 (412)
T PF01770_consen 98 QLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRF-ISSL-LGQLLVSFGGV---------SYFQLNY 165 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHhcCC---------CHHHHHH
Confidence 77777777776643 34455655556777777777777666655653 3433 34333322210 1888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018271 321 IMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~ 338 (358)
+..+...++.++++++..
T Consensus 166 isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 166 ISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 877777777766666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.77 Score=44.42 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=37.8
Q ss_pred hcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhcc
Q 018271 252 GCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 252 g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g 302 (358)
-..+....+.-+.+..|..-||.+.+.|+..++|+- .-..+.=++.|...
T Consensus 420 tvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGt-WP~~~vL~lVD~fT 469 (544)
T PF13000_consen 420 TVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT-WPRTFVLWLVDYFT 469 (544)
T ss_pred HHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCC-chHHHHHHHhhhcc
Confidence 344555666777888899999999999999999994 65556666777653
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.1 Score=39.50 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=63.6
Q ss_pred ccHHHhhhchhHHHHHHHHHHhhhhhh-hHH-hcHHHHHHhcCC------Cch----hhHHHHHHHHHHHHHhhhHhHHH
Q 018271 135 MNILQSVCTLNFWLLFVAMLCGMGSGL-ATV-NNISQIGESLGY------PTS----AINSLVSLWSIWNFLGRFGGGYV 202 (358)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~~~~~~~G~------s~~----~a~~~~~~~~i~~~~g~~~~G~l 202 (358)
.+..+.+|++..|...+.+........ .+. .+...+....+. +.. .......++..+.++|.+..|..
T Consensus 85 ~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~ 164 (267)
T PF07672_consen 85 PSYKSILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGYFLGPFTIGLW 164 (267)
T ss_pred chHHHHHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHHhhhceeeccc
Confidence 467888999999877666544322111 111 111112222111 111 12334445556666777777766
Q ss_pred HHHHhhhcCCchHHHHH----HHHHHHHHHHHHHH---hcC---chhHHHHHHHHHhhhhcccccHHHHHHHh--hCCcc
Q 018271 203 SDIVLHRMGWERPSFIA----ITLATMSVGHIVVA---SGF---PGNLYVGSIIVGVCYGCQWSLMPTITYEI--FGVGH 270 (358)
Q Consensus 203 sDr~~~k~~~gr~~~~~----~~~~~~~~~~~l~~---~~~---~~~l~~~~~l~g~~~g~~~~~~~~~~~e~--f~~~~ 270 (358)
+..-- .||+.+. .+.++..+..++.. ..+ ...+++..++.|++.-+.++..-..-.|. ..|+.
T Consensus 165 nkt~~-----kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~ 239 (267)
T PF07672_consen 165 NKTNY-----KRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVILNLPHEYKGYNPKK 239 (267)
T ss_pred hhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHhcChhhhcCCCcce
Confidence 53321 4444443 22233333332221 112 22355666677766655555433333332 23445
Q ss_pred hHHHHHHH
Q 018271 271 MGTIFNTI 278 (358)
Q Consensus 271 ~g~~~g~~ 278 (358)
.|.-+|+.
T Consensus 240 ig~~Fg~i 247 (267)
T PF07672_consen 240 IGIQFGLI 247 (267)
T ss_pred ehhHHHHH
Confidence 55555544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.34 Score=45.84 Aligned_cols=130 Identities=14% Similarity=0.082 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHH
Q 018271 184 LVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTIT 262 (358)
Q Consensus 184 ~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~ 262 (358)
+...-.+.+.+-.++..++.+|+.. ..| +.++..+.++++++.+ ..+.+.-+++.++.+++.|..-...-.+
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y----~~R--i~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l- 136 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPY----WIR--ILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL- 136 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccc----hHH--HHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-
Confidence 3334445667777788888888732 233 3334455666666655 3555555667777777776554444444
Q ss_pred HHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 263 YEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 263 ~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
+..|++.. .+-...+.+.++ ++|+...-.+.+ .|- + .+.++.++..+.++-.+..+++
T Consensus 137 t~~y~~~~----l~~wssGTG~aG-l~Ga~~y~~lT~-~g~-------s---~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 137 THFYGKSS----LSAWSSGTGGAG-LVGALYYLGLTT-LGL-------S---PRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred HHhcCccc----cccccCCcChhh-HHHHHHHHHHHH-hCc-------C---HHHHHHHHHHHHHHHHHHHHHh
Confidence 44677532 333334444444 355544444444 321 0 5667776666554444333333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.8 Score=41.82 Aligned_cols=142 Identities=12% Similarity=-0.015 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch-HHHHHHHHHHHHHHHHHHH-h----------cCchhHHHHHHHHH
Q 018271 181 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER-PSFIAITLATMSVGHIVVA-S----------GFPGNLYVGSIIVG 248 (358)
Q Consensus 181 a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr-~~~~~~~~~~~~~~~~l~~-~----------~~~~~l~~~~~l~g 248 (358)
..++=++..+.-++..++..++--+.++++...+ +.=..+++.++..+.+++. . .+.++++...++.+
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 3466677777777888888888888655532111 1123344444444444332 1 12355677788889
Q ss_pred hhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHH------HHhhccCCCCCccccccchHHHHHHH
Q 018271 249 VCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY------IYDNVASGEGNSCNGTHCFMLSFLIM 322 (358)
Q Consensus 249 ~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~------l~~~~g~~~~~~~~g~~~~~~~f~~~ 322 (358)
++.-...++..+++..+-|+.-.+..++...+....|.. ++..+.+. .++... ....|+.+
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~-l~g~va~~~~~~~~~~~~~~------------~~~~F~~~ 472 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQT-LGGQVAGLTAVTDPAYTAFI------------EGRVFGTI 472 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-hhceecccccccchhhhhhh------------hhhhHHHH
Confidence 988888888889999999988888899988888777774 44444442 222222 56677777
Q ss_pred HHHHHHHHHHHHH
Q 018271 323 ASVAFVGCLVAFL 335 (358)
Q Consensus 323 ~~~~~~~~~~~~~ 335 (358)
+....+..+....
