Citrus Sinensis ID: 018273

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccHHHHHHHHccccccEEEEccccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHccccEEEEEEEccccccEEEEEccccccEEEEEEEcEEEcccccccccccccccEEEEccccccHHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEEEEEEccccccccccccccccHHHHHcccccccEEEEEEcccEEEEEEEEccccccccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccHHccccccccccccccHHHHccccHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEEEccccccccccccccEEEEccccccHHHHHHHHHHHHccccccccccEEEEEEccccEEEEEEEEEEEEccccccccccccccccccccccccccEEEEEEEccccEEEEEHEEEccccccccccEEEEEccccccHHHHHcc
Coil and Loop (DISEMBL)
mgakrkksegeellnegekendknneNISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALElgeepparmtprtientrepdetvcrpdddelfagndadefssilkqgcapkilittcrfnsnrgpAFISELLsvipnshyykrgtYDLKKIIEYAKKKDFTSIIVVHTnrrepdalliiglpdgptahfKLSKLVLRKDiknhgnptghipeLVLNNFATRLGHRVGRLIqslfpqspefrgrrvvtfhnqrdfiffRHHRYIfetkeskgsdangkkakdaksekTSQQKVITRLQECGPRFTLKLVSLQhgtfdtkggefewvhkpemdtsrrrffl
Flexible Loop (DISEMBL)
mgakrkksegeellnegekendknneniskkmkkeilpsmiknkekrsavhaklkhqkkvekrkklkardaaekralelgeepparmtprtientrepdetvcrPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLiiglpdgptAHFKLSKLVLRKDIKNhgnptghipeLVLNNFATRLGHRVGRLIQslfpqspefrgrRVVTFHNQRDFIFFRHHRYIFetkeskgsdangkkakdaksektsqqKVITRLQECGPRFTLKLVSLQHgtfdtkggefewvhkpemdtsrrrffl
Low Complexity Region (SEG)
MGAKRkksegeellnegekendknneniskkMKKEILPSMIKNKEKRSAVHAklkhqkkvekrkklkARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Disordered region (IsUnstruct)
********************************************************************************************************************DEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFE**************************VITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVH*************
Disordered Region (DISOPRED)
************************************************A******************************************************RPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETK***************************RLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDT**RRFFL
Disordered Region (DISEMBL)
***********************NNENISKKMKKEILPSMIKNKE****************************KRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETK************************VITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Disordered Region (DISPRO)
**********************************EILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDA*****************************T*CRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETK**********************QKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q5R631	349	Ribosome production facto	yes	no	0.818	0.839	0.481	5e-75
Q9H9Y2	349	Ribosome production facto	yes	no	0.818	0.839	0.478	9e-75
Q7TND5	349	Ribosome production facto	yes	no	0.818	0.839	0.472	2e-74
Q8AVP1	343	Ribosome production facto	N/A	no	0.818	0.854	0.472	5e-73
Q5RJS9	345	Ribosome production facto	yes	no	0.784	0.814	0.462	5e-70
Q6IQU6	330	Ribosome production facto	yes	no	0.818	0.887	0.447	3e-68
P54073	384	Brix domain-containing pr	yes	no	0.843	0.786	0.429	6e-66
Q9VKB4	394	Probable ribosome product	yes	no	0.801	0.728	0.440	5e-58
P38805	295	Ribosome production facto	yes	no	0.784	0.952	0.401	4e-57
O14180	306	Brix domain-containing pr	yes	no	0.824	0.964	0.411	1e-54

>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1

 Score =  281 bits (719), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 155/322 (48%), Positives = 206/322 (63%), Gaps = 29/322 (9%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNKE+R  +  + K Q   ++++KL A+   +K    LG++ P +  P+TI+N R  
Sbjct: 55  SEIKNKERRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291

Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
            HRYIF +++  G                        +QE GPRFTLKL SLQ GTFD+K
Sbjct: 292 FHRYIFRSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 327

Query: 338 GGEFEWVHKP-EMDTSRRRFFL 358
            GE+EWVHKP EMDTSRR+F L
Sbjct: 328 YGEYEWVHKPREMDTSRRKFHL 349

May be required for ribosome biogenesis.
Pongo abelii (taxid: 9601)

>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2

 Score =  280 bits (717), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 154/322 (47%), Positives = 206/322 (63%), Gaps = 29/322 (9%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNK++R  +  + K Q   ++++KL A+   +K    LG++ P +  P+TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291

Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
            HRYIF +++  G                        +QE GPRFTLKL SLQ GTFD+K
Sbjct: 292 FHRYIFRSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 327

Query: 338 GGEFEWVHKP-EMDTSRRRFFL 358
            GE+EWVHKP EMDTSRR+F L
Sbjct: 328 YGEYEWVHKPREMDTSRRKFHL 349

May be required for ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2

 Score =  279 bits (714), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 152/322 (47%), Positives = 207/322 (64%), Gaps = 29/322 (9%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNK++R  +  + K Q   ++++KL A+   +K    LG++ P +  P+TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIP+SH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291

Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
            HRYIF++++  G                        +QE GPRFTLKL SLQ GTFD+K
Sbjct: 292 FHRYIFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 327

Query: 338 GGEFEWVHKP-EMDTSRRRFFL 358
            GE+EWVHKP EMDTSRR+F L
Sbjct: 328 YGEYEWVHKPREMDTSRRKFHL 349

May be required for ribosome biogenesis.

Mus musculus (taxid: 10090)

>sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1

 Score =  275 bits (702), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 152/322 (47%), Positives = 200/322 (62%), Gaps = 29/322 (9%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNK++R  +  KLK +K+ EK    K R   E+ AL  G++ P +  P+TIEN R  
Sbjct: 49  SEIKNKQRRQFMFIKLKQEKRKEKLILRKKR-KKEREAL--GDKAPPKPVPKTIENQRVY 105

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P D+E+      DEF+    +   PKILITT      R   F  +L S+IPNS 
Sbjct: 106 DETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSD 165

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKKII     +D+T ++V++ +R+ P+ L++  LPDGPTAHFK+S + LRK+
Sbjct: 166 VYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKE 225

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           +K  G  PT H PE++LNNF TRLGH +GR+  SL+P  P F GR+V TFHNQRD+IFFR
Sbjct: 226 MKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFR 285

Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
           +HRY+F++++  G                        +QE GPRFTLKL SLQ GTFD+K
Sbjct: 286 YHRYLFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 321

Query: 338 GGEFEWVHK-PEMDTSRRRFFL 358
            GE+EWVHK  EMDTSRR+F L
Sbjct: 322 YGEYEWVHKRHEMDTSRRKFHL 343

May be required for ribosome biogenesis.

Xenopus laevis (taxid: 8355)

>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2

 Score =  265 bits (676), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/309 (46%), Positives = 194/309 (62%), Gaps = 28/309 (9%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNK++R  +  + K Q++ EK    K     E+ AL  G++ P +  P+TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQQRKEKLAAKKKL-KREREAL--GDKAPPKPVPKTIDNQRVY 111

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIP+SH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291

Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
            HRYIF++++  G                        +QE GPRFTLKL SLQ GTFD+K
Sbjct: 292 FHRYIFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 327

Query: 338 GGEFEWVHK 346
            GE+EWVHK
Sbjct: 328 YGEYEWVHK 336

May be required for ribosome biogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1

 Score =  259 bits (661), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 144/322 (44%), Positives = 200/322 (62%), Gaps = 29/322 (9%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNK++R   H      K+ +++K+++ +   +K    L ++ P +  P+TIEN R  
Sbjct: 36  SEIKNKQRR---HTMFLKLKEEKRKKRMELKKKKKKERKALDDKAPPKEVPKTIENQRIY 92

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P+D+E+      DEFS+   +   PK+LITT      R   F  +L +VIP+++
Sbjct: 93  DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 152

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKK+I     + FT ++V++ +R+ P+ +++  LPDGPTAHFK+S + LRK+
Sbjct: 153 VYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKE 212

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           +K  G NPT H PE++LNNF TRLGH +GRL  +LFP  P+F GR+V TFHNQRDFIFFR
Sbjct: 213 MKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFR 272

Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
            HRYIF+ ++  G                        +QE GPRFTLKL SLQ GTFD+K
Sbjct: 273 FHRYIFKNEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSK 308

Query: 338 GGEFEWVHK-PEMDTSRRRFFL 358
            GE+EWVHK  EMD+SRR+F L
Sbjct: 309 FGEYEWVHKRHEMDSSRRKFHL 330

May be required for ribosome biogenesis.

Danio rerio (taxid: 7955)

>sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=4 SV=4

 Score =  251 bits (641), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 144/335 (42%), Positives = 192/335 (57%), Gaps = 33/335 (9%)

Query: 34  KEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRAL---------ELGEEPP 84
           +E+L     +K   +      KH  K ++ K LK     +KRA          ELGE  P
Sbjct: 73  QELLEKYEASKATATKTKDDFKHLPKSQRGKALKRALRKDKRARQGERAQIRDELGESAP 132

Query: 85  ARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGP 144
            +  P+TIE+ RE D T+   +DDE+      DEF+    +  +PK++IT          
Sbjct: 133 QKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTF 192

Query: 145 AFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 204
            F  EL   IPNS  + R    LK IIE AK+++FT ++VVH +R++P+ ++   LP+GP
Sbjct: 193 KFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGP 252

Query: 205 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 264
           TA+FK++ L   +D+K  G  T H PE++LNNF TRLGH + R++  LFP  P+F GRRV
Sbjct: 253 TAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRV 312

Query: 265 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 324
           VTFHNQRD+IFFRHHRY F+ + SK +                       L E GPRFTL
Sbjct: 313 VTFHNQRDYIFFRHHRYEFKKEGSKAA-----------------------LLELGPRFTL 349

Query: 325 KLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 358
           +L  LQ GTFD K GEFEWV K  EM+TSRRRFFL
Sbjct: 350 RLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1

 Score =  224 bits (572), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 144/327 (44%), Positives = 197/327 (60%), Gaps = 40/327 (12%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S ++NKE+R A++ K+K +K  +K ++ +AR  A   A       P      TIE+ RE 
Sbjct: 101 SWMRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPA------NPGH----TIESLREK 150

Query: 99  DET----VCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVI 154
           D+T    +   D++EL      D+FSS  ++   PK+LIT       +   F  EL  + 
Sbjct: 151 DQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIF 210

Query: 155 PNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLV 214
           PN+    R    +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS + 
Sbjct: 211 PNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVK 270

Query: 215 LRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDF 273
           L  DIK +H   T H PE++LNNF TRLG  VGR++ +LF   PEFRGRR VTFHNQRD+
Sbjct: 271 LTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDY 330

Query: 274 IFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGT 333
           IFFRHHRY F TKE       GK+ K               L+E GPRFTLKL SLQ GT
Sbjct: 331 IFFRHHRYEF-TKE-------GKRVK---------------LRELGPRFTLKLRSLQEGT 367

Query: 334 FDTKGGEFEWV--HKPEMDTSRRRFFL 358
           FD+K G++ W+  +K     SRRRFFL
Sbjct: 368 FDSKTGDYAWIISNKRHAMESRRRFFL 394

May be required for ribosome biogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1

 Score =  222 bits (565), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 130/324 (40%), Positives = 182/324 (56%), Gaps = 43/324 (13%)

Query: 41  IKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDE 100
           I NK KR  + A +KH+K  E+    + R   E+   EL E+       +TIENTR  DE
Sbjct: 9   ITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDE 68

