Citrus Sinensis ID: 018278
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 358 | 2.2.26 [Sep-21-2011] | |||||||
| P17859 | 421 | Alpha-amylase OS=Vigna mu | N/A | no | 0.941 | 0.800 | 0.806 | 1e-164 | |
| Q8VZ56 | 423 | Alpha-amylase 1 OS=Arabid | yes | no | 0.941 | 0.796 | 0.720 | 1e-142 | |
| P27933 | 436 | Alpha-amylase isozyme 3D | yes | no | 0.885 | 0.727 | 0.703 | 1e-137 | |
| P27932 | 440 | Alpha-amylase isozyme 3A | no | no | 0.952 | 0.775 | 0.640 | 1e-134 | |
| P27934 | 437 | Alpha-amylase isozyme 3E | no | no | 0.932 | 0.764 | 0.646 | 1e-134 | |
| P27937 | 438 | Alpha-amylase isozyme 3B | no | no | 0.885 | 0.723 | 0.694 | 1e-133 | |
| P27939 | 437 | Alpha-amylase isozyme 3C | no | no | 0.885 | 0.725 | 0.690 | 1e-133 | |
| P04063 | 427 | Alpha-amylase type B isoz | N/A | no | 0.899 | 0.754 | 0.682 | 1e-131 | |
| P04747 | 368 | Alpha-amylase type B isoz | N/A | no | 0.899 | 0.875 | 0.679 | 1e-130 | |
| P04750 | 429 | Alpha-amylase type B isoz | N/A | no | 0.938 | 0.783 | 0.647 | 1e-129 |
| >sp|P17859|AMYA_VIGMU Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 578 bits (1489), Expect = e-164, Method: Compositional matrix adjust.
Identities = 275/341 (80%), Positives = 301/341 (88%), Gaps = 4/341 (1%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC LL +F +SPALLFQGFNWESS K GGWYNSLKNSIPDL+NAGITHV
Sbjct: 4 FSRLSIFCLFISLLPLF---SSPALLFQGFNWESSKK-GGWYNSLKNSIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDASKYGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASKYGSKNELKSLIAAFHEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D R DWGPSFICR D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDSRQDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTEIGFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWDS+SYG DGKP
Sbjct: 180 RELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTKPDFAVGEKWDSISYGQDGKP 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKPPG IG+ P+
Sbjct: 240 NYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP I
Sbjct: 300 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSI 340
|
Vigna mungo (taxid: 3915) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1 |
| >sp|Q8VZ56|AMY1_ARATH Alpha-amylase 1 OS=Arabidopsis thaliana GN=AMY1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/344 (72%), Positives = 283/344 (82%), Gaps = 7/344 (2%)
Query: 1 MSTLKSFCFLSFLLAIFLP-FT-SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGIT 58
M++L + F S L I P FT S LLFQ FNWES K GG+YNSL NSI D++NAGIT
Sbjct: 1 MTSLHTLLFSSLLFFIVFPTFTFSSTLLFQSFNWESWKKEGGFYNSLHNSIDDIANAGIT 60
Query: 59 HVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118
H+WLPPPSQSVAP+GY+PG+LYDL++SKYGS+A+LKSLI+A QKGIK LAD+VINHRTA
Sbjct: 61 HLWLPPPSQSVAPEGYLPGKLYDLNSSKYGSEAELKSLIKALNQKGIKALADIVINHRTA 120
Query: 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178
ERKD + YC FEGGTSDDRLDW PSF+CR D ++ G GN DTG DF APDIDHLNPR
Sbjct: 121 ERKDDKCGYCYFEGGTSDDRLDWDPSFVCRNDPKFP-GTGNLDTGGDFDGAPDIDHLNPR 179
Query: 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDG 238
VQKELS+WMNWLKTEIGF GWRFD+V+GYA SITK+Y++NTSPDFAVGEKWD + YG DG
Sbjct: 180 VQKELSEWMNWLKTEIGFHGWRFDYVRGYASSITKLYVQNTSPDFAVGEKWDDMKYGGDG 239
Query: 239 KPDANQDGHRGALKDWVQAAGGAV-AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGI 297
K D +Q+ HR LK W++ AGG V AFDFTTKGILQ+AV+GELWRLKDS GKPPG IGI
Sbjct: 240 KLDYDQNEHRSGLKQWIEEAGGGVLTAFDFTTKGILQSAVKGELWRLKDSQGKPPGMIGI 299
Query: 298 LPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
+P NAVTFIDNHD T R W FPSDKV+LGY YILTHPGTPCI
Sbjct: 300 MPGNAVTFIDNHD---TFRTWVFPSDKVLLGYVYILTHPGTPCI 340
|
Possesses alpha-amylase activity in vitro, but seems not required for breakdown of transitory starch in leaves. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27933|AMY3D_ORYSJ Alpha-amylase isozyme 3D OS=Oryza sativa subsp. japonica GN=AMY1.3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 489 bits (1258), Expect = e-137, Method: Compositional matrix adjust.
Identities = 223/317 (70%), Positives = 257/317 (81%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES + GGWYN LK + D++ AG+THVWLPPPS SVAPQGYMPGRLYDLDA
Sbjct: 27 VLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVTHVWLPPPSHSVAPQGYMPGRLYDLDA 86
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI AF KG++C+AD+VINHR AE+KD RG+YC+FEGGT DDRLDWGP
Sbjct: 87 SKYGTAAELKSLIAAFHGKGVQCVADVVINHRCAEKKDARGVYCVFEGGTPDDRLDWGPG 146
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
IC D +YSDG G+ DTGE F APDIDHLNPRVQ+EL+DW+NWLK+++GFDGWR DF
Sbjct: 147 MICSDDTQYSDGTGHRDTGEGFGAAPDIDHLNPRVQRELTDWLNWLKSDVGFDGWRLDFA 206
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
KGY+ I K+Y+E+ P F V E W+SLSY DGKP ANQD R L +WV A GG
Sbjct: 207 KGYSTDIAKMYVESCKPGFVVAEIWNSLSYNGDGKPAANQDQGRQELVNWVNAVGGPAMT 266
Query: 265 FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
FDFTTKG+LQA VQGELWRL+D NGK G IG LP+ AVTF+DNHDTGSTQ+LWPFPSDK
Sbjct: 267 FDFTTKGLLQAGVQGELWRLRDGNGKAAGMIGWLPEKAVTFVDNHDTGSTQKLWPFPSDK 326
Query: 325 VMLGYAYILTHPGTPCI 341
VM GYAYILTHPG PCI
Sbjct: 327 VMQGYAYILTHPGVPCI 343
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27932|AMY3A_ORYSJ Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica GN=AMY1.2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 219/342 (64%), Positives = 267/342 (78%), Gaps = 1/342 (0%)
Query: 1 MSTLKSFCFLSFL-LAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITH 59
M+ L F ++ L L + +LFQGFNW+S K GGWYN LK+ + D+++AG+TH
Sbjct: 5 MAALCGFLLVALLWLTPDVAHAQTQILFQGFNWDSWKKQGGWYNMLKDQVGDIASAGVTH 64
Query: 60 VWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119
VWLPPP+ SV+PQGYMPGRLYDL+ASKYG++A+LKSLI AF KGIKC+AD+V+NHR A+
Sbjct: 65 VWLPPPTHSVSPQGYMPGRLYDLNASKYGTKAELKSLIAAFHAKGIKCVADIVVNHRCAD 124
Query: 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179
KDGRG+YCIF+GG LDWGPS IC D +YSDG G+ DTG DF APDIDHLNP V
Sbjct: 125 DKDGRGVYCIFKGGGPRGCLDWGPSMICCDDTQYSDGTGHRDTGADFAAAPDIDHLNPLV 184
Query: 180 QKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGK 239
Q+ELSDW+ WL+ ++GFDGWR DF KGY+ ++ + Y++N P F V E W+SLSY DGK
Sbjct: 185 QRELSDWLRWLRRDVGFDGWRLDFAKGYSAAVARTYVQNARPSFVVAEIWNSLSYDGDGK 244
Query: 240 PDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP 299
P ANQDG R L +WV+ GG AFDFTTKGILQ+AVQGELWR++D +GK PG IG P
Sbjct: 245 PAANQDGQRQELVNWVKQVGGPATAFDFTTKGILQSAVQGELWRMRDKDGKAPGMIGWYP 304
Query: 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
+ AVTF+DNHDTGSTQR+WPFPSDKV+LGYAYILTHPG PCI
Sbjct: 305 EKAVTFVDNHDTGSTQRMWPFPSDKVILGYAYILTHPGVPCI 346
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27934|AMY3E_ORYSJ Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1227), Expect = e-134, Method: Compositional matrix adjust.