T Consensus 473 g~v~i~~~~~~~~ 485 (498)
T COG3104 473 GVVAIVIGILLLL 485 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 7666655544433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.021 Score=55.22 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=51.6
Q ss_pred hHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHH
Q 018271 162 ATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV 232 (358)
Q Consensus 162 ~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~ 232 (358)
.+...++.|.+++|+++.+.+.++..--+..+++.|++|.++||+.+ +|+.++.+++....+.+++
T Consensus 29 ~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~-----~r~lllgsl~~~v~a~fll 94 (618)
T KOG3762|consen 29 SLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRK-----RRPLLLGSLLLSVTATFLL 94 (618)
T ss_pred ccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHhe
Confidence 45567788999999999999999999999999999999999999953 3344555555555544443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.5 Score=45.55 Aligned_cols=101 Identities=6% Similarity=-0.078 Sum_probs=82.6
Q ss_pred hhHHH-HHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccH
Q 018271 180 AINSL-VSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLM 258 (358)
Q Consensus 180 ~a~~~-~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~ 258 (358)
.++.. .++......+..++.+.+.|++ +.|+.++++........+.+...+...+++...+.|+|.+..|.-.
T Consensus 50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i------~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~Gq 123 (461)
T KOG3098|consen 50 YAGYYGQAIIYAFFTVSCLFAPSIVNFL------GPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQ 123 (461)
T ss_pred CccHHHHHHHHHHHHHHHHhhHHHHHHh------hHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheeccc
Confidence 34554 6677777888899999999999 7788898888888877777776777788899999999999889999
Q ss_pred HHHHHHhhCCcchHHHHHHHHHHhhhHH
Q 018271 259 PTITYEIFGVGHMGTIFNTIAIASPVGS 286 (358)
Q Consensus 259 ~~~~~e~f~~~~~g~~~g~~~~~~~ig~ 286 (358)
..+.+|....+...+..++.-.....+.
T Consensus 124 G~ylt~~st~~tie~Nisi~Wai~~~~l 151 (461)
T KOG3098|consen 124 GGYLTSNSTRETIERNISIFWAIGQSSL 151 (461)
T ss_pred ceehhhcCChhhHHHHHHHHHHHHHHHH
Confidence 9999999998888888887755555555
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.014 Score=53.55 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH--HHHHHHHHHHH-----------hcCchhHHHHHHHHHh
Q 018271 183 SLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL--ATMSVGHIVVA-----------SGFPGNLYVGSIIVGV 249 (358)
Q Consensus 183 ~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~--~~~~~~~~l~~-----------~~~~~~l~~~~~l~g~ 249 (358)
..+.+++++..+||.+.++. ++..+ .++++..... ++....++++. .++.+..++..+++|+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~--~~~~~---~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~ 260 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWP--RWPGP---SPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGF 260 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhccee--Eeccc---ccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH
Confidence 34668999999999998875 33211 1223222211 11111111221 1233445667789999
Q ss_pred hhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHH
Q 018271 250 CYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 286 (358)
Q Consensus 250 ~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~ 286 (358)
..|-..++...+.++..+++.+-.+-.+....-.+|-
T Consensus 261 TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl 297 (309)
T PF01733_consen 261 TNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGL 297 (309)
T ss_dssp ------HHHH---------------------------
T ss_pred ccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888888887776555555544444443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.11 Score=46.09 Aligned_cols=96 Identities=17% Similarity=0.047 Sum_probs=57.9
Q ss_pred hcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 018271 165 NNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGS 244 (358)
Q Consensus 165 ~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 244 (358)
.++-++.+.+|+...+.+.+.....-..++...+.|-++|+-|||+. .....+.+++.+ +.=..+++..+++++
T Consensus 58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra---cvtycitYiLsC---iTKhSpqYkVLmVGR 131 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA---CVTYCITYILSC---ITKHSPQYKVLMVGR 131 (454)
T ss_pred ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccc---eeeehHHHHHHH---HhhcCCceEEEeehh
Confidence 34445566778888887776555444455555666889999976632 222333333322 211245667788999
Q ss_pred HHHHhhhhcccccHHH-HHHHhh
Q 018271 245 IIVGVCYGCQWSLMPT-ITYEIF 266 (358)
Q Consensus 245 ~l~g~~~g~~~~~~~~-~~~e~f 266 (358)
++-|+.....++..-+ ++.|.-
T Consensus 132 ~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 132 VLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhh
Confidence 9998888766655443 456654
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=5.2 Score=37.90 Aligned_cols=122 Identities=6% Similarity=-0.020 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhc-CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 223 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~ 223 (358)
.++..++........+..+++..+++.+++ +.+. +..+...+.+.+.+-.++.-.+--+...|. .++......+.