Query: 101 TVCRP---DDDEL--FAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIP 155
           T+ +    D+D+L  +  ++++E          PKI +TT          F + L+ ++P
Sbjct: 69  TINKEVEGDEDDLMRYFNSNSNE---------PPKIFLTTNVNAKKSAYEFANILIEILP 119

Query: 156 NSHYYKRG-TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLV 214
           N  + KR   Y LK+I +   K++FT I++++ ++++   L  I LP+GPT +FKLS  V
Sbjct: 120 NVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV 179

Query: 215 LRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFI 274
             K I  HG PT HIPEL+LNNF TRLG  VGRL QS+ PQ+P+  GR+V+T HNQRD+I
Sbjct: 180 EVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYI 239

Query: 275 FFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF 334
           FFR HRY+F+  E  G                        LQE GP+FTLKL  LQ G  
Sbjct: 240 FFRRHRYVFKDNERVG------------------------LQELGPQFTLKLKRLQRGIK 275

Query: 335 DTKGGEFEWVHKPEMDTSRRRFFL 358
           +    E EW HKPEMD  +++F+L
Sbjct: 276 E----ETEWEHKPEMDKEKKKFYL 295

Essential protein. Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1

 Score =  213 bits (543), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/326 (41%), Positives = 188/326 (57%), Gaps = 31/326 (9%)

Query: 41  IKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRA-----LELGEEPPARMTPRTIENT 95
           IKNK  R   + K  HQK  +K ++ K R   E++      L L E  PA     TIE+ 
Sbjct: 4   IKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPA-----TIESK 58

Query: 96  REPDETVCRPD-DDELFAGNDADEFSSIL-KQGCAPKILITTCRFNSNRGPAFISELLSV 153
           R  DET+     D+EL A    DEFS+   ++   PK+L+TT +  S +   F SELL  
Sbjct: 59  RVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDC 118

Query: 154 IPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSK 212
            PN+ + KR G  ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS 
Sbjct: 119 FPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSN 178

Query: 213 LVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRD 272
           L   K+I NHG  TGHIPEL++NNF+TRLG  V R  QSLF Q+P+ +GR+VVT H QRD
Sbjct: 179 LQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRD 238

Query: 273 FIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHG 332
           F+FFR HRY F  K S   D  G                 T LQE GPRFT++L  +Q G
Sbjct: 239 FLFFRRHRYAFREK-SNMPDGIG-----------------TGLQELGPRFTMRLRMVQKG 280

Query: 333 TFDTKGGEFEWVHKPEMDTSRRRFFL 358
            +D K GE  +      ++ RR+F+L
Sbjct: 281 VWDRKEGEVFFESNAGEESDRRKFWL 306

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
359488064	801	PREDICTED: uncharacterized protein LOC10	0.966	0.431	0.807	1e-164
359480784	346	PREDICTED: ribosome production factor 1-	0.966	1.0	0.812	1e-163
302143564	346	unnamed protein product [Vitis vinifera]	0.958	0.991	0.806	1e-163
296082657	319	unnamed protein product [Vitis vinifera]	0.891	1.0	0.868	1e-159
358346575	356	Ribosome production factor [Medicago tru	0.983	0.988	0.75	1e-156
224068234	361	predicted protein [Populus trichocarpa]	1.0	0.991	0.817	1e-155
363807176	354	uncharacterized protein LOC100785331 [Gl	0.896	0.906	0.853	1e-155
224130720	370	predicted protein [Populus trichocarpa]	0.899	0.870	0.860	1e-154
297810003	347	hypothetical protein ARALYDRAFT_912074 [	0.963	0.994	0.766	1e-154
356559438	354	PREDICTED: LOW QUALITY PROTEIN: ribosome	0.896	0.906	0.850	1e-151

>gi|359488064|ref|XP_003633697.1| PREDICTED: uncharacterized protein LOC100263155 [Vitis vinifera]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/358 (80%), Positives = 313/358 (87%), Gaps = 12/358 (3%)

Query: 1   MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKV 60
           MGAKRKK E            +   ++     KK+ILPSMIKNK+KRSAVHAKLKHQKK+
Sbjct: 456 MGAKRKKRE------------EVGGDDEVAGGKKQILPSMIKNKDKRSAVHAKLKHQKKI 503

Query: 61  EKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFS 120
           EKRKK KAR+AAEKRALELGEEPP +  PRTIENTRE DETVC+PDD+ELFAGNDADEFS
Sbjct: 504 EKRKKAKAREAAEKRALELGEEPPVKAIPRTIENTREFDETVCKPDDEELFAGNDADEFS 563

Query: 121 SILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFT 180
           SIL +   PKILITTCRFNS RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAK KDFT
Sbjct: 564 SILNRKSDPKILITTCRFNSTRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKIKDFT 623

Query: 181 SIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATR 240
           S+IVVHTNRREPDALLIIGLPDGPTAHFKLSKLVL KD+KNHGNPT HIPELVLNNF TR
Sbjct: 624 SLIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLHKDVKNHGNPTSHIPELVLNNFTTR 683

Query: 241 LGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKD 300
           LGHR+GR+IQSLFPQ+P FRGRRVVTFHNQRDFIFFRHHRYIFE+KESK  D  G K KD
Sbjct: 684 LGHRIGRMIQSLFPQAPNFRGRRVVTFHNQRDFIFFRHHRYIFESKESKQGDTKGNKDKD 743

Query: 301 AKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 358
           AK EK+SQ KV+ RLQECGPRFTLKL++LQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 744 AKGEKSSQGKVVARLQECGPRFTLKLINLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 801

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480784|ref|XP_002268541.2| PREDICTED: ribosome production factor 1-like [Vitis vinifera]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 291/358 (81%), Positives = 316/358 (88%), Gaps = 12/358 (3%)

Query: 1   MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKV 60
           MGAKRKK+E            +   ++     KK+ILPSMIKNKEKRSAVHAKLKHQKK+
Sbjct: 1   MGAKRKKTE------------EVGGDDEVGGGKKQILPSMIKNKEKRSAVHAKLKHQKKI 48

Query: 61  EKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFS 120
           EKRKK KAR+AAEKRALELGEEPPA+  P TIENTRE DETVC+PDD+ELFAGNDADEFS
Sbjct: 49  EKRKKAKAREAAEKRALELGEEPPAKKIPHTIENTREFDETVCKPDDEELFAGNDADEFS 108

Query: 121 SILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFT 180
           SIL +   PKILITTCRFNS RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAKKKDFT
Sbjct: 109 SILNRKSDPKILITTCRFNSTRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKKKDFT 168

Query: 181 SIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATR 240
           S+IVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD+KNHGNPT HIPELVLNNF TR
Sbjct: 169 SLIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDVKNHGNPTSHIPELVLNNFTTR 228

Query: 241 LGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKD 300
           LGHR+GR+IQSLFPQ+P F GRRVVTFHNQRDFIFFRHHRYIFE+KESK  D+ G K KD
Sbjct: 229 LGHRIGRMIQSLFPQAPNFGGRRVVTFHNQRDFIFFRHHRYIFESKESKQGDSKGNKDKD 288

Query: 301 AKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 358
           AK EK+S+ KV+ RLQECGPRFTLKL+SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 289 AKGEKSSRGKVVARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143564|emb|CBI22317.3| unnamed protein product [Vitis vinifera]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 291/361 (80%), Positives = 315/361 (87%), Gaps = 18/361 (4%)

Query: 1   MGAKRKKSE---GEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQ 57
           MGAKRKK E   G++ +  G               KK+ILPSMIKNK+KRSAVHAKLKHQ
Sbjct: 1   MGAKRKKREEVGGDDEVAGG---------------KKQILPSMIKNKDKRSAVHAKLKHQ 45

Query: 58  KKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDAD 117
           KK+EKRKK KAR+AAEKRALELGEEPP +  PRTIENTRE DETVC+PDD+ELFAGNDAD
Sbjct: 46  KKIEKRKKAKAREAAEKRALELGEEPPVKAIPRTIENTREFDETVCKPDDEELFAGNDAD 105

Query: 118 EFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKK 177
           EFSSIL +   PKILITTCRFNS RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAK K
Sbjct: 106 EFSSILNRKSDPKILITTCRFNSTRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKIK 165

Query: 178 DFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNF 237
           DFTS+IVVHTNRREPDALLIIGLPDGPTAHFKLSKLVL KD+KNHGNPT HIPELVLNNF
Sbjct: 166 DFTSLIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLHKDVKNHGNPTSHIPELVLNNF 225

Query: 238 ATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 297
            TRLGHR+GR+IQSLFPQ+P FRGRRVVTFHNQRDFIFFRHHRYIFE+KESK  D  G K
Sbjct: 226 TTRLGHRIGRMIQSLFPQAPNFRGRRVVTFHNQRDFIFFRHHRYIFESKESKQGDTKGNK 285

Query: 298 AKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFF 357
            KDAK EK+SQ KV+ RLQECGPRFTLKL++LQHGTFDTKGGE+EWVHKPEMDTSRRRFF
Sbjct: 286 DKDAKGEKSSQGKVVARLQECGPRFTLKLINLQHGTFDTKGGEYEWVHKPEMDTSRRRFF 345

Query: 358 L 358
           L
Sbjct: 346 L 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082657|emb|CBI21662.3| unnamed protein product [Vitis vinifera]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/319 (86%), Positives = 297/319 (93%)

Query: 40  MIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPD 99
           MIKNKEKRSAVHAKLKHQKK+EKRKK KAR+AAEKRALELGEEPPA+  P TIENTRE D
Sbjct: 1   MIKNKEKRSAVHAKLKHQKKIEKRKKAKAREAAEKRALELGEEPPAKKIPHTIENTREFD 60

Query: 100 ETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHY 159
           ETVC+PDD+ELFAGNDADEFSSIL +   PKILITTCRFNS RGPAFISELLSVIPN+HY
Sbjct: 61  ETVCKPDDEELFAGNDADEFSSILNRKSDPKILITTCRFNSTRGPAFISELLSVIPNAHY 120

Query: 160 YKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDI 219
           YKRGTYDLKKI+EYAKKKDFTS+IVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD+
Sbjct: 121 YKRGTYDLKKIVEYAKKKDFTSLIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDV 180

Query: 220 KNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
           KNHGNPT HIPELVLNNF TRLGHR+GR+IQSLFPQ+P F GRRVVTFHNQRDFIFFRHH
Sbjct: 181 KNHGNPTSHIPELVLNNFTTRLGHRIGRMIQSLFPQAPNFGGRRVVTFHNQRDFIFFRHH 240

Query: 280 RYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGG 339
           RYIFE+KESK  D+ G K KDAK EK+S+ KV+ RLQECGPRFTLKL+SLQHGTFDTKGG
Sbjct: 241 RYIFESKESKQGDSKGNKDKDAKGEKSSRGKVVARLQECGPRFTLKLISLQHGTFDTKGG 300

Query: 340 EFEWVHKPEMDTSRRRFFL 358
           E+EWVHKPEMDTSRRRFFL
Sbjct: 301 EYEWVHKPEMDTSRRRFFL 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346575|ref|XP_003637342.1| Ribosome production factor [Medicago truncatula] gi|355503277|gb|AES84480.1| Ribosome production factor [Medicago truncatula]

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/360 (75%), Positives = 303/360 (84%), Gaps = 8/360 (2%)

Query: 1   MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKV 60
           +G KRK++      N+ + E++ +      + K+   PSMIKNKEKRS +HAKLKHQKK+
Sbjct: 3   IGGKRKRN------NDSDGEDNSSKRETRTETKEPFRPSMIKNKEKRSEIHAKLKHQKKL 56

