Citrus Sinensis ID: 018276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKKKWWKF
Secondary Structure (PSIPRED)
cccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEcccccccccEEEEEEcccccccEEEEcccccccccHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccHHHHHcHHHcccccccccccccccEEEEcccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEcccHHHHHHccHHHccHccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHccccccccEEHHHHHHHHcccEEEEEEccccEEEEEcccccccccEEEEEEEcccccccEccccccccccccccccEEcc
Coil and Loop (DISEMBL)
minmityeqdpdVLRWGLHQLLDictlsnsgsqnvitrydrdssqvgyvrecysetelayveNDEVIAHVLQEEFSQVAAAEasgsinpekssileqdrvsplgiynnsvcendrsaadgsgkneeemddsgrmveadyqskgekveleydedNMEDLLHqldttdessvidgelgkrlnqmvpvphipkingdipspdeeiSDHQRMLDRLQLYDLvenkvqgdgncqfrslsdqlyrspehhMFVRQQVVNQLKahpeiyegyvpMAYSDYLKKMnksgewgdhVTLQAAADSYGVKVFVLTSfkdtcyieilphvpkskRVIFLSFWAEVHynsiypegelpllddkkkkkwwkf
Flexible Loop (DISEMBL)
MINMITYEQDPDVLRWGLHQLLDICTlsnsgsqnvitrydrdssqvgYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEAsgsinpekssileqDRVSPLGIynnsvcendrsaadgsgkneeemddsgrmveADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSiypegelpllddkkkkkwwkf
Low Complexity Region (SEG)
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPllddkkkkkwwkF
Disordered region (IsUnstruct)
****ITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFS*************************************************************************************************************************************DRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPE*****************
Disordered Region (DISOPRED)
**NMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQE**********************************************************************************************************************************DHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEI****PKSKRVIFLSFWAEVHYNSIYP****************KF
Disordered Region (DISEMBL)
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDR****************GRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKKKWWKF
Disordered Region (DISPRO)
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPL*************************************************DNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKK**W**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKKKWWKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q54P70	766	OTU domain-containing pro	yes	no	0.407	0.190	0.369	6e-20
Q196X6	844	Putative ubiquitin thioes	N/A	no	0.469	0.199	0.284	9e-08
P22856	867	Putative ubiquitin thioes	N/A	no	0.360	0.148	0.286	1e-07
Q08BW0	560	OTU domain-containing pro	yes	no	0.337	0.216	0.278	3e-07
Q96G74	571	OTU domain-containing pro	yes	no	0.340	0.213	0.253	5e-07
Q7ZX21	513	OTU domain-containing pro	N/A	no	0.385	0.269	0.25	8e-07
Q01804	1113	OTU domain-containing pro	no	no	0.382	0.123	0.258	9e-07
Q2YDU3	566	OTU domain-containing pro	no	no	0.318	0.201	0.255	2e-06
Q3U2S4	566	OTU domain-containing pro	yes	no	0.318	0.201	0.255	3e-06
Q6GL44	518	OTU domain-containing pro	no	no	0.318	0.220	0.255	3e-06

>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 11/157 (7%)

Query: 195 IPSPDEEISDHQRMLDRLQLYDLVENK-VQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVN 253
           +P   E     QR+ +RL+LY L  +K + GDGNCQ  +LSDQLY    H   VR+ +V+
Sbjct: 608 LPQSKEVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVD 667

Query: 254 QLKAHPE--------IYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTS 305
            L+ + +        I +      + DY   M+K+G WGDH+TL AAA+ +G K+ +++S
Sbjct: 668 WLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISS 727

Query: 306 F--KDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYP 340
              +   +IEI+P    + +V+ LS +AE HY S+ P
Sbjct: 728 VESQSNFFIEIIPSKILNDKVLLLSHYAEFHYGSLCP 764

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q196X6|VF232_IIV3 Putative ubiquitin thioesterase 232R OS=Invertebrate iridescent virus 3 GN=IIV3-084L PE=3 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 25/193 (12%)

Query: 169 SVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENK------V 222
           SV+D +L ++   + P+P +  +  D PS   E+  ++       L  L ++K      V
Sbjct: 540 SVVDPQLSRKT--LKPLPSL--VVTDQPSKQPELPKYKGRTPYTDLEQLAQSKGYTVKQV 595

Query: 223 QGDGNCQFRSL--SDQLYRSPEH-HMFVRQQVVNQLKAHPE---IYEGYVPM-------A 269
            GDGNC FRS+  S +  R  +  H  +RQ VV+ L+ +PE   +Y  YV         +
Sbjct: 596 SGDGNCLFRSVCKSIRALRGEKFTHRQLRQMVVDYLRENPEFLQVYLEYVARQRDNSLPS 655

Query: 270 YSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSF 329
              YL +M+K G WGD + L+  ++   V+  +L    +T   +++        VI L +
Sbjct: 656 TEQYLSEMSKCGTWGDLICLKTLSEILKVQFNLL--ILNTKQFQMVSSQDDYPDVIPLGY 713

Query: 330 WAEVHYNSIYPEG 342
               HY S+ P G
Sbjct: 714 IDNYHYTSLVPIG 726

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.

Psorophora ferox (taxid: 7183)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus GN=L96 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 21/150 (14%)

Query: 208 MLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPE---HHMFVRQQVVNQLKAHPEIYEG 264
           +L R + Y ++   V+GDGNC FR++   L  +      H  +R QVV  L +H E  E 
Sbjct: 599 ILARRRGYKVIP--VKGDGNCLFRAVGKSLRLNQNIKYSHEDLRAQVVTYLTSHKEFLEP 656

Query: 265 YV----------PMAYSD----YLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTC 310
           Y+          P  Y+     Y+K ++K G WGD + L+  ++   VK  +L    +T 
Sbjct: 657 YLEYVTESGDTTPQEYAKNVERYIKNISKPGTWGDFICLRVLSEILKVKFNLL--ILNTR 714

Query: 311 YIEILPHVPKSKRVIFLSFWAEVHYNSIYP 340
             +++ +    K +I L F  + HY ++ P
Sbjct: 715 NFQVISNNDTFKPLIPLGFIDDYHYTALTP 744

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (By similarity). May be involved in TIV genomic DNA packaging in a manner related to the Gag polyproteins of the mammalian viruses.

Tipula (taxid: 41043)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
            V  K++ DG C FR+++DQ+Y   + H  VR+  ++ L  + + +  YV   ++ Y+ +
Sbjct: 211 FVIKKMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 270

Query: 277 MNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYN 336
             K+   G+H+ +QA A+ Y   V V  S  +        H   +   I +S+   +HYN
Sbjct: 271 KRKNNCHGNHIEMQAMAEMYNRPVEVYQSGTEPINTFHGIHQ-NNDEPIRVSYHRNIHYN 329

Query: 337 SI 338
           S+
Sbjct: 330 SV 331

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
            +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L  + + +  YV   ++ Y+ +
Sbjct: 213 FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 272

Query: 277 MNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHV----PKSKRVIFLSFWAE 332
             K+   G+H+ +QA A+ Y   V V      T  +E +             I +S+   
Sbjct: 273 KRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRN 332

Query: 333 VHYNSI 338
           +HYNS+
Sbjct: 333 IHYNSV 338

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 199 DEEISDHQRMLDRLQLYD---LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQL 255
           D + ++ Q +     L D    +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L
Sbjct: 145 DPDTAEQQELCFEKTLSDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYL 204

Query: 256 KAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEIL 315
             + + +  YV   ++ Y+ +  K+   G+H+ +QA A+ Y   V V     +   I   
Sbjct: 205 MKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEP--INTF 262

Query: 316 PHVPKSK-RVIFLSFWAEVHYNSI 338
             + K++   I +S+   +HYNS+
Sbjct: 263 HGIQKNEDEPIRVSYHRNIHYNSV 286

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 198 PDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKA 257
           P E+ +     L +L LY  +   V  DG+C FR++++Q+  S   H+ VR   ++ L+ 
Sbjct: 18  PREDATPMDAYLRKLGLYRKL---VAKDGSCLFRAVAEQVLHSQSRHVEVRMACIHYLRE 74

Query: 258 HPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPH 317
           + E +E ++  ++ +YLK++    EW   V + A +  Y  K F++    +    ++  +
Sbjct: 75  NREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMY-RKDFIIYREPNVSPSQVTEN 133

Query: 318 VPKSKRVIFLSFWAEVHYNSIYP 340
               K  + L F    HY+ +YP
Sbjct: 134 NFPEK--VLLCFSNGNHYDIVYP 154

Homo sapiens (taxid: 9606)

>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 15/129 (11%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
            +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L  + + +  YV   ++ Y+ +
Sbjct: 213 FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 272

Query: 277 MNKSGEWGDHVTLQAAADSYGVKVFV-------LTSFKDTCYIEILPHVPKSKRVIFLSF 329
             K+   G+H+ +QA A+ Y   V V       + +F      E  P        I +S+
Sbjct: 273 KRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEP--------IRVSY 324

Query: 330 WAEVHYNSI 338
              +HYNS+
Sbjct: 325 HRNIHYNSV 333

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 15/129 (11%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
            +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L  + + +  YV   ++ Y+ +
Sbjct: 213 FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 272

Query: 277 MNKSGEWGDHVTLQAAADSYGVKVFV-------LTSFKDTCYIEILPHVPKSKRVIFLSF 329
             K+   G+H+ +QA A+ Y   V V       + +F      E  P        I +S+
Sbjct: 273 KRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEP--------IRVSY 324

Query: 330 WAEVHYNSI 338
              +HYNS+
Sbjct: 325 HRNIHYNSV 333

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 15/129 (11%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
            +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L  + + +  YV   ++ Y+ +
Sbjct: 171 FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 230

Query: 277 MNKSGEWGDHVTLQAAADSYGVKVFV-------LTSFKDTCYIEILPHVPKSKRVIFLSF 329
             K+   G+H+ +QA A+ Y   V V       + +F      E  P        I +S+
Sbjct: 231 KRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEP--------IRVSY 282

Query: 330 WAEVHYNSI 338
              +HYNS+
Sbjct: 283 HRNIHYNSV 291

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
356576239	362	PREDICTED: uncharacterized protein LOC10	0.966	0.955	0.612	1e-115
296085991	325	unnamed protein product [Vitis vinifera]	0.888	0.978	0.606	1e-112
224109808	353	predicted protein [Populus trichocarpa]	0.930	0.943	0.598	1e-109
449449300	363	PREDICTED: uncharacterized protein LOC10	0.983	0.969	0.580	1e-107
356535617	365	PREDICTED: uncharacterized protein LOC10	0.963	0.945	0.581	1e-106
18414504	345	OTU-like cysteine protease family protei	0.952	0.988	0.564	1e-106
225435383	353	PREDICTED: uncharacterized protein LOC10	0.938	0.951	0.583	1e-106
297746292	354	unnamed protein product [Vitis vinifera]	0.938	0.949	0.583	1e-106
357443173	381	hypothetical protein MTR_1g094650 [Medic	0.958	0.900	0.537	1e-104
297806399	345	hypothetical protein ARALYDRAFT_908309 [	0.952	0.988	0.550	1e-103