Identities = 216/334 (64%), Positives = 258/334 (77%)
Query: 8 CFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67
C + +L + +LFQGFNWES K GGWYN L + ++++ G THVWLPPPS
Sbjct: 10 CVVFAVLCLASSLAQAQVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSH 69
Query: 68 SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIY 127
SV+PQGYMPGRLYDLDASKYG++A+LKSLI+AF K ++CLAD+VINHR A+ KD RG+Y
Sbjct: 70 SVSPQGYMPGRLYDLDASKYGTEAELKSLIEAFHDKNVECLADIVINHRCADYKDSRGVY 129
Query: 128 CIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWM 187
C+FEGGT D RLDWGP IC D +YS+G+G+ DTG F APDIDHLNPRVQ+EL+DW+
Sbjct: 130 CVFEGGTPDGRLDWGPDMICSDDTQYSNGRGHRDTGAGFGAAPDIDHLNPRVQRELTDWL 189
Query: 188 NWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGH 247
NWL+T++GFDGWR DF KGY+ + ++Y++NT+P F VGE W SL Y DGKP NQD
Sbjct: 190 NWLRTDLGFDGWRLDFAKGYSAPLARIYVDNTNPTFVVGEIWSSLIYNGDGKPSTNQDAD 249
Query: 248 RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFID 307
R L +WV+ G AFDFTTKGILQAAVQGELWRL D NGK PG +G +P AVTF+D
Sbjct: 250 RQELVNWVEGVGKPATAFDFTTKGILQAAVQGELWRLHDGNGKAPGLMGWMPDQAVTFVD 309
Query: 308 NHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
NHDTGSTQ LWPFPSDKVM GYAYILTHPG PCI
Sbjct: 310 NHDTGSTQSLWPFPSDKVMQGYAYILTHPGIPCI 343
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27937|AMY3B_ORYSJ Alpha-amylase isozyme 3B OS=Oryza sativa subsp. japonica GN=AMY1.6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 220/317 (69%), Positives = 252/317 (79%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES K GGWYN L + D++ G+THVWLPPPS SVAPQGYMPGRLYDLDA
Sbjct: 28 VLFQGFNWESWKKQGGWYNFLHGHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLYDLDA 87
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+L+SLI AF KGIKC+AD+VINHR A+ KD RGIYCIFEGGT D RLDWGP
Sbjct: 88 SKYGTGAELRSLIAAFHSKGIKCVADIVINHRCADYKDSRGIYCIFEGGTPDSRLDWGPD 147
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
IC D +YS+G+G+ DTG DF APDIDHLN RVQ ELSDW+NWLK+++GFDGWR DF
Sbjct: 148 MICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQTELSDWLNWLKSDVGFDGWRLDFA 207
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
KGY+ ++ K Y++NT P F V E W ++ Y +G+P NQDG R L +W QA GG +A
Sbjct: 208 KGYSAAVAKTYVDNTDPSFVVAEIWSNMRYDGNGEPSWNQDGDRQELVNWAQAVGGPASA 267
Query: 265 FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
FDFTTKG LQAAVQGELWR+KD NGK PG IG LP+ AVTFIDNHDTGSTQ WPFPSDK
Sbjct: 268 FDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPEKAVTFIDNHDTGSTQNSWPFPSDK 327
Query: 325 VMLGYAYILTHPGTPCI 341
VM GYAYILTHPG PCI
Sbjct: 328 VMQGYAYILTHPGVPCI 344
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27939|AMY3C_ORYSJ Alpha-amylase isozyme 3C OS=Oryza sativa subsp. japonica GN=AMY1.7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/317 (69%), Positives = 252/317 (79%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES K GGWYN L + + D++ G+THVWLPPPS SVAPQGYMPGRLYDLDA
Sbjct: 28 VLFQGFNWESWKKQGGWYNFLHSHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLYDLDA 87
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+L+SLI AF K IKC+AD+VINHR A+ KD RGIYCIFEGGT D RLDWGP
Sbjct: 88 SKYGTGAELRSLIAAFHSKSIKCVADIVINHRCADYKDSRGIYCIFEGGTPDSRLDWGPD 147
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
IC D +YS+G+G+ DTG DF APDIDHLN RVQ ELSDW+NWLK+++GFDGWR DF
Sbjct: 148 MICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQTELSDWLNWLKSDVGFDGWRLDFA 207
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
KGY+ ++ K Y++NT P F V E W ++ Y +G+P NQDG R L +W QA GG +A
Sbjct: 208 KGYSATVAKTYVDNTDPSFVVAEIWSNMRYDGNGEPSWNQDGDRQELVNWAQAVGGPASA 267
Query: 265 FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
FDFTTKG LQAAVQGELWR+KD NGK PG IG LP+ AVTFIDNHDTGSTQ WPFPSDK
Sbjct: 268 FDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPEKAVTFIDNHDTGSTQNSWPFPSDK 327
Query: 325 VMLGYAYILTHPGTPCI 341
VM GYAYILTHPG PCI
Sbjct: 328 VMQGYAYILTHPGVPCI 344
|
Important for breakdown of endosperm starch during germination. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P04063|AMY2_HORVU Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/324 (68%), Positives = 251/324 (77%), Gaps = 2/324 (0%)
Query: 20 FTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL 79
S +LFQGFNWES GGWYN L + D++ AGITHVWLPP SQSVA QGYMPGRL
Sbjct: 21 LASGQVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRL 80
Query: 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 139
YDLDASKYG++A LKSLI A KG+K +AD+VINHRTAE KDGRGIYCIFEGGT D RL
Sbjct: 81 YDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARL 140
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199
DWGP ICR D+ Y+DG GN DTG DF APDIDHLN RVQKEL +W+NWLK +IGFDGW
Sbjct: 141 DWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGW 200
Query: 200 RFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG 259
RFDF KGY+ + K+Y++ + P FAV E W SL+YG DGKP+ NQD HR L +WV G
Sbjct: 201 RFDFAKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNWVDKVG 260
Query: 260 GA--VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRL 317
G FDFTTKGIL AV+GELWRL+ ++GK PG IG P AVTF+DNHDTGSTQ +
Sbjct: 261 GKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQHM 320
Query: 318 WPFPSDKVMLGYAYILTHPGTPCI 341
WPFPSD+VM GYAYILTHPGTPCI
Sbjct: 321 WPFPSDRVMQGYAYILTHPGTPCI 344
|
Hordeum vulgare (taxid: 4513) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P04747|AMY3_HORVU Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/324 (67%), Positives = 251/324 (77%), Gaps = 2/324 (0%)
Query: 20 FTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL 79
S +LFQGFNWES GGWYN L + D++ AGITHVWLPP SQSVA QGYMPGRL
Sbjct: 21 LASGQVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRL 80
Query: 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 139
YDLDASKYG++A LKSLI A KG+K +AD+VINHRTAE KDGRGIYCIFEG T D RL
Sbjct: 81 YDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGVTPDARL 140
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199
DWGP ICR D+ Y+DG GN DTG DF APDIDHLN RVQKEL++W+NWLK +IGFDGW
Sbjct: 141 DWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELAEWLNWLKADIGFDGW 200
Query: 200 RFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG 259
RFDF KGY+ + K+Y++ + P FAV E W SL+YG DGKP+ NQD HR L +WV G
Sbjct: 201 RFDFAKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNWVDKVG 260
Query: 260 GA--VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRL 317
G FDFTTKGIL AV+GELWRL+ ++GK PG IG P AVTF+DNHDTGSTQ +
Sbjct: 261 GKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQHM 320
Query: 318 WPFPSDKVMLGYAYILTHPGTPCI 341
WPFPSD+VM GYAYILTHPGTPCI
Sbjct: 321 WPFPSDRVMQGYAYILTHPGTPCI 344
|
Hordeum vulgare (taxid: 4513) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P04750|AMY6_HORVU Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/340 (64%), Positives = 253/340 (74%), Gaps = 4/340 (1%)
Query: 6 SFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP 65
S LL + S +LFQGFNWES GGWYN L + D++ AG+THVWLPP
Sbjct: 7 SLSLFIVLLGLSCSLASGQVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGVTHVWLPPA 66
Query: 66 SQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125
SQSVA QGYMPGRLYDLDASKYG++A LKSLI A K +K +AD+VINHRTAERKDGRG
Sbjct: 67 SQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKAVKAIADIVINHRTAERKDGRG 126
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGN--DDTGEDFQPAPDIDHLNPRVQKEL 183
IYCIFEGGT D RLDWGP ICR D+ Y DG GN T DF APDIDHLNPRVQKEL
Sbjct: 127 IYCIFEGGTPDARLDWGPHMICRDDRPYPDGTGNRPTRTRADFGAAPDIDHLNPRVQKEL 186
Query: 184 SDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDAN 243
+W+NWL+T+ GFDGWRFDF KGY+ + K+Y++ + P FAV E W SL+YG DGKP+ N
Sbjct: 187 VEWLNWLRTDDGFDGWRFDFAKGYSADVAKIYVDRSEPSFAVAEIWTSLAYGGDGKPNLN 246
Query: 244 QDGHRGALKDWVQAAGGA--VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQN 301
QD HR L +WV GG+ FDFTTKGIL AV+GELWRL+ ++GK PG IG P
Sbjct: 247 QDPHRQELVNWVNKVGGSGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAK 306
Query: 302 AVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
AVTF+DNHDTGSTQ +WPFPSD+VM GYAYILTHPG PCI
Sbjct: 307 AVTFVDNHDTGSTQHMWPFPSDRVMQGYAYILTHPGNPCI 346
|
Hordeum vulgare (taxid: 4513) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 358 | ||||||
| 224137490 | 423 | predicted protein [Populus trichocarpa] | 0.938 | 0.794 | 0.824 | 1e-166 | |
| 255538306 | 422 | alpha-amylase, putative [Ricinus communi | 0.935 | 0.793 | 0.816 | 1e-163 | |
| 224063525 | 404 | predicted protein [Populus trichocarpa] | 0.888 | 0.787 | 0.861 | 1e-162 | |
| 113781 | 421 | RecName: Full=Alpha-amylase; AltName: Fu | 0.941 | 0.800 | 0.806 | 1e-162 | |
| 228404 | 421 | alpha amylase | 0.941 | 0.800 | 0.803 | 1e-162 | |
| 30962522 | 421 | alpha-amylase [Vigna angularis] | 0.941 | 0.800 | 0.806 | 1e-162 | |
| 255538308 | 1113 | pentatricopeptide repeat-containing prot | 0.930 | 0.299 | 0.804 | 1e-161 | |
| 388508160 | 421 | unknown [Medicago truncatula] | 0.949 | 0.807 | 0.788 | 1e-157 | |
| 357437821 | 421 | Alpha-amylase [Medicago truncatula] gi|3 | 0.949 | 0.807 | 0.788 | 1e-156 | |
| 3769330 | 420 | alpha-amylase [Phaseolus vulgaris] | 0.938 | 0.8 | 0.780 | 1e-156 |
| >gi|224137490|ref|XP_002327139.1| predicted protein [Populus trichocarpa] gi|222835454|gb|EEE73889.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 278/337 (82%), Positives = 306/337 (90%), Gaps = 1/337 (0%)
Query: 6 SFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP 65
+FCF S L++F TS LLFQGFNWES NKAGGWYNSLKNS+PDL+NAGITHVWLPP
Sbjct: 5 TFCFFSLFLSVFPLLTSSYLLFQGFNWESCNKAGGWYNSLKNSVPDLANAGITHVWLPPS 64
Query: 66 SQSVAPQG-YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR 124
SQSVAPQG YMPGRLYDL AS+YGSQ +LKSLI F QKGIKCLAD+VINHRTAE++D R
Sbjct: 65 SQSVAPQGRYMPGRLYDLSASRYGSQDELKSLIGDFNQKGIKCLADIVINHRTAEKQDER 124
Query: 125 GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELS 184
GI+ +FEGGTSDDRLDWGPSFIC D YSDG+GN D+G+DF+PAPDIDHLNPRVQ+ELS
Sbjct: 125 GIWSVFEGGTSDDRLDWGPSFICGDDTAYSDGKGNPDSGDDFEPAPDIDHLNPRVQRELS 184
Query: 185 DWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQ 244