Query: 61  EKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFS 120
           EKR K  ARDAA KRA+ELGEEPP +  P+TIENTRE DETVC+PDD+ELFAGNDADEFS
Sbjct: 57  EKRAKSNARDAAVKRAIELGEEPPEKKVPKTIENTREVDETVCKPDDEELFAGNDADEFS 116

Query: 121 SILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKK--IIEYAKKKD 178
           SILK+  +PKILITTCRFNS RGPA ISELL VIPN+HY+KRGTYDLKK  I+EYA KKD
Sbjct: 117 SILKRQQSPKILITTCRFNSTRGPALISELLQVIPNAHYFKRGTYDLKKVMIVEYANKKD 176

Query: 179 FTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFA 238
           FTS++VVHTNRREP+ALLIIGLP+GPTAHFKL+ LVLRKDIKNHG PT H PELVLNNF 
Sbjct: 177 FTSLVVVHTNRREPNALLIIGLPEGPTAHFKLTNLVLRKDIKNHGVPTSHQPELVLNNFT 236

Query: 239 TRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKA 298
           TRLGHRVGR+IQSLFPQ PEF+GRRVVTFHNQRDFIFFRHHRYIFETKE K  ++ GK  
Sbjct: 237 TRLGHRVGRMIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEIKKIESKGKND 296

Query: 299 KDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 358
           +D KSEK    K I RLQECGPRFTLKL SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 297 EDGKSEKVPDHKTIARLQECGPRFTLKLKSLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068234|ref|XP_002302686.1| predicted protein [Populus trichocarpa] gi|222844412|gb|EEE81959.1| predicted protein [Populus trichocarpa]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/361 (81%), Positives = 315/361 (87%), Gaps = 3/361 (0%)

Query: 1   MGAKRKKSEGEELLNEG---EKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQ 57
           MG KR+ SE E +   G   E +  +  + + K   +EILPSMIKNKEKRSAVHAKLKH+
Sbjct: 1   MGGKRRTSESEAMEEYGSDVELDRKEKKKKMEKGKTREILPSMIKNKEKRSAVHAKLKHE 60

Query: 58  KKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDAD 117
           KKVEKRKKLKARDA EKRALELGEEPP R  PRTIENTRE DETVC+PDD+ELFAGNDAD
Sbjct: 61  KKVEKRKKLKARDAEEKRALELGEEPPPRKIPRTIENTRENDETVCKPDDEELFAGNDAD 120

Query: 118 EFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKK 177
           EFSSILK+   PKILITT RFNS RGPAFISELL VIPN+HYYKRGTYDLKKI+EYAKK+
Sbjct: 121 EFSSILKRERTPKILITTSRFNSTRGPAFISELLQVIPNAHYYKRGTYDLKKIVEYAKKQ 180

Query: 178 DFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNF 237
           DFTS+IVVHTNRREPDALLIIGLPDGPTAHFKLS+LVLRKDIKNHGNPT H PELVL NF
Sbjct: 181 DFTSLIVVHTNRREPDALLIIGLPDGPTAHFKLSRLVLRKDIKNHGNPTSHEPELVLTNF 240

Query: 238 ATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 297
            TRLGHR GR+IQSLFPQ P FRGRRVVTFHNQRD+IFFRHHRYIFETKESK SD+ GKK
Sbjct: 241 TTRLGHRAGRIIQSLFPQEPNFRGRRVVTFHNQRDYIFFRHHRYIFETKESKQSDSKGKK 300

Query: 298 AKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFF 357
            KD K EK SQQKVI RLQECGPRFTLKL SLQHGTFDTKGGE+EWVHKPEMDTSRRRFF
Sbjct: 301 GKDGKGEKISQQKVIARLQECGPRFTLKLRSLQHGTFDTKGGEYEWVHKPEMDTSRRRFF 360

Query: 358 L 358
           L
Sbjct: 361 L 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807176|ref|NP_001242604.1| uncharacterized protein LOC100785331 [Glycine max] gi|255644450|gb|ACU22729.1| unknown [Glycine max]

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/321 (85%), Positives = 293/321 (91%)

Query: 38  PSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTRE 97
           PSMIKNKEKRS +HAKLKHQKK+EKR K KARDAA K+ALELGEEPP +  PRTIENTRE
Sbjct: 34  PSMIKNKEKRSELHAKLKHQKKLEKRAKAKARDAALKKALELGEEPPEKKVPRTIENTRE 93

Query: 98  PDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNS 157
            DETVC+PDD+ELFAGNDADEF  IL Q   PKILITTCRF+S RGPAFISELLSVIPN+
Sbjct: 94  LDETVCKPDDEELFAGNDADEFGPILNQQQTPKILITTCRFHSTRGPAFISELLSVIPNA 153

Query: 158 HYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
           HY+KRGTYDLKKI+EYAKKKDFTSIIVVHTNRREPDALLIIG+PDGPTAHFKLSKLVLRK
Sbjct: 154 HYFKRGTYDLKKIVEYAKKKDFTSIIVVHTNRREPDALLIIGVPDGPTAHFKLSKLVLRK 213

Query: 218 DIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           DIKNHGNPTGH PELVLNNF TRLGHRVGRLIQSLFPQ PEF+GRRVVTFHNQRDFIFFR
Sbjct: 214 DIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKGRRVVTFHNQRDFIFFR 273

Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
           HHRYIFETKE K +++ GKK KD +SE   +QK I RLQECGPRFTLKL+SLQHGTFDTK
Sbjct: 274 HHRYIFETKEVKKAESKGKKDKDGESENVPEQKTIARLQECGPRFTLKLISLQHGTFDTK 333

Query: 338 GGEFEWVHKPEMDTSRRRFFL 358
           GGE+EWVHKPEMDTSRRRFFL
Sbjct: 334 GGEYEWVHKPEMDTSRRRFFL 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130720|ref|XP_002320911.1| predicted protein [Populus trichocarpa] gi|222861684|gb|EEE99226.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/323 (86%), Positives = 292/323 (90%), Gaps = 1/323 (0%)

Query: 36  ILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENT 95
           ILPSMIKNKEKRSAVHAKLK QKKVEKRKKLKARDA EKRALELGEEPP R  PRTIENT
Sbjct: 49  ILPSMIKNKEKRSAVHAKLKQQKKVEKRKKLKARDAEEKRALELGEEPPPRKIPRTIENT 108

Query: 96  REPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIP 155
           RE DETVC+PDD ELFAGNDADEFSS+LK+   PKILITT RFNS RGPAFISELL VIP
Sbjct: 109 REFDETVCKPDD-ELFAGNDADEFSSVLKRDRIPKILITTSRFNSTRGPAFISELLEVIP 167

Query: 156 NSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVL 215
           N+HYYKRGTYDLKKI+EYAKK+DFTS+IVVHTNRREPD LLIIGLPDGPTAHFKLS+LVL
Sbjct: 168 NAHYYKRGTYDLKKIVEYAKKQDFTSLIVVHTNRREPDGLLIIGLPDGPTAHFKLSRLVL 227

Query: 216 RKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIF 275
           RKDIK+HGNPT H PELVL NF T LGHR+GRLIQSLFPQ P FRGRRVVTFHNQRD+IF
Sbjct: 228 RKDIKSHGNPTSHEPELVLTNFTTCLGHRIGRLIQSLFPQEPNFRGRRVVTFHNQRDYIF 287

Query: 276 FRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFD 335
           FRHHRYIFETKESK SD+ GK  KD K EK +QQKVI RLQECGPRFTLKL SLQH TFD
Sbjct: 288 FRHHRYIFETKESKQSDSKGKNRKDGKGEKNTQQKVIARLQECGPRFTLKLRSLQHETFD 347

Query: 336 TKGGEFEWVHKPEMDTSRRRFFL 358
           TKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 348 TKGGEYEWVHKPEMDTSRRRFFL 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810003|ref|XP_002872885.1| hypothetical protein ARALYDRAFT_912074 [Arabidopsis lyrata subsp. lyrata] gi|297318722|gb|EFH49144.1| hypothetical protein ARALYDRAFT_912074 [Arabidopsis lyrata subsp. lyrata]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 276/360 (76%), Positives = 302/360 (83%), Gaps = 15/360 (4%)

Query: 1   MGAKRKKSEG--EELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQK 58
           MG KRKK +G  EE+ +EG  ++  N      + +  ILPSMIKNK+KRS V+AK KH+K
Sbjct: 1   MGFKRKKGDGDGEEMESEGRGKSSFN----GTEKRSVILPSMIKNKDKRSKVYAKQKHEK 56

Query: 59  KVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADE 118
           KVEK+KK++ARDAAEKRALELGEEPP +M P+TIENTRE DETVCRPDD+ELFA  DADE
Sbjct: 57  KVEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTREADETVCRPDDEELFADIDADE 116

Query: 119 FSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKD 178
           F+ +L++   PKILITTCRFNS RGPAFISELLSVIPNSHY KRGTYDLKKI+EYA KKD
Sbjct: 117 FNPVLRREITPKILITTCRFNSTRGPAFISELLSVIPNSHYQKRGTYDLKKIVEYATKKD 176

Query: 179 FTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFA 238
           FTS+IVVHTNRREPDALLIIGLP GPTAHFKLS LVLRKDIKNHGNPT H PELVLNNF 
Sbjct: 177 FTSLIVVHTNRREPDALLIIGLPTGPTAHFKLSNLVLRKDIKNHGNPTSHQPELVLNNFT 236

Query: 239 TRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKA 298
           TRLG+RVGR  QSLFP  P FRGRRVVTFHNQRDFIFFRHHRYIFETKESK SD    K 
Sbjct: 237 TRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIFFRHHRYIFETKESKQSD----KG 292

Query: 299 KDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 358
           KD       Q+ +  RLQECGPRFTLKLV+LQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Sbjct: 293 KDG-----VQETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 347

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559438|ref|XP_003548006.1| PREDICTED: LOW QUALITY PROTEIN: ribosome production factor 1-like [Glycine max]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 273/321 (85%), Positives = 293/321 (91%)

Query: 38  PSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTRE 97
           PSMIKNKEKRS +HAKLK QKK++KR K KARDAA KRAL+LGEEPP +  PRTIENTRE
Sbjct: 34  PSMIKNKEKRSELHAKLKQQKKLDKRAKAKARDAALKRALDLGEEPPEKKVPRTIENTRE 93

Query: 98  PDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNS 157
            DETVC+PDDDELFAGNDADEF SIL Q   PKILITTCRF+S RGPAFISELLSVIPN+
Sbjct: 94  LDETVCKPDDDELFAGNDADEFGSILNQQQTPKILITTCRFHSTRGPAFISELLSVIPNA 153

Query: 158 HYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
           HY+KRGTYDLKKI+EYAKKKDFTS+IVVHTNRREPDALLIIG+PDGPTAHFKLSKLVLRK
Sbjct: 154 HYFKRGTYDLKKIVEYAKKKDFTSVIVVHTNRREPDALLIIGVPDGPTAHFKLSKLVLRK 213

Query: 218 DIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           DIKNHGNPTGH PELVLNNF TRLGHRVGRLIQSLFPQ PEF+GRRVVTFHNQRDFIFFR
Sbjct: 214 DIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKGRRVVTFHNQRDFIFFR 273

Query: 278 HHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTK 337
           HHRYIFETKE K +++ GKK K+ KSE   +QK I RLQECGPRFTLKL+SLQHGTFDTK
Sbjct: 274 HHRYIFETKEVKKTESKGKKDKEGKSENVPEQKTIARLQECGPRFTLKLISLQHGTFDTK 333