>gi|356576239|ref|XP_003556241.1| PREDICTED: uncharacterized protein LOC100820379 [Glycine max]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/369 (61%), Positives = 268/369 (72%), Gaps = 23/369 (6%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           M T+E DPDV+RWGLH LLD+CTLS+ GS +++T+YD D S+V YV E + + E  YV+N
Sbjct: 1   MATHEMDPDVVRWGLH-LLDVCTLSHHGSPSIVTQYDPDLSRVEYVTEGFCQHE--YVDN 57

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPE----KSSILEQDRV-SPLGIYN--NSVCEN--- 113
           DE +A   QEE SQ+ +  ASG  N E    + S+  QD   S  G YN  N  C+N   
Sbjct: 58  DEAVARAYQEELSQLDSMGASGISNFENEGMQGSVYTQDWPQSSNGNYNFGNESCQNSVD 117

Query: 114 ---DRSAADGSGKNEEEMDDSGRMVEAD-YQSKGEKVELEYDEDNMEDLLHQLDTTDESS 169
              +    +  G    E ++   M E D Y S    VE+    D+  D    L+ +DESS
Sbjct: 118 ESYNMKEVENYGPTPSERENG--MHENDVYGSSSGSVEVPVISDDFWD---SLEISDESS 172

Query: 170 VIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQ 229
            +DGE+GKRLNQMVP+PH+PK N  IPS DEEISDHQR+LDRLQLYDL+E KVQGDGNCQ
Sbjct: 173 -LDGEVGKRLNQMVPIPHVPKTNEKIPSDDEEISDHQRLLDRLQLYDLIECKVQGDGNCQ 231

Query: 230 FRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTL 289
           FRSLSDQLYRSP+HH FVRQQ+V QLK++P++Y GYVPMAY DYLK M+KSGEWGDHVTL
Sbjct: 232 FRSLSDQLYRSPDHHKFVRQQIVQQLKSYPDLYAGYVPMAYIDYLKNMSKSGEWGDHVTL 291

Query: 290 QAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDD 349
           QAAAD YGVK+FV+TSFKDTCYIEILP + KS RVIFLSFWAEVHYNSIYPEGELP    
Sbjct: 292 QAAADWYGVKIFVITSFKDTCYIEILPQIQKSGRVIFLSFWAEVHYNSIYPEGELPSSHT 351

Query: 350 KKKKKWWKF 358
           KKKKKWW F
Sbjct: 352 KKKKKWWNF 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085991|emb|CBI31432.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/358 (60%), Positives = 257/358 (71%), Gaps = 40/358 (11%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           MI YEQDPDV+RWGLH LLDIC+LSN                VGY  E ++      VEN
Sbjct: 1   MIGYEQDPDVVRWGLH-LLDICSLSN----------------VGYYEEQHNS-----VEN 38

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEK----SSILEQDRVSPLGIYNNSVCENDRSAAD 119
           DE+IAH LQEE S +AAAEASG  N  K    +SIL QD + P                 
Sbjct: 39  DEIIAHALQEELSHIAAAEASGLSNVGKDHLQASILAQDWLGP------------SKRHP 86

Query: 120 GSGKNEEEMDDSGRMVEADYQSKGEKVEL-EYDEDNMEDLLHQLDTTDESSVIDGELGKR 178
           GSG +E + D S +  EAD           E    + ED  + L+ TDES V+DGE+GKR
Sbjct: 87  GSGHDERQDDSSRKKEEADGIGVSSSCSSPEGKPLSGEDFSYSLEMTDES-VLDGEVGKR 145

Query: 179 LNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLY 238
           LNQMVPVPH+PK+NG+IPS DE  SDH+R+L+RLQLYDL E KVQGDGNCQFR+LSDQ Y
Sbjct: 146 LNQMVPVPHVPKVNGEIPSVDEATSDHERLLNRLQLYDLFELKVQGDGNCQFRALSDQFY 205

Query: 239 RSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGV 298
           R+P+HH FVR+Q+VNQLKA+P IYEGYVPMAY +YLKKM+K+GEWGDHVTLQAAAD+YG+
Sbjct: 206 RTPDHHKFVREQIVNQLKANPRIYEGYVPMAYGEYLKKMSKNGEWGDHVTLQAAADTYGL 265

Query: 299 KVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKKKWW 356
           K+FVLTSFKDTCYIEILP++ KS RVIFLSFWAEVHYNSIYP+ ++P+ D KKK KWW
Sbjct: 266 KIFVLTSFKDTCYIEILPNIQKSNRVIFLSFWAEVHYNSIYPQEDMPISDTKKKWKWW 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109808|ref|XP_002315318.1| predicted protein [Populus trichocarpa] gi|222864358|gb|EEF01489.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/349 (59%), Positives = 252/349 (72%), Gaps = 16/349 (4%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAY-VE 62
           MI +EQDPDV+RWGLH L+  CTL NSGS   +TR+DRD+   GYVRE Y++ E A  VE
Sbjct: 1   MIVFEQDPDVVRWGLHNLIQDCTLPNSGSCYAVTRHDRDTFNAGYVRENYNDPEYANNVE 60

Query: 63  NDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYN---------NSVCEN 113
           ND VIA  LQEE S++A AE+ G  N E+ SI+ Q        Y+         N  CEN
Sbjct: 61  NDAVIARALQEELSRIADAESFGLNNAEQESIIMQLWPCSHEKYHEHKNSQEVTNDHCEN 120

Query: 114 DRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDG 173
            ++  D   KN    DDS +  E    +   K E   D  NME+L    +  +E + +DG
Sbjct: 121 -KTGVDNHSKNV--ADDSSKKDETAIPTSSSKSE--EDSLNMEELAINSNLANEYA-LDG 174

Query: 174 ELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSL 233
           E+GKR++ MVP+P +PK NG+IPS D E SDHQR+LDRL++YDLVENKV GDGNCQFRSL
Sbjct: 175 EVGKRISDMVPIPLVPKTNGEIPSEDAETSDHQRLLDRLKVYDLVENKVLGDGNCQFRSL 234

Query: 234 SDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAA 293
           SDQLYRSPEHH  VR+QV++QLK+ P++YEGYVPMAY DYLKKM+K GEWGDH+TLQAAA
Sbjct: 235 SDQLYRSPEHHKLVREQVIDQLKSQPQMYEGYVPMAYDDYLKKMSKGGEWGDHITLQAAA 294

Query: 294 DSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEG 342
           DSYGVK+FV+TSFKDTCY+EILP   KS RVIFLSFWAEVHYNSIY EG
Sbjct: 295 DSYGVKIFVITSFKDTCYLEILPQAQKSDRVIFLSFWAEVHYNSIYSEG 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449300|ref|XP_004142403.1| PREDICTED: uncharacterized protein LOC101221304 [Cucumis sativus]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/362 (58%), Positives = 256/362 (70%), Gaps = 10/362 (2%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRY--DRDSSQVGYVRECYSETELAYV 61
           M TY+ DPDV+RWGLH LLD+CT +N GS + +T Y  D   SQV YV E Y E     +
Sbjct: 3   MATYDIDPDVMRWGLH-LLDVCTFTNDGSGSTVTEYSFDPSCSQVEYVIEGYCEPCNVNL 61

Query: 62  ENDEVIAHVLQEEFSQVAAAEASGSINPE----KSSILEQDRVSPLGIYNNSVCENDRSA 117
           ENDE +AH  QEE S++ + EASG  +      ++S+L Q+   P   +N    ++D+ +
Sbjct: 62  ENDEALAHAFQEEISRIDSIEASGVSDSRDDQMQASVLSQEWPVPSPRHNPYGFDSDQKS 121

Query: 118 ADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLL-HQLDTTDESSVIDGELG 176
              +  N EE  D  R+ E D            D   +++   + L+  DESS +DGE+G
Sbjct: 122 NCVNDVNIEEPGDL-RVNEVDKMGISSSYHNAVDNPFVDECSSYSLEIIDESS-LDGEVG 179

Query: 177 KRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQ 236
           KRLNQ+VPVPH+PK    IPS DEEISDHQR+L+RLQLY+LVEN VQGDGNCQFR+LSDQ
Sbjct: 180 KRLNQIVPVPHVPKTIEKIPSADEEISDHQRLLERLQLYELVENTVQGDGNCQFRALSDQ 239

Query: 237 LYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSY 296
           LYRSPEHH FVR+QV+ QLK   E+YEGYVPM Y +YLKKM+K GEWGDHVTLQAAAD +
Sbjct: 240 LYRSPEHHDFVREQVIAQLKFCREMYEGYVPMTYEEYLKKMSKKGEWGDHVTLQAAADWF 299

Query: 297 GVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKKKWW 356
           GVK+FV+TSFKDTC IEILP V KS R+IFLSFWAEVHYNSIYPEGE+P    KKKKKWW
Sbjct: 300 GVKIFVITSFKDTCSIEILPQVQKSNRIIFLSFWAEVHYNSIYPEGEIPTSCTKKKKKWW 359

Query: 357 KF 358
            F
Sbjct: 360 NF 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535617|ref|XP_003536341.1| PREDICTED: uncharacterized protein LOC100811064 [Glycine max]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/373 (58%), Positives = 264/373 (70%), Gaps = 28/373 (7%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           M  YE DPDV+RWGLH LLD CTLS+  S +++T+YD D SQV YV E + + +  YV++
Sbjct: 1   MAIYELDPDVVRWGLH-LLDDCTLSHHYSPSIVTQYDPDLSQVEYVTEGFCQHQ--YVDS 57

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPE----KSSILEQDRV-SPLGIYN--NSVCENDRS 116
           DE +A   QEE  Q+ +  ASG  N E    + S+  QD   S  G  N  N  C+N   
Sbjct: 58  DEAVAQAYQEELWQLDSMVASGISNFENEGMQGSVYTQDWPQSSNGNDNLGNESCQN--- 114

Query: 117 AADGSGKNEEEMDDSG--------RMVEADY-QSKGEKVELEYDEDNMEDLLHQLDTTDE 167
            + G   N +E+ + G         + E D   S    VE+     + +D    L+ +DE
Sbjct: 115 -SVGESYNMKEVGNYGPTPSERKNDVHENDVCGSSSGSVEVPATATS-DDFWDSLEISDE 172

Query: 168 SSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGN 227
           S  +DGE+GKRLNQMVP+PH+PK N  IPS DEEISDHQR+LDRLQLYDL+E KVQGDGN
Sbjct: 173 S--LDGEVGKRLNQMVPIPHVPKTNEKIPSDDEEISDHQRLLDRLQLYDLIECKVQGDGN 230

Query: 228 CQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHV 287
           CQFRSLSDQLYRSP+HH FVR+Q++ QLK +P++Y GYVP+AYSDYL+ M+KSGEWGDHV
Sbjct: 231 CQFRSLSDQLYRSPDHHKFVREQIIQQLKYYPDLYAGYVPLAYSDYLRNMSKSGEWGDHV 290