DWMNWLK+EIGFDGWRFDFVKGYAPS+TK+YMENTSPDFAVGEKWDSL+YG DGK D NQ
Sbjct: 185 DWMNWLKSEIGFDGWRFDFVKGYAPSVTKIYMENTSPDFAVGEKWDSLAYGQDGKLDYNQ 244
Query: 245 DGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVT 304
D HRG++KDW+QAAGGAV AFDFT+KGILQAAVQGELWRLKDSNGKPPG IG+LPQNAVT
Sbjct: 245 DAHRGSIKDWIQAAGGAVTAFDFTSKGILQAAVQGELWRLKDSNGKPPGLIGLLPQNAVT 304
Query: 305 FIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
FIDNHDTGSTQ++WPFPSDKVM GYAYILTHPGTP I
Sbjct: 305 FIDNHDTGSTQQIWPFPSDKVMQGYAYILTHPGTPSI 341
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538306|ref|XP_002510218.1| alpha-amylase, putative [Ricinus communis] gi|223550919|gb|EEF52405.1| alpha-amylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/337 (81%), Positives = 301/337 (89%), Gaps = 2/337 (0%)
Query: 7 FCFLS--FLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP 64
FLS +LL+IF +TS A+LFQGFNWES NK GGWYNSLKN +PD+++AGITHVWLPP
Sbjct: 1 MTFLSWFYLLSIFPLYTSAAVLFQGFNWESCNKEGGWYNSLKNFVPDIASAGITHVWLPP 60
Query: 65 PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR 124
SQSVAPQGYMPGRLYDL SKYG+Q +LKSLIQA QKGIKCLAD+VINHRTAE++D R
Sbjct: 61 SSQSVAPQGYMPGRLYDLSVSKYGNQDELKSLIQALHQKGIKCLADIVINHRTAEKQDER 120
Query: 125 GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELS 184
GI+CIFEGGT+DDRLDWGPSFICR D YSDG+GN DTG DF+PAPDIDHLNPRVQ+ELS
Sbjct: 121 GIWCIFEGGTADDRLDWGPSFICRDDTAYSDGKGNPDTGGDFEPAPDIDHLNPRVQQELS 180
Query: 185 DWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQ 244
DWMNWLK+EIGFDGWRFD+VKGYAPSITK+YM T+PDFAVGEKWDSLSYG D KPD NQ
Sbjct: 181 DWMNWLKSEIGFDGWRFDYVKGYAPSITKIYMGKTTPDFAVGEKWDSLSYGQDRKPDYNQ 240
Query: 245 DGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVT 304
DGHR ALKDW+QAAGG + AFDFTTKGILQAAVQGELWRLKDSNG PPG IG +PQNAVT
Sbjct: 241 DGHRNALKDWIQAAGGVITAFDFTTKGILQAAVQGELWRLKDSNGNPPGLIGTMPQNAVT 300
Query: 305 FIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
FIDNHDTGSTQ+LWPFPSDKVM GYAYILTHPG P I
Sbjct: 301 FIDNHDTGSTQQLWPFPSDKVMQGYAYILTHPGIPSI 337
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063525|ref|XP_002301187.1| predicted protein [Populus trichocarpa] gi|222842913|gb|EEE80460.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/318 (86%), Positives = 292/318 (91%)
Query: 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD 83
+++QGFNWES N+AGGWYNSLKN +PDL+NAGITHVWLPP SQSVAPQGYMPGRLYDL
Sbjct: 4 VIVWQGFNWESCNQAGGWYNSLKNLVPDLANAGITHVWLPPASQSVAPQGYMPGRLYDLS 63
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 143
ASKYGSQ +LKSLI AF QKGIKCLAD+VINHRTAE++DGRGI+CIFEGGTSDDRLDWGP
Sbjct: 64 ASKYGSQGELKSLIGAFHQKGIKCLADIVINHRTAEKQDGRGIWCIFEGGTSDDRLDWGP 123
Query: 144 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203
S IC D YSDG+GN DTG DF APDIDHLNPRVQKELSDWMNWLK+EIGFDGWRFDF
Sbjct: 124 SLICSDDTAYSDGKGNPDTGGDFGGAPDIDHLNPRVQKELSDWMNWLKSEIGFDGWRFDF 183
Query: 204 VKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVA 263
VKGYAPSITK+YMENTSPDFAVGEKWDSL+YG DGKPD NQD HRG LKDW+QAAGGAV
Sbjct: 184 VKGYAPSITKIYMENTSPDFAVGEKWDSLAYGQDGKPDYNQDAHRGGLKDWIQAAGGAVT 243
Query: 264 AFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD 323
AFDFTTKGILQ AVQGELWRLKDSNGKPPG IG+LPQNAVTFIDNHDTGSTQ+LWPFPSD
Sbjct: 244 AFDFTTKGILQDAVQGELWRLKDSNGKPPGLIGLLPQNAVTFIDNHDTGSTQKLWPFPSD 303
Query: 324 KVMLGYAYILTHPGTPCI 341
KVM GYAYILTHPGTP I
Sbjct: 304 KVMQGYAYILTHPGTPSI 321
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|113781|sp|P17859.1|AMYA_VIGMU RecName: Full=Alpha-amylase; AltName: Full=1,4-alpha-D-glucan glucanohydrolase; Flags: Precursor gi|22060|emb|CAA37217.1| unnamed protein product [Vigna mungo] gi|437945|emb|CAA51734.1| alpha-amylase [Vigna mungo] gi|745990|prf||2016476A alpha amylase | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/341 (80%), Positives = 301/341 (88%), Gaps = 4/341 (1%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC LL +F +SPALLFQGFNWESS K GGWYNSLKNSIPDL+NAGITHV
Sbjct: 4 FSRLSIFCLFISLLPLF---SSPALLFQGFNWESSKK-GGWYNSLKNSIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDASKYGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASKYGSKNELKSLIAAFHEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D R DWGPSFICR D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDSRQDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTEIGFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWDS+SYG DGKP
Sbjct: 180 RELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTKPDFAVGEKWDSISYGQDGKP 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKPPG IG+ P+
Sbjct: 240 NYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP I
Sbjct: 300 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSI 340
|
Source: Vigna mungo Species: Vigna mungo Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|228404|prf||1803517A alpha amylase | Back alignment and taxonomy information |
|---|
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/341 (80%), Positives = 302/341 (88%), Gaps = 4/341 (1%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC LL +F +SPALLFQGFNWESS K GGWYNSLKNSIPDL+NAGITHV
Sbjct: 4 FSRLSIFCLFISLLPLF---SSPALLFQGFNWESSKK-GGWYNSLKNSIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDAS+YGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASRYGSKNELKSLIAAFHEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D RLDWGPSFICR D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDSRLDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTEIGFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWD++SYG DGKP
Sbjct: 180 RELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTRPDFAVGEKWDAISYGQDGKP 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKPPG IG+ P+
Sbjct: 240 NYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP I
Sbjct: 300 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSI 340
|
Source: Vigna radiata Species: Vigna radiata Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30962522|dbj|BAC76729.1| alpha-amylase [Vigna angularis] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/341 (80%), Positives = 301/341 (88%), Gaps = 4/341 (1%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC LL +F +SPALLFQGFNWESS K GGWYNSLKNSIPDL+NAGITHV
Sbjct: 4 FSRLSIFCLFISLLPLF---SSPALLFQGFNWESSKK-GGWYNSLKNSIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDAS+YGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASRYGSKNELKSLIAAFYEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D RLDWGPSFICR D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDSRLDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTEIGFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWDSLS G DGKP
Sbjct: 180 RELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTRPDFAVGEKWDSLSSGQDGKP 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKPPG IG+ P+
Sbjct: 240 NYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPPGMIGVKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP I
Sbjct: 300 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSI 340
|
Source: Vigna angularis Species: Vigna angularis Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/333 (80%), Positives = 290/333 (87%)
Query: 9 FLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS 68
F FLL+IF TS ALLFQGFNWES NK GGWYN LKNSI D++NAGITHVWLPPPSQS
Sbjct: 11 FWLFLLSIFPLSTSSALLFQGFNWESCNKGGGWYNLLKNSILDIANAGITHVWLPPPSQS 70
Query: 69 VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYC 128
V+PQGYMPGRLYDL+AS+YG+Q +LKSLI+AF KGIKCLAD+VINHRTAE+KD RGI+C
Sbjct: 71 VSPQGYMPGRLYDLNASRYGTQDELKSLIRAFHHKGIKCLADIVINHRTAEKKDERGIWC 130
Query: 129 IFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188
IFEGGT DDRLDWGPSFIC D +SDG GN DTGED+ PAPDIDHLNPRVQKELSDWMN
Sbjct: 131 IFEGGTDDDRLDWGPSFICCDDTVFSDGTGNPDTGEDYPPAPDIDHLNPRVQKELSDWMN 190
Query: 189 WLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHR 248
WLK EIGF GWRFDF KGY+P+I K+YME P FAVGEKWDSLSYG D KPD NQD HR
Sbjct: 191 WLKLEIGFGGWRFDFAKGYSPTIMKIYMEQIPPGFAVGEKWDSLSYGQDWKPDYNQDAHR 250
Query: 249 GALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDN 308
ALKDW+QA+GG + AFDFTTKGILQAAVQGELWRL DSNG PPG IGI+PQNAVTFIDN
Sbjct: 251 NALKDWIQASGGVITAFDFTTKGILQAAVQGELWRLIDSNGNPPGLIGIMPQNAVTFIDN 310
Query: 309 HDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
HDTGSTQ+LWPFPSDKVM GYAYILTHPG P I
Sbjct: 311 HDTGSTQQLWPFPSDKVMQGYAYILTHPGIPTI 343
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388508160|gb|AFK42146.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust.
Identities = 269/341 (78%), Positives = 291/341 (85%), Gaps = 1/341 (0%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
M++L F L+IF S LLFQGFNWESSNK GGWYNSLKN IPDL+NAGITHV
Sbjct: 1 MNSLPWLSLFCFCLSIFPLLASSTLLFQGFNWESSNK-GGWYNSLKNLIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV PQGY+PGRLYDLDASKYGS+ DLKSLI AF+ KGI CLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVGPQGYLPGRLYDLDASKYGSKDDLKSLIAAFKDKGINCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KD RGIYC+FEGGT D +LDWGPSFIC+ D YSDG GN D+GE +Q APDIDHLNP+VQ
Sbjct: 120 KDDRGIYCLFEGGTPDSKLDWGPSFICKDDTAYSDGTGNLDSGEGYQAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
KELS+WMNWLKTEIGF GWRFDFVKGYAPSITK+YMENTSPDFAVGE W+SLSYG DGK
Sbjct: 180 KELSEWMNWLKTEIGFSGWRFDFVKGYAPSITKIYMENTSPDFAVGEYWNSLSYGQDGKL 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD RG L +WV+ GG V AFDFTTKGILQAAVQGELWRLKDSNGKPPG IGI P+
Sbjct: 240 NYNQDAARGELVNWVENGGGVVNAFDFTTKGILQAAVQGELWRLKDSNGKPPGLIGIKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
N TFIDNHDTGSTQ+LWPFPSDKVM GYAYILTHPGTP I
Sbjct: 300 NGATFIDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGTPSI 340
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357437821|ref|XP_003589186.1| Alpha-amylase [Medicago truncatula] gi|355478234|gb|AES59437.1| Alpha-amylase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/341 (78%), Positives = 291/341 (85%), Gaps = 1/341 (0%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
M++L F L+IF S LLFQGFNWESSNK GGWYNSLKN IPDL+NAGITHV