Query: 338 GGEFEWVHKPEMDTSRRRFFL 358
           GGE+EWVHKPEMDTSRRRFFL
Sbjct: 334 GGEYEWVHKPEMDTSRRRFFL 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2116992	343	MEE49 "AT4G01560" [Arabidopsis	0.865	0.903	0.767	2.8e-130
UNIPROTKB|A4FUG9	349	BXDC5 "Uncharacterized protein	0.712	0.730	0.455	1.6e-73
UNIPROTKB|Q5R631	349	RPF1 "Ribosome production fact	0.712	0.730	0.459	1.6e-73
UNIPROTKB|Q9H9Y2	349	RPF1 "Ribosome production fact	0.712	0.730	0.455	3.2e-73
UNIPROTKB|I3LN44	339	RPF1 "Uncharacterized protein"	0.712	0.752	0.452	6.7e-73
UNIPROTKB|E2RLN4	349	RPF1 "Uncharacterized protein"	0.712	0.730	0.452	8.6e-73
MGI|MGI:1917535	349	Rpf1 "ribosome production fact	0.712	0.730	0.448	1.1e-72
UNIPROTKB|F1NRK2	347	RPF1 "Uncharacterized protein"	0.712	0.734	0.448	2.3e-70
UNIPROTKB|Q8AVP1	343	rpf1 "Ribosome production fact	0.712	0.743	0.436	3.3e-69
ZFIN|ZDB-GENE-040625-177	352	rpf1 "ribosome production fact	0.703	0.715	0.436	6e-68

TAIR|locus:2116992 MEE49 "AT4G01560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1278 (454.9 bits), Expect = 2.8e-130, P = 2.8e-130
 Identities = 248/323 (76%), Positives = 268/323 (82%)

Query:    36 ILPSMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENT 95
             ILPSMIKNK+KRS V+A               ARDAAEKRALELGEEPP +M P+TIENT
Sbjct:    34 ILPSMIKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENT 93

Query:    96 REPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIP 155
             RE DETVCRPDD+ELFA  DADEF+ +L++  APK+L+TTCRFNS RGPA ISELLSVIP
Sbjct:    94 RESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIP 153

Query:   156 NSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVL 215
             NSHY KRGTYDLKKI+EYA KKDFTS+IVVHTNRREPDALLIIGLP+GPTAHFKLS LVL
Sbjct:   154 NSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKLSNLVL 213

Query:   216 RKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIF 275
             RKDIKNHGNPT H PELVLNNF TRLG+RVGR  QSLFP  P FRGRRVVTFHNQRDFIF
Sbjct:   214 RKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIF 273

Query:   276 FRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFD 335
             FRHHRYIFETKESK             S+K  ++ +  RLQECGPRFTLKLV+LQHGTFD
Sbjct:   274 FRHHRYIFETKESK-------------SDKGKEETIKPRLQECGPRFTLKLVTLQHGTFD 320

Query:   336 TKGGEFEWVHKPEMDTSRRRFFL 358
             TKGGEFEWVHKPEMDTSRRRFFL
Sbjct:   321 TKGGEFEWVHKPEMDTSRRRFFL 343

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

UNIPROTKB|A4FUG9 BXDC5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 579 (208.9 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
 Identities = 119/261 (45%), Positives = 165/261 (63%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET+  P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct:   112 DETIVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRYIFETKESKGSDANGKK 297
             R HRYIF++++  G    G +
Sbjct:   291 RFHRYIFKSEKKVGIQELGPR 311

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q5R631 RPF1 "Ribosome production factor 1" [Pongo abelii (taxid:9601)]

 Score = 579 (208.9 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
 Identities = 120/261 (45%), Positives = 163/261 (62%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNKE+R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKERR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct:   112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRYIFETKESKGSDANGKK 297
             R HRYIF +++  G    G +
Sbjct:   291 RFHRYIFRSEKKVGIQELGPR 311

GO:0003723 "RNA binding" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

UNIPROTKB|Q9H9Y2 RPF1 "Ribosome production factor 1" [Homo sapiens (taxid:9606)]

 Score = 576 (207.8 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
 Identities = 119/261 (45%), Positives = 163/261 (62%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct:   112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRYIFETKESKGSDANGKK 297
             R HRYIF +++  G    G +
Sbjct:   291 RFHRYIFRSEKKVGIQELGPR 311

GO:0006364 "rRNA processing" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

UNIPROTKB|I3LN44 RPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 573 (206.8 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
 Identities = 118/261 (45%), Positives = 163/261 (62%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    45 SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 101

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET+  P+D+E+      DEF+S   +   PKILITT      R      +L +VIPNSH
Sbjct:   102 DETIVDPNDEEVAYDEATDEFASYFNRQTCPKILITTSDRPHGRTVRLCEQLSTVIPNSH 161

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   162 VYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAHFKMSSVRLRK 220

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT H PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   221 EIKRRGKDPTEHTPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 280

Query:   277 RHHRYIFETKESKGSDANGKK 297
             R HRYIF++++  G    G +
Sbjct:   281 RFHRYIFKSEKKVGIQELGPR 301

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RLN4 RPF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 572 (206.4 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 118/261 (45%), Positives = 163/261 (62%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                 +   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKQRR---HLMFTRWKQQQRKEKLAIKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET+  P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct:   112 DETIVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPSGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHIPEVILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRYIFETKESKGSDANGKK 297
             R HRYIF++++  G    G +
Sbjct:   291 RFHRYIFKSEKKVGIQELGPR 311

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:1917535 Rpf1 "ribosome production factor 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 571 (206.1 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
 Identities = 117/261 (44%), Positives = 164/261 (62%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIP+SH
Sbjct:   112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRYIFETKESKGSDANGKK 297
             R HRYIF++++  G    G +
Sbjct:   291 RFHRYIFKSEKKVGIQELGPR 311

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019843 "rRNA binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NRK2 RPF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 559 (201.8 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 117/261 (44%), Positives = 159/261 (60%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                 +    K    LG++ P +  P+TIEN R  
Sbjct:    53 SEIKNKQRR---HFMFLRWKQQQRKEKLALKKKRRKEREALGDKAPPKAIPKTIENQRIY 109

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEF+    +   PKILITT      R   F  +L +VIPNSH
Sbjct:   110 DETTVDPNDEEVAFDIATDEFAPYFNRQTVPKILITTSDRPRGRTVRFCEQLSTVIPNSH 169

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LK+II     +DFT +IV++ +R+ P+ L++  LPDGPTAHF++S + LRK
Sbjct:   170 VYYRRGLA-LKRIIPQCIARDFTDLIVINEDRKIPNGLVLSHLPDGPTAHFRMSSVRLRK 228

Query:   218 DIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G  PT H+PE++LNNF TRLGH +GR+  SLFP  P+F GR+V TFHNQRD+IFF
Sbjct:   229 EIKRKGKEPTEHVPEVILNNFTTRLGHSIGRMFASLFPHDPQFIGRQVATFHNQRDYIFF 288

Query:   277 RHHRYIFETKESKGSDANGKK 297
             R HRYIF++++  G    G +
Sbjct:   289 RFHRYIFKSEKKVGIQELGPR 309

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q8AVP1 rpf1 "Ribosome production factor 1" [Xenopus laevis (taxid:8355)]

 Score = 547 (197.6 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
 Identities = 114/261 (43%), Positives = 158/261 (60%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R  +                  R   E+ AL  G++ P +  P+TIEN R  
Sbjct:    49 SEIKNKQRRQFMFIKLKQEKRKEKLILRKKRKK-EREAL--GDKAPPKPVPKTIENQRVY 105

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P D+E+      DEF+    +   PKILITT      R   F  +L S+IPNS 
Sbjct:   106 DETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSD 165

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +D+T ++V++ +R+ P+ L++  LPDGPTAHFK+S + LRK
Sbjct:   166 VYYRRGLA-LKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRK 224

Query:   218 DIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             ++K  G  PT H PE++LNNF TRLGH +GR+  SL+P  P F GR+V TFHNQRD+IFF
Sbjct:   225 EMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFF 284

Query:   277 RHHRYIFETKESKGSDANGKK 297
             R+HRY+F++++  G    G +
Sbjct:   285 RYHRYLFKSEKKVGIQELGPR 305

GO:0003723 "RNA binding" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

ZFIN|ZDB-GENE-040625-177 rpf1 "ribosome production factor 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 542 (195.9 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
 Identities = 114/261 (43%), Positives = 161/261 (61%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                 +   E++AL  G++ P +  P+TIEN R  
Sbjct:    61 SEIKNKQRR---HTMFLKLKEEKRKKRMELKKK-ERKAL--GDKAPPKEVPKTIENQRIY 114

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEFS+   +   PK+LITT      R   F  +L +VIP+++
Sbjct:   115 DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 174

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKK+I     + FT ++V++ +R+ P+ +++  LPDGPTAHFK+S + LRK
Sbjct:   175 VYYRRGLA-LKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRK 233

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             ++K  G NPT H PE++LNNF TRLGH +GRL  +LFP  P+F GR+V TFHNQRDFIFF
Sbjct:   234 EMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFF 293

Query:   277 RHHRYIFETKESKGSDANGKK 297
             R HRYIF+ ++  G    G +
Sbjct:   294 RFHRYIFKNEKKVGIQELGPR 314

GO:0005730 "nucleolus" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R631	RPF1_PONAB	No assigned EC number	0.4813	0.8184	0.8395	yes	no
O14180	YDS4_SCHPO	No assigned EC number	0.4110	0.8240	0.9640	yes	no
Q6IQU6	RPF1_DANRE	No assigned EC number	0.4472	0.8184	0.8878	yes	no
Q9H9Y2	RPF1_HUMAN	No assigned EC number	0.4782	0.8184	0.8395	yes	no
Q7TND5	RPF1_MOUSE	No assigned EC number	0.4720	0.8184	0.8395	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	6e-47
pfam04427	176	pfam04427, Brix, Brix domain	2e-41
COG2136	191	COG2136, IMP4, Predicted exosome subunit/U3 small	3e-35

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  157 bits (398), Expect = 6e-47
 Identities = 76/203 (37%), Positives = 100/203 (49%), Gaps = 33/203 (16%)

Query: 132 LITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVH--TNR 189
           LITT R  S R      +L  + P S    RG   L +++E+A +K  T ++VV   +++
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSK 60

Query: 190 REPDALLIIGLPDGPTAHFKLSKLVLRKDIKN---HGNPTGHIPELVLNNFATRLGHRVG 246
             P  L I  LP+GPT  FK+  + LRK++K        TG  P L+ NNF T LG  + 
Sbjct: 61  GRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIK 120

Query: 247 RLIQSLFPQSPEFR-----GRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDA 301
            L Q LFP  PE +      RRVVTF NQ D+IFFRH+R  F  K+ +            
Sbjct: 121 ELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRIKFGKKKPR------------ 168

Query: 302 KSEKTSQQKVITRLQECGPRFTL 324
                        LQE GPRFTL
Sbjct: 169 -----------VELQEIGPRFTL 180

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  142 bits (361), Expect = 2e-41
 Identities = 75/205 (36%), Positives = 95/205 (46%), Gaps = 37/205 (18%)

Query: 133 ITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREP 192
           ITT R  S R      +L  + PN+    RG   LK ++E+A +K  TS++V     ++P
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLFPNAKKLNRGKKKLKDLLEFAGEKGDTSLLVFGE-HKKP 59

Query: 193 DALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATR--LGHRVGRLI 249
             L I  LP+GPT  F++S + L KDIK  G    G  P LV N F         +  L+
Sbjct: 60  LNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKGSRPLLVFNGFFFTRLGLKLIKELL 119