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~--~~~~~~~l~~~ 94 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL--RTRVGYLLSLI 94 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 444444444444445567777888887776 4444 444555555555555555555555554431 22221211111
Q ss_pred -HHHHHHHHHHh--cC--c----hhHHHHHHHHHhhhhcccccHHHHHHHhhCCcch
Q 018271 224 -TMSVGHIVVAS--GF--P----GNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHM 271 (358)
Q Consensus 224 -~~~~~~~l~~~--~~--~----~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~ 271 (358)
+..+..+.+.. .. . ....+...+.+++.+..++..+...++ +|++-.
T Consensus 95 ~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt 150 (406)
T KOG1479|consen 95 AILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT 150 (406)
T ss_pred HHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH
Confidence 11111111111 11 1 123345566777777777777777664 565543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.5 Score=41.11 Aligned_cols=135 Identities=10% Similarity=0.078 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHH-----HHhhhcCCchHHHHH
Q 018271 145 NFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSD-----IVLHRMGWERPSFIA 219 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsD-----r~~~k~~~gr~~~~~ 219 (358)
.+..+.+.+.+ .+.-++....+|.+++..|.|-++.+.+...+.=. --.++++.+.| |+||||. .++
T Consensus 32 ~illLl~LYll-QGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~Grrks-----Wvv 103 (510)
T KOG3574|consen 32 SILLLLFLYLL-QGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKS-----WVV 103 (510)
T ss_pred hHHHHHHHHHH-cCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccc-----eee
Confidence 44444444544 44446677799999998888866655443333222 23688899999 7765443 344
Q ss_pred HHHHHHHHHHHHHH-hcC---------chh--HHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHH
Q 018271 220 ITLATMSVGHIVVA-SGF---------PGN--LYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSY 287 (358)
Q Consensus 220 ~~~~~~~~~~~l~~-~~~---------~~~--l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~ 287 (358)
-+..+....+.+++ ..+ +.. +....++.-|..+.--...-...-.+..+++.|-+......+..+|-+
T Consensus 104 p~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf 183 (510)
T KOG3574|consen 104 PCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF 183 (510)
T ss_pred ehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence 44444444444443 111 111 111223333322222222233344455556666665555555555553
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=7.7 Score=36.01 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhhhhhhHHhcHHHHHHhc-CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHh-hhcCCchHHHH-HHHHH
Q 018271 147 WLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVL-HRMGWERPSFI-AITLA 223 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~-~k~~~gr~~~~-~~~~~ 223 (358)
|++.++.+++..++..+...+.++...+ |-+..+.+++++.+.....+|+.+.-++.|--- .|.. .--.++ +++-+
T Consensus 10 alL~laVf~~aa~GlvyElal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv-~vElllgligg~ 88 (508)
T COG4262 10 ALLLLAVFVCAACGLVYELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFV-DVELLLGLIGGV 88 (508)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHH-HHHHHHHHhccc
Confidence 4455555555556666677777777765 666677788888888888888887777665421 0000 111111 11111
Q ss_pred HHHHHHHHHHh---cCchhHHHHHHHHHhhhhcccccHHHHHHH
Q 018271 224 TMSVGHIVVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYE 264 (358)
Q Consensus 224 ~~~~~~~l~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e 264 (358)
-..+..+.++. .+.+.++....++|.-.|.-.++.+.+...
T Consensus 89 Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 89 SAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 11112223332 233456777788888888777776666554
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.06 E-value=13 Score=36.46 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=34.4
Q ss_pred cHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHh
Q 018271 257 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 299 (358)
Q Consensus 257 ~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~ 299 (358)
+.+.++.|.+..++-.+.+++.++++++|.. +++.+..++.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli-~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLI-FSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4678889999999999999999999999984 66666666555
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.61 E-value=3.9 Score=38.73 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=61.9
Q ss_pred HhcHHHHHHhc---CC-CchhhHHHHHH-HHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHH-HH----
Q 018271 164 VNNISQIGESL---GY-PTSAINSLVSL-WSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIV-VA---- 233 (358)
Q Consensus 164 ~~~l~~~~~~~---G~-s~~~a~~~~~~-~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l-~~---- 233 (358)
.+..|-+..+. +. +.--.-....+ +++...+|++...+.-+.= +|...+....=+..+.++. +-
T Consensus 263 LsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~------~r~l~i~v~lR~lfiPlF~~cn~~~~ 336 (406)
T KOG1479|consen 263 LSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD------PRKLTIPVLLRLLFIPLFLLCNYPPL 336 (406)
T ss_pred eEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC------CceehHHHHHHHHHHHHHHHhccCCC
Confidence 34556555432 22 22333444555 8899999988877775542 2333333322222222222 11
Q ss_pred ---hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHH
Q 018271 234 ---SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI 278 (358)
Q Consensus 234 ---~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~ 278 (358)
..+.+.+++...++|+..|=..++...+.++..+++.+-.+-.+.
T Consensus 337 ~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m 384 (406)
T KOG1479|consen 337 PVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLM 384 (406)
T ss_pred CceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHH
Confidence 244566778888999999877777778888887766543333333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.60 E-value=29 Score=33.80 Aligned_cols=42 Identities=10% Similarity=0.179 Sum_probs=32.2
Q ss_pred cHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHh
Q 018271 257 LMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYD 299 (358)
Q Consensus 257 ~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~ 299 (358)
+.+..+.|++..++-.+-+++.+++.+++.. ++..+.+++..