Query: 288 TLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEG--ELP 345
           TLQAAAD YGVK+FV+TSFKDTCYIEILP + KS+RVIFLSFWAEVHYNSIYPEG  ELP
Sbjct: 291 TLQAAADWYGVKIFVITSFKDTCYIEILPQIQKSERVIFLSFWAEVHYNSIYPEGDSELP 350

Query: 346 LLDDKKKKKWWKF 358
               KKKKKWW F
Sbjct: 351 SSHTKKKKKWWNF 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414504|ref|NP_568136.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|186520008|ref|NP_001119168.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|21592575|gb|AAM64524.1| unknown [Arabidopsis thaliana] gi|62320580|dbj|BAD95211.1| hypothetical protein [Arabidopsis thaliana] gi|90093272|gb|ABD85149.1| At5g04250 [Arabidopsis thaliana] gi|332003335|gb|AED90718.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|332003336|gb|AED90719.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|407078853|gb|AFS88957.1| OTU-containing deubiquitinating enzyme OTU9 [Arabidopsis thaliana]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/358 (56%), Positives = 260/358 (72%), Gaps = 17/358 (4%)

Query: 5   ITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQV-GYVRECYSETELAYVEN 63
           + YE DPD LRWGLH L ++CTL+N+GS + +TRY+       GYVRE Y++    YV+N
Sbjct: 1   MGYEPDPDALRWGLHDL-EVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPVTGYVDN 59

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGK 123
           D VIA   Q+E S+VA AEASG  +   +S++ QD   P     +   EN   A D + +
Sbjct: 60  DAVIAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHP-----HQGQENQGEAIDITQE 114

Query: 124 NEEEMDDSGRMVE---ADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
           ++   + +G M +   A  + +G +     D+D+    +  ++  +ES     E+GKRLN
Sbjct: 115 SDILHNHNGNMEDKNVARIRFEGGQSSPSRDDDS----VCSVEIEEESW---SEVGKRLN 167

Query: 181 QMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS 240
           QM+P+ H+PKING++PS DE+ISDH+R+  RLQLY LVENK++GDGNCQFRSLSDQLYRS
Sbjct: 168 QMIPIAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRS 227

Query: 241 PEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKV 300
           PEHH FVR+QVVNQL  + EIYEGYVPMAY+DYLK M ++GEWGDHVTLQAAAD +GV++
Sbjct: 228 PEHHNFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADLFGVRM 287

Query: 301 FVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKKKWWKF 358
           FV+TSFKDTCYIEILPH  KS R+I LSFWAEVHYNSIYPEGELP+ + KKKKK+W F
Sbjct: 288 FVITSFKDTCYIEILPHFQKSNRLICLSFWAEVHYNSIYPEGELPIPEGKKKKKYWVF 345

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435383|ref|XP_002282609.1| PREDICTED: uncharacterized protein LOC100243216 [Vitis vinifera]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/358 (58%), Positives = 253/358 (70%), Gaps = 22/358 (6%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           MITYEQDPDV+RWGL QL D    SN G    I + D       Y +E + + E + VEN
Sbjct: 1   MITYEQDPDVVRWGL-QLFDGDPFSNCGYGGTIVQNDVSYYDGPYFKEDHYDNECSNVEN 59

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAAD---G 120
           DE+IAH LQEE SQ+A  EA+G         L  + V  L +        D+S  +   G
Sbjct: 60  DEIIAHALQEELSQLAVDEAAG---------LSHEVVEDLQVSIFPEEWPDQSMGNYGFG 110

Query: 121 SGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
               +E+ DD G  + +   S  EK        N ED  + LD TDE + +D E+GK LN
Sbjct: 111 HESGQEDTDDMG--LSSSCSSPDEKSY------NGEDWSYSLDLTDEYA-LDDEVGKILN 161

Query: 181 QMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS 240
           QMVPVPH+PKING+IPS DE   DHQR+LDRLQL+DLVE KVQGDGNCQFRSLSDQ+Y +
Sbjct: 162 QMVPVPHVPKINGEIPSLDEATLDHQRLLDRLQLFDLVELKVQGDGNCQFRSLSDQVYCT 221

Query: 241 PEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKV 300
           PEHH F+RQQVVNQLK++PEIYEGYVPMAY DYL+KM+K+GEWGDHVTLQAAAD YGVK+
Sbjct: 222 PEHHQFIRQQVVNQLKSYPEIYEGYVPMAYGDYLEKMSKTGEWGDHVTLQAAADLYGVKI 281

Query: 301 FVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKKKWWKF 358
           FV+TSFKDTCYIEILP+V +S+RV+ LSFWAEVHYNSIY +G++P  + KKKK+WW F
Sbjct: 282 FVITSFKDTCYIEILPNVQRSERVMLLSFWAEVHYNSIYFKGDVPEFETKKKKRWWSF 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746292|emb|CBI16348.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/358 (58%), Positives = 253/358 (70%), Gaps = 22/358 (6%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           MITYEQDPDV+RWGL QL D    SN G    I + D       Y +E + + E + VEN
Sbjct: 1   MITYEQDPDVVRWGL-QLFDGDPFSNCGYGGTIVQNDVSYYDGPYFKEDHYDNECSNVEN 59

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAAD---G 120
           DE+IAH LQEE SQ+A  EA+G         L  + V  L +        D+S  +   G
Sbjct: 60  DEIIAHALQEELSQLAVDEAAG---------LSHEVVEDLQVSIFPEEWPDQSMGNYGFG 110

Query: 121 SGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
               +E+ DD G  + +   S  EK        N ED  + LD TDE + +D E+GK LN
Sbjct: 111 HESGQEDTDDMG--LSSSCSSPDEKSY------NGEDWSYSLDLTDEYA-LDDEVGKILN 161

Query: 181 QMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS 240
           QMVPVPH+PKING+IPS DE   DHQR+LDRLQL+DLVE KVQGDGNCQFRSLSDQ+Y +
Sbjct: 162 QMVPVPHVPKINGEIPSLDEATLDHQRLLDRLQLFDLVELKVQGDGNCQFRSLSDQVYCT 221

Query: 241 PEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKV 300
           PEHH F+RQQVVNQLK++PEIYEGYVPMAY DYL+KM+K+GEWGDHVTLQAAAD YGVK+
Sbjct: 222 PEHHQFIRQQVVNQLKSYPEIYEGYVPMAYGDYLEKMSKTGEWGDHVTLQAAADLYGVKI 281

Query: 301 FVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKKKWWKF 358
           FV+TSFKDTCYIEILP+V +S+RV+ LSFWAEVHYNSIY +G++P  + KKKK+WW F
Sbjct: 282 FVITSFKDTCYIEILPNVQRSERVMLLSFWAEVHYNSIYFKGDVPEFETKKKKRWWSF 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443173|ref|XP_003591864.1| hypothetical protein MTR_1g094650 [Medicago truncatula] gi|355480912|gb|AES62115.1| hypothetical protein MTR_1g094650 [Medicago truncatula]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/391 (53%), Positives = 261/391 (66%), Gaps = 48/391 (12%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           M +++ DPDV+RWGLH LLD+CT  +  S  V+TR DRD SQV YVRE +   E + VE+
Sbjct: 1   MTSHDMDPDVVRWGLH-LLDVCTFPHGRSPGVVTRCDRDYSQVQYVREGF--FEYSNVEH 57

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPE----KSSILEQDRVSPLG--------IYNNSV- 110
           DE +A   QEE S + + E+SG +N E    + SI  QD +S            Y N V 
Sbjct: 58  DEAVARAYQEELSHLDSMESSGRMNFENDQARVSIDAQDWLSSSNRSYNFGDESYQNPVD 117

Query: 111 --CENDRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDES 168
             C   R  A+  G +E E D+    V       GE   +       +++   L+ +DES
Sbjct: 118 ESCHMKR--AEDCGPSERENDEHEVGVFGSSSRSGEMPII------TDEMWRSLEISDES 169

Query: 169 SVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQ--------------- 213
           S +DGE+GKRLNQMVP+PH+PK N +IPS DEE+SDHQR+LDR +               
Sbjct: 170 S-LDGEVGKRLNQMVPIPHVPKTNKNIPSDDEEVSDHQRLLDRSRIGNCWEQLGLPQKRV 228

Query: 214 ------LYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVP 267
                 LY+L+E+KV GDGNCQFR+LSDQLYRSP  H FVR+QVV QLK+ P++Y GYVP
Sbjct: 229 EAVKSALYELIESKVDGDGNCQFRALSDQLYRSPNLHKFVREQVVQQLKSDPDLYAGYVP 288

Query: 268 MAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFL 327
           MAYS+YLKKM++SGEWGDHVTLQAAAD YGVK+FV+TSFKDTCYIEILP + KS R+IFL
Sbjct: 289 MAYSEYLKKMSRSGEWGDHVTLQAAADWYGVKIFVITSFKDTCYIEILPQIQKSTRIIFL 348

Query: 328 SFWAEVHYNSIYPEGELPLLDDKKKKKWWKF 358
           SFWAEVHYNSIYPEGE+P    KKKK+WW F
Sbjct: 349 SFWAEVHYNSIYPEGEMPSSYLKKKKRWWNF 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806399|ref|XP_002871083.1| hypothetical protein ARALYDRAFT_908309 [Arabidopsis lyrata subsp. lyrata] gi|297316920|gb|EFH47342.1| hypothetical protein ARALYDRAFT_908309 [Arabidopsis lyrata subsp. lyrata]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/358 (55%), Positives = 256/358 (71%), Gaps = 17/358 (4%)

Query: 5   ITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQV-GYVRECYSETELAYVEN 63
           + YE DPD LRWGLH L ++CTL+N+GS + +TRY+       GYVRE Y++    YV+N
Sbjct: 1   MGYEPDPDALRWGLHDL-EVCTLTNAGSCSTVTRYESGGGGTQGYVREGYNQPLTGYVDN 59

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGK 123
           D  IA   Q+E S+VA AEASG  N   +S++ Q+   P     +   EN   A   S +
Sbjct: 60  DAAIAQFYQDELSRVARAEASGLNNLSPTSVVAQEWPHP-----HQGQENQGEAIAISRE 114

Query: 124 NEEEMDDSGRMVE---ADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
           ++   + +G M +   A  + +G +     D+D+    +  ++  +ES     E+GKRLN
Sbjct: 115 SDILHNHNGNMEDKNVARIRFQGGQSSPPRDDDS----VCSVEIEEESW---SEVGKRLN 167

Query: 181 QMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS 240
           QM+P+ H+PKING++PS DE+ISDH+R+  RLQLY LVENK++GDGNCQFRSLSDQLYRS
Sbjct: 168 QMIPIAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRS 227

Query: 241 PEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKV 300
            EHH FVR+Q+VNQL  + E+YEGYVPMAY+DYLK M ++GEWGDHVTLQAAAD +GV++
Sbjct: 228 SEHHNFVREQIVNQLAYNREMYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADWFGVRM 287

Query: 301 FVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDDKKKKKWWKF 358
           FV+TSFKDTCYIEILP   KS R+I LSFWAEVHYNSIYPEGELP+ + KKKKK+W F
Sbjct: 288 FVITSFKDTCYIEILPQFQKSNRLICLSFWAEVHYNSIYPEGELPIPEGKKKKKYWVF 345