Query: 250 QSLFPQ-----SPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSE 304
           Q LFP       P   G RV+TF NQRD IFFRH+RY                       
Sbjct: 120 QDLFPGPNVHKIPLKGGDRVITFSNQRDTIFFRHYRY----------------------- 156

Query: 305 KTSQQKVITRLQECGPRFTLKLVSL 329
                K    LQE GPRFTLKL  +
Sbjct: 157 -----KKKVELQEIGPRFTLKLRRI 176

Length = 176

>gnl|CDD|225047 COG2136, IMP4, Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

 Score =  127 bits (320), Expect = 3e-35
 Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 32/214 (14%)

Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
           PK+L+TT R  S R  +F  +L  V+PN+++ +RG   + ++ E A  +  T +++V   
Sbjct: 2   PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGER 61

Query: 189 RREPDALLIIGL-PDGPTAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGH-RV 245
           R  P  L    L P+G T  FKLS + LR++I   G     H PEL+ NNF T LG  +V
Sbjct: 62  RGNPARLTFYDLEPEGLTFSFKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKV 121

Query: 246 GRLIQSL----FPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDA 301
                 L    F  +P +    V T  N+ DF   R HR +FE                 
Sbjct: 122 AEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHRRVFEEDG-------------- 167

Query: 302 KSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFD 335
                        L+E GPR TL+L  ++ G  +
Sbjct: 168 -----------IGLEEVGPRLTLRLWRMEDGRGE 190

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	100.0
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	100.0
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	99.97
PRK03972	208	ribosomal biogenesis protein; Validated	99.96
PRK00933	165	ribosomal biogenesis protein; Validated	99.32
KOG3031	307	consensus Protein required for biogenesis of the r	98.66
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	96.65
PRK03972	208	ribosomal biogenesis protein; Validated	95.75

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=100.00  E-value=2.3e-91  Score=652.36  Aligned_cols=299  Identities=56%  Similarity=0.876  Sum_probs=291.0

Q ss_pred             CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhcccCCCcccCCCcccccCCCC
Q 018273           36 ILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGND  115 (358)
Q Consensus        36 ~~~~~i~nk~~R~~~~~k~~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~k~~p~tie~~r~~d~t~~~~~d~e~~~~~~  115 (358)
                      ....+|+||.+|++.|.+.+++|.+++.+.|+++.+++.+.+|+|+.+|+++||+||||+|+||+|+++++|+|++.|++
T Consensus         4 ~~~~~~~n~~~~~~~~~~~k~~k~~~~~~~rk~k~~~~~~~~el~~~~~~~~vp~TIe~~R~yDeT~v~~~deEl~~d~~   83 (302)
T KOG2780|consen    4 GNDIKIKNKDKRQKSYMKNKHQKNLEKLKMRKEKAKEKRELPELGELRPQKNVPKTIESTRVYDETIVEEEDEELQADLA   83 (302)
T ss_pred             cccccccccccchHHHhhhHHHhhhHHHHHHHHHHHHhhhchhhhhccCccCCcchhhhhhhccccccCCCcHHHhhhhh
Confidence            45678999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhcCCCceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceE
Q 018273          116 ADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDAL  195 (358)
Q Consensus       116 ~def~~~f~~~~~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L  195 (358)
                      +|||++||+.+..|||||||+.+|+.++..||.+|+.|||||.+..|++++++.|+++|..++||++|||+|+++.|++|
T Consensus        84 ~deF~~~~~~~~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L  163 (302)
T KOG2780|consen   84 DDEFSPYFRREFSPKVLITTSKNPKRTTYKFASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGL  163 (302)
T ss_pred             hhhhHHHHhcccCccEEEEcCCCCcccHHHHHHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCceEEEEEeceeehhhhccCCCCCCCCceeeecCCCCchhHHHHHHHHhcCCCCCCCCCCeEEEEEecCCeEE
Q 018273          196 LIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIF  275 (358)
Q Consensus       196 ~I~~lP~GPT~~FkI~n~~l~kdi~~~g~~~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~~~rRVvtF~nq~d~I~  275 (358)
                      .|+|||+|||++|+++||.+.+||..+|++++|.|+||+|||+|++|+.|++||++|||++|+|.|||||+||||+||||
T Consensus       164 ~iihlP~GPT~~Fkls~~~~~kdi~k~g~~t~h~PElIlNNFtTrlG~~v~r~f~sLfp~~p~f~gRrvvtFhnQrD~If  243 (302)
T KOG2780|consen  164 KIIHLPNGPTAYFKLSNVVLTKDIKKHGRPTSHIPELILNNFTTRLGMTVGRLFASLFPHDPQFTGRRVVTFHNQRDYIF  243 (302)
T ss_pred             EEEecCCCCceEEEeecccchhhhhhcCCcccccchhhhhcccchhhHHHHHHHHHhCCCCccccceeEEEEEecCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeeEEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCCCCccccc
Q 018273          276 FRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRR  355 (358)
Q Consensus       276 FRhhrY~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~~~~~r~~  355 (358)
                      ||||||+|..++.+                       |+||||||||||+|+++|+|+||.+.|+|+|++++ |+++|++
T Consensus       244 FRhhRY~Fkee~~k-----------------------vglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~~-~~tsrr~  299 (302)
T KOG2780|consen  244 FRHHRYEFKEEEIK-----------------------VGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHKK-METSRRK  299 (302)
T ss_pred             EEEEEEeecccccc-----------------------cchhhcCCceeeeehhhhhccccccceeeeeeecc-cccchhc
Confidence            99999999865443                       69999999999999999999999999999999999 9999999


Q ss_pred             cCC
Q 018273          356 FFL  358 (358)
Q Consensus       356 f~l  358 (358)
                      |||
T Consensus       300 f~L  302 (302)
T KOG2780|consen  300 FFL  302 (302)
T ss_pred             ccC
Confidence            998

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=1.1e-68  Score=495.01  Aligned_cols=279  Identities=35%  Similarity=0.601  Sum_probs=244.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhc--ccCCCcccCCCcccccCCCCcchhhh
Q 018273           44 KEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENT--REPDETVCRPDDDELFAGNDADEFSS  121 (358)
Q Consensus        44 k~~R~~~~~k~~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~k~~p~tie~~--r~~d~t~~~~~d~e~~~~~~~def~~  121 (358)
                      ++||++||+|.+.++.++.    .++++..++|++.+     +.+|+.|.+.  --.|+-..+....|...-.-+|||. 
T Consensus         7 R~RREylyrK~~E~~~k~~----~ekk~~lr~ALe~n-----k~ip~elrkda~~l~d~~~~ed~~~~~~~~~vddEy~-   76 (290)
T KOG2781|consen    7 RERREYLYRKALEEQDKSL----QEKKRRLREALEEN-----KKIPKELRKDALLLKDEIYYEDEGGEADDSHVDDEYR-   76 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcC-----CCCChHHHHhHHHhhhhhhccccccccccccccHHHH-
Confidence            8999999999999887774    33456677888887     8999988774  2222221111111111123358996 


Q ss_pred             hhhcCCCceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecC
Q 018273          122 ILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP  201 (358)
Q Consensus       122 ~f~~~~~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP  201 (358)
                       ++|..+|||+|||||+||+++.+|+|+|+.||||++.++||.+.+.++++.|..+|+|++|||+|++|.|.+|.|||||
T Consensus        77 -~ag~~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlP  155 (290)
T KOG2781|consen   77 -WAGEEDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLP  155 (290)
T ss_pred             -hccCCCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecC
Confidence             5899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEeceeehhhhccCCCCCCCCceeeecCCCCchhHHHHHHHHhcCCCCCCCCCCeEEEEEecCCeEEEEeeee
Q 018273          202 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY  281 (358)
Q Consensus       202 ~GPT~~FkI~n~~l~kdi~~~g~~~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~~~rRVvtF~nq~d~I~FRhhrY  281 (358)
                      .|||++|.|.||.+++||++.|+++..+|+||||||+|.+|++++.+|..|||. |+..++|||||.|++|||.||||.|
T Consensus       156 fGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP~-pk~ds~Rvvtf~N~~DyIsFRhhvy  234 (290)
T KOG2781|consen  156 FGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFDNFTTKLGKRVKTILKHLFPV-PKDDSKRVVTFANRNDYISFRHHVY  234 (290)
T ss_pred             CCCceEeeeeeeeecccccccccccccCceEEeccccchHHHHHHHHHHHhCCC-CcCCcccEEEEecCCceEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999995 8889999999999999999999988


Q ss_pred             EEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCCCCccccccCC
Q 018273          282 IFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL  358 (358)
Q Consensus       282 ~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~~~~~r~~f~l  358 (358)
                      .-.....                        |.|.|+||||.|+|+.|..||++.+.+++||+++|||+|+|+|-||
T Consensus       235 ~~~~~k~------------------------vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR~~l  287 (290)
T KOG2781|consen  235 KKTDGKE------------------------VELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKRDFL  287 (290)
T ss_pred             ecCCCce------------------------EEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhhhhh
Confidence            6543221                        5799999999999999999999999999999999999999988665

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.5e-42  Score=330.29  Aligned_cols=219  Identities=24%  Similarity=0.324  Sum_probs=186.9

Q ss_pred             CCceEEEEecCCCCCcHHHHHHHHHhcC-CCcc--ccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCC
Q 018273          127 CAPKILITTCRFNSNRGPAFISELLSVI-PNSH--YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG  203 (358)
Q Consensus       127 ~~PKiLITTSr~pS~r~r~f~kdL~~v~-Pns~--~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~G  203 (358)
                      ..|.|+|.+++-....+.+|..||+.+| ||+.  ...|+.++|||++.+|..+|+|||+|++.+..+. +|+|+++|.|
T Consensus        24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~nl-slki~R~PqG  102 (405)
T KOG2963|consen   24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTETNL-SLKIARTPQG  102 (405)
T ss_pred             cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccCce-eEEEEecCCC
Confidence            4799999999999999999999999999 9975  5778999999999999999999999999998865 6999999999


Q ss_pred             ceEEEEEeceeehhhhccCCC-------CCCCCceeeecCCCCc---hhHHHHHHHHhcCCC-CCC----CCCCeEEEEE
Q 018273          204 PTAHFKLSKLVLRKDIKNHGN-------PTGHIPELVLNNFATR---LGHRVGRLIQSLFPQ-SPE----FRGRRVVTFH  268 (358)
Q Consensus       204 PT~~FkI~n~~l~kdi~~~g~-------~~~~~P~LIlnnF~t~---lg~~i~~mf~~LFP~-~p~----~~~rRVvtF~  268 (358)
                      ||++|+|..|+|.+||.....       .+.|+|+||||||++.   +-++++.|||+|||+ ++.    .+++||++++
T Consensus       103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllin  182 (405)
T KOG2963|consen  103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLIN  182 (405)
T ss_pred             CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEe
Confidence            999999999999999987531       2689999999999954   668999999999999 343    3799999999


Q ss_pred             e--cCCeEEEEeeeeEEEeccCCC---------------------------------C-CCCCccccchhhh--------
Q 018273          269 N--QRDFIFFRHHRYIFETKESKG---------------------------------S-DANGKKAKDAKSE--------  304 (358)
Q Consensus       269 n--q~d~I~FRhhrY~~~~~~~~~---------------------------------~-~~s~s~~~d~~~~--------  304 (358)
                      +  +++.|.|||  |.|+....+.                                 + ++|+|++++++.-        
T Consensus       183 yn~dt~eIdmRH--ysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~  260 (405)
T KOG2963|consen  183 YNRDTGEIDMRH--YSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDV  260 (405)
T ss_pred             cCCCCCeeeeee--eEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccc
Confidence            6  567999999  6776544320                                 3 5788887766531        