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~ll-lsg~~~~~~~k 209 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLL-LSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 4567778888888889999999999999885 55555555544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.31 E-value=5.2 Score=37.65 Aligned_cols=165 Identities=10% Similarity=-0.053 Sum_probs=83.1
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 216 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~ 216 (358)
.+++++-+....+...-...=.++.+-....+.-+.|.|++..+.++......-.++++....|..+.....-...-|..
T Consensus 258 l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~ 337 (510)
T KOG3574|consen 258 LRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAV 337 (510)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhh
Confidence 44455544443333333333334444455556667788999888776654444444444444444332100000001111
Q ss_pred HHHHHHHHHHHHHHHHH--hcC-----chhH-HHHH---HHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhH
Q 018271 217 FIAITLATMSVGHIVVA--SGF-----PGNL-YVGS---IIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVG 285 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~--~~~-----~~~l-~~~~---~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig 285 (358)
.+-+........++... ... +... ++.+ .+.+...-..+...++..+.+.++..-||.+.+.|+..++|
T Consensus 338 ~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLG 417 (510)
T KOG3574|consen 338 PYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLG 417 (510)
T ss_pred hHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhc
Confidence 11111111111111111 111 1111 1111 23333333344455677788889999999999999999999
Q ss_pred HHHHhHHHHHHHHhhcc
Q 018271 286 SYVCSVRIIGYIYDNVA 302 (358)
Q Consensus 286 ~~i~gp~i~g~l~~~~g 302 (358)
+- .-..+.+++.|...
T Consensus 418 g~-wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 418 GN-WPGTVALWLADGLT 433 (510)
T ss_pred CC-cHHHHHHHhcccCc
Confidence 85 66678888888765
|
|
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=80.73 E-value=12 Score=37.01 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=34.4
Q ss_pred HHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCC-CchhhHHHHHHHHHHHHHhhhHhHHHHHHHhh
Q 018271 138 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGY-PTSAINSLVSLWSIWNFLGRFGGGYVSDIVLH 208 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~-s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~ 208 (358)
.+++|.|+- ...++.+++.+...........+....|+ ++..-+.+.+...+..+++.+++|+.+-|.-+
T Consensus 252 gDVFR~P~~-~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk 322 (521)
T PF02990_consen 252 GDVFRPPKH-PMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYK 322 (521)
T ss_pred HHHhcCcCC-chHHHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456666652 34444455555444444444444444443 33333445545455555555666666665543
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.81 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.72 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.71 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.71 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.68 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.65 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.64 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.59 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.59 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.57 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.46 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.17 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.07 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-18 Score=161.68 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=148.7
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.++++.+|.+.+..++.....+.+..++|.+.++ +|++..+++++.+...++..+++++.|+++||+.+ +|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~----~~~ 320 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR----GNR 320 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----TCH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCc
Confidence 4677889999999988888888888889999999987 69999999999999999999999999999999811 223
Q ss_pred HHHHHHHHHHH-HHHHHHHh-c--CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhh-HHHHHh
Q 018271 216 SFIAITLATMS-VGHIVVAS-G--FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSYVCS 290 (358)
Q Consensus 216 ~~~~~~~~~~~-~~~~l~~~-~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~i-g~~i~g 290 (358)
..+.++..+.. ++.+++.. . +...+.+..++.|++.+...+....++.|.+|++.||+++|+.+....+ |.. ++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~-~~ 399 (451)
T 1pw4_A 321 GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV-AA 399 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH-HH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH-HH
Confidence 33444444333 44444442 2 3444566677888888887888889999999999999999999999999 984 89
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
|.+.|.+.|..| |+..|++.+++.+++.++.+++.+
T Consensus 400 ~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 400 SAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887 999999999988888766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=144.91 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=140.6
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHH-HHhc-CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCc
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQI-GESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 213 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~g 213 (358)
+.++.++++.+|...+..++.......+..++|.+ .++. |++..+++.+.+...++..+++++.|+++||+ +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~------~ 323 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF------A 323 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------C
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------c
Confidence 46778899999999888888888888888999999 8876 99999999999999999999999999999999 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHH
Q 018271 214 RPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 214 r~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
|+..+..+.++.+++.+++...+.....+..++.|++.+..++...++..|.+|++ ++++.++.. .+.+|+. ++|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~-~~~~~ 400 (438)
T 3o7q_A 324 PHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG-IVTPV 400 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH-HHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHH-HHHHH
Confidence 66777777777777666655333333445557888888888888889989999966 888888877 5668884 89999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 329 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~ 329 (358)
.|.+.|..|+ |+..|++.+++.++.
T Consensus 401 ~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 401 MGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred HHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 9999999886 778887765544443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-16 Score=148.04 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=150.9
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHh------cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHH-HhhhcCCchHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGES------LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERPS 216 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr-~~~k~~~gr~~ 216 (358)
+.+|.+++..++.....+.+..+++.+.++ +|++..+.+++.+...++..++.++.|+++|| + |||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~------g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII------GARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------CHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cchH
Confidence 456777777777777788888888887765 89999999999999999999999999999999 8 7778
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcc--hHHHHHHHHHHhhhHHHHHhHHH
Q 018271 217 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH--MGTIFNTIAIASPVGSYVCSVRI 293 (358)
Q Consensus 217 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~--~g~~~g~~~~~~~ig~~i~gp~i 293 (358)
.+..+.++.+++.+++. .++.+.+++.+++.|++.+...+...++++|.+|+++ |++++++.+.+..+|. +++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA-FIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH-HHHHHH
Confidence 88888888888888777 5677788889999999999999999999999999988 7888888999999999 489999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 337 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~ 337 (358)
+|.+.+..+ |++.|++.++..+++.++.++..