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2146673	345	AT5G04250 [Arabidopsis thalian	0.916	0.950	0.568	9.4e-98
TAIR|locus:2142659	356	AT5G03330 [Arabidopsis thalian	0.907	0.912	0.442	7.7e-71
TAIR|locus:2078648	219	AT3G02070 [Arabidopsis thalian	0.525	0.858	0.563	1.2e-56
TAIR|locus:2091633	245	AT3G22260 [Arabidopsis thalian	0.539	0.787	0.5	1.5e-49
DICTYBASE|DDB_G0284757	766	DDB_G0284757 "OTU domain conta	0.407	0.190	0.375	8.8e-21
TAIR|locus:2056133	189	AT2G39320 [Arabidopsis thalian	0.187	0.354	0.411	8.6e-19
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.365	0.299	0.297	1.3e-13
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.318	0.121	0.336	2e-12
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.318	0.121	0.336	2e-12
DICTYBASE|DDB_G0285907	537	DDB_G0285907 "OTU domain conta	0.586	0.391	0.237	3.6e-09

TAIR|locus:2146673 AT5G04250 [Arabidopsis thaliana (taxid:3702)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 194/341 (56%), Positives = 248/341 (72%)

Query:     7 YEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQV-GYVRECYSETELAYVENDE 65
             YE DPD LRWGLH L ++CTL+N+GS + +TRY+       GYVRE Y++    YV+ND 
Sbjct:     3 YEPDPDALRWGLHDL-EVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPVTGYVDNDA 61

Query:    66 VIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGKNE 125
             VIA   Q+E S+VA AEASG  +   +S++ QD   P   +     EN   A D + +++
Sbjct:    62 VIAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHP---HQGQ--ENQGEAIDITQESD 116

Query:   126 EEMDDSGRMVEADY-QSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVP 184
                + +G M + +  + + E  +     D  +D +  ++  +ES     E+GKRLNQM+P
Sbjct:   117 ILHNHNGNMEDKNVARIRFEGGQSSPSRD--DDSVCSVEIEEESW---SEVGKRLNQMIP 171

Query:   185 VPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHH 244
             + H+PKING++PS DE+ISDH+R+  RLQLY LVENK++GDGNCQFRSLSDQLYRSPEHH
Sbjct:   172 IAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHH 231

Query:   245 MFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLT 304
              FVR+QVVNQL  + EIYEGYVPMAY+DYLK M ++GEWGDHVTLQAAAD +GV++FV+T
Sbjct:   232 NFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADLFGVRMFVIT 291

Query:   305 SFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELP 345
             SFKDTCYIEILPH  KS R+I LSFWAEVHYNSIYPEGELP
Sbjct:   292 SFKDTCYIEILPHFQKSNRLICLSFWAEVHYNSIYPEGELP 332

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2142659 AT5G03330 [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 153/346 (44%), Positives = 220/346 (63%)

Query:     4 MITYEQDPDVLRW--GLHQLLDI---CTLSNSGSQNVITRYDRDSSQVGYVRECYSETEL 58
             M+++E++  ++ W  G H          + +   +  +  +        Y RE Y +   
Sbjct:     1 MVSHEENTSIVEWFLGPHPYTYPPYGIEMIHEDDEVAVAHHHHHHQSGEYYRE-YEDHRS 59

Query:    59 AYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDR-VSPLGIYNNSVCENDRS- 116
             + V+NDE+IA  LQ++F Q+  AE++   +  +    +Q+   +     NN    ND+S 
Sbjct:    60 SDVDNDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNNNGYAWNDQSP 119

Query:   117 AADGSGK---NEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDG 173
             A D S +   N+ + D  GR   +D            D D   + ++  ++ D+    DG
Sbjct:   120 AVDYSSEWIGNDNDQD--GR---SDDSVNVFSCSSPSDTD---EYVYSWES-DQCDA-DG 169

Query:   174 ELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSL 233
             E G+RLNQMVP+P+IPKING+IP  +E +SDH+R+ +RL+++D  E KV GDGNCQFR+L
Sbjct:   170 EFGRRLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRAL 229

Query:   234 SDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAA 293
             +DQLY++ + H  VR+Q+V QLK+ P+ Y+GYVPM +SDYL+KM++SGEWGDHVTLQAAA
Sbjct:   230 ADQLYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAA 289

Query:   294 DSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIY 339
             D+Y VK+ VLTSFKDTCYIEILP   +SK VIFLSFWAEVHYN+IY
Sbjct:   290 DAYRVKIVVLTSFKDTCYIEILPTSQESKGVIFLSFWAEVHYNAIY 335

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2078648 AT3G02070 [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 106/188 (56%), Positives = 139/188 (73%)

Query:   152 EDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDR 211
             +D  +D +     ++E S +DG +G+RL+ + PVPH+P+IN  IP+ ++   DHQR+L R
Sbjct:    14 KDTEDDRMIAFMLSEEYSKLDGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQR 73

Query:   212 LQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYS 271
             L +Y L E KV GDGNCQFR+LSDQLYRSPE+H  VR++VV QLK    +YE YVPM Y 
Sbjct:    74 LNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKECRSMYESYVPMKYK 133

Query:   272 DYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWA 331
              Y KKM K GEWGDH+TLQAAAD +  K+ +LTSF+DTC+IEI+P     K V++LSFW+
Sbjct:   134 RYYKKMGKFGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFWS 193

Query:   332 EVHYNSIY 339
             EVHYNS+Y
Sbjct:   194 EVHYNSLY 201

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2091633 AT3G22260 [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 97/194 (50%), Positives = 133/194 (68%)

Query:   151 DEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLD 210
             D D+ + +   L   DES   +G+LGKRL+ +  +PH P++N +IP  ++   DH+ +  
Sbjct:    36 DTDDDQTIARIL-AEDESLRREGKLGKRLSHLDSIPHTPRVNREIPDINDATLDHELLSG 94

Query:   211 RLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAY 270
             RL  Y L E +++GDGNCQFR+L+DQL+R+ ++H  VR+ VV QLK   ++YE YVPM Y
Sbjct:    95 RLATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKY 154

Query:   271 SDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFW 330
               Y +KM K GEWGDHVTLQAAAD +  K+ ++TSF+D  YIEILPH     R  +LSFW
Sbjct:   155 RHYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFW 214

Query:   331 AEVHYNSIYPEGEL 344
             +EVHYNS+Y  G L
Sbjct:   215 SEVHYNSLYANGVL 228

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0284757 DDB_G0284757 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 255 (94.8 bits), Expect = 8.8e-21, P = 8.8e-21
 Identities = 59/157 (37%), Positives = 91/157 (57%)

Query:   195 IPSPDEEISDHQRMLDRLQLYDLVENK-VQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVN 253
             +P   E     QR+ +RL+LY L  +K + GDGNCQ  +LSDQLY    H   VR+ +V+
Sbjct:   608 LPQSKEVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVD 667

Query:   254 QLKAHPEIY--EG-----YVPMA-YSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTS 305
              L+ + +     G     +V    + DY   M+K+G WGDH+TL AAA+ +G K+ +++S
Sbjct:   668 WLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISS 727

Query:   306 FKDTC--YIEILPHVPKSKRVIFLSFWAEVHYNSIYP 340
              +     +IEI+P    + +V+ LS +AE HY S+ P
Sbjct:   728 VESQSNFFIEIIPSKILNDKVLLLSHYAEFHYGSLCP 764

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2056133 AT2G39320 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 8.6e-19, Sum P(2) = 8.6e-19
 Identities = 28/68 (41%), Positives = 45/68 (66%)

Query:   277 MNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSK-RVIFLSFWAEVHY 335
             ++ + +WGD VTL+ AAD Y VK+ ++TS K   ++E LP   K   +VI +S+ A +H+
Sbjct:    38 LSTNSQWGDEVTLRVAADVYQVKIILITSIKLIPFMEFLPKSQKEPDKVIHMSYLAGIHF 97

Query:   336 NSIYPEGE 343
             NSIY + +
Sbjct:    98 NSIYKKNK 105

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 201 (75.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 41/138 (29%), Positives = 76/138 (55%)

Query:   211 RLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVP--- 267
             +L+ +  +   V GDGNC FRS++DQL  +P  H   R+ +   ++ + +++  ++    
Sbjct:    58 QLEPFGFIIKDVAGDGNCLFRSIADQLQDAPNEHRKYREAICKYIEKNKDMFAPFIDDEE 117

Query:   268 -MAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSK-RVI 325
               ++ +Y+++M +   WG HV +QAA+ +Y V + +     D    EI+ H P  K + I
Sbjct:   118 FESFEEYIQEMREDATWGGHVEIQAASLAYNVNITIHQM--DQPRWEIVNHFPPEKNKTI 175

Query:   326 FLSFWAEVHYNSIYPEGE 343
              LS+  + HYNS+ P  +
Sbjct:   176 HLSYHNDEHYNSVRPANQ 193

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 196 (74.1 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 40/119 (33%), Positives = 71/119 (59%)

Query:   222 VQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLKKMNK 279
             ++ DGNC FR++SDQLY   E++  +R++VV  L  + E+Y+ ++    +Y  Y+++++ 
Sbjct:    55 IRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISL 114

Query:   280 SGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSI 338
              G WG  + LQA  + Y  KV +L   ++ C +EI  H   +K  + L + +  HYNS+
Sbjct:   115 DGTWGGQLELQAVGEIY--KVNILIYQENGCILEIKNHSDDNK-CLQLHYASSEHYNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 196 (74.1 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 40/119 (33%), Positives = 71/119 (59%)

Query:   222 VQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLKKMNK 279
             ++ DGNC FR++SDQLY   E++  +R++VV  L  + E+Y+ ++    +Y  Y+++++ 
Sbjct:    55 IRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISL 114

Query:   280 SGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSI 338
              G WG  + LQA  + Y  KV +L   ++ C +EI  H   +K  + L + +  HYNS+
Sbjct:   115 DGTWGGQLELQAVGEIY--KVNILIYQENGCILEIKNHSDDNK-CLQLHYASSEHYNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285907 DDB_G0285907 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 164 (62.8 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 54/227 (23%), Positives = 106/227 (46%)

Query:   113 NDRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVID 172
             N+ +  + + KN  E+ +  R   +D ++  +    EY+ ++      + D+T+ +S   
Sbjct:   132 NNNNNNNNNNKNNREIRNH-RNNHSDEENSAD----EYESNSYRHHTKKRDSTNLNSGGI 186

Query:   173 GELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRS 232
                G   N  +       IN +IP  DE+  +      +      +  K++ DGNC FRS
Sbjct:   187 SNSGGGGNGNI------NINNNIPFNDEKTFEENLKKSK----GFIVRKMKQDGNCLFRS 236

Query:   233 LSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAA 292
             ++DQ+Y   E H  VR++ ++ ++A  + +  ++   ++DY+ +      +G++  +QA 
Sbjct:   237 VADQIYGDQEMHNTVREKCMDYMEAERDHFSQFITEDFADYIARKRTDKVFGNNTEMQAM 296

Query:   293 ADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIY 339
             A+ +   + V +   D   I I     K    I LS+    HY+SIY
Sbjct:   297 AELFNRPIEVYSKTIDP--INIFHGSYKGNYPIRLSYLHGNHYDSIY 341