Q ss_pred             ----------h----ccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCC
Q 018273          305 ----------K----TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPE  348 (358)
Q Consensus       305 ----------~----~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~  348 (358)
                                .    ...++.+|+|+||||||||+|++|++|+|.|++.+|+|+.|++
T Consensus       261 ~~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~  318 (405)
T KOG2963|consen  261 KEEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTE  318 (405)
T ss_pred             hhhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCH
Confidence                      0    1123556899999999999999999999999999999999985

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=5.5e-41  Score=303.61  Aligned_cols=179  Identities=41%  Similarity=0.650  Sum_probs=80.8

Q ss_pred             EEecCCCCCcHHHHHHHHHhcC-CCccccccccc-cHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEEEEE
Q 018273          133 ITTCRFNSNRGPAFISELLSVI-PNSHYYKRGTY-DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL  210 (358)
Q Consensus       133 ITTSr~pS~r~r~f~kdL~~v~-Pns~~~~R~k~-~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~FkI  210 (358)
                      ||||++||.++++|++||+.+| |||.+.+|++. .+++++++|..++|+++++|++++++|++|||+++|+|||++|.|
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I   80 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI   80 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence            7999999999999999999999 99999999987 999999999999999999999999999999999999999999999


Q ss_pred             eceeehhhhccCCC-CCCCCceeeecCCCCch---hHHHHHHHHhcCCCC-----CCCCCCeEEEEEecCCe-EEEEeee
Q 018273          211 SKLVLRKDIKNHGN-PTGHIPELVLNNFATRL---GHRVGRLIQSLFPQS-----PEFRGRRVVTFHNQRDF-IFFRHHR  280 (358)
Q Consensus       211 ~n~~l~kdi~~~g~-~~~~~P~LIlnnF~t~l---g~~i~~mf~~LFP~~-----p~~~~rRVvtF~nq~d~-I~FRhhr  280 (358)
                      .||++++|+++... +.+++|+|||+||.+++   ++++++||++|||..     +...++|||+|++++|. |||||  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~--  158 (191)
T PF04427_consen   81 ENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRH--  158 (191)
T ss_dssp             EEEE-HHHHT-------S---EEEEE------------------------------------------------------
T ss_pred             EeEEEhhHhcccccCCCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            99999999987543 45788999999998766   899999999999993     23579999999999999 99999  


Q ss_pred             eEEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEe
Q 018273          281 YIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL  329 (358)
Q Consensus       281 Y~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI  329 (358)
                      |++.......                .+-...|+|+||||||||+|++|
T Consensus       159 Yi~~~~~~~~----------------~~~~~~v~L~EiGPr~~l~l~kI  191 (191)
T PF04427_consen  159 YIFKSGSKNP----------------KKLLPRVELVEIGPRFTLKLRKI  191 (191)
T ss_dssp             -------------------------------------------------
T ss_pred             cccccccccc----------------cccccccccccccccccccccCC
Confidence            5221110000                00002369999999999999987

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>smart00879 Brix Brix domain

Probab=100.00  E-value=1.8e-37  Score=276.57  Aligned_cols=170  Identities=46%  Similarity=0.717  Sum_probs=150.5

Q ss_pred             EEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEec--CCCCceEEEeecCCCceEEEE
Q 018273          132 LITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN--RREPDALLIIGLPDGPTAHFK  209 (358)
Q Consensus       132 LITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~--r~~p~~L~I~~lP~GPT~~Fk  209 (358)
                      |||||++||.++++|++||+.++|++.+..|+++.+.+++++|...+.+++|++.|.  +++|++|||+++|+|||++|.
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~   80 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK   80 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence            699999999999999999999999999999999999999999999977777777777  899999999999999999999


Q ss_pred             Eeceeehhhhcc--CCC-CCCCCceeeecCCCCchhHHHHHHHHhcCCCCCCC-----CCCeEEEEEecCCeEEEEeeee
Q 018273          210 LSKLVLRKDIKN--HGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF-----RGRRVVTFHNQRDFIFFRHHRY  281 (358)
Q Consensus       210 I~n~~l~kdi~~--~g~-~~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~-----~~rRVvtF~nq~d~I~FRhhrY  281 (358)
                      |.+|.+.+|+..  .++ ...++|+||||||.+.+|++++.||+.|||..+..     ..+|||+|++++|.||||||+|
T Consensus        81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i  160 (180)
T smart00879       81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI  160 (180)
T ss_pred             EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEE
Confidence            999999999987  334 35789999999999999999999999999985443     5799999999999999999776


Q ss_pred             EEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeE
Q 018273          282 IFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL  324 (358)
Q Consensus       282 ~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftL  324 (358)
                      .+.....                       ++.|+||||||+|
T Consensus       161 ~~~~~~~-----------------------~v~l~eiGPr~~l  180 (180)
T smart00879      161 KFGKKKP-----------------------RVELQEIGPRFTL  180 (180)
T ss_pred             EccCCCC-----------------------ceEEEEecCCccC
Confidence            5511111                       2699999999986

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=100.00  E-value=1.1e-36  Score=277.96  Aligned_cols=182  Identities=37%  Similarity=0.576  Sum_probs=173.3

Q ss_pred             CceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeec-CCCceE
Q 018273          128 APKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL-PDGPTA  206 (358)
Q Consensus       128 ~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~l-P~GPT~  206 (358)
                      .||+||||||+||.++++||++|..+|||+.+..||++++.++.+.|...|+++++|++|.+|+|..|.++++ |.||++
T Consensus         1 ~~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~   80 (191)
T COG2136           1 MPKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTF   80 (191)
T ss_pred             CCcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceE
Confidence            3899999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             EEEEeceeehhhhccCCC-CCCCCceeeecCCCCchh-HHHHHHHHhc----CCCCCCCCCCeEEEEEecCCeEEEEeee
Q 018273          207 HFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLG-HRVGRLIQSL----FPQSPEFRGRRVVTFHNQRDFIFFRHHR  280 (358)
Q Consensus       207 ~FkI~n~~l~kdi~~~g~-~~~~~P~LIlnnF~t~lg-~~i~~mf~~L----FP~~p~~~~rRVvtF~nq~d~I~FRhhr  280 (358)
                      .|+|+|+++.+++..++. ...|.|++|+|||++.+| +.++++|+.+    |++.|.....+|+++++++++++||+|+
T Consensus        81 ~f~l~~v~l~re~~~~~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~~~  160 (191)
T COG2136          81 SFKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHR  160 (191)
T ss_pred             EEEEecceEEEeccccCCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEeee
Confidence            999999999999999987 678999999999999999 8999999999    9998888899999999999999999999


Q ss_pred             eEEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcC
Q 018273          281 YIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF  334 (358)
Q Consensus       281 Y~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f  334 (358)
                      |.+..  ..                       ++++|+||||+|+|..++.|+.
T Consensus       161 ~~~~~--~~-----------------------~~~~~vgp~~~~r~~~~~~g~~  189 (191)
T COG2136         161 RVFEE--DG-----------------------IGLEEVGPRLTLRLWRMEDGRG  189 (191)
T ss_pred             eEeee--ee-----------------------eeEEEeCceeeeehhhhhhccc
Confidence            99975  22                       4899999999999999999964

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.8e-37  Score=284.69  Aligned_cols=199  Identities=23%  Similarity=0.361  Sum_probs=174.6

Q ss_pred             hhhcCCCceEEEEecCCCCCcHHHHHHHHHhcCCCcccccc--ccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEee
Q 018273          122 ILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKR--GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIG  199 (358)
Q Consensus       122 ~f~~~~~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R--~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~  199 (358)
                      -|.+  +.+|||++||+.|.++|+||+||..++||+....+  .+..+..|.++|...+|+.+++|..++....||||+.
T Consensus        45 ~w~N--K~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~  122 (299)
T KOG2971|consen   45 KWKN--KERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSN  122 (299)
T ss_pred             cccc--ceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEec
Confidence            3544  67999999999999999999999999999986554  4678999999999999999999999999999999999


Q ss_pred             cCCCceEEEEEeceeehhhhccCCCCC-CCCceeeec-CCCC-chhHHHHHHHHhcCCCCCC------CCCCeEEEEEec
Q 018273          200 LPDGPTAHFKLSKLVLRKDIKNHGNPT-GHIPELVLN-NFAT-RLGHRVGRLIQSLFPQSPE------FRGRRVVTFHNQ  270 (358)
Q Consensus       200 lP~GPT~~FkI~n~~l~kdi~~~g~~~-~~~P~LIln-nF~t-~lg~~i~~mf~~LFP~~p~------~~~rRVvtF~nq  270 (358)
                      +|+|||+.|.|.|+++|.|++..|||. +++|+|.|+ +|.+ ++-+++++||.+.|.. |.      -..++|++|+.-
T Consensus       123 ~p~GpSvkFlv~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgi-P~~hrkSkpf~Dhvf~Fsi~  201 (299)
T KOG2971|consen  123 SPNGPSVKFLVHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGI-PKHHRKSKPFVDHVFTFSIL  201 (299)
T ss_pred             CCCCCceEEehhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCC-CCCCcccCCccceEEEEEEe
Confidence            999999999999999999999999996 789999998 6995 6668999999999966 33      246899999999


Q ss_pred             CCeEEEEeeeeEEEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCCCC
Q 018273          271 RDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMD  350 (358)
Q Consensus       271 ~d~I~FRhhrY~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~~~  350 (358)
                      +|.||||+  |+|...+.                        +.|+||||||+|.+++|.+|+|+|   ...|.+..|..
T Consensus       202 D~~IWfRn--yqI~~~ed------------------------~~L~EiGPRfvl~~ikif~gsFgG---~~lYenp~yvs  252 (299)
T KOG2971|consen  202 DGKIWFRN--YQISEEED------------------------KTLIEIGPRFVLNVIKIFEGSFGG---PTLYENPKYVS  252 (299)
T ss_pred             cCeEEEEE--eEeccccC------------------------cceeeeccHHHHhHHHHHhccCCC---ceeecCccccC
Confidence            99999999  88864332                        389999999999999999999974   56677766654


Q ss_pred             cc
Q 018273          351 TS  352 (358)
Q Consensus       351 ~~  352 (358)
                      .+
T Consensus       253 pn  254 (299)
T KOG2971|consen  253 PN  254 (299)
T ss_pred             HH
Confidence            44

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=8e-32  Score=245.44  Aligned_cols=196  Identities=21%  Similarity=0.349  Sum_probs=169.6

Q ss_pred             CceEEEEecCCCCCcHHHHHHHHHhcCCCcccccc--ccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCce
Q 018273          128 APKILITTCRFNSNRGPAFISELLSVIPNSHYYKR--GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT  205 (358)
Q Consensus       128 ~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R--~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT  205 (358)
                      ++++||++||+++.+.|+|++||..++|+|....+  -+..+.++.++|...+|+++++|..++....+||+++.|+|||
T Consensus        30 kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGpt  109 (283)
T COG5154          30 KQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGPT  109 (283)
T ss_pred             cceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCCe
Confidence            78999999999999999999999999999987666  3778999999999999999999999999999999999999999