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999887 99999998887777766554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-17 Score=155.55 Aligned_cols=185 Identities=12% Similarity=0.058 Sum_probs=127.4
Q ss_pred HHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHH
Q 018271 152 AMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIV 231 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l 231 (358)
..+......+.+..+.+.+.+..+.+............+...++.++.+++.||+ |||..+..+....+++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~------Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 285 SIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF------GRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh------cCcchhccchHHHHHHHHH
Confidence 3334444455667778888888888888877778888899999999999999999 6666666666666655554
Q ss_pred HH---h-cCchh-HHHHHHHHHhhhh-cccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCC
Q 018271 232 VA---S-GFPGN-LYVGSIIVGVCYG-CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGE 305 (358)
Q Consensus 232 ~~---~-~~~~~-l~~~~~l~g~~~g-~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~ 305 (358)
+. . ..... ..+..++...+.+ +..++.+.+.+|+||++.|+++.|+.+..+.++++ +++.+.+.+.+....
T Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~-i~~~~~p~l~~~~~~-- 435 (491)
T 4gc0_A 359 LGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY-FVSWTFPMMDKNSWL-- 435 (491)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH-HHHTHHHHHCHHHHH--
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--
Confidence 43 1 22222 2222222222222 33456778999999999999999999999999985 677777665443210
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018271 306 GNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVL 349 (358)
Q Consensus 306 ~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (358)
....++...|++.+++++++++..+++.+|||++..++.+
T Consensus 436 ----~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 436 ----VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp ----HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred ----HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 0000145678888999999988888888999887665543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-16 Score=147.49 Aligned_cols=178 Identities=15% Similarity=0.081 Sum_probs=149.0
Q ss_pred chhHHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 143 TLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
.+.++.+++..++.......+...+|.+.+++ .+..+.+++.+...++..++.+++|+++||+ |||+.+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc------CchHHHHHHH
Confidence 34556666666666666666777889999999 9999999999999999999999999999999 7777888888
Q ss_pred HHHHHHHHHHHh-----cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 018271 223 ATMSVGHIVVAS-----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 297 (358)
Q Consensus 223 ~~~~~~~~l~~~-----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l 297 (358)
++.+++.+++.. .+.+.+++.+++.|++.+...+...++++|.+|+++|++++|+.+.+..+|. +++|.+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888887776643 4567788889999999999999999999999999999999999999999999 4899999998
Q ss_pred HhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 298 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 339 (358)
Q Consensus 298 ~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 339 (358)
.+..++ |++.|++.+++.++..++.++..++
T Consensus 179 ~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 179 MAWFND-----------WHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHTCC-----------STTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhcc-----------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 887764 9999999988887776665555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=141.21 Aligned_cols=182 Identities=12% Similarity=0.056 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHH
Q 018271 146 FWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATM 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~ 225 (358)
++.+.+.+++...........+|.+.+++|.+..+.+++.+...++..++.+++|+++||+ |||+.+.++.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~------g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL------SYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------cchHHHHHHHHHH
Confidence 3444445555555555667778899999999999999999999999999999999999999 7778888888888
Q ss_pred HHHHHHH---H-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhc
Q 018271 226 SVGHIVV---A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNV 301 (358)
Q Consensus 226 ~~~~~l~---~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~ 301 (358)
+++.++. . .++.+.+++.+++.|++.+...+...++++|.+|+++|+.+.|+.+.+..+|.. ++|.+++.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHHHTS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 8888776 5 467778888999999999999999999999999999999999999999999994 8999999988333
Q ss_pred cCCCCC--------------ccccccchHHHHHHHHHHHHHHHHHHH
Q 018271 302 ASGEGN--------------SCNGTHCFMLSFLIMASVAFVGCLVAF 334 (358)
Q Consensus 302 g~~~~~--------------~~~g~~~~~~~f~~~~~~~~~~~~~~~ 334 (358)
....+. ......+|++.|++.+++.++..++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 210000 000001178888877776666654443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=143.05 Aligned_cols=183 Identities=12% Similarity=0.070 Sum_probs=133.9
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc-C---CCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCC
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-G---YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 212 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-G---~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~ 212 (358)
.++.++++++|.+++..++.......+..++|.+.++. + .+....+...++..++..++.++.|+++||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------ 286 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI------ 286 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 45678889888777665555545555666788777653 3 2234456677777888899999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHH-HHHhhhHHHHHh
Q 018271 213 ERPSFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCS 290 (358)
Q Consensus 213 gr~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~-~~~~~ig~~i~g 290 (358)
+||+.+..+..+.++..+++. ..+...+++..++.+++.+........+++|.+|++.||+++|+. +....+|+. ++
T Consensus 287 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~g 365 (417)
T 2cfq_A 287 GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FM 365 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-Hh
Confidence 666667666666666655554 334444555555666666555566678999999999999999995 888889984 89
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFI 338 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~ 338 (358)
|.+.|.+.|..| |...|.+.++++++++++.+++.+
T Consensus 366 p~l~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 366 SVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp THHHHTHHHHSH------------HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999877 889999988888887766544333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=141.72 Aligned_cols=167 Identities=13% Similarity=0.156 Sum_probs=139.0
Q ss_pred HHHHHHHHhhhhhhhHHhcHHHHHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHH
Q 018271 148 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSV 227 (358)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~ 227 (358)
.+++..++.......+...+|.+.+++|.+..+.+++.+...++..++.++.|+++||+| ||+.+..+..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG------RRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CchhHHHHHHHHHH
Confidence 345555555556666777888888999999999999999999999999999999999995 44446667677777
Q ss_pred HHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCC
Q 018271 228 GHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG 306 (358)
Q Consensus 228 ~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~ 306 (358)
+.++.. .++.+.+++.+++.|++.+...+...+++.|.+|+++|++.+++.+.+..+|. +++|.+++++.+..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-LLAPLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH-HHHHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcc----
Confidence 666665 45667788889999999998899999999999999999999999999999999 489999999988777
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHH
Q 018271 307 NSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 307 ~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
|+..|++.+++.++..+..