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	1e-27

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score =  104 bits (261), Expect = 1e-27
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 10/122 (8%)

Query: 224 GDGNCQFRSLSDQLY--RSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSG 281
           GDGNC F ++SDQL      E H  +R+ VV  L+ + E +E ++    ++Y K ++K G
Sbjct: 2   GDGNCLFHAVSDQLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISKDG 61

Query: 282 EWGDHVTLQAAADSYGVKVFVL--TSFKDTCYIEILPHVPKS--KRVIFLSFWA----EV 333
            WG ++ + A A    V + V      + T YI+I         K VI LS+        
Sbjct: 62  AWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGN 121

Query: 334 HY 335
           HY
Sbjct: 122 HY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	100.0
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.92
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.89
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.56
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.49
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.39
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.49
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.23

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.1e-39  Score=317.88  Aligned_cols=350  Identities=28%  Similarity=0.366  Sum_probs=271.9

Q ss_pred             ccccCCCCcceecccccCCCCCCCC---CCCCcceeeecC-CCCccccccccccccccccccchHHHHHHHHHHHHHHHH
Q 018276            5 ITYEQDPDVLRWGLHQLLDICTLSN---SGSQNVITRYDR-DSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAA   80 (358)
Q Consensus         5 ~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ia~~~q~e~~~~~~   80 (358)
                      +.++++|.+++|.|+++=+..++..   .|.++.+.|.-. ++...++++++|+..+...|.+|++||+.+|++++.++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~~~~~~~~~r~~~v~~~~~~~~~~~d~~~~~e~   80 (371)
T KOG2605|consen    1 TFREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGMGTDGYNNKRYGEVDRDFMIARGHQDEVLTVED   80 (371)
T ss_pred             CCccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCccceeccccCccccchhhhhhhhcccccccccccH
Confidence            3578999999999997666554332   566777777644 444568899999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCcccccC-CCCCCCCCCCCcccCCcccCCCCCCCcccccc----cccccccccCCCCceeecccCCCch
Q 018276           81 AEASGSINPEKSSILEQD-RVSPLGIYNNSVCENDRSAADGSGKNEEEMDD----SGRMVEADYQSKGEKVELEYDEDNM  155 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  155 (358)
                      ||.+.....-.-+++.|+ |..+.....+..|....+.+...|...-....    +++......+ ++|+ .-  +|...
T Consensus        81 ~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~-~~~~-~~--~~sd~  156 (371)
T KOG2605|consen   81 AEMAAICQSVLFKVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQAASFGGLEIDLEVERNS-PEWL-GQ--SPSDP  156 (371)
T ss_pred             HHHhhHHhhhhhhhhhhhcccCCCCCcccccCCCCCcccccccccccccccccccccchhhhccC-chhc-cc--ccccc
Confidence            999999988888888888 55544444444444433333222221100001    1111111111 1111 11  23233


Q ss_pred             hHhhhhcccccccccccchhcccccCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHhhCCcEEEEecCCCChhHHHHHH
Q 018276          156 EDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSD  235 (358)
Q Consensus       156 ~~~~~~~~~~~~~~~~dg~~gkrl~~~~p~p~~pk~ng~iPs~de~~~d~qrL~~rL~~~GL~i~~V~GDGNCLFRALS~  235 (358)
                      .....+......-....+++|.++++++|.+++|++++.+|+..+..++|+++.+++..+|+..++|.+||||+|||+|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fra~aD  236 (371)
T KOG2605|consen  157 LRSVPSMEAIHARHPEAKEVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFRALAD  236 (371)
T ss_pred             ccccccccchhhccccchhhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhhccHH
Confidence            32322222222112467899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccCCccCchHHHHHHHH--HhCCeEEEEecCCCceeEE
Q 018276          236 QLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD--SYGVKVFVLTSFKDTCYIE  313 (358)
Q Consensus       236 qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELqAaA~--~y~v~I~V~ts~~~~~~I~  313 (358)
                      |+|++++.|.++|++++++++++++.|+.|+++++.+|+++|++++.||+|+|+||+|.  .+..++.++++.+.++|+.
T Consensus       237 Qvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~  316 (371)
T KOG2605|consen  237 QVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQ  316 (371)
T ss_pred             HhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceec
Confidence            99999999999999999999999999999999999999999999999999999999998  7788888888899999998


Q ss_pred             EcCCCCCCCCeEEEEecCCCcceeeecC--CCCC-CCcccccccccCC
Q 018276          314 ILPHVPKSKRVIFLSFWAEVHYNSIYPE--GELP-LLDDKKKKKWWKF  358 (358)
Q Consensus       314 i~P~~~~~~~~I~Lsy~~~~HYdSV~p~--~diP-~~~~~~~~~~~~~  358 (358)
                      +.|....+...+++.||...||+.++..  ...+ +...++||+||+|
T Consensus       317 ~~~~~~~~~~~~~~n~~~~~h~~~~~~~~~~~~s~~~~~~~~r~~~~~  364 (371)
T KOG2605|consen  317 TPPAIEESVKMEKYNFWVEVHYNTARHSGKSADSATLEEKTKRKSLRR  364 (371)
T ss_pred             cCcccccchhhhhhcccchhhhhhcccccccccccchhhccCCCchhh
Confidence            8887777777899999999999999984  3443 4555788899986

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.92  E-value=2.1e-25  Score=185.73  Aligned_cols=107  Identities=35%  Similarity=0.608  Sum_probs=92.6

Q ss_pred             cCCCChhHHHHHHHHh----cCChhHHHHHHHHHHHHh-hChhHHhhhcCccHHHHHHhhccCCccCchHHHHHHHHHhC
Q 018276          223 QGDGNCQFRSLSDQLY----RSPEHHMFVRQQVVNQLK-AHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYG  297 (358)
Q Consensus       223 ~GDGNCLFRALS~qL~----gsqd~H~~VR~~vV~yL~-~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELqAaA~~y~  297 (358)
                      ||||||||||||+||+    +++..|.+||+.|++||+ +|++.|..|+..+      +|+++|+||+++||+|+|++|+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~   74 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN   74 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence            7999999999999999    999999999999999999 9999999998655      9999999999999999999999


Q ss_pred             CeEEEEecCCCc--eeEEEcCC--CCCCCCeEEEEecC-----CCcc
Q 018276          298 VKVFVLTSFKDT--CYIEILPH--VPKSKRVIFLSFWA-----EVHY  335 (358)
Q Consensus       298 v~I~V~ts~~~~--~~I~i~P~--~~~~~~~I~Lsy~~-----~~HY  335 (358)
                      ++|+|++.....  .++.+.+.  .....++|+|+|..     ++||
T Consensus        75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            999999775543  34444431  23567899999998     9998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.4e-23  Score=200.10  Aligned_cols=139  Identities=19%  Similarity=0.340  Sum_probs=120.4

Q ss_pred             hhhHHHHHHHHHhhCCcEEEEecCCCChhHHHHHHHHhcC---ChhHHHHHHHHHHHHhhChhHHhhhcC----------
Q 018276          201 EISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS---PEHHMFVRQQVVNQLKAHPEIYEGYVP----------  267 (358)
Q Consensus       201 ~~~d~qrL~~rL~~~GL~i~~V~GDGNCLFRALS~qL~gs---qd~H~~VR~~vV~yL~~n~d~f~~fV~----------  267 (358)
                      ..++.+.|.+.|...||..++||.||+|+|+||++||--.   .-..+.||.++++||++|.+.|.+|+.          
T Consensus       143 k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~  222 (302)
T KOG2606|consen  143 KSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGP  222 (302)
T ss_pred             hhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCH
Confidence            3456788999999999999999999999999999998633   356899999999999999999999873          


Q ss_pred             ccHHHHHHhhccCCccCchHHHHHHHHHhCCeEEEEecCCCceeEEEcCCCCCCCCeEEEEecC-----CCcceeeecCC
Q 018276          268 MAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWA-----EVHYNSIYPEG  342 (358)
Q Consensus       268 ~~~~eYl~kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~-----~~HYdSV~p~~  342 (358)
                      .+|+.||+.|+.++.|||++||.|+|.+|++||.||...++.  +.|++...+ .++|.|+|+.     |.||||+.+..
T Consensus       223 ~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~--~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~~~  299 (302)
T KOG2606|consen  223 EDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPI--LEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTPLK  299 (302)
T ss_pred             HHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCc--eeechhhCC-CCCeeeehHHhHHHHHhhhccccccc
Confidence            269999999999999999999999999999999999987643  456665433 6889999986     69999998754

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=5e-15  Score=140.81  Aligned_cols=123  Identities=18%  Similarity=0.399  Sum_probs=100.6

Q ss_pred             cEEEEecCCCChhHHHHHHHHhcCCh-hHHHHHHHHHHHHhhChhHHh-hhcCccHHHHHHhhccCCccCchHHHHHHHH
Q 018276          217 LVENKVQGDGNCQFRSLSDQLYRSPE-HHMFVRQQVVNQLKAHPEIYE-GYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD  294 (358)
Q Consensus       217 L~i~~V~GDGNCLFRALS~qL~gsqd-~H~~VR~~vV~yL~~n~d~f~-~fV~~~~~eYl~kM~k~gtWGg~iELqAaA~  294 (358)
                      |.++-||.|.+|||+||++-+.+.-. .-.++|+.|.+.+.+||+.|. .+++..-.+||.++.|+.+|||.|||.++|+
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~  189 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD  189 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence            56788999999999999999987533 236999999999999999996 5788899999999999999999999999999


Q ss_pred             HhCCeEEEEecCCCceeEEEcCCCCCCCCeEEEEecCCCcceeeecCC
Q 018276          295 SYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEG  342 (358)
Q Consensus       295 ~y~v~I~V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~p~~  342 (358)
                      .|+|.|+++....  ..|.-+........-++|.| +|.|||++....
T Consensus       190 ~ygveI~vvDiqt--~rid~fged~~~~~rv~lly-dGIHYD~l~m~~  234 (307)
T KOG3288|consen  190 YYGVEICVVDIQT--VRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNE  234 (307)
T ss_pred             hhceeEEEEecce--eeehhcCCCCCCCceEEEEe-cccccChhhhcc
Confidence            9999999997643  23333333333455677776 789999997543

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.49  E-value=4e-13  Score=126.31  Aligned_cols=94  Identities=24%  Similarity=0.398  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhhChhHHhhhcC----ccHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCC-----ceeEEEc
Q 018276          246 FVRQQVVNQLKAHPEIYEGYVP----MAYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKD-----TCYIEIL  315 (358)
Q Consensus       246 ~VR~~vV~yL~~n~d~f~~fV~----~~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~-----~~~I~i~  315 (358)
                      .+|..+..||+.|++.|.+|+.    .++++||. .+...+.-++|+.|.|||++++++|.|+.-.++     .....+.
T Consensus       141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~  220 (244)
T PF10275_consen  141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP  220 (244)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence            6788999999999999999997    78999997 577788889999999999999999999976653     1222333