Sbjct: 1 MNSLPWLSLFCFCLSIFPLLASSTLLFQGFNWESSNK-GGWYNSLKNLIPDLANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV PQGY+PGRLYDLDASKYGS+ DLKSLI AF+ KGI CLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVGPQGYLPGRLYDLDASKYGSKDDLKSLIAAFKDKGINCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KD RGIYC+FEGGT D +LDWGPSFIC+ D YSDG GN D+GE +Q APDIDHLNP+VQ
Sbjct: 120 KDDRGIYCLFEGGTPDSKLDWGPSFICKDDTAYSDGTGNLDSGEGYQAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
KELS+WMNWLKTEIGF GWRFDFVKGYAPSITK+YMENTSPDFAVGE W+SLSYG DGK
Sbjct: 180 KELSEWMNWLKTEIGFSGWRFDFVKGYAPSITKIYMENTSPDFAVGEYWNSLSYGQDGKL 239
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
+ NQD RG L +WV+ GG V AFDFTTKGILQAAVQGELWRLKDSNGKPPG IGI P+
Sbjct: 240 NYNQDAARGELVNWVENGGGVVNAFDFTTKGILQAAVQGELWRLKDSNGKPPGLIGIKPE 299
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
N TFIDNHDTGSTQ+LWPFPSDKVM GYAYILTHPGTP I
Sbjct: 300 NGATFIDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGTPSI 340
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3769330|dbj|BAA33879.1| alpha-amylase [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 266/341 (78%), Positives = 296/341 (86%), Gaps = 5/341 (1%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
S L FC L +F +S ALLFQGFNWESS K GGWYNSLKNS+PD++NAGITHV
Sbjct: 4 FSRLSIFCLFISLSPLF---SSSALLFQGFNWESSKK-GGWYNSLKNSVPDIANAGITHV 59
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPSQSV+P+GY+PGRLYDLDAS+YGS+ +LKSLI AF +KGIKCLAD+VINHRTAER
Sbjct: 60 WLPPPSQSVSPEGYLPGRLYDLDASRYGSKDELKSLIAAFHEKGIKCLADIVINHRTAER 119
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KDGRGIYCIFEGGT D RLDWGPSFIC+ D YSDG GN+D+GE + APDIDHLNP+VQ
Sbjct: 120 KDGRGIYCIFEGGTPDARLDWGPSFICKDDTTYSDGTGNNDSGESYDAAPDIDHLNPQVQ 179
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
+ELS+WMNWLKTE+GFDGWRFDFVKGYAPSI+K+YME T PDFAVGEKWD LSY +GKP
Sbjct: 180 RELSEWMNWLKTEVGFDGWRFDFVKGYAPSISKIYMEQTRPDFAVGEKWDPLSY-ENGKP 238
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
NQD HRGAL +WV++AGGA+ AFDFTTKGILQAAVQGELWRL D NGKP G IG+ P+
Sbjct: 239 TYNQDSHRGALVNWVESAGGAITAFDFTTKGILQAAVQGELWRLIDPNGKPSGMIGVKPE 298
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP I
Sbjct: 299 NAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSI 339
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 358 | ||||||
| TAIR|locus:2117398 | 423 | AMY1 "alpha-amylase-like" [Ara | 0.941 | 0.796 | 0.720 | 3.2e-136 | |
| UNIPROTKB|P27933 | 436 | AMY1.3 "Alpha-amylase isozyme | 0.952 | 0.782 | 0.667 | 4.4e-132 | |
| UNIPROTKB|P27939 | 437 | AMY1.7 "Alpha-amylase isozyme | 0.946 | 0.775 | 0.665 | 1.1e-128 | |
| UNIPROTKB|P27937 | 438 | AMY1.6 "Alpha-amylase isozyme | 0.949 | 0.776 | 0.653 | 1.7e-128 | |
| UNIPROTKB|P27934 | 437 | AMY1.4 "Alpha-amylase isozyme | 0.932 | 0.764 | 0.646 | 5.9e-128 | |
| UNIPROTKB|P27932 | 440 | AMY1.2 "Alpha-amylase isozyme | 0.952 | 0.775 | 0.640 | 7.6e-128 | |
| UNIPROTKB|P17654 | 434 | AMY1.1 "Alpha-amylase" [Oryza | 0.935 | 0.771 | 0.643 | 3.1e-122 | |
| TAIR|locus:2196759 | 887 | AMY3 "alpha-amylase-like 3" [A | 0.888 | 0.358 | 0.493 | 1.8e-85 | |
| TAIR|locus:2199808 | 413 | AMY2 "alpha-amylase-like 2" [A | 0.846 | 0.733 | 0.473 | 4.2e-79 | |
| UNIPROTKB|Q2KES2 | 626 | MGCH7_ch7g964 "Putative unchar | 0.270 | 0.154 | 0.366 | 4.4e-16 |
| TAIR|locus:2117398 AMY1 "alpha-amylase-like" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
Identities = 248/344 (72%), Positives = 283/344 (82%)
Query: 1 MSTLKSFCFLSFLLAIFLP-FT-SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGIT 58
M++L + F S L I P FT S LLFQ FNWES K GG+YNSL NSI D++NAGIT
Sbjct: 1 MTSLHTLLFSSLLFFIVFPTFTFSSTLLFQSFNWESWKKEGGFYNSLHNSIDDIANAGIT 60
Query: 59 HVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118
H+WLPPPSQSVAP+GY+PG+LYDL++SKYGS+A+LKSLI+A QKGIK LAD+VINHRTA
Sbjct: 61 HLWLPPPSQSVAPEGYLPGKLYDLNSSKYGSEAELKSLIKALNQKGIKALADIVINHRTA 120
Query: 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178
ERKD + YC FEGGTSDDRLDW PSF+CR D ++ G GN DTG DF APDIDHLNPR
Sbjct: 121 ERKDDKCGYCYFEGGTSDDRLDWDPSFVCRNDPKFP-GTGNLDTGGDFDGAPDIDHLNPR 179
Query: 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDG 238
VQKELS+WMNWLKTEIGF GWRFD+V+GYA SITK+Y++NTSPDFAVGEKWD + YG DG
Sbjct: 180 VQKELSEWMNWLKTEIGFHGWRFDYVRGYASSITKLYVQNTSPDFAVGEKWDDMKYGGDG 239
Query: 239 KPDANQDGHRGALKDWVQAAGGAV-AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGI 297
K D +Q+ HR LK W++ AGG V AFDFTTKGILQ+AV+GELWRLKDS GKPPG IGI
Sbjct: 240 KLDYDQNEHRSGLKQWIEEAGGGVLTAFDFTTKGILQSAVKGELWRLKDSQGKPPGMIGI 299
Query: 298 LPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
+P NAVTFIDNHDT T W FPSDKV+LGY YILTHPGTPCI
Sbjct: 300 MPGNAVTFIDNHDTFRT---WVFPSDKVLLGYVYILTHPGTPCI 340
|
|
| UNIPROTKB|P27933 AMY1.3 "Alpha-amylase isozyme 3D" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 229/343 (66%), Positives = 265/343 (77%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTS--PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGIT 58
M S C L ++ L S +LFQGFNWES + GGWYN LK + D++ AG+T
Sbjct: 1 MKNTSSLCLLLLVVLCSLTCNSGQAQVLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVT 60
Query: 59 HVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118
HVWLPPPS SVAPQGYMPGRLYDLDASKYG+ A+LKSLI AF KG++C+AD+VINHR A
Sbjct: 61 HVWLPPPSHSVAPQGYMPGRLYDLDASKYGTAAELKSLIAAFHGKGVQCVADVVINHRCA 120
Query: 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178
E+KD RG+YC+FEGGT DDRLDWGP IC D +YSDG G+ DTGE F APDIDHLNPR
Sbjct: 121 EKKDARGVYCVFEGGTPDDRLDWGPGMICSDDTQYSDGTGHRDTGEGFGAAPDIDHLNPR 180
Query: 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDG 238
VQ+EL+DW+NWLK+++GFDGWR DF KGY+ I K+Y+E+ P F V E W+SLSY DG
Sbjct: 181 VQRELTDWLNWLKSDVGFDGWRLDFAKGYSTDIAKMYVESCKPGFVVAEIWNSLSYNGDG 240
Query: 239 KPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL 298
KP ANQD R L +WV A GG FDFTTKG+LQA VQGELWRL+D NGK G IG L
Sbjct: 241 KPAANQDQGRQELVNWVNAVGGPAMTFDFTTKGLLQAGVQGELWRLRDGNGKAAGMIGWL 300
Query: 299 PQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
P+ AVTF+DNHDTGSTQ+LWPFPSDKVM GYAYILTHPG PCI
Sbjct: 301 PEKAVTFVDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGVPCI 343
|
|
| UNIPROTKB|P27939 AMY1.7 "Alpha-amylase isozyme 3C" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
Identities = 227/341 (66%), Positives = 261/341 (76%)
Query: 2 STLKSFCFLSF-LLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
ST S C L F LL + +LFQGFNWES K GGWYN L + + D++ G+THV
Sbjct: 5 STTMS-CLLFFVLLCLGSHLAQAQVLFQGFNWESWKKQGGWYNFLHSHVDDIAATGVTHV 63
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPS SVAPQGYMPGRLYDLDASKYG+ A+L+SLI AF K IKC+AD+VINHR A+
Sbjct: 64 WLPPPSHSVAPQGYMPGRLYDLDASKYGTGAELRSLIAAFHSKSIKCVADIVINHRCADY 123
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KD RGIYCIFEGGT D RLDWGP IC D +YS+G+G+ DTG DF APDIDHLN RVQ
Sbjct: 124 KDSRGIYCIFEGGTPDSRLDWGPDMICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQ 183
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
ELSDW+NWLK+++GFDGWR DF KGY+ ++ K Y++NT P F V E W ++ Y +G+P
Sbjct: 184 TELSDWLNWLKSDVGFDGWRLDFAKGYSATVAKTYVDNTDPSFVVAEIWSNMRYDGNGEP 243
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
NQDG R L +W QA GG +AFDFTTKG LQAAVQGELWR+KD NGK PG IG LP+
Sbjct: 244 SWNQDGDRQELVNWAQAVGGPASAFDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPE 303
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
AVTFIDNHDTGSTQ WPFPSDKVM GYAYILTHPG PCI
Sbjct: 304 KAVTFIDNHDTGSTQNSWPFPSDKVMQGYAYILTHPGVPCI 344
|
|
| UNIPROTKB|P27937 AMY1.6 "Alpha-amylase isozyme 3B" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 223/341 (65%), Positives = 262/341 (76%)
Query: 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHV 60
++++ S ++ LL + +LFQGFNWES K GGWYN L + D++ G+THV
Sbjct: 5 IASMSSLLLIA-LLCLSSHLAQAQVLFQGFNWESWKKQGGWYNFLHGHVDDIAATGVTHV 63
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120
WLPPPS SVAPQGYMPGRLYDLDASKYG+ A+L+SLI AF KGIKC+AD+VINHR A+
Sbjct: 64 WLPPPSHSVAPQGYMPGRLYDLDASKYGTGAELRSLIAAFHSKGIKCVADIVINHRCADY 123
Query: 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180
KD RGIYCIFEGGT D RLDWGP IC D +YS+G+G+ DTG DF APDIDHLN RVQ
Sbjct: 124 KDSRGIYCIFEGGTPDSRLDWGPDMICSDDTQYSNGRGHRDTGADFGAAPDIDHLNTRVQ 183
Query: 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
ELSDW+NWLK+++GFDGWR DF KGY+ ++ K Y++NT P F V E W ++ Y +G+P
Sbjct: 184 TELSDWLNWLKSDVGFDGWRLDFAKGYSAAVAKTYVDNTDPSFVVAEIWSNMRYDGNGEP 243
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
NQDG R L +W QA GG +AFDFTTKG LQAAVQGELWR+KD NGK PG IG LP+
Sbjct: 244 SWNQDGDRQELVNWAQAVGGPASAFDFTTKGELQAAVQGELWRMKDGNGKAPGMIGWLPE 303
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
AVTFIDNHDTGSTQ WPFPSDKVM GYAYILTHPG PCI
Sbjct: 304 KAVTFIDNHDTGSTQNSWPFPSDKVMQGYAYILTHPGVPCI 344
|
|
| UNIPROTKB|P27934 AMY1.4 "Alpha-amylase isozyme 3E" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 216/334 (64%), Positives = 258/334 (77%)
Query: 8 CFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67
C + +L + +LFQGFNWES K GGWYN L + ++++ G THVWLPPPS
Sbjct: 10 CVVFAVLCLASSLAQAQVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSH 69
Query: 68 SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIY 127
SV+PQGYMPGRLYDLDASKYG++A+LKSLI+AF K ++CLAD+VINHR A+ KD RG+Y
Sbjct: 70 SVSPQGYMPGRLYDLDASKYGTEAELKSLIEAFHDKNVECLADIVINHRCADYKDSRGVY 129
Query: 128 CIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWM 187
C+FEGGT D RLDWGP IC D +YS+G+G+ DTG F APDIDHLNPRVQ+EL+DW+
Sbjct: 130 CVFEGGTPDGRLDWGPDMICSDDTQYSNGRGHRDTGAGFGAAPDIDHLNPRVQRELTDWL 189
Query: 188 NWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGH 247
NWL+T++GFDGWR DF KGY+ + ++Y++NT+P F VGE W SL Y DGKP NQD
Sbjct: 190 NWLRTDLGFDGWRLDFAKGYSAPLARIYVDNTNPTFVVGEIWSSLIYNGDGKPSTNQDAD 249
Query: 248 RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFID 307
R L +WV+ G AFDFTTKGILQAAVQGELWRL D NGK PG +G +P AVTF+D
Sbjct: 250 RQELVNWVEGVGKPATAFDFTTKGILQAAVQGELWRLHDGNGKAPGLMGWMPDQAVTFVD 309
Query: 308 NHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
NHDTGSTQ LWPFPSDKVM GYAYILTHPG PCI
Sbjct: 310 NHDTGSTQSLWPFPSDKVMQGYAYILTHPGIPCI 343
|
|
| UNIPROTKB|P27932 AMY1.2 "Alpha-amylase isozyme 3A" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