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 153 --------WRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHCCC
T ss_pred --------HHHHHHHHHHHHHHHHHHH
Confidence 9999998888777666533
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-14 Score=135.44 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 222 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~ 222 (358)
...+.+++..++..........++|.+.++ .+.+....+.+.+...++..++.++.|+++||++||+. .+...+..+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHH
Confidence 344555555555555556667778888776 47766677888888899999999999999999977653 2233344555
Q ss_pred HHHHHHHHHHHh----------cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHH
Q 018271 223 ATMSVGHIVVAS----------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 292 (358)
Q Consensus 223 ~~~~~~~~l~~~----------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~ 292 (358)
.+.+++.+++.. .+...+.+..++.|++.+...+..+.++.|.+|++.||++.|+.+....+|.. ++|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-i~~~ 440 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA-LNAQ 440 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 555555544331 13445666778888888888888899999999999999999999999999995 7898
Q ss_pred HHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 293 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 293 i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
+.|.+.+. + +...|++.+++++++.++.+++.++.++
T Consensus 441 ~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 441 LVTLYNAK-S------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HGGGGGGS-S------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHhcc-c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887664 3 6678888888888777666555544443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=139.91 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcC------CCchhhHHHHHHHHHHHHHhhhHhHHHHHHH-hhhcCCchH
Q 018271 144 LNFWLLFVAMLCGMGSGLATVNNISQIGE-SLG------YPTSAINSLVSLWSIWNFLGRFGGGYVSDIV-LHRMGWERP 215 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G------~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~-~~k~~~gr~ 215 (358)
+.+|.+++..++.....+....+++.+++ ++| ++..+++++.+.+.++..++.++.|+++||+ | ||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------KY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------SH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ch
Confidence 45677777777777777888888887765 578 9999999999999999999999999999998 5 34
Q ss_pred HHHHHHHHHHHHHHHHHH-hc-CchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHH---HHHHhhhHHHHHh
Q 018271 216 SFIAITLATMSVGHIVVA-SG-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNT---IAIASPVGSYVCS 290 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~---~~~~~~ig~~i~g 290 (358)
+.+.++.++.+++.+++. .. +.+.+++.+++.|++.+...+...++++|.+|+++|++..+. .+.+..+|.. ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-FA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-HH
Confidence 556667777777776666 45 667788889999999999999999999999999999766555 8888999984 89
Q ss_pred HHHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 018271 291 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 333 (358)
Q Consensus 291 p~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~ 333 (358)
|.++|.+.+..+ |++.|++.+++.+++.++.
T Consensus 165 ~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 165 SLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHH
Confidence 999999998777 9999999888777665543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-14 Score=129.58 Aligned_cols=165 Identities=14% Similarity=0.063 Sum_probs=126.8
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 137 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.++++.+|...+..++.......+..++|.+.++ +|++..+++.+.+...++..+++++.++++||+ +++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~------~~~ 265 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF------STL 265 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH------HHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 3566788899988888888877778888888888776 799999999999999999999999999999998 442
Q ss_pred HHHHHHHHH-HHHHHH--HHHh---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHH
Q 018271 216 SFIAITLAT-MSVGHI--VVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVC 289 (358)
Q Consensus 216 ~~~~~~~~~-~~~~~~--l~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~ 289 (358)
.. .+... ...+.. .... .+.+.+++..++.|++.+..++....+..|.+| ++||++.|+.+....+|+. +
T Consensus 266 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~ 341 (375)
T 2gfp_A 266 MW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-V 341 (375)
T ss_dssp HH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-C
T ss_pred HH--HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-H
Confidence 22 22222 111111 1111 233445566778889988888999999999998 8999999999999999995 8
Q ss_pred hHHHHHHHHhhccCCCCCccccccchHHHHHHHH
Q 018271 290 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMA 323 (358)
Q Consensus 290 gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~ 323 (358)
+|.+.|.+.+..+ |...+++.+
T Consensus 342 ~~~~~g~l~~~~~------------~~~~~~~~~ 363 (375)
T 2gfp_A 342 LASLSAMLPQTGQ------------GSLGLLMTL 363 (375)
T ss_dssp CSTTCTHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCc------------ccHHHHHHH
Confidence 9999999988766 777776543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.4e-12 Score=119.96 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=115.7
Q ss_pred HhcHHHHHHhcCC----C----chhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH--
Q 018271 164 VNNISQIGESLGY----P----TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-- 233 (358)
Q Consensus 164 ~~~l~~~~~~~G~----s----~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~-- 233 (358)
...+|.+.++++. + ....+++++.+.++..+|.+++|+++||+ |||+.+.++.+++.++.++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~------GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF------GRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655432 2 23456788889999999999999999999 888889888888888877665
Q ss_pred -----------------hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHH
Q 018271 234 -----------------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 296 (358)
Q Consensus 234 -----------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~ 296 (358)
.++...+++.+++.|++.|+..+..+.+++|..|++.|+...++.+.+..+|.. .++.+...