Q ss_pred             CCCCCCCCeEEEEecCCCcceeeec
Q 018276          316 PHVPKSKRVIFLSFWAEVHYNSIYP  340 (358)
Q Consensus       316 P~~~~~~~~I~Lsy~~~~HYdSV~p  340 (358)
                      |......+.|+|.| .+.|||.+||
T Consensus       221 ~~~~~~~~~i~LLy-rpgHYdIly~  244 (244)
T PF10275_consen  221 PDNESQEPQITLLY-RPGHYDILYP  244 (244)
T ss_dssp             -SSTTSS-SEEEEE-ETBEEEEEEE
T ss_pred             CccCCCCCEEEEEE-cCCccccccC
Confidence            33335677899998 5679999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=1.1e-12  Score=123.22  Aligned_cols=94  Identities=18%  Similarity=0.378  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHhhChhHHhhhcC--ccHHHHHHh-hccCCccCchHHHHHHHHHhCCeEEEEecCCCce---eEEEcCCC
Q 018276          245 MFVRQQVVNQLKAHPEIYEGYVP--MAYSDYLKK-MNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTC---YIEILPHV  318 (358)
Q Consensus       245 ~~VR~~vV~yL~~n~d~f~~fV~--~~~~eYl~k-M~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~---~I~i~P~~  318 (358)
                      ..+|..+..+|++|+++|++|++  +++.+||.. +.....-.|||+|-||++++++.|.|....+..+   .-..+|  
T Consensus       157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp--  234 (256)
T KOG3991|consen  157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP--  234 (256)
T ss_pred             HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc--
Confidence            46789999999999999999996  689999984 5566667999999999999999999987765432   112233  


Q ss_pred             CCCCCeEEEEecCCCcceeeecC
Q 018276          319 PKSKRVIFLSFWAEVHYNSIYPE  341 (358)
Q Consensus       319 ~~~~~~I~Lsy~~~~HYdSV~p~  341 (358)
                      ..+.+.|+|.| ...|||.||++
T Consensus       235 e~s~P~I~LLY-rpGHYdilY~~  256 (256)
T KOG3991|consen  235 EASAPEIYLLY-RPGHYDILYKK  256 (256)
T ss_pred             cccCceEEEEe-cCCccccccCC
Confidence            34678899997 78999999974

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=3.2e-08  Score=96.12  Aligned_cols=120  Identities=18%  Similarity=0.114  Sum_probs=86.3

Q ss_pred             CCcEEEEecCCCChhHHHHHHHHhcC-----ChhHHHHHHHHHHHHhhChhHHhhhcC-------ccHHHHHHhhccCCc
Q 018276          215 YDLVENKVQGDGNCQFRSLSDQLYRS-----PEHHMFVRQQVVNQLKAHPEIYEGYVP-------MAYSDYLKKMNKSGE  282 (358)
Q Consensus       215 ~GL~i~~V~GDGNCLFRALS~qL~gs-----qd~H~~VR~~vV~yL~~n~d~f~~fV~-------~~~~eYl~kM~k~gt  282 (358)
                      -+++-..+.|||+|+|-+||+||.-.     -+.-+..|-.=..|...+...|.++.-       ..|++|++.|..+..
T Consensus       169 ~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~a~  248 (306)
T COG5539         169 TWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDAS  248 (306)
T ss_pred             HhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhccccc
Confidence            35566779999999999999998521     122355555555666667777776642       379999999999999


Q ss_pred             cCchHHHHHHHHHhCCeEEEEecCCCceeEEEcCCCCCCCCeEEEEecC----CCcceee
Q 018276          283 WGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWA----EVHYNSI  338 (358)
Q Consensus       283 WGg~iELqAaA~~y~v~I~V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~----~~HYdSV  338 (358)
                      ||..+|+++||..|++++.++...+.  .|.+.+...+.  +.-+.|+.    -.|||++
T Consensus       249 ~g~~~ei~qLas~lk~~~~~~nT~~~--~ik~n~c~~~~--~~e~~~~~Ha~a~GH~n~~  304 (306)
T COG5539         249 DGITIEIQQLASLLKNPHYYTNTASP--SIKCNICGTGF--VGEKDYYAHALATGHYNFG  304 (306)
T ss_pred             ccchHHHHHHHHHhcCceEEeecCCc--eEEeecccccc--chhhHHHHHHHhhcCcccc
Confidence            99999999999999999999976553  45555543222  23333332    2499986

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=3.7e-07  Score=88.88  Aligned_cols=110  Identities=17%  Similarity=0.243  Sum_probs=90.0

Q ss_pred             CCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcC-ccHHHHHHhhccCCccC-chHHHHHHHHHhCCeEE
Q 018276          224 GDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVP-MAYSDYLKKMNKSGEWG-DHVTLQAAADSYGVKVF  301 (358)
Q Consensus       224 GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~-~~~~eYl~kM~k~gtWG-g~iELqAaA~~y~v~I~  301 (358)
                      .|..|+|+|++..++.-  .-..+|..+...+.+||+.|...+. -+--.|+.++.+...|| |++|+.++++.|++.|+
T Consensus       119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~  196 (306)
T COG5539         119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH  196 (306)
T ss_pred             CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence            67999999999999753  5789999999999999999998765 58889999999999999 99999999999999999


Q ss_pred             EEecCCCceeEEEcCCCCCCCCeEEEEecCCCcceeee
Q 018276          302 VLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIY  339 (358)
Q Consensus       302 V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~  339 (358)
                      ++....+.. .++.+.  +..-.|++.| .+.|||...
T Consensus       197 ~Vdv~~~~~-dr~~~~--~~~q~~~i~f-~g~hfD~~t  230 (306)
T COG5539         197 VVDVDKDSE-DRYNSH--PYVQRISILF-TGIHFDEET  230 (306)
T ss_pred             eeecchhHH-hhccCC--hhhhhhhhhh-cccccchhh
Confidence            998765431 223332  1223366665 689999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		4e-08
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		8e-08
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		2e-07

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
            +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L  + + +  YV   ++ Y+ +
Sbjct: 46  FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 105
Query: 277 MNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHV----PKSKRVIFLSFWAE 332
             K+   G+H+ +QA A+ Y   V V      T  +E +             I +S+   
Sbjct: 106 KRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRN 165
Query: 333 VHYNSI 338
           +HYNS+
Sbjct: 166 IHYNSV 171

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 225 DGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWG 284
           DG C FR+++DQ+Y   + H  VR+   + L  + + +  YV   ++ Y+ +  K+   G
Sbjct: 54  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 285 DHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHV----PKSKRVIFLSFWAEVHYNSI 338
           +H+  QA A+ Y   V V      T  +E +             I +S+   +HYNS+
Sbjct: 114 NHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSV 171

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 225 DGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWG 284
           DG C FR+++DQ+Y   + H  VR+   + L  + + +  YV   ++ Y+ +  K+   G
Sbjct: 67  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 126
Query: 285 DHVTLQAAADSYG--VKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSI 338
           +H+  QA A+ Y   V+V+  ++     +  I  +  +  RV   S+   +HYNS+
Sbjct: 127 NHIEXQAXAEXYNRPVEVYQYSTEPINTFHGIHQNEDEPIRV---SYHRNIHYNSV 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
3pfy_A	185	OTU domain-containing protein 5; structural genomi	9e-36
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	8e-30
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-28
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	7e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	4e-06
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	2e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  127 bits (321), Expect = 9e-36
 Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 1/143 (0%)

Query: 198 PDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKA 257
              E  +H            +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L  
Sbjct: 40  ATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMK 99

Query: 258 HPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPH 317
           + + +  YV   ++ Y+ +  K+   G+H+ +QA A+ Y   V V   +           
Sbjct: 100 NADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVY-QYSTEPINTFHGI 158

Query: 318 VPKSKRVIFLSFWAEVHYNSIYP 340
                  I +S+   +HYNS+  
Sbjct: 159 HQNEDEPIRVSYHRNIHYNSVVN 181

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  112 bits (280), Expect = 8e-30
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 198 PDEEISDHQRMLD-RLQLYDLVE-NKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQL 255
              ++   Q + + R  + D  E  +  GDGNC + S+++    +   H      +    
Sbjct: 10  DWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHS--YHYIKRLT 67

Query: 256 KAHPEIYEGYVP------MAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDT 309
           ++    Y    P      ++  DYLK+M    EWG  +     A   G+ + + T     
Sbjct: 68  ESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASD 127

Query: 310 CYIEIL-PHVPKSKRVIFLSFWAEVHYNSIYP 340
                +          + L    + H++++  
Sbjct: 128 EVEAGIKFGDGDVFTAVNLLHSGQTHFDALRI 159

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  109 bits (273), Expect = 2e-28
 Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 11/157 (7%)

Query: 198 PDEEISDHQRMLD-RLQLYD-LVENKVQGDGNCQFRSLSDQLYRSPEHHMF------VRQ 249
              ++   Q + + R  + D     +  GDGNC + S+++    +   H +         
Sbjct: 10  DWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTES 69

Query: 250 QVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDT 309
                 +  PE     V ++  DYLK+M    EWG  +     A   G+ + + T     
Sbjct: 70  AARKYYQEEPE--ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASD 127

Query: 310 CYIEILPHVP-KSKRVIFLSFWAEVHYNSIYPEGELP 345
                +          + L    + H++++    +  
Sbjct: 128 EVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFE 164

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score =  102 bits (255), Expect = 7e-26
 Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIY-EGYVPMAYSDYLK 275
           L  + V  D +C F +++  +++       +R+ V  ++  +P  + +  +     DY +
Sbjct: 20  LSVHPVLDDNSCLFHAIAYGIFKQDSVRD-LREMVSKEVLNNPVKFNDAILDKPNKDYAQ 78

Query: 276 KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHY 335
            + K   WG  + +   +D+  V ++V+    D   IE      K    I + F    HY
Sbjct: 79  WILKMESWGGAIEIGIISDALAVAIYVVDI--DAVKIEKFNE-DKFDNYILILFNGI-HY 134

Query: 336 NSIYPEGELPLLD 348
           +S+       + +
Sbjct: 135 DSLTMNEFKTVFN 147

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 52/373 (13%), Positives = 103/373 (27%), Gaps = 122/373 (32%)

Query: 9   QDPDVLRWGLHQLLDI-C-TLSNSGSQNVITRYDRDSSQVGYVRECYSETE-----LAYV 61
           Q+            ++ C  L       + TR+ + +  +      +   +     L   
Sbjct: 254 QNAKAWN-----AFNLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 62  ENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGS 121
           E   ++   L      +          P      E    +P  +   S+      A   S
Sbjct: 302 EVKSLLLKYLDCRPQDL----------PR-----EVLTTNPRRL---SII-----AE--S 336

Query: 122 GKNEEEMDDSGRMVEADYQSKGEKVELEY-DEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
            ++     D+ + V  D  +   +  L   +      +  +L        +         
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-------SV--------- 380

Query: 181 QMVPVPHIPKINGDIPSP-------DEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSL 233
                   P  +  IP+        D   SD   ++++L  Y LVE           +  
Sbjct: 381 -------FPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-----------KQP 421