Identities = 219/342 (64%), Positives = 267/342 (78%)
Query: 1 MSTLKSFCFLSFL-LAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITH 59
M+ L F ++ L L + +LFQGFNW+S K GGWYN LK+ + D+++AG+TH
Sbjct: 5 MAALCGFLLVALLWLTPDVAHAQTQILFQGFNWDSWKKQGGWYNMLKDQVGDIASAGVTH 64
Query: 60 VWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119
VWLPPP+ SV+PQGYMPGRLYDL+ASKYG++A+LKSLI AF KGIKC+AD+V+NHR A+
Sbjct: 65 VWLPPPTHSVSPQGYMPGRLYDLNASKYGTKAELKSLIAAFHAKGIKCVADIVVNHRCAD 124
Query: 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179
KDGRG+YCIF+GG LDWGPS IC D +YSDG G+ DTG DF APDIDHLNP V
Sbjct: 125 DKDGRGVYCIFKGGGPRGCLDWGPSMICCDDTQYSDGTGHRDTGADFAAAPDIDHLNPLV 184
Query: 180 QKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGK 239
Q+ELSDW+ WL+ ++GFDGWR DF KGY+ ++ + Y++N P F V E W+SLSY DGK
Sbjct: 185 QRELSDWLRWLRRDVGFDGWRLDFAKGYSAAVARTYVQNARPSFVVAEIWNSLSYDGDGK 244
Query: 240 PDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP 299
P ANQDG R L +WV+ GG AFDFTTKGILQ+AVQGELWR++D +GK PG IG P
Sbjct: 245 PAANQDGQRQELVNWVKQVGGPATAFDFTTKGILQSAVQGELWRMRDKDGKAPGMIGWYP 304
Query: 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
+ AVTF+DNHDTGSTQR+WPFPSDKV+LGYAYILTHPG PCI
Sbjct: 305 EKAVTFVDNHDTGSTQRMWPFPSDKVILGYAYILTHPGVPCI 346
|
|
| UNIPROTKB|P17654 AMY1.1 "Alpha-amylase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
Identities = 218/339 (64%), Positives = 252/339 (74%)
Query: 6 SFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP 65
S L LL + T+ +LFQGFNWES + GGWYN L + D++ AGITHVWLPPP
Sbjct: 14 SLSVLIVLLGLSSNLTAGQVLFQGFNWESWKENGGWYNFLMGKVDDIAAAGITHVWLPPP 73
Query: 66 SQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125
S SV QGYMPGRLYDLDASKYG++A LKSLI+AF KG++ +AD+VINHRTAE KDGRG
Sbjct: 74 SHSVGEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRG 133
Query: 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD 185
IYC+FEGGT D RLDWGP ICR D Y DG GN DTG DF APDIDHLN RVQ+EL
Sbjct: 134 IYCLFEGGTPDSRLDWGPHMICRDDP-YGDGTGNPDTGADFAAAPDIDHLNKRVQRELIG 192
Query: 186 WMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQD 245
W++WLK +IGFD WR DF KGY+ + K+Y++ T P FAV E W S++ G DGKP+ +Q+
Sbjct: 193 WLDWLKMDIGFDAWRLDFAKGYSADMAKIYIDATEPSFAVAEIWTSMANGGDGKPNYDQN 252
Query: 246 GHRGALKDWVQAAGGA---VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA 302
HR L +WV GGA AFDFTTKGIL AV+GELWRL+ +GK PG IG P A
Sbjct: 253 AHRQELVNWVDRVGGANSNATAFDFTTKGILNVAVEGELWRLRGEDGKAPGMIGWWPAKA 312
Query: 303 VTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
TF+DNHDTGSTQ LWPFPSDKVM GYAYILTHPG PCI
Sbjct: 313 TTFVDNHDTGSTQHLWPFPSDKVMQGYAYILTHPGNPCI 351
|
|
| TAIR|locus:2196759 AMY3 "alpha-amylase-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 162/328 (49%), Positives = 215/328 (65%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+L QGFNWES NK+G WY L+ +L++ G T +WLPPP++SV+P+GYMP LY+L+
Sbjct: 497 ILCQGFNWES-NKSGRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYNLN- 554
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
S+YG+ +LK ++ F + GIK L D V+NHR A K+ G++ +F GG RL+W
Sbjct: 555 SRYGTIDELKDTVKKFHKVGIKVLGDAVLNHRCAHFKNQNGVWNLF-GG----RLNWDDR 609
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
+ D + G+GN +G++F AP+IDH V+K++ +W+ W+ E+G+DGWR DFV
Sbjct: 610 AVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWMMEEVGYDGWRLDFV 668
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+G+ K YM+ + P FAVGE WDSLSY G+ D NQD HR + DW+ A GA A
Sbjct: 669 RGFWGGYVKDYMDASKPYFAVGEYWDSLSY-TYGEMDYNQDAHRQRIVDWINATSGAAGA 727
Query: 265 FDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD 323
FD TTKGIL A+Q E WRL D GKPPG +G P AVTFI+NHDTGSTQ W FP
Sbjct: 728 FDVTTKGILHTALQKCEYWRLSDPKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEG 787
Query: 324 KVMLGYAYILTHPGTPCIVISVTYPLFH 351
K M GYAYILTHPGTP + + +H
Sbjct: 788 KEMQGYAYILTHPGTPAVFFDHIFSDYH 815
|
|
| TAIR|locus:2199808 AMY2 "alpha-amylase-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 151/319 (47%), Positives = 203/319 (63%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
++ Q +NWES W+ +L +PD++ +G T WLPPPSQS+AP+GY+P LY L+
Sbjct: 27 VILQAYNWESHKY--DWWRNLDGKVPDIAKSGFTSAWLPPPSQSLAPEGYLPQDLYSLN- 83
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
S YGS+ LKSL++ +Q ++ +AD+VINHR + G+Y ++G + L W
Sbjct: 84 SAYGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTRGHGGMYNRYDGIS----LPWDEH 139
Query: 145 FI--CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
+ C G G GN TG++F P++DH V+K++ W+ WL+ +GF +RFD
Sbjct: 140 AVTSCTG------GLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRWLRNTVGFQDFRFD 193
Query: 203 FVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAV 262
F +GY+ + K Y+ P F+VGE WDS +Y G D NQD HR + W+ A G
Sbjct: 194 FARGYSANYVKEYIGAAKPLFSVGECWDSCNYNGHGL-DYNQDSHRQRIISWIDATGQIS 252
Query: 263 AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322
AAFDFTTKGILQ AV+G+ WRL D+ GKPPG +G P AVTF+DNHDTGSTQ WPFPS
Sbjct: 253 AAFDFTTKGILQEAVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS 312
Query: 323 DKVMLGYAYILTHPGTPCI 341
VM GYAYILTHPG PC+
Sbjct: 313 HHVMEGYAYILTHPGIPCV 331
|
|
| UNIPROTKB|Q2KES2 MGCH7_ch7g964 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 148 (57.2 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 40/109 (36%), Positives = 52/109 (47%)
Query: 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYM 75
P T LFQGF W W L N IP L+ GIT +W+PP + GY
Sbjct: 30 PSTRNETLFQGFEWHLPADKRHW-RRLINLIPSLAPLGITKLWIPPACKGGGGAWSNGYD 88
Query: 76 PGRLYDLD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116
LYDL A+K+G + DL L++A GI+ L D V+NH+
Sbjct: 89 VYDLYDLGQFDQKGSRATKWGPRTDLDELVRAAGDAGIEILFDAVLNHK 137
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P27933 | AMY3D_ORYSJ | 3, ., 2, ., 1, ., 1 | 0.7034 | 0.8854 | 0.7270 | yes | no |
| Q8VZ56 | AMY1_ARATH | 3, ., 2, ., 1, ., 1 | 0.7209 | 0.9413 | 0.7966 | yes | no |
| P04747 | AMY3_HORVU | 3, ., 2, ., 1, ., 1 | 0.6790 | 0.8994 | 0.875 | N/A | no |
| P17859 | AMYA_VIGMU | 3, ., 2, ., 1, ., 1 | 0.8064 | 0.9413 | 0.8004 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 358 | |||
| PLN00196 | 428 | PLN00196, PLN00196, alpha-amylase; Provisional | 0.0 | |
| cd11314 | 302 | cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase | 1e-149 | |
| PLN02361 | 401 | PLN02361, PLN02361, alpha-amylase | 1e-122 | |
| PLN02784 | 894 | PLN02784, PLN02784, alpha-amylase | 1e-120 | |
| PRK09441 | 479 | PRK09441, PRK09441, cytoplasmic alpha-amylase; Rev | 3e-50 | |
| cd11318 | 391 | cd11318, AmyAc_bac_fung_AmyA, Alpha amylase cataly | 3e-40 | |
| smart00642 | 166 | smart00642, Aamy, Alpha-amylase domain | 7e-22 | |
| pfam00128 | 314 | pfam00128, Alpha-amylase, Alpha amylase, catalytic | 8e-22 | |
| COG0366 | 505 | COG0366, AmyA, Glycosidases [Carbohydrate transpor | 1e-17 | |
| cd11320 | 389 | cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase | 2e-14 | |
| cd11315 | 352 | cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic | 2e-13 | |
| cd11340 | 407 | cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catal | 4e-13 | |
| cd00551 | 260 | cd00551, AmyAc_family, Alpha amylase catalytic dom | 5e-13 | |
| cd11339 | 344 | cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catal | 4e-12 | |
| cd11317 | 329 | cd11317, AmyAc_bac_euk_AmyA, Alpha amylase catalyt | 1e-10 | |
| cd11316 | 403 | cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic | 3e-10 | |
| cd11338 | 389 | cd11338, AmyAc_CMD, Alpha amylase catalytic domain | 1e-09 | |
| cd11319 | 375 | cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic d | 3e-09 | |
| cd11354 | 357 | cd11354, AmyAc_bac_CMD_like, Alpha amylase catalyt | 7e-09 | |
| cd11350 | 390 | cd11350, AmyAc_4, Alpha amylase catalytic domain f | 1e-08 | |
| cd11334 | 447 | cd11334, AmyAc_TreS, Alpha amylase catalytic domai | 4e-07 | |
| cd11328 | 470 | cd11328, AmyAc_maltase, Alpha amylase catalytic do | 5e-07 | |
| cd11359 | 456 | cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom | 1e-05 | |
| TIGR02403 | 543 | TIGR02403, trehalose_treC, alpha,alpha-phosphotreh | 2e-05 | |
| TIGR02456 | 539 | TIGR02456, treS_nterm, trehalose synthase | 2e-05 | |
| COG1523 | 697 | COG1523, PulA, Type II secretory pathway, pullulan | 1e-04 | |
| cd11313 | 336 | cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly | 3e-04 | |
| cd11329 | 477 | cd11329, AmyAc_maltase-like, Alpha amylase catalyt | 6e-04 | |
| PRK10933 | 551 | PRK10933, PRK10933, trehalose-6-phosphate hydrolas | 6e-04 | |
| cd11326 | 433 | cd11326, AmyAc_Glg_debranch, Alpha amylase catalyt | 7e-04 | |
| PRK14510 | 1221 | PRK14510, PRK14510, putative bifunctional 4-alpha- | 9e-04 | |
| cd11333 | 428 | cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca | 0.001 | |
| cd11337 | 328 | cd11337, AmyAc_CMD_like, Alpha amylase catalytic d | 0.001 |
| >gnl|CDD|165762 PLN00196, PLN00196, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 520 bits (1341), Expect = 0.0
Identities = 218/342 (63%), Positives = 258/342 (75%), Gaps = 5/342 (1%)
Query: 5 KSFCFLSFLLAIFLPFTSPA--LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWL 62
+ + L+ + L A +LFQGFNWES + GGWYN L + D++ AGITHVWL
Sbjct: 4 RRLSMILLLVLLGLSSNLAAGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWL 63
Query: 63 PPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD 122
PPPS SV+ QGYMPGRLYDLDASKYG++A LKSLI+AF KG++ +AD+VINHRTAE KD
Sbjct: 64 PPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKD 123
Query: 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE 182
GRGIYC+FEGGT D RLDWGP ICR D +YSDG GN DTG DF APDIDHLN RVQ+E
Sbjct: 124 GRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRE 183
Query: 183 LSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDA 242
L W+ WLK++IGFD WR DF KGY+ + KVY++ T P FAV E W S++YG DGKP+
Sbjct: 184 LIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEY 243
Query: 243 NQDGHRGALKDWVQAAGGAVA---AFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP 299
+Q+ HR L +WV GGA + FDFTTKGIL AV+GELWRL+ ++GK PG IG P
Sbjct: 244 DQNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWP 303