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~ 184 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYF 184 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchh
Confidence 234566889999999999999999999999999999999999999999998884 66655555
Q ss_pred HHhhccCCCCCccccccchHHHHHHHHHHHHHHH
Q 018271 297 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 330 (358)
Q Consensus 297 l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~ 330 (358)
+....+. ...+...|+..+.+.....++..
T Consensus 185 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 185 IARSGDA----SWLNTDGWRYMFASECIPALLFL 214 (491)
T ss_dssp HHTTSCT----TTTTTTHHHHHHHTTHHHHHHHH
T ss_pred hcccccc----ccccchhhHHHhhhhhhhhhhhh
Confidence 5443321 11123346666665555444443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-11 Score=116.86 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=111.2
Q ss_pred hhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 140 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
.+|++.+|.+....++...........+|.++++ +|++..+.+++.+...++..++++++|+++||+| ||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~G------rr~~l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG------LRKYL 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTST------TCCHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------chHHH
Confidence 5788999988887777766666777889988875 7999999999999999999999999999999995 44445
Q ss_pred HHHHHHHHHH---HHHHH-hcCc-hhHHHHHHHHHhhhhcccccHHHHHHHhhCC--cchHHHHHHHHHHhhhHHHHHhH
Q 018271 219 AITLATMSVG---HIVVA-SGFP-GNLYVGSIIVGVCYGCQWSLMPTITYEIFGV--GHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 219 ~~~~~~~~~~---~~l~~-~~~~-~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~--~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
.++..+..+. ..... .... .......++.+++.+..++.......+..+. ++++..+|.....+.+|.. ++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHH
Confidence 5444433321 11111 0000 0112233333443333332222333333322 3557778888888888884 799
Q ss_pred HHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHH
Q 018271 292 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 329 (358)
Q Consensus 292 ~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~ 329 (358)
.++|++.+. + |+..|++.++..++.
T Consensus 156 ~l~~~l~~~-~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 156 SIVGIMFTI-N------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHH-C------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHh-c------------hhHHHHHHHHHHHHH
Confidence 999999873 4 888888766654433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-10 Score=108.95 Aligned_cols=163 Identities=11% Similarity=-0.011 Sum_probs=97.3
Q ss_pred HHHHHHhcCCCc-hhhHHHHHHHHHHHHHhhhHhHHHH----HHHhhhcCCchHHHHHHHHHHHHHHHHHHHh-------
Q 018271 167 ISQIGESLGYPT-SAINSLVSLWSIWNFLGRFGGGYVS----DIVLHRMGWERPSFIAITLATMSVGHIVVAS------- 234 (358)
Q Consensus 167 l~~~~~~~G~s~-~~a~~~~~~~~i~~~~g~~~~G~ls----Dr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~------- 234 (358)
++.+..+.+.+. ...+.+.+...++..++.++.+++. ||.++|. +++..+.++.++.+++.+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (524)
T 2xut_A 322 WILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL--TALRKMGAGIAITGLSWIVVGTIQLMMDG 399 (524)
T ss_dssp HHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC--------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTT
T ss_pred hHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444443322 1345555555555666666666653 3332221 2234455566666666555442
Q ss_pred ---cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCcccc
Q 018271 235 ---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG 311 (358)
Q Consensus 235 ---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g 311 (358)
.+...+.+..++.|++.+...+....++.|.+|++.||+++|+.+....+|+. ++|.+.|.+.+..+.
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~~~g~~~~~~~~-------- 470 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL-WVLLANVSVKSPTVT-------- 470 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH-HHHHHHHHTTSCHHH--------
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH-HHHHHHHHhcccccc--------
Confidence 13344566778888888888888888999999999999999999999999995 899999998874310
Q ss_pred ccch---------HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 312 THCF---------MLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 312 ~~~~---------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
+| +..|++.++++++++++.+++.++.++
T Consensus 471 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
T 2xut_A 471 --EQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQM 508 (524)
T ss_dssp --HHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred --cccccccccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 02 334777777777777665555444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.82 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.66 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.65 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.37 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.7e-18 Score=160.43 Aligned_cols=191 Identities=15% Similarity=0.167 Sum_probs=147.2
Q ss_pred cHHHhhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHh-cCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCch
Q 018271 136 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWER 214 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr 214 (358)
..+..++++.+|.+....++.....+.+..+.|.+.++ .|++..+.+...++..+++.++.++.|+++||++++ .+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~ 317 (447)
T d1pw4a_ 241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG---NR 317 (447)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---CH
T ss_pred HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccc---cc
Confidence 45667888999999888888888888889999988875 599999999999999999999999999999999655 23
Q ss_pred HHHHHHHHHHHHHHHHHHH-h--cCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhH
Q 018271 215 PSFIAITLATMSVGHIVVA-S--GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~-~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
.........+..++..++. . .+.....+..++.|++.++..+....+..|.+|++.||++.|+.+..+.+++.+.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~ 397 (447)
T d1pw4a_ 318 GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 397 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333322 1 233445566677788887777888899999999999999999998888876546789
Q ss_pred HHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018271 292 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTR 341 (358)
Q Consensus 292 ~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 341 (358)
++.|++.|..| |+..|++.+++++++.++..++..+++
T Consensus 398 ~~~g~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (447)
T d1pw4a_ 398 AIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEK 435 (447)
T ss_dssp HHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC------------hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999988 999999888888888776655544433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=2.8e-16 Score=146.52 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=128.2
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHh-----cCchhHHHHH
Q 018271 170 IGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVAS-----GFPGNLYVGS 244 (358)
Q Consensus 170 ~~~~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~~~~~~~~~~~~~l~~~-----~~~~~l~~~~ 244 (358)
+.++.|+|.++.+++.+.+.++..++.+++|+++||+ |||+.+.++.++.+++.++.+. .+...+++.+
T Consensus 50 ~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~------g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (447)
T d1pw4a_ 50 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 123 (447)
T ss_dssp HTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence 4467899999999999999999999999999999999 7778888888887777766541 3566788889
Q ss_pred HHHHhhhhcccccHHHHHHHhhCCcchHHHHHHHHHHhhhHHHHHhHHHHHHHHhhccCCCCCccccccchHHHHHHHHH
Q 018271 245 IIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMAS 324 (358)
Q Consensus 245 ~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~~~~~~ig~~i~gp~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~ 324 (358)
++.|++.+..++....++.|.+|+++|++++|+.+.+..+|.. ++|.+.+.+.+..++ |++.|++.+.