Query: 234 SDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGY-VPMAY-SDYLKKMNKSGEW----GDHV 287
            +     P  ++ ++ ++ N+   H  I + Y +P  + SD L        +    G H 
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH- 480

Query: 288 TLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSF-WAE-----VHYNSIYPE 341
            L+       + +F                     R++FL F + E              
Sbjct: 481 -LKNIEHPERMTLF---------------------RMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 342 GELPLLDDKKKKK 354
             L  L   K  K
Sbjct: 519 SILNTLQQLKFYK 531

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 51/371 (13%), Positives = 105/371 (28%), Gaps = 105/371 (28%)

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNN-------SVC----- 111
            + +  VL+  +  + +   +    P   + +  ++   L  YN+       +V      
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPY 137

Query: 112 -------ENDRSAAD-------GSGKN---EEEMDDSGRMVEADYQ----SKGEKVELEY 150
                     R A +       GSGK     +         + D++    +       E 
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 151 DEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLD 210
             + ++ LL+Q         ID     R +    +                I    R L 
Sbjct: 198 VLEMLQKLLYQ---------IDPNWTSRSDHSSNIKL----------RIHSIQAELRRLL 238

Query: 211 RLQLY-------DLVENK--VQG-DGNCQ------FRSLSDQL------YRSPEHHM--F 246
           + + Y         V+N       + +C+      F+ ++D L      + S +HH    
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 247 VRQQVVNQL--------KAHPEIYEGYVPMAYS---DYLKKM-NKSGEWGDHVTLQAAAD 294
              +V + L        +  P       P   S   + ++        W  HV       
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLTT 357

Query: 295 SYGVKVFVLTS--FKDTCYIE--ILP-HVPKSKRVIFLSFWAEVHYNSIYPEGELPLLDD 349
                + VL    ++   +    + P        ++ L  W +     I  +  + +   
Sbjct: 358 IIESSLNVLEPAEYRK-MFDRLSVFPPSAHIPTILLSL-IWFD----VIKSDVMVVVNKL 411

Query: 350 KKK---KKWWK 357
            K    +K  K
Sbjct: 412 HKYSLVEKQPK 422

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 245 MFVRQQVVNQLKAHPEIYEGYVPMAYS--DYLKK-MNKSGEWGDHVTLQAAADSYGVKVF 301
            F+R      ++   + +  ++       D+    +       DH+ + A + +  + + 
Sbjct: 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQ 192

Query: 302 VLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYP 340
           V    +    +        +   ++L +    HYN +Y 
Sbjct: 193 VEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNILYA 230

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 215 YDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVP--MAYSD 272
            DL+E   +        +  +    S    +++R      L+   + +E ++       +
Sbjct: 106 MDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKE 165

Query: 273 YLKK-MNKSGEWGDHVTLQAAADSYGVKVFVL---TSFKDTCYIEILPHVPKSKRVIFLS 328
           + ++ +    +  DH+ + A A +  V + V         T    I P   + K  ++L 
Sbjct: 166 FCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPK--VYLL 223

Query: 329 FWAEVHYNSIY 339
           +    HY+ +Y
Sbjct: 224 YRPG-HYDILY 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.97
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.96
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.96
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.85
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.81
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.77
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.72
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.49
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.46

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=1e-35  Score=270.05  Aligned_cols=139  Identities=24%  Similarity=0.427  Sum_probs=103.8

Q ss_pred             hhhHHHHHHHHHhhCCcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccC
Q 018276          201 EISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKS  280 (358)
Q Consensus       201 ~~~d~qrL~~rL~~~GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~  280 (358)
                      ...+.+-+.+.|+.+||++++|+|||||||||||+||++++..|..||+.|++||++|++.|.+||+++|++||++|+++
T Consensus        43 ~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~  122 (185)
T 3pfy_A           43 EQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN  122 (185)
T ss_dssp             HHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC--------------
T ss_pred             HHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCC
Confidence            33344444444479999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCchHHHHHHHHHhCCeEEEEecCCCceeEEEcC-CCCCCCCeEEEEecCCCcceeeecC
Q 018276          281 GEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILP-HVPKSKRVIFLSFWAEVHYNSIYPE  341 (358)
Q Consensus       281 gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~I~i~P-~~~~~~~~I~Lsy~~~~HYdSV~p~  341 (358)
                      ++|||++||+|||++|+++|.|++....  .+.+++ ......++|+|+|++++|||||+..
T Consensus       123 ~~WGg~iEL~AlS~~~~v~I~V~~~~~~--~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p  182 (185)
T 3pfy_A          123 NCHGNHIEMQAMAEMYNRPVEVYQYSTE--PINTFHGIHQNEDEPIRVSYHRNIHYNSVVNP  182 (185)
T ss_dssp             ---CCHHHHHHHHHHHTSCEEEESSCSS--CSEEECTTSCCTTSCEEEEEETTTEEEEEECC
T ss_pred             CccchHHHHHHHHHhhCCcEEEEECCCC--CeEEecCccCCCCCEEEEEECCCCCcccccCC
Confidence            9999999999999999999999987542  233443 2334678999999999999999854

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.97  E-value=3.3e-32  Score=251.09  Aligned_cols=126  Identities=17%  Similarity=0.262  Sum_probs=111.3

Q ss_pred             hhCCcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHh-hhcCccHHHHHHhhccCCccCchHHHHH
Q 018276          213 QLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYE-GYVPMAYSDYLKKMNKSGEWGDHVTLQA  291 (358)
Q Consensus       213 ~~~GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~-~fV~~~~~eYl~kM~k~gtWGg~iELqA  291 (358)
                      ...||++++|+|||||||||||+|| +++..|..||+.|++||++||+.|. .|++++|++||++|+++++|||++||+|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A   94 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI   94 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence            3457999999999999999999999 9999999999999999999999995 6778999999999999999999999999


Q ss_pred             HHHHhCCeEEEEecCCCceeEEEcCCCCCCCCeEEEEecCCCcceeeecCCC
Q 018276          292 AADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGE  343 (358)
Q Consensus       292 aA~~y~v~I~V~ts~~~~~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~p~~d  343 (358)
                      ||++|+++|.|++... ...+.|.+..  ..++|+|+|+ ++|||||++..+
T Consensus        95 ls~~~~~~I~V~~~~~-~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~~~d  142 (212)
T 3by4_A           95 ISDALAVAIYVVDIDA-VKIEKFNEDK--FDNYILILFN-GIHYDSLTMNEF  142 (212)
T ss_dssp             HHHHHTCEEEEEETTT-TEEEEESTTT--CSEEEEEEEC-SSCEEEEEETTT
T ss_pred             HHHHHCCCEEEEECCC-CCeEEeCCCC--CCCeEEEEEc-CCcceEEecCCC
Confidence            9999999999999753 2344555532  5679999997 799999998433

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.96  E-value=1.2e-29  Score=229.95  Aligned_cols=126  Identities=19%  Similarity=0.352  Sum_probs=107.9

Q ss_pred             cEEEEecCCCChhHHHHHHHHhcC-Chh-----HHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccCCccCchHHHH
Q 018276          217 LVENKVQGDGNCQFRSLSDQLYRS-PEH-----HMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQ  290 (358)
Q Consensus       217 L~i~~V~GDGNCLFRALS~qL~gs-qd~-----H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELq  290 (358)
                      +.+.+|+|||||||||||+||+++ +.+     |..||+.|++||++|++.  .+++++|++||++|+++++|||++||+
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~  108 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence            678889999999999999999998 666     999999999999999999  457899999999999999999999999


Q ss_pred             HHHHHhCCeEEEEecCCCc---eeEEEcCCCCCCCCeEEEEecCCCcceeeecCCCCCC
Q 018276          291 AAADSYGVKVFVLTSFKDT---CYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPL  346 (358)
Q Consensus       291 AaA~~y~v~I~V~ts~~~~---~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~p~~diP~  346 (358)
                      |+|++|+++|.|++.....   ..+.+.+.  ...++|+|+|++++|||+|++..+-+.
T Consensus       109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~--~~~~~I~L~Y~g~~HYdsl~~~~~~~~  165 (185)
T 3phx_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFET  165 (185)
T ss_dssp             HHHHHHCCCEEEEEC--CCBCCEEEEESSC--CTTTSEEEEEETTTEEEEEEECGGGC-
T ss_pred             HHHHHHCCcEEEEEecCCCCceEEEEcCCC--CCCCEEEEEECCCcCchhceECCCCCC
Confidence            9999999999999865543   23445443  347899999988899999998765543

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.96  E-value=3.7e-29  Score=232.37  Aligned_cols=126  Identities=19%  Similarity=0.352  Sum_probs=110.0

Q ss_pred             cEEEEecCCCChhHHHHHHHHhcC-Chh-----HHHHHHHHHHHHhhChhHHhhhcCccHHHHHHhhccCCccCchHHHH
Q 018276          217 LVENKVQGDGNCQFRSLSDQLYRS-PEH-----HMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQ  290 (358)
Q Consensus       217 L~i~~V~GDGNCLFRALS~qL~gs-qd~-----H~~VR~~vV~yL~~n~d~f~~fV~~~~~eYl~kM~k~gtWGg~iELq  290 (358)
                      +.+.+|+|||||||||||+||+++ +.+     |..||+.|++||++|++.  .+++++|++||++|+++++|||++||+
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~  108 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence            778899999999999999999998 666     999999999999999999  457899999999999999999999999


Q ss_pred             HHHHHhCCeEEEEecCCC--c-eeEEEcCCCCCCCCeEEEEecCCCcceeeecCCCCCC
Q 018276          291 AAADSYGVKVFVLTSFKD--T-CYIEILPHVPKSKRVIFLSFWAEVHYNSIYPEGELPL  346 (358)
Q Consensus       291 AaA~~y~v~I~V~ts~~~--~-~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~p~~diP~  346 (358)
                      |+|++|+++|.|++....  . ..+.+.+.  ...++|+|+|++++|||+|++..+.+.
T Consensus       109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~~~  165 (219)
T 3phu_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFET  165 (219)
T ss_dssp             HHHHHTTCCEEEEEESSSSBEEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTTCC
T ss_pred             HHHHHhCCCEEEEEecCCCCceeEEEecCC--CCCCeEEEEECCCcCchhheECCCCCC
Confidence            999999999999976654  2 23455553  346899999998899999999876543

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.85  E-value=6.4e-21  Score=178.11  Aligned_cols=95  Identities=14%  Similarity=0.331  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhhChhHHhhhcCc--cHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCCceeEE--EcCCCC
Q 018276          245 MFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIE--ILPHVP  319 (358)
Q Consensus       245 ~~VR~~vV~yL~~n~d~f~~fV~~--~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~I~--i~P~~~  319 (358)
                      ..+|..+..||++|++.|.+|+++  ++++||+ .+...++|||+++|+|||++++++|.|+...+....+.  .+|.  
T Consensus       133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~--  210 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE--  210 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC--
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC--
Confidence            458999999999999999999974  8999999 89999999999999999999999999998765431111  2232  