Q ss_pred             EEEEEeceeehhhhccCCCCC-CCCceeeecC-CCC-chhHHHHHHHHhcCCCCCC-----CCCCeEEEEEecCCeEEEE
Q 018273          206 AHFKLSKLVLRKDIKNHGNPT-GHIPELVLNN-FAT-RLGHRVGRLIQSLFPQSPE-----FRGRRVVTFHNQRDFIFFR  277 (358)
Q Consensus       206 ~~FkI~n~~l~kdi~~~g~~~-~~~P~LIlnn-F~t-~lg~~i~~mf~~LFP~~p~-----~~~rRVvtF~nq~d~I~FR  277 (358)
                      +.|+|+|+++|.|+...||+. +++|.|.|+- |.+ |+-+.++++|++.|..-|.     -..++|++|...+|.||||
T Consensus       110 vkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~DgkIWvR  189 (283)
T COG5154         110 VKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVR  189 (283)
T ss_pred             EEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEecCeEEEE
Confidence            999999999999999999986 7899999985 985 6678999999999976221     2468999999999999999


Q ss_pred             eeeeEEE-eccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeecCcCCCCCceeEEEeCCC
Q 018273          278 HHRYIFE-TKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPE  348 (358)
Q Consensus       278 hhrY~~~-~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~G~f~~~~g~~ew~~k~~  348 (358)
                      .  |.|. ..+.+                  .+.  |+|.||||||+|..++|.+|+|+|.   ..|.+.++
T Consensus       190 ~--YeI~re~ed~------------------~~d--v~L~EIGPRfVmtvi~iLEgsFgGp---~iYkn~~~  236 (283)
T COG5154         190 C--YEIGRENEDK------------------SKD--VKLEEIGPRFVMTVIKILEGSFGGP---AIYKNETF  236 (283)
T ss_pred             E--Eeeccccccc------------------ccc--ceeeeeccHHHHHHHHHHHhccCCc---eeeecccc
Confidence            9  8884 21111                  111  6899999999999999999999754   45555544

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.96  E-value=7.7e-29  Score=228.08  Aligned_cols=125  Identities=20%  Similarity=0.343  Sum_probs=117.5

Q ss_pred             EEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCC---CceEE
Q 018273          131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPD---GPTAH  207 (358)
Q Consensus       131 iLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~---GPT~~  207 (358)
                      ||||||++||+++++||+||..+||||.+++||+++|++|++.|..+|+|++|||+|++|+|++|.|+|||.   |||++
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~   81 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY   81 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence            799999999999999999999999999999999999999999999999999999999999999999999975   55999


Q ss_pred             EEEeceeehhhh--ccCCCCCCCCceeeecCCCCchhH-HHHHHHHhcCCC
Q 018273          208 FKLSKLVLRKDI--KNHGNPTGHIPELVLNNFATRLGH-RVGRLIQSLFPQ  255 (358)
Q Consensus       208 FkI~n~~l~kdi--~~~g~~~~~~P~LIlnnF~t~lg~-~i~~mf~~LFP~  255 (358)
                      |+|+||.+.+||  ++++.++.|.|+||.+||.+.+|. ..|..+.+.+.-
T Consensus        82 FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi  132 (208)
T PRK03972         82 LYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVGLDHMAFAQVFAELTGG  132 (208)
T ss_pred             EEEccEEEHHHcccCCCCCccccccEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence            999999999999  568888999999999999999986 667777777776

>PRK00933 ribosomal biogenesis protein; Validated

Probab=99.32  E-value=1.7e-11  Score=110.14  Aligned_cols=114  Identities=20%  Similarity=0.410  Sum_probs=87.4

Q ss_pred             EEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEEEEE
Q 018273          131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL  210 (358)
Q Consensus       131 iLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~FkI  210 (358)
                      ++||||++||.++++||++|..++ |+.|++|++.++++|++.|..   .+++||+|++++|++|.|+.+-..+.+.+.|
T Consensus         1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~   76 (165)
T PRK00933          1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL   76 (165)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence            489999999999999999999999 999999999999999987654   4999999999999999999998778777765


Q ss_pred             eceeehhhhccCCCCCCCCceeeecCCCCchhHHHHHHHHhcC
Q 018273          211 SKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLF  253 (358)
Q Consensus       211 ~n~~l~kdi~~~g~~~~~~P~LIlnnF~t~lg~~i~~mf~~LF  253 (358)
                       ++.+..++... ......|.  .+++... +.-++++|....
T Consensus        77 -~v~~~~~~~~~-~~~~~~p~--~~~~~~~-~~~~~e~f~~~l  114 (165)
T PRK00933         77 -SVKLQREISGP-VFKNRRPI--KSAFDVG-GDELAELFDYFL  114 (165)
T ss_pred             -EeeeecccCcc-eeecCCCc--ccchhhH-HHHHHHHHHHHH
Confidence             46777666432 22233443  3333322 555666665543

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=9.2e-08  Score=91.60  Aligned_cols=171  Identities=17%  Similarity=0.249  Sum_probs=126.1

Q ss_pred             CcHHHHHHHHHhc-CCCccccccccc-----cHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCc---eEEEEEe
Q 018273          141 NRGPAFISELLSV-IPNSHYYKRGTY-----DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP---TAHFKLS  211 (358)
Q Consensus       141 ~r~r~f~kdL~~v-~Pns~~~~R~k~-----~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GP---T~~FkI~  211 (358)
                      ..+..-|.||-.+ .|.+..++|+..     .-.-+..+...+.|+-+++-+-+++.|+.|+|.+.=++-   .+-+.|.
T Consensus        40 ~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~  119 (307)
T KOG3031|consen   40 KTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIE  119 (307)
T ss_pred             hHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHHhhh
Confidence            4556667777665 388877777631     123356677778888888888889999999999887664   4678899


Q ss_pred             ceeehhhhccCCCCCCCCceeeecCC--C-CchhHHHHHHHHhcCCCCC-C---C-CCCeEEEEEecCCe-EEEEeeeeE
Q 018273          212 KLVLRKDIKNHGNPTGHIPELVLNNF--A-TRLGHRVGRLIQSLFPQSP-E---F-RGRRVVTFHNQRDF-IFFRHHRYI  282 (358)
Q Consensus       212 n~~l~kdi~~~g~~~~~~P~LIlnnF--~-t~lg~~i~~mf~~LFP~~p-~---~-~~rRVvtF~nq~d~-I~FRhhrY~  282 (358)
                      ||...+|+...+-..+..|.|+|+|+  . ++--+++..+|...|--.+ +   . .-++|+.|.-.++. |+||||  .
T Consensus       120 ~ykslsdF~~~k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y--~  197 (307)
T KOG3031|consen  120 NYKSLSDFKAAKITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVY--R  197 (307)
T ss_pred             hhhhhhhhhccCCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeee--e
Confidence            99999999886645578999999984  4 4555899999999997621 1   2 35799999987765 999994  4


Q ss_pred             EEeccCCCCCCCCccccchhhhhccccccccceeeeccceeEEEEEeec
Q 018273          283 FETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQH  331 (358)
Q Consensus       283 ~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~v~L~EIGPRftLkL~kI~~  331 (358)
                      ........                  .-=++.|.|+||++.|.+++..-
T Consensus       198 lklkKs~~------------------~~PRiELeE~GPsldf~irR~~~  228 (307)
T KOG3031|consen  198 LKLKKSGT------------------RTPRIELEEMGPSLDFEIRRTKL  228 (307)
T ss_pred             eeeeeccC------------------CCCceehhhcCCceeEEEEeccC
Confidence            54333221                  01136899999999999998764

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.0023  Score=60.87  Aligned_cols=142  Identities=19%  Similarity=0.286  Sum_probs=97.2

Q ss_pred             HHHHhCCCceEEEEEecCCCCceEEEeecCCC---ceEEEEEeceeehhhhccCCCCCCCCceeeecC--CCC-chhHHH
Q 018273          172 EYAKKKDFTSIIVVHTNRREPDALLIIGLPDG---PTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNN--FAT-RLGHRV  245 (358)
Q Consensus       172 ~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~G---PT~~FkI~n~~l~kdi~~~g~~~~~~P~LIlnn--F~t-~lg~~i  245 (358)
                      -+...+.|.-.+++...++.+..|+|.+.=+=   -.+-|.|.+|....|....+...+-.|.++|.|  |++ |.-++|
T Consensus        77 ffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~~~~g~Kpmv~fQg~~fd~hp~yr~i  156 (316)
T COG5106          77 FFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECAGPELGMKPMVVFQGINFDAHPTYRRI  156 (316)
T ss_pred             HHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhccCCccCCceEEEEeccccccchHHHHH
Confidence            34556677777888888888888988776432   135678889999999888776678899999985  874 556789


Q ss_pred             HHHHHhcCCCCCCC-----CCCeEEEEEecCC----e----EEEEeeeeEEEeccCCCCCCCCccccchhhhhccccccc
Q 018273          246 GRLIQSLFPQSPEF-----RGRRVVTFHNQRD----F----IFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVI  312 (358)
Q Consensus       246 ~~mf~~LFP~~p~~-----~~rRVvtF~nq~d----~----I~FRhhrY~~~~~~~~~~~~s~s~~~d~~~~~~~~~~i~  312 (358)
                      ..+|-..|--.+..     .-..|+....+.+    +    +.||-  |....-...                  +.--+
T Consensus       157 ksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRV--yk~k~~kt~------------------~~lpr  216 (316)
T COG5106         157 KSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRV--YKTKLLKTK------------------TNLPR  216 (316)
T ss_pred             HHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeee--eeccccccc------------------CCCCc
Confidence            99999988864421     1246666664332    3    46787  433211111                  00113


Q ss_pred             cceeeeccceeEEEEEeecCc
Q 018273          313 TRLQECGPRFTLKLVSLQHGT  333 (358)
Q Consensus       313 v~L~EIGPRftLkL~kI~~G~  333 (358)
                      +.|.|||||+.+++.+++--.
T Consensus       217 ~elee~GPrldf~i~R~~~~s  237 (316)
T COG5106         217 LELEECGPRLDFEIVRSYHCS  237 (316)
T ss_pred             eehhhcccceeeEEEeecCCC
Confidence            689999999999999988533

>PRK03972 ribosomal biogenesis protein; Validated

Probab=95.75  E-value=0.051  Score=50.94  Aligned_cols=76  Identities=24%  Similarity=0.299  Sum_probs=59.0

Q ss_pred             EEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeec------CCCc
Q 018273          131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL------PDGP  204 (358)
Q Consensus       131 iLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~l------P~GP  204 (358)
                      .+|||+.+++..+...++.+...+ +..|++|++.++.+|.   ...+..+++||.-+-..- .+.++++      |-||
T Consensus       107 ~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~~-~~~~~~~~~~~~~~~~~  181 (208)
T PRK03972        107 LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPRGM-AVNFYRLDVTKERPVGP  181 (208)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCCce-EEEEEEeccccccccCC
Confidence            589999999998888889888766 7788999999998776   445678888886654432 4666664      7799


Q ss_pred             eEEEEEe
Q 018273          205 TAHFKLS  211 (358)
Q Consensus       205 T~~FkI~  211 (358)
                      .+.+++-
T Consensus       182 ~~~~~~~  188 (208)
T PRK03972        182 LIFVKIW  188 (208)
T ss_pred             cEEEEEE
Confidence            9988864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	3e-64
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	2e-09
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2 Length = 217

 Score =  202 bits (515), Expect = 3e-64
 Identities = 32/190 (16%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 106 DDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTY 165
               + AG+               +IL+TT R  S R  +F+ +L + IP +  + RG Y
Sbjct: 11  SSGLVPAGSHMLGGKGRPSGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHY 70