Query: 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
AVTF+DNHDTGSTQ +WPFPSDKVM GYAYILTHPG PCI
Sbjct: 304 AKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGNPCI 345
|
Length = 428 |
| >gnl|CDD|200453 cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 422 bits (1086), Expect = e-149
Identities = 174/319 (54%), Positives = 203/319 (63%), Gaps = 53/319 (16%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLD 83
+ QGF W+S G W+N L++ P+L+ AG T +WLPPPS+SV + GY PG LYDL+
Sbjct: 2 MLQGFYWDSPKD-GTWWNHLESKAPELAAAGFTAIWLPPPSKSVSGSSMGYDPGDLYDLN 60
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 143
S+YGS+A+L+SLI A KGIK +AD+VINHR+
Sbjct: 61 -SRYGSEAELRSLIAALHAKGIKVIADIVINHRSGP------------------------ 95
Query: 144 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203
DTGEDF APD+DH NP VQ +L W+NWLK +IGFDGWRFDF
Sbjct: 96 -----------------DTGEDFGGAPDLDHTNPEVQNDLKAWLNWLKNDIGFDGWRFDF 138
Query: 204 VKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVA 263
VKGYAPS K Y E TSP F+VGE WD LSY NQD HR L DW+ A GG A
Sbjct: 139 VKGYAPSYVKEYNEATSPSFSVGEYWDGLSYE-------NQDAHRQRLVDWIDATGGGSA 191
Query: 264 AFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322
AFDFTTK ILQ AV E WRL+D GKPPG IG PQ AVTF+DNHDTGSTQ WPFP+
Sbjct: 192 AFDFTTKYILQEAVNNNEYWRLRDGQGKPPGLIGWWPQKAVTFVDNHDTGSTQGHWPFPT 251
Query: 323 DKVMLGYAYILTHPGTPCI 341
D V+ GYAYILTHPGTPC+
Sbjct: 252 DNVLQGYAYILTHPGTPCV 270
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 302 |
| >gnl|CDD|177990 PLN02361, PLN02361, alpha-amylase | Back alignment and domain information |
|---|
Score = 358 bits (921), Expect = e-122
Identities = 159/320 (49%), Positives = 209/320 (65%), Gaps = 16/320 (5%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+L Q FNWES W+ +L+ +PDL+ +G T WLPPPSQS+AP+GY+P LY L+
Sbjct: 13 ILLQAFNWESHKH--DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLN- 69
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
S YGS+ LKSL++ +Q ++ +AD+VINHR + G+Y ++G L W
Sbjct: 70 SAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIP----LPWDEH 125
Query: 145 FI--CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
+ C G G GN TG++F P+IDH V+K++ W+ WL+ ++GF +RFD
Sbjct: 126 AVTSCTG------GLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFD 179
Query: 203 FVKGYAPSITKVYMENTSPDFAVGEKWDSLSY-GPDGKPDANQDGHRGALKDWVQAAGGA 261
F KGY+ K Y+E P F+VGE WDS +Y GPD + D NQD HR + +W+ GG
Sbjct: 180 FAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGL 239
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
AAFDFTTKGILQ AV+G+ WRL+D+ GKPPG +G P AVTFIDNHDTGSTQ WPFP
Sbjct: 240 SAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFP 299
Query: 322 SDKVMLGYAYILTHPGTPCI 341
SD +M GYAYILTHPG P +
Sbjct: 300 SDHIMEGYAYILTHPGIPTV 319
|
Length = 401 |
| >gnl|CDD|215419 PLN02784, PLN02784, alpha-amylase | Back alignment and domain information |
|---|
Score = 367 bits (943), Expect = e-120
Identities = 164/329 (49%), Positives = 217/329 (65%), Gaps = 10/329 (3%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+L QGFNWES +K+G WY L +LS+ G T VWLPPP++SV+P+GYMP LY+L+
Sbjct: 504 ILCQGFNWES-HKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLN- 561
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
S+YG+ +LK L+++F + GIK L D V+NHR A ++ G++ IF G RL+W
Sbjct: 562 SRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-----RLNWDDR 616
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
+ D + G+GN +G++F AP+IDH V+K+L +W+ W++ E+G+DGWR DFV
Sbjct: 617 AVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFV 675
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAA 264
+G+ K YME + P FAVGE WDSLSY G+ D NQD HR + DW+ A G A
Sbjct: 676 RGFWGGYVKDYMEASEPYFAVGEYWDSLSYTY-GEMDYNQDAHRQRIVDWINATNGTAGA 734
Query: 265 FDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD 323
FD TTKGIL +A++ E WRL D GKPPG +G P AVTFI+NHDTGSTQ W FP
Sbjct: 735 FDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEG 794
Query: 324 KVMLGYAYILTHPGTPCIVISVTYPLFHP 352
K M GYAYILTHPGTP + + +HP
Sbjct: 795 KEMQGYAYILTHPGTPAVFYDHIFSHYHP 823
|
Length = 894 |
| >gnl|CDD|236518 PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 3e-50
Identities = 107/381 (28%), Positives = 145/381 (38%), Gaps = 88/381 (23%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDL 82
+ Q F W N G +N L P+L+ AGIT VWLPP + + GY L+DL
Sbjct: 6 MMQYFEWYLPND-GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDL 64
Query: 83 D--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINH------------------- 115
+KYG++ +L + I A + GIK AD+V+NH
Sbjct: 65 GEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDD 124
Query: 116 RTAERKDGRGI--------------YCIFE------GGTSDDRLDWGPSFICR---GDKE 152
RT + I Y F+ GT D S I + K
Sbjct: 125 RTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDE-SGIFKIVGDGKG 183
Query: 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
+ D +++ D+ DID +P V++EL W W GFDG+R D VK
Sbjct: 184 WDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFI 243
Query: 213 KVYMEN-----TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
K ++E+ F VGE W L+D+++ G FD
Sbjct: 244 KEWIEHVREVAGKDLFIVGEYW---------------SHDVDKLQDYLEQVEGKTDLFDV 288
Query: 268 TTKGILQAAVQGELWRLKDSNGKPPGFIGIL----PQNAVTFIDNHDTGSTQRL--WPFP 321
A + R D F G L P +AVTF+DNHDT Q L P
Sbjct: 289 PLHYNFHEASKQG--RDYDMRNI---FDGTLVEADPFHAVTFVDNHDTQPGQALESPVEP 343
Query: 322 SDKVMLGYAYILTHP-GTPCI 341
K L YA IL G PC+
Sbjct: 344 WFK-PLAYALILLREEGYPCV 363
|
Length = 479 |
| >gnl|CDD|200457 cd11318, AmyAc_bac_fung_AmyA, Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 3e-40
Identities = 113/386 (29%), Positives = 153/386 (39%), Gaps = 96/386 (24%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYD 81
+ Q F W G + L P+L+ GIT VWLPP + + GY LYD
Sbjct: 3 TMMQYFEWYLPAD-GQHWKRLAEDAPELAELGITAVWLPPAYKGASGTEDVGYDVYDLYD 61
Query: 82 L---D-----ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA--------------- 118
L D +KYG++ +L I+A + GI+ AD V+NH+
Sbjct: 62 LGEFDQKGTVRTKYGTKEELLEAIKALHENGIQVYADAVLNHKAGADETETVKAVEVDPN 121
Query: 119 -ERKDGRGIYCI-------FEG--GT-SDDRLDW------------GPSFICRGDKEYSD 155
K+ Y I F G G SD + +W I + + E
Sbjct: 122 DRNKEISEPYEIEAWTKFTFPGRGGKYSDFKWNWQHFSGVDYDQKTKKKGIFKINFEGKG 181
Query: 156 GQGNDDT---GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
+ D D+ DID+ NP V++EL W W G DG+R D VK + S
Sbjct: 182 WDEDVDDENGNYDYLMGADIDYSNPEVREELKRWGKWYINTTGLDGFRLDAVKHISASFI 241
Query: 213 KVYM----ENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
K ++ T D FAVGE W D AL+D++ A G ++ FD
Sbjct: 242 KDWIDHLRRETGKDLFAVGEYW---------SGDLE------ALEDYLDATDGKMSLFDV 286
Query: 268 TTKGIL-----QAAVQGELWRLKDSNGKPPGFIGIL----PQNAVTFIDNHDTGSTQRL- 317
L +A+ G + L+ F G L P AVTF+DNHDT Q L
Sbjct: 287 P----LHYNFHEASKSGGNYDLRKI------FDGTLVQSRPDKAVTFVDNHDTQPGQSLE 336
Query: 318 -WPFPSDKVMLGYAYILTHP-GTPCI 341
W P K L YA IL G PC+
Sbjct: 337 SWVEPWFKP-LAYALILLRKDGYPCV 361
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes bacterial and fungal proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 391 |
| >gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 7e-22
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA- 84
F + + G + + L + G+T +WL P +S PQGY YD+
Sbjct: 3 YPDRFADGNGDGGGDLQG-IIEKLDYLKDLGVTAIWLSPIFES--PQGYPSYHGYDISDY 59
Query: 85 ----SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118
++G+ D K L+ A +GIK + D+VINH +
Sbjct: 60 KQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97
|
Length = 166 |
| >gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 8e-22
Identities = 86/323 (26%), Positives = 127/323 (39%), Gaps = 62/323 (19%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL-DASK----YGSQADLKSLIQAFRQK 103
+ L + G+T +WL P S PQ Y YD+ D K +G+ D K LI ++
Sbjct: 10 LDYLKDLGVTAIWLSPIFDS--PQSYH---GYDITDYYKIDPHFGTMDDFKELIDKAHER 64
Query: 104 GIKCLADMVINHRT----------AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153
GIK + D+V NH + + + + Y I+ + +W F
Sbjct: 65 GIKVILDLVPNHTSDEHAWFQESRSSKDNPYRDYYIWRIYSPP--NNWISYFG------G 116
Query: 154 SDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK----GYA 208
S ++D F + PD++ NP V+KEL DW+ + G DG+R D VK G+
Sbjct: 117 SAWSDDEDGQYLFLVSLPDLNTENPEVRKELKDWVVKFWLDKGIDGFRIDAVKHISKGFW 176
Query: 209 PSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
T+ M PD F VGE W D + A L + F+F
Sbjct: 177 HEFTQ-EMNEYKPDVFTVGEVWGGS--DEDARVYAYN--SYMEL----------ESGFNF 221
Query: 268 TTKGILQAAVQGELWRLKDSNGKPPGFIGIL---------PQNAVTFIDNHDTGSTQRLW 318
+ Q +RL + K ++ VTF+ NHD +
Sbjct: 222 PHFDLGQNVFIP--FRLNPFSAK--DLKEMISSWQSDYPDVDWLVTFLGNHDQPRFLSRF 277
Query: 319 PFPSDKVMLGYAYILTHPGTPCI 341
S K+ L A +LT PGTP I
Sbjct: 278 GDDSAKIKLALALLLTLPGTPYI 300
|
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 314 |
| >gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 1e-17
Identities = 72/336 (21%), Positives = 113/336 (33%), Gaps = 33/336 (9%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD 92
GG + + L G+ +WL P +S A GY +D +G++ D
Sbjct: 20 PDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVD-PHFGTEED 78
Query: 93 LKSLIQAFRQKGIKCLADMVINH-----------RTAERKDGRGIYCIFEGGTSDDRL-- 139
K L++ ++GIK + D+V NH R+++ R Y I+ D
Sbjct: 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPN 138
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDG 198
+W F + G+ Q PD++ NP V++EL D + WL G DG
Sbjct: 139 NWFSVFGGDAWTWGNTGEYYLHLFSSEQ--PDLNWENPEVREELLDVVKFWLD--KGVDG 194
Query: 199 WRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 257
+R D K + E + E + +A D
Sbjct: 195 FRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYGEAITDVGEAPGAVKEDF 254
Query: 258 A-------GGAVAAFDFTTKGILQAAVQGELW-RLKDSNGKPPGFIGILPQNAVTFIDNH 309
A FDF+ G+ A+ LK+ P + + F+ NH
Sbjct: 255 ADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNLFLSNH 314
Query: 310 DTGSTQRLW----PFPSDKVMLGYAYILTHPGTPCI 341
D + L A + PGTP I
Sbjct: 315 DQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFI 350
|
Length = 505 |