Q ss_pred             CCCCeEEEEecCCCcceeeecCC
Q 018276          320 KSKRVIFLSFWAEVHYNSIYPEG  342 (358)
Q Consensus       320 ~~~~~I~Lsy~~~~HYdSV~p~~  342 (358)
                      ...+.|+|+|.. +|||+|+|.+
T Consensus       211 ~~~~~I~LlY~p-gHYdily~~~  232 (234)
T 1tff_A          211 AATPSVYLLYKT-SHYNILYAAD  232 (234)
T ss_dssp             CSSCSEEEEEET-TEEEEEEECC
T ss_pred             CCCCeEEEEECC-CCceecccCC
Confidence            346789999974 6999999864

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.81  E-value=5.3e-19  Score=164.97  Aligned_cols=93  Identities=17%  Similarity=0.345  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHhhChhHHhhhcCc--cHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCCc---eeEEEcCCC
Q 018276          245 MFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDT---CYIEILPHV  318 (358)
Q Consensus       245 ~~VR~~vV~yL~~n~d~f~~fV~~--~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~---~~I~i~P~~  318 (358)
                      ..+|..++.||++|++.|.+|+++  ++++||+ .+...++|||+++|+|||++|+++|.|+...+..   .....+|. 
T Consensus       136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~-  214 (234)
T 2zfy_A          136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE-  214 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST-
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC-
Confidence            378999999999999999999975  8999997 6999999999999999999999999999876542   12223443 


Q ss_pred             CCCCCeEEEEecCCCcceeeec
Q 018276          319 PKSKRVIFLSFWAEVHYNSIYP  340 (358)
Q Consensus       319 ~~~~~~I~Lsy~~~~HYdSV~p  340 (358)
                       ...+.|+|+|.. +|||+|||
T Consensus       215 -~~~p~I~LlY~p-gHYdiLy~  234 (234)
T 2zfy_A          215 -GSEPKVYLLYRP-GHYDILYK  234 (234)
T ss_dssp             -TCCCSEEEEEET-TEEEEEEC
T ss_pred             -CCCCeEEEEECC-CCcccCCC
Confidence             345789999975 69999996

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.77  E-value=3.4e-18  Score=164.08  Aligned_cols=103  Identities=20%  Similarity=0.293  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhhChhHHhhhcC--ccHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCCc----eeEE-Ec
Q 018276          244 HMFVRQQVVNQLKAHPEIYEGYVP--MAYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDT----CYIE-IL  315 (358)
Q Consensus       244 H~~VR~~vV~yL~~n~d~f~~fV~--~~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~----~~I~-i~  315 (358)
                      -..||..+..||+.|++.|.+|+.  +++++||+ +|...++||||++|+|||++|+++|.|+...+..    .... + 
T Consensus       170 v~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-  248 (284)
T 4dhi_B          170 LMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-  248 (284)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-
T ss_pred             HHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-
Confidence            347899999999999999999996  48999999 8999999999999999999999999998765421    1223 4 


Q ss_pred             CCCCC-CCCeEEEEecCCCcceeeecCCCCCCCc
Q 018276          316 PHVPK-SKRVIFLSFWAEVHYNSIYPEGELPLLD  348 (358)
Q Consensus       316 P~~~~-~~~~I~Lsy~~~~HYdSV~p~~diP~~~  348 (358)
                      |.... ..+.|+|.| .+.|||.|||....|.++
T Consensus       249 p~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~~~  281 (284)
T 4dhi_B          249 PSDDQQIAPEITLLY-RPGHYDVIYKKDSTEASE  281 (284)
T ss_dssp             SCCCSCCCCSEEEEE-ETTEEEEEEECC------
T ss_pred             CCCCCCCCCEEEEee-cCCCccccccCCCCchhh
Confidence            75432 347799998 579999999998776654

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.72  E-value=1.3e-17  Score=166.12  Aligned_cols=94  Identities=18%  Similarity=0.344  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhhChhHHhhhcCc--cHHHHHH-hhccCCccCchHHHHHHHHHhCCeEEEEecCCC---ceeEEEcCC
Q 018276          244 HMFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLK-KMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKD---TCYIEILPH  317 (358)
Q Consensus       244 H~~VR~~vV~yL~~n~d~f~~fV~~--~~~eYl~-kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~---~~~I~i~P~  317 (358)
                      ...+|..+..||+.|++.|.+|+++  ++++||+ .|...++||||++|+|||+.|+++|.|+...+.   ......+|.
T Consensus       300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~  379 (399)
T 4ddg_A          300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE  379 (399)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred             HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence            4568999999999999999999974  7999999 899999999999999999999999999865542   111123453


Q ss_pred             CCCCCCeEEEEecCCCcceeeec
Q 018276          318 VPKSKRVIFLSFWAEVHYNSIYP  340 (358)
Q Consensus       318 ~~~~~~~I~Lsy~~~~HYdSV~p  340 (358)
                        ...+.|+|.| .+.|||.|||
T Consensus       380 --~~~~~I~LLY-rPgHYDiLY~  399 (399)
T 4ddg_A          380 --GSEPKVYLLY-RPGHYDILYK  399 (399)
T ss_dssp             --TCCCCCEEEE-ETBEEEEEEC
T ss_pred             --CCCCEEEEEE-cCCccccCCC
Confidence              3467899998 6789999996

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.49  E-value=1.2e-06  Score=87.76  Aligned_cols=128  Identities=13%  Similarity=0.134  Sum_probs=93.3

Q ss_pred             CcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHH-hh---------------hc--C----ccHHHH
Q 018276          216 DLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIY-EG---------------YV--P----MAYSDY  273 (358)
Q Consensus       216 GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f-~~---------------fV--~----~~~~eY  273 (358)
                      -|......||||||-+|+|..++|-+|....||+.+.+-|++....| ..               |.  +    .+|+.-
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i  267 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI  267 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999998754433 11               11  1    245555


Q ss_pred             HHhhccCCccCchHHHHHHHHHhCCeEEEEecCCCcee-------E----EEcCCCC----CCCCeEEEEecCCCcceee
Q 018276          274 LKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCY-------I----EILPHVP----KSKRVIFLSFWAEVHYNSI  338 (358)
Q Consensus       274 l~kM~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~-------I----~i~P~~~----~~~~~I~Lsy~~~~HYdSV  338 (358)
                      ++.-+.+|.=--++-+.++|+++++||+|+...--..+       +    .+.|-..    -.+.||.|+|.+ .||.+|
T Consensus       268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHFsaL  346 (454)
T 3zrh_A          268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHFSAL  346 (454)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEEEEE
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cceeee
Confidence            55556677656678899999999999999974221100       1    1344322    235799999975 799999


Q ss_pred             ecCCCC
Q 018276          339 YPEGEL  344 (358)
Q Consensus       339 ~p~~di  344 (358)
                      ++..+-
T Consensus       347 V~~~~~  352 (454)
T 3zrh_A          347 VAMEND  352 (454)
T ss_dssp             EEBCCC
T ss_pred             eecccc
Confidence            987653

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.46  E-value=9.2e-07  Score=87.39  Aligned_cols=127  Identities=17%  Similarity=0.327  Sum_probs=87.6

Q ss_pred             CcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChh-HH-hh----------hc-----------CccHHH
Q 018276          216 DLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPE-IY-EG----------YV-----------PMAYSD  272 (358)
Q Consensus       216 GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d-~f-~~----------fV-----------~~~~~e  272 (358)
                      -|....+.||||||.+|+|..++|-.|....+|+.+.+-|+.... .| ..          |.           ..+|+.
T Consensus       111 rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~  190 (390)
T 3dkb_A          111 KLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDN  190 (390)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHH
T ss_pred             ceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHH
Confidence            367788999999999999999999999999999999999987642 22 11          21           124555


Q ss_pred             HHHhhccC------Cc-c--CchHHHHHHHHHhCCeEEEEecC--CC---c-ee--E----EEcCC----CCCCCCeEEE
Q 018276          273 YLKKMNKS------GE-W--GDHVTLQAAADSYGVKVFVLTSF--KD---T-CY--I----EILPH----VPKSKRVIFL  327 (358)
Q Consensus       273 Yl~kM~k~------gt-W--Gg~iELqAaA~~y~v~I~V~ts~--~~---~-~~--I----~i~P~----~~~~~~~I~L  327 (358)
                      -++.-+..      |. .  --++-+.++|++++|||+|+...  ++   . .+  +    .+.|-    ..-.+.||.|
T Consensus       191 Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~L  270 (390)
T 3dkb_A          191 LIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVL  270 (390)
T ss_dssp             HHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEE
T ss_pred             HHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEE
Confidence            45433322      11 1  24677899999999999999532  11   1 11  1    13342    2234679999


Q ss_pred             EecCCCcceeeecCCC
Q 018276          328 SFWAEVHYNSIYPEGE  343 (358)
Q Consensus       328 sy~~~~HYdSV~p~~d  343 (358)
                      +|.+ +||.+|++..+
T Consensus       271 gY~s-~HFsaLV~me~  285 (390)
T 3dkb_A          271 GYDS-HHFVPLVTLKD  285 (390)
T ss_dssp             EECS-SCEEEEEEBCS
T ss_pred             Eecc-Cceeeeeeccc
Confidence            9965 89999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	5e-12

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (152), Expect = 5e-12
 Identities = 16/135 (11%), Positives = 44/135 (32%), Gaps = 5/135 (3%)

Query: 210 DRLQLYDLVENKVQGDGNCQ-FRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPM 268
           +    +  V   V+ DG+      + +    S     F+R      ++   + +  ++  
Sbjct: 91  NFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDE 150

Query: 269 AYS---DYLKKMNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSKRVI 325
                     ++       DH+ + A + +  + + V    +    +        +   +
Sbjct: 151 EMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSV 210

Query: 326 FLSFWAEVHYNSIYP 340
           +L +    HYN +Y 
Sbjct: 211 YLLY-KTSHYNILYA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.83

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.2e-21  Score=173.04  Aligned_cols=96  Identities=14%  Similarity=0.285  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhhChhHHhhhcC--ccHHHHHHh-hccCCccCchHHHHHHHHHhCCeEEEEecCCCceeEEEcCCCCCCC
Q 018276          246 FVRQQVVNQLKAHPEIYEGYVP--MAYSDYLKK-MNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSK  322 (358)
Q Consensus       246 ~VR~~vV~yL~~n~d~f~~fV~--~~~~eYl~k-M~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~I~i~P~~~~~~  322 (358)
                      .+|..++.||++|++.|.+|+.  +++++||.+ |.+.++|||++||+|+|++|+++|.|+..++....+..........
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~  207 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT  207 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence            4799999999999999999995  589999985 8999999999999999999999999998766543222222223456


Q ss_pred             CeEEEEecCCCcceeeecCC
Q 018276          323 RVIFLSFWAEVHYNSIYPEG  342 (358)
Q Consensus       323 ~~I~Lsy~~~~HYdSV~p~~  342 (358)
                      +.|+|+| .+.|||+|||.+
T Consensus       208 ~~I~Lly-~pgHYdiLY~~~  226 (228)
T d1tffa_         208 PSVYLLY-KTSHYNILYAAD  226 (228)
T ss_dssp             CSEEEEE-ETTEEEEEEECC
T ss_pred             CEEEEEe-CCCCcccCccCC
Confidence            7899998 568999999875