Query: 166 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP-----TAHFKLSKLVLRKDIK 220
            ++++   A  +    I+VV   R  P  ++ +   +GP        F +  + L ++ +
Sbjct: 71  SMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERPDNIVSFIVKGVSLSRERR 129

Query: 221 NHGNPTGHIPELVL-----NNFATRLGHRVGRLIQSLFPQSPE--FRGRRVVTFHNQRDF 273
             G P+    E+++     +  A            +         +    + +   +   
Sbjct: 130 -WGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFHARLKPPEAAGYVEAVIESLDARTVA 188

Query: 274 IFFRHHRYIF 283
           + FR+     
Sbjct: 189 VTFRYGGAPV 198

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2 Length = 156

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 15/149 (10%)

Query: 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR 190
           +L+TT R  S R  +F   L  ++    Y  RG   L+ ++  A+      + VV     
Sbjct: 2   MLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHG 56

Query: 191 EPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQ 250
            P  +  +    G    + L                    + V  +        +  L+ 
Sbjct: 57  NPARITFL-DERGGERGYILFNPSFEMKK------PELADKAVRVSSCPPGSEGLCNLMG 109

Query: 251 SLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
               +S     R   +     ++ +    
Sbjct: 110 LEVDESS---SRDAWSIRTDEEYAWVMEL 135

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 19/49 (38%)

Query: 45 EKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIE 93
          EK++         KK++   KL A D+A           PA     T+E
Sbjct: 18 EKQAL--------KKLQASLKLYADDSA-----------PALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	100.0
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	99.86

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=100.00  E-value=1.2e-35  Score=275.03  Aligned_cols=147  Identities=16%  Similarity=0.179  Sum_probs=127.0

Q ss_pred             cccCCCCcchhhhhhhcCCCceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEec
Q 018273          109 ELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN  188 (358)
Q Consensus       109 e~~~~~~~def~~~f~~~~~PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~  188 (358)
                      +.+.++..|+|+   ++...||||||||++||.++++||+||..+|||+.|++|++++|++|++.|..++||++|||+|+
T Consensus        17 ~~~~~~g~~~~~---~~~~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~Rgk~sLkeL~e~a~~~~~tdlivV~e~   93 (217)
T 2cxh_A           17 AGSHMLGGKGRP---SGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGER   93 (217)
T ss_dssp             -------------------CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccccccCcccc---cCCCCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeecCCcCHHHHHHHHHhCCCCEEEEEEec
Confidence            334455568887   57889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEeecCCC---c-eEEEEEeceeehhhhccCCCC-CCCCceeeecCCCCchhHHHHHHHHhcCCCCCCCC
Q 018273          189 RREPDALLIIGLPDG---P-TAHFKLSKLVLRKDIKNHGNP-TGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFR  260 (358)
Q Consensus       189 r~~p~~L~I~~lP~G---P-T~~FkI~n~~l~kdi~~~g~~-~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~~  260 (358)
                      +++|++|||+|+|.|   | |++|+|+|+++++||+++|++ +.|+|+|+ |||++++|+++++||++|||. |.+.
T Consensus        94 rg~p~~L~~~hlP~G~~~P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~-~nF~t~~g~~i~~~f~~lFp~-P~~~  168 (217)
T 2cxh_A           94 RGNPGIIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA-RPLDSGVAVEFADAFVIAFHA-RLKP  168 (217)
T ss_dssp             TTEEEEEEEEECCSSSCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE-EESSSSTHHHHHHHHHHHHCC-BSSC
T ss_pred             CCCCcEEEEEECCCCCCCCcEEEEEEeeEEehhhhccCCCccCCCCceEE-eeecCchHHHHHHHHHHHcCC-CCCC
Confidence            999999999999999   9 999999999999999999976 57999999 999999999999999999999 7753

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=99.86  E-value=6e-22  Score=174.89  Aligned_cols=130  Identities=16%  Similarity=0.242  Sum_probs=109.5

Q ss_pred             eEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEEEE
Q 018273          130 KILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK  209 (358)
Q Consensus       130 KiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~Fk  209 (358)
                      |++||||++||.++++|+++|..+| |+.|++|++++|++|++.|...    +|||+|++|+|++|.|+|+|.|||++|+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~~f~   75 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERGYIL   75 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH-TCEECCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh-CCEEEeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEEEEE
Confidence            6899999999999999999999999 9999999999999999998543    9999999999999999999999999999


Q ss_pred             EeceeehhhhccCCCCCCCCceeeecCCCCchhHHHHHHHHhcCCCCCCCCCCeEEEEEecCCeE
Q 018273          210 LSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFI  274 (358)
Q Consensus       210 I~n~~l~kdi~~~g~~~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~~~rRVvtF~nq~d~I  274 (358)
                      + |+.+.+|++...      |..|...+.++.+..++.+|.  ||. .+....+|++|....+++
T Consensus        76 ~-nv~l~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~i~~~~~~~  130 (156)
T 1w94_A           76 F-NPSFEMKKPELA------DKAVRVSSCPPGSEGLCNLMG--LEV-DESSSRDAWSIRTDEEYA  130 (156)
T ss_dssp             E-EEEECSSCCCCS------SCCCEESCCCTTCHHHHHHHT--CEE-CCSCCTTEEEEECCSSSS
T ss_pred             E-ceEEcccCcccC------CceEEEecCChhHHHHHHHHC--CCc-cCCCCceEEEEEeCCCcE
Confidence            8 999999987321      445666667888888888776  344 223446788887655553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	8e-55
d1w94a1	154	c.51.1.2 (A:1-154) Probable ribosomal biogenesis p	1e-42

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score =  175 bits (446), Expect = 8e-55
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 11/164 (6%)

Query: 130 KILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNR 189
           +IL+TT R  S R  +F+ +L + IP +  + RG Y ++++   A  +    I+VV   R
Sbjct: 3   RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERR 62

Query: 190 REPDALLIIGLPDGP-----TAHFKLSKLVLRKDIK----NHGNPTGHIPELVLNNFATR 240
             P  ++ +   +GP        F +  + L ++ +    +       +   + +  A  
Sbjct: 63  GNPG-IIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVE 121

Query: 241 LGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFE 284
                     +     PE  G       +          RY   
Sbjct: 122 FADAFVIAFHARLKP-PEAAGYVEAVIESLDARTVAVTFRYGGA 164

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  143 bits (362), Expect = 1e-42
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 17/150 (11%)

Query: 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR 190
           +L+TT R  S R  +F   L  ++    Y  RG   L+ ++  A       + VV     
Sbjct: 1   MLLTTSRKPSQRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEA----RGPVAVVSERHG 55

Query: 191 EPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQ 250
            P  +  +    G    + L                   PEL                + 
Sbjct: 56  NPARITFL-DERGGERGYILFNPSFEMKK----------PELADKAVRVSSCPPGSEGLC 104

Query: 251 SLFPQSPEFRGRR-VVTFHNQRDFIFFRHH 279
           +L     +    R   +     ++ +    
Sbjct: 105 NLMGLEVDESSSRDAWSIRTDEEYAWVMEL 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	100.0
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	100.0

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=8.1e-46  Score=332.50  Aligned_cols=151  Identities=20%  Similarity=0.292  Sum_probs=145.3

Q ss_pred             ceEEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCc----
Q 018273          129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP----  204 (358)
Q Consensus       129 PKiLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GP----  204 (358)
                      -|||||||++||+++++||+||+.+||||.+++|++++|+||+++|..+||||+|||+|++|+| +|+++|+|.||    
T Consensus         2 ~kvLITTSr~ps~~~r~f~kdL~~v~Pns~~~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~~~   80 (180)
T d2cxha1           2 YRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERPD   80 (180)
T ss_dssp             CEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhCCCCEEeecCCCcHHHHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCCcc
Confidence            3899999999999999999999999999999999999999999999999999999999999999 59999999999    


Q ss_pred             -eEEEEEeceeehhhhcc----CCCCCCCCceeeecCCCCchhHHHHHHHHhcCCCCCCCCCCeEEEEEecCCeEEEEee
Q 018273          205 -TAHFKLSKLVLRKDIKN----HGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH  279 (358)
Q Consensus       205 -T~~FkI~n~~l~kdi~~----~g~~~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~~~rRVvtF~nq~d~I~FRhh  279 (358)
                       |++|+|+||++++|+..    ++..+.|.|++|||||+|+||+++++||+++||+ |++.+++||+||||+||||||+|
T Consensus        81 ~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~lilnnf~t~Lg~~~~~~f~~lf~~-p~~~~~~vvt~~n~~d~if~~~~  159 (180)
T d2cxha1          81 NIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFHARLKP-PEAAGYVEAVIESLDARTVAVTF  159 (180)
T ss_dssp             EEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSSSTHHHHHHHHHHHHCCBSSC-CSSSCEEEEEEEEEETTEEEEEE
T ss_pred             ceEEEEEEEEEEehhhccccCCCCCCccccchhHhcccchHHHHHHHHHHHhhCCC-chhcCcEEEEEEecCCeEEEEEE
Confidence             99999999999999964    4667889999999999999999999999999998 99999999999999999999999


Q ss_pred             ee
Q 018273          280 RY  281 (358)
Q Consensus       280 rY  281 (358)
                      +|
T Consensus       160 ~~  161 (180)
T d2cxha1         160 RY  161 (180)
T ss_dssp             EC
T ss_pred             ec
Confidence            88

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=3.1e-37  Score=269.34  Aligned_cols=133  Identities=17%  Similarity=0.208  Sum_probs=126.8

Q ss_pred             EEEEecCCCCCcHHHHHHHHHhcCCCccccccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeecCCCceEEEEE
Q 018273          131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL  210 (358)
Q Consensus       131 iLITTSr~pS~r~r~f~kdL~~v~Pns~~~~R~k~~Lkdiv~~A~~~~~T~lIi~~E~r~~p~~L~I~~lP~GPT~~FkI  210 (358)
                      ||||||++||+++++||+||..+|||+ +++||++++++|++.|    +|++|||+|++|+|++|.| |+|.|||++|+|
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~P~~-~~~Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~f~l   74 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERGYIL   74 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHHTCE-ECCCTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEEEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHhCCCe-EEEcCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEEEEE
Confidence            699999999999999999999999986 8999999999999887    7999999999999999988 999999999999


Q ss_pred             eceeehhhhccCCCCCCCCceeeecCCCCchhHHHHHHHHhcCCCCCCCCCCe-EEEEEecCCeEEEEee
Q 018273          211 SKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRR-VVTFHNQRDFIFFRHH  279 (358)
Q Consensus       211 ~n~~l~kdi~~~g~~~~~~P~LIlnnF~t~lg~~i~~mf~~LFP~~p~~~~rR-VvtF~nq~d~I~FRhh  279 (358)
                      +||++.+|          +|+||+|||.+++|+.++++|+++||..|+++++| ||+|+||+|+||++||
T Consensus        75 ~~v~l~~e----------~p~li~~~f~t~lg~~v~~~L~~lf~~~~~~~~~~~~itf~n~~d~i~~~~~  134 (154)
T d1w94a1          75 FNPSFEMK----------KPELADKAVRVSSCPPGSEGLCNLMGLEVDESSSRDAWSIRTDEEYAWVMEL  134 (154)
T ss_dssp             EEEEECSS----------CCCCSSCCCEESCCCTTCHHHHHHHTCEECCSCCTTEEEEECCSSSSEEEEE
T ss_pred             eeEEcccc----------CCcCcccccccccchhHHHHHHHHcCCChhhcceeeEEEEecCCCEEEEEEE
Confidence            99998765          79999999999999999999999999988888876 9999999999999996