| >gnl|CDD|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain found in maltogenic amylases, cyclodextrin glycosyltransferase, and related proteins | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 76/329 (23%), Positives = 117/329 (35%), Gaps = 54/329 (16%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQ---SVAP-------QGYMPGRLYDLDASKYG 88
GG + + + +P L + G+T +W+ PP + S GY + +G
Sbjct: 43 GGDWQGIIDKLPYLKDLGVTAIWISPPVENINSPIEGGGNTGYHGYWARDFKRTN-EHFG 101
Query: 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG-IYCI--FEGGTSDDRLDWGPSF 145
+ D L+ A GIK + D V NH + G +Y G +D W F
Sbjct: 102 TWEDFDELVDAAHANGIKVIIDFVPNHSSPADYAEDGALYDNGTLVGDYPNDDNGW---F 158
Query: 146 ICRGDKEYSDGQGNDDTGEDFQPA-----PDIDHLNPRVQKELSD-WMNWLKTEIGFDGW 199
G + E + D++ NP V + L D WL + G DG
Sbjct: 159 HHNGGI------DDWSDREQVRYKNLFDLADLNQSNPWVDQYLKDAIKFWL--DHGIDGI 210
Query: 200 RFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP--DGKPDANQDGHRGALKDWVQA 257
R D VK P K + + A+ K ++G G PD + D+V+
Sbjct: 211 RVDAVKHMPPGWQKSFAD------AIYSKKPVFTFGEWFLGSPDPGYE-------DYVKF 257
Query: 258 A---GGAVAAFDFTTKGILQ--AAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 312
A G ++ F I A ++ L + + VTFIDNHD
Sbjct: 258 ANNSGMSLLDFPLNQA-IRDVFAGFTATMYDLDAMLQQTSSDYNY-ENDLVTFIDNHDMP 315
Query: 313 STQRLWPFPSDKVMLGYAYILTHPGTPCI 341
++ A++LT G P I
Sbjct: 316 RF-LTLNNNDKRLHQALAFLLTSRGIPVI 343
|
Enzymes such as amylases, cyclomaltodextrinase (CDase), and cyclodextrin glycosyltransferase (CGTase) degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs), consisting of six, seven, or eight glucose residues, respectively. CGTases are characterized depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The maltogenic alpha-amylase from Bacillus is a five-domain structure, unlike most alpha-amylases, but similar to that of cyclodextrin glycosyltransferase. In addition to the A, B, and C domains, they have a domain D and a starch-binding domain E. Maltogenic amylase is an endo-acting amylase that has activity on cyclodextrins, terminally modified linear maltodextrins, and amylose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 77/336 (22%), Positives = 127/336 (37%), Gaps = 63/336 (18%)
Query: 30 FNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-------------PQGYMP 76
F+W +N++K ++P+++ AG T + PP +S P Y
Sbjct: 8 FDWS--------FNTIKENLPEIAAAGYTAIQTSPPQKSKEGGNEGGNWWYRYQPTDYRI 59
Query: 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD 136
G G++ D K+L A + GIK + D+V NH +G I ++ S
Sbjct: 60 GNNQL------GTEDDFKALCAAAHKYGIKIIVDVVFNHMA---NEGSAIEDLWYP--SA 108
Query: 137 DRLDWGPSFIC--RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194
D + P G ++D T PD++ NP VQ++ ++ L +
Sbjct: 109 DIELFSPEDFHGNGGISNWNDRW--QVTQGRLGGLPDLNTENPAVQQQQKAYLKALV-AL 165
Query: 195 GFDGWRFDFVK----GYAPSITKVYMENTSPDFAVGEKWDSLSYG---PDGKPDANQDGH 247
G DG+RFD K PS + N +K YG DG +
Sbjct: 166 GVDGFRFDAAKHIELPDEPSKASDFWTNI---LNNLDKDGLFIYGEVLQDGGSRDSD--- 219
Query: 248 RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP-QNAVTFI 306
++ G +A+ F L+ A++ L + P + LP AVT++
Sbjct: 220 ---YASYLSLGGVTASAYGFP----LRGALKNAF--LFGGSLDPASYGQALPSDRAVTWV 270
Query: 307 DNHDT--GSTQRLWPFPSDKVMLGYAYILTHP-GTP 339
++HDT + L +AY+ GTP
Sbjct: 271 ESHDTYNNDGFESTGLDDEDERLAWAYLAARDGGTP 306
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 352 |
| >gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 90/331 (27%), Positives = 130/331 (39%), Gaps = 78/331 (23%)
Query: 52 LSNAGITHVWLPP------PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI 105
L + G+T +WL P PS S GY Y +D ++GS D K L+ +G+
Sbjct: 54 LQDLGVTAIWLTPLLENDMPSYSY--HGYAATDFYRIDP-RFGSNEDYKELVSKAHARGM 110
Query: 106 KCLADMVIN-----HRTAER---KD---GRGIYCIFEGGTSDDRLDWGPSFICRGDKE-Y 153
K + DMV N H + KD Y T+ R + + D++ +
Sbjct: 111 KLIMDMVPNHCGSEHWWMKDLPTKDWINQTPEY----TQTNHRRTALQDPYASQADRKLF 166
Query: 154 SDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FV 204
DG F P PD++ NP V + L W G DG R D F+
Sbjct: 167 LDGW--------FVPTMPDLNQRNPLVARYLIQNSIWWIEYAGLDGIRVDTYPYSDKDFM 218
Query: 205 KGYAPSITKVYMENTSPDF-AVGEKWDS----LSYGPDGKPDANQDGHRGALKDWVQAAG 259
+ +I + Y P+F VGE+W ++Y GK N DG+ L
Sbjct: 219 SEWTKAIMEEY-----PNFNIVGEEWSGNPAIVAYWQKGK--KNPDGYDSHLP------- 264
Query: 260 GAVAAFDFTTKGILQAAVQGE------LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 313
+ DF + L+ A+ E L RL ++ F+ P N V F+DNHD
Sbjct: 265 ---SVMDFPLQDALRDALNEEEGWDTGLNRLYETLAN--DFLYPDPNNLVIFLDNHD--- 316
Query: 314 TQRLWPFPS---DKVMLGYAYILTHPGTPCI 341
T R + DK L A +LT G P +
Sbjct: 317 TSRFYSQVGEDLDKFKLALALLLTTRGIPQL 347
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 407 |
| >gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 5e-13
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL---YDLDASKYGSQ 90
S GG + + + L + G+T +WL P +S GY Y + G++
Sbjct: 16 SGGDGGGDLKGIIDKLDYLKDLGVTAIWLTPIFESPEYDGYDKDDGYLDYYEIDPRLGTE 75
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHR 116
D K L++A ++GIK + D+V NH
Sbjct: 76 EDFKELVKAAHKRGIKVILDLVFNHD 101
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260 |
| >gnl|CDD|200478 cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 75/315 (23%), Positives = 107/315 (33%), Gaps = 104/315 (33%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ-------GYMPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
+ + G T +W+ P ++ + Q GY Y +D G+ ADL+ LI A +G
Sbjct: 54 IKDLGFTAIWITPVVKNRSVQAGSAGYHGYWGYDFYRID-PHLGTDADLQDLIDAAHARG 112
Query: 105 IKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGE 164
IK + D+V+NH T D
Sbjct: 113 IKVILDIVVNH------------------TGD---------------------------- 126
Query: 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS-----ITKVYMENT 219
++ NP V L D W + G DG+R D VK +
Sbjct: 127 -------LNTENPEVVDYLIDAYKWW-IDTGVDGFRIDTVKHVPREFWQEFAPAIRQAAG 178
Query: 220 SPDFAV-GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG-ILQAAV 277
PDF + GE + DG + + AGG + DF G I A
Sbjct: 179 KPDFFMFGEVY---------------DGDPSYIAPYTTTAGG-DSVLDFPLYGAIRDAFA 222
Query: 278 QGE----LWRLKDSNGKPPGFIGILPQNA---VTFIDNHDTG----STQRLWPFPSDKVM 326
G L L S+ L +A VTF+DNHD G S + + ++
Sbjct: 223 GGGSGDLLQDLFLSDD--------LYNDATELVTFLDNHDMGRFLSSLKDGSADGTARLA 274
Query: 327 LGYAYILTHPGTPCI 341
L A + T G PCI
Sbjct: 275 LALALLFTSRGIPCI 289
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 344 |
| >gnl|CDD|200456 cd11317, AmyAc_bac_euk_AmyA, Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 59/271 (21%), Positives = 99/271 (36%), Gaps = 65/271 (23%)
Query: 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 139
Y L+ S+ G++A+ + ++ G++ D VINH + + R C L
Sbjct: 56 YKLN-SRSGTEAEFRDMVNRCNAAGVRVYVDAVINHMAGDANEVR--NC---------EL 103
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199
G D++ + V+ +++D++N L +G G+
Sbjct: 104 ----------------------VG-----LADLNTESDYVRDKIADYLNDL-ISLGVAGF 135
Query: 200 RFDFVKGYAPS-ITKVYMENTSPDFAVGEKWDSLSYGPDG-KPDANQ---DGHRGALKDW 254
R D K P + + + L+ GP G +P Q DG A++
Sbjct: 136 RIDAAKHMWPEDLAAIL-----------ARLKDLNGGPLGSRPYIYQEVIDGGGEAIQPS 184
Query: 255 VQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT--- 311
G V F + G+ A L + G+ G + + AV F+DNHD
Sbjct: 185 EYTGNGDVTEFRYAR-GLSNAFRGKIKLLLLKNFGEGWGLLP--SERAVVFVDNHDNQRG 241
Query: 312 --GSTQRLWPFPSDKVMLGYAYILTHP-GTP 339
G L + L A++L P GTP
Sbjct: 242 HGGGGDMLTYKDGRRYKLANAFMLAWPYGTP 272
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA proteins from bacteria, fungi, mammals, insects, mollusks, and nematodes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 329 |
| >gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 78/334 (23%), Positives = 117/334 (35%), Gaps = 92/334 (27%)
Query: 56 GITHVWLPP--PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113
G+ +WL P PS S GY Y ++ YG+ D + LI ++GIK + D+VI
Sbjct: 36 GVNGIWLMPIFPSPSY--HGYDVTDYYAIE-PDYGTMEDFERLIAEAHKRGIKVIIDLVI 92
Query: 114 NHRTAER----KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDT------G 163
NH T+ ++ S R D+ +I D + G
Sbjct: 93 NH-TSSEHPWFQEAA------SSPDSPYR-DY---YIWADDDPGGWSSWGGNVWHKAGDG 141
Query: 164 EDFQPA-----PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
+ A PD++ NP V++E+ W++ G DG+R D K +
Sbjct: 142 GYYYGAFWSGMPDLNLDNPAVREEIKKIAKFWLD-----KGVDGFRLDAAKHIYENGEGQ 196
Query: 215 ---------------YMENTSPD-FAVGEKWDSLS-YGPDGKPDANQDGHRGALKDWVQA 257
Y+++ PD + VGE WD S P
Sbjct: 197 ADQEENIEFWKEFRDYVKSVKPDAYLVGEVWDDPSTIAPY-------------------Y 237
Query: 258 AGGAVAAFDFT-TKGILQAAVQGELW-----RLKDSNGK----PPGFIGILPQNAVTFID 307
A G +AF+F + I+ + G L P +I +A F+
Sbjct: 238 ASGLDSAFNFDLAEAIIDSVKNGGSGAGLAKALLRVYELYAKYNPDYI-----DA-PFLS 291
Query: 308 NHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
NHD K L A +LT PG P I
Sbjct: 292 NHDQDRVASQLGGDEAKAKLAAALLLTLPGNPFI 325
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403 |
| >gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 1e-09
Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 75/284 (26%)
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINH--------RTAERKDGRGIYCIFEGGTSDDR 138
G++ D K L++ ++GI+ + D V NH + + Y
Sbjct: 99 LGTEEDFKELVEEAHKRGIRVILDGVFNHTGDDSPYFQDVLKYGESSAY----------- 147
Query: 139 LDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFD 197
I ++D N ++ P ++ NP V++ L WLK E D
Sbjct: 148 --QDWFSIYYFWPYFTDEPPNYESWWGVPSLPKLNTENPEVREYLDSVARYWLK-EGDID 204
Query: 198 GWRFD--------FVKGYAPSITKVYMENTSPDFA-VGEKWDSLSYGPDGKPDANQD--- 245
GWR D F + K ++ +PD +GE W+ D +P D
Sbjct: 205 GWRLDVADEVPHEFWRE----FRKA-VKAVNPDAYIIGEVWE------DARPWLQGDQFD 253
Query: 246 -----GHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300
R A+ D++ AG + A +F + L L+ + K
Sbjct: 254 SVMNYPFRDAVLDFL--AGEEIDAEEFANR----------LNSLRANYPKQVL------Y 295
Query: 301 NAVTFIDNHDTGSTQR-LWPFPSDK--VMLGYAYILTHPGTPCI 341
+ +D+HDT R L DK + L A T PG PCI
Sbjct: 296 AMMNLLDSHDT---PRILTLLGGDKARLKLALALQFTLPGAPCI 336
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 36/172 (20%)
Query: 54 NAGITHVWLPPPSQSV--------APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI 105
G +W+ P +++ A GY LY L+ +G+ DLK+L +A ++G+
Sbjct: 54 GMGFDAIWISPIVKNIEGNTAYGEAYHGYWAQDLYSLN-PHFGTADDLKALSKALHKRGM 112
Query: 106 KCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS------DGQGN 159
+ D+V+NH +D+ SF+ D Y N
Sbjct: 113 YLMVDVVVNH--------------MASAGPGSDVDYS-SFVPFNDSSYYHPYCWITDYNN 157
Query: 160 DD------TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205
G+D PD++ NP V L+DW+ L + DG R D K
Sbjct: 158 QTSVEDCWLGDDVVALPDLNTENPFVVSTLNDWIKNLVSNYSIDGLRIDTAK 209
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes eukaryotic alpha-amylases including proteins from fungi, sponges, and protozoans. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 375 |
| >gnl|CDD|200491 cd11354, AmyAc_bac_CMD_like, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 71/286 (24%), Positives = 105/286 (36%), Gaps = 81/286 (28%)
Query: 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 139
Y +D + G D +LI A ++G++ L D V NH + +G S++
Sbjct: 67 YRID-PRLGDDEDFDALIAAAHERGLRVLLDGVFNHVGRSHPAVAQA--LEDGPGSEEDR 123
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDG 198
G + G + +G++D ++DH +P V + D M WL + G DG
Sbjct: 124 WHGHA----GGGTPAVFEGHEDL-------VELDHSDPAVVDMVVDVMCHWL--DRGIDG 170
Query: 199 WRFDFVKGYAPSITKVYMENTSPDF------AVGEKWDSLSYGPDGKPDANQDGHRGALK 252
WR D YA P+F V E+ PDA
Sbjct: 171 WRLDAA--YA----------VPPEFWARVLPRVRERH----------PDA---------- 198
Query: 253 DWVQAAGGAVAAFD---FTTKGILQAAVQGELWR-----LKDSN--------GKPPGFI- 295
W+ G V D + + Q ELW+ +KD N G+ F+
Sbjct: 199 -WIL---GEVIHGDYAGIVAASGMDSVTQYELWKAIWSSIKDRNFFELDWALGRHNEFLD 254
Query: 296 GILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
+PQ TF+ NHD T+ D L A + T PG P I
Sbjct: 255 SFVPQ---TFVGNHDV--TRIASQVGDDGAALAAAVLFTVPGIPSI 295
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 357 |
| >gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 34/175 (19%)
Query: 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ------GYMPGRLYDLDASKYGSQADLKS 95
+ + + + L + G+ + L P V GY P + LD + YG+ DLK
Sbjct: 32 FKGVIDKLDYLQDLGVNAIELMP----VQEFPGNDSWGYNPRHYFALDKA-YGTPEDLKR 86
Query: 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLD---WGPSFICRGDKE 152
L+ Q+GI + D+V NH +G+ RL W
Sbjct: 87 LVDECHQRGIAVILDVVYNH-----AEGQSPLA---------RLYWDYWYNPPPADPPWF 132
Query: 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
G G DF +H +P + + D + E DG+RFD KG+
Sbjct: 133 NVWGPHFYYVGYDF------NHESPPTRDFVDDVNRYWLEEYHIDGFRFDLTKGF 181
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 390 |
| >gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 4e-07
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 40/178 (22%)
Query: 52 LSNAGITHVWLPP--PSQSVAPQGYMPGR--------LYDLDASKYGSQADLKSLIQAFR 101
L G+T +WL P PS P R Y +D + G+ D ++
Sbjct: 36 LQWLGVTAIWLLPFYPS---------PLRDDGYDIADYYGVD-PRLGTLGDFVEFLREAH 85
Query: 102 QKGIKCLADMVINHRTAE-------RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
++GI+ + D+V+NH + + R+D Y + + I D E S
Sbjct: 86 ERGIRVIIDLVVNHTSDQHPWFQAARRDPDSPYRDYYVWSDTPPKYKDARIIFP-DVEKS 144
Query: 155 DGQGNDDTGE-------DFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFV 204
+ ++ G Q PD++ NP V++E+ M+ WL ++G DG+R D V
Sbjct: 145 NWTWDEVAGAYYWHRFYSHQ--PDLNFDNPAVREEILRIMDFWL--DLGVDGFRLDAV 198
|
Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447 |
| >gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 67/194 (34%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+ GI +WL P +S P GY D+D +G+ D + LI ++ G+K +
Sbjct: 39 FKDIGIDAIWLSPIFKS--PMVDFGYDISDFTDID-PIFGTMEDFEELIAEAKKLGLKVI 95
Query: 109 ADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI--CRGDKEYSD------GQGND 160
D V NH S D +W F + D+ Y D G+ ND
Sbjct: 96 LDFVPNH-------------------SSDEHEW---FQKSVKRDEPYKDYYVWHDGKNND 133
Query: 161 DTGED---------------------------FQP-APDIDHLNPRVQKELSDWMN-WLK 191
+ F PD+++ NP+V +E+ + + WL
Sbjct: 134 NGTRVPPNNWLSVFGGSAWTWNEERQQYYLHQFAVKQPDLNYRNPKVVEEMKNVLRFWL- 192
Query: 192 TEIGFDGWRFDFVK 205
+ G DG+R D V
Sbjct: 193 -DKGVDGFRIDAVP 205
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. In most cases, maltase is equivalent to alpha-glucosidase, but the term "maltase" emphasizes the disaccharide nature of the substrate from which glucose is cleaved, and the term "alpha-glucosidase" emphasizes the bond, whether the substrate is a disaccharide or polysaccharide. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 470 |
| >gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 56 GITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112
G+ VWL P +S P GY D+D +G+ D + L+ A +G+K + D V
Sbjct: 41 GVKTVWLSPIYKS--PMKDFGYDVSDFTDIDPM-FGTMEDFERLLAAMHDRGMKLIMDFV 97
Query: 113 INH---------RTAERKDGRGIYCIFEGGTSDDRLD--------WGPSFICRGDKEYSD 155
NH + + Y I+ T+D +G S EY +
Sbjct: 98 PNHTSDKHEWFQLSRNSTNPYTDYYIWADCTADGPGTPPNNWVSVFGNSAW-----EYDE 152
Query: 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVK 205
+ + + PD++ NP VQ+E+ D + WL G DG+R D VK
Sbjct: 153 KRNQCYLHQFLKEQPDLNFRNPDVQQEMDDVLRFWLDK--GVDGFRVDAVK 201
|
SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456 |
| >gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 29/165 (17%)
Query: 56 GITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112
G+ ++WL P S PQ GY Y ++ +G+ AD + L+ +++ IK + DMV
Sbjct: 40 GVDYIWLNPFYVS--PQKDNGYDVSDYYAINPL-FGTMADFEELVSEAKKRNIKIMLDMV 96
Query: 113 INHRTAE----RKDGRGI-----YCIFEGGTSDDRLDW-----GPSFICRGDKEYSDGQG 158
NH + E +K G + I+ +W G ++ GD
Sbjct: 97 FNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHL 156
Query: 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFD 202
D T D++ NP V++EL D +N W + G DG+R D
Sbjct: 157 FDKT------QADLNWENPEVREELKDVVNFWR--DKGVDGFRLD 193
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. Length = 543 |
| >gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 30/192 (15%)
Query: 33 ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY----- 87
+S+ G + L + + L G+ +WL P QS P R D S Y
Sbjct: 18 DSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQS-------PLRDDGYDVSDYRAILP 70
Query: 88 --GSQADLKSLIQAFRQKGIKCLADMVINHRT-------AERKDGRGIYCIFEGGTSDDR 138
G+ D K + +G++ + D+V+NH + R + G Y F SD
Sbjct: 71 EFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFY-VWSDTD 129
Query: 139 LDWGPSFICRGDKEYSDGQGNDDTGED-----FQPAPDIDHLNPRVQKELSDWMN-WLKT 192
+ + I D E S+ + + F PD+++ NP V + D M WL
Sbjct: 130 EKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-- 187
Query: 193 EIGFDGWRFDFV 204
++G DG+R D V
Sbjct: 188 DLGVDGFRLDAV 199
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530) [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 539 |
| >gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 40/207 (19%)
Query: 46 KNSIPDLSNAGITHVWLPP----------PSQSVA------PQGYM-PGRLYDLDASKYG 88
I L + G+T V L P + P + P Y +
Sbjct: 203 PVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPAT 262
Query: 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR 148
+ K +++A + GI+ + D+V NH TAE + G F G +D +
Sbjct: 263 RIKEFKDMVKALHKAGIEVILDVVFNH-TAE-GNELGPTLSFRG------IDPNYYYRLD 314
Query: 149 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208
D YS+G G +T ++ +P V+K + D + + E DG+RFD A
Sbjct: 315 PDGYYSNGTGCGNT---------LNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDL----A 361
Query: 209 PSITKVYMEN--TSPDFAVGEKWDSLS 233
+ + M + F GE LS
Sbjct: 362 GVLGRETMLFDINANLFLAGEGDPVLS 388
|
Length = 697 |
| >gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 58/278 (20%), Positives = 91/278 (32%), Gaps = 78/278 (28%)
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDD------ 137
+YG+ D K+L+ +G+K + D V NH T+ D
Sbjct: 69 NPEYGTLEDFKALVDEAHDRGMKVILDWVANH------------------TAWDHPLVEE 110
Query: 138 RLDWGPSFICRGDKEYSDGQGND-DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196
+W + D GN + D+ D+D+ NP ++ + D M + E
Sbjct: 111 HPEW---Y-------LRDSDGNITNKVFDWTDVADLDYSNPELRDYMIDAMKYWVREFDV 160
Query: 197 DGWRFDFVKGYAP------SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGA 250
DG+R D V P + ++ PD + + D D A
Sbjct: 161 DGFRCD-VAWGVPLDFWKEARAELRAVK--PDVF----MLAEAEPRDD------DELYSA 207
Query: 251 LKDWVQAAGGAVAAFDFTTKGILQAAVQGE--LWRLKDSNGKPPGFIGILPQNAV--TFI 306
D +D+ L +G+ L D+ P+NAV F+
Sbjct: 208 F-D---------MTYDWDLHHTLNDVAKGKASASDLLDALNA---QEAGYPKNAVKMRFL 254
Query: 307 DNHDTGSTQRLW---PFPSDKVMLGYAYILTHPGTPCI 341
+NHD W D + A T PG P I
Sbjct: 255 ENHDENR----WAGTVGEGDALRAAAALSFTLPGMPLI 288
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 336 |
| >gnl|CDD|200468 cd11329, AmyAc_maltase-like, Alpha amylase catalytic domain family found in maltase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 37/178 (20%)
Query: 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK 103
+ + +S G V P+ + YG ++DLK L++ +QK
Sbjct: 80 FKEEHVEAISKLGAKGVIYELPADETY------------LNNSYGVESDLKELVKTAKQK 127
Query: 104 GIKCLADMVINH---------RTAERKDGRGIYCIF-EGGTSDDRLDW-----GPSFICR 148
IK + D+ NH + ++ ++ +G +W G ++
Sbjct: 128 DIKVILDLTPNHSSKQHPLFKDSVLKEPPYRSAFVWADGKGHTPPNNWLSVTGGSAWKWV 187
Query: 149 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVK 205
D++Y Q D PD++ NP V EL D + WL +G G+R K
Sbjct: 188 EDRQYYLHQFGPDQ-------PDLNLNNPAVVDELKDVLKHWLD--LGVRGFRLANAK 236
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 477 |
| >gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
L G+ +WL P V+PQ GY +D + YG+ D L+ + +GI+ +
Sbjct: 42 LQKLGVDAIWLTP--FYVSPQVDNGYDVANYTAIDPT-YGTLDDFDELVAQAKSRGIRII 98
Query: 109 ADMVINHRTAE 119
DMV NH + +
Sbjct: 99 LDMVFNHTSTQ 109
|
Length = 551 |
| >gnl|CDD|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in glycogen debranching enzymes | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 7e-04
Identities = 46/185 (24%), Positives = 69/185 (37%), Gaps = 61/185 (32%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQ-----------GYM------PGRLYDLDASKYGSQA 91
IP L G+T V L P + GY P Y D + G
Sbjct: 50 IPYLKELGVTAVELLPVHAFDDEEHLVERGLTNYWGYNTLNFFAPDPRYASDDAPGGPVD 109
Query: 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG-- 149
+ K++++A + GI+ + D+V NH TA EGG + GP+ RG
Sbjct: 110 EFKAMVKALHKAGIEVILDVVYNH-TA------------EGG------ELGPTLSFRGLD 150
Query: 150 ----------DKEYSD--GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197
Y + G GN + +H P V + + D + + TE+ D
Sbjct: 151 NASYYRLDPDGPYYLNYTGCGN---------TLNTNH--PVVLRLILDSLRYWVTEMHVD 199
Query: 198 GWRFD 202
G+RFD