T Consensus 124 ~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~~~~~~~~~~~~-----------w~~~~~~~~~ 191 (447)
T d1pw4a_ 124 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLLGMAWFND-----------WHAALYMPAF 191 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHTCC-----------STTCTHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhh-hhhhhhhhHhhhhhc-----------ccccchhhhh
Confidence 9999999998899999999999999999999999999999994 789888888877655 9999998888
Q ss_pred HHHHHHHHHHHHH
Q 018271 325 VAFVGCLVAFLLF 337 (358)
Q Consensus 325 ~~~~~~~~~~~~~ 337 (358)
+.++..++.+.+.
T Consensus 192 ~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 192 CAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhc
Confidence 8777776655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=4.2e-15 Score=135.71 Aligned_cols=184 Identities=11% Similarity=0.053 Sum_probs=135.9
Q ss_pred hhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHHhc----CCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchH
Q 018271 140 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL----GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERP 215 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~ 215 (358)
.++.+..+......++............+.+.... +.+....+...+...++..++..+.+++.||+ +++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~------~~~ 289 (417)
T d1pv7a_ 216 LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI------GGK 289 (417)
T ss_dssp HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH------CHH
T ss_pred ccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccc------ccc
Confidence 33444444444333333333333333333333322 34445566677888889999999999999999 777
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHhhhhcccccHHHHHHHhhCCcchHHHHHHH-HHHhhhHHHHHhHHH
Q 018271 216 SFIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCSVRI 293 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~~~~g~~~g~~-~~~~~ig~~i~gp~i 293 (358)
..+.++..+.++..+++. .++.+.+++..++.|++.+..++....++.|.+|++.||+.+|+. +....+|.. ++|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~~~~ 368 (417)
T d1pv7a_ 290 NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FMSVL 368 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH-HHHHH
T ss_pred cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 778888887877777776 556667777888899999988899999999999999999999986 566778884 79999
Q ss_pred HHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018271 294 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 342 (358)
Q Consensus 294 ~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 342 (358)
.|++.|+.| |+..|++.+++++++.++..++.+++++
T Consensus 369 ~G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 369 AGNMYESIG------------FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHC------------HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHC------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999998 9999999999888888777666655544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=2.7e-12 Score=116.60 Aligned_cols=177 Identities=16% Similarity=0.126 Sum_probs=114.3
Q ss_pred hhhchhHHHHHHHHHHhhhhhhhHHhcHHHHHH-hcCCCchhhHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCchHHHH
Q 018271 140 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 218 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~s~~~a~~~~~~~~i~~~~g~~~~G~lsDr~~~k~~~gr~~~~ 218 (358)
.+||+.+|.+.+.+++.......+...+|.+++ +.|.|.++.+++.++..++..++.+++|+++||+ |||+.+
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~------grr~~l 76 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL------GLRKYL 76 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH------TTCTHH
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchHHH
Confidence 478999999999888887777777778887765 5799999999999999999999999999999999 555555
Q ss_pred HHHHHHHHHHHHHHH-hcCc----hhHHHHHHHHHhhhhcccccHHHHHHHhhCC--cchHHHHHHHHHHhhhHHHHHhH
Q 018271 219 AITLATMSVGHIVVA-SGFP----GNLYVGSIIVGVCYGCQWSLMPTITYEIFGV--GHMGTIFNTIAIASPVGSYVCSV 291 (358)
Q Consensus 219 ~~~~~~~~~~~~l~~-~~~~----~~l~~~~~l~g~~~g~~~~~~~~~~~e~f~~--~~~g~~~g~~~~~~~ig~~i~gp 291 (358)
.++.....++..++. .... ....+...+.+.+.+...........+...+ +.+....+........+. +++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (417)
T d1pv7a_ 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW-ALGA 155 (417)
T ss_dssp HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccc-cccc
Confidence 555555555444443 2211 1223334444444444443333333332222 233445556666666676 4788
Q ss_pred HHHHHHHhhccCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 018271 292 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 336 (358)
Q Consensus 292 ~i~g~l~~~~g~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 336 (358)
.+++.+.+.. ++..+........+..++.++.
T Consensus 156 ~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 187 (417)
T d1pv7a_ 156 SIVGIMFTIN-------------NQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp HHHHHHHHHC-------------HHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccccccccc-------------ccccccchhhHHHHHHHHHHHH
Confidence 8888887754 4555555555444444443333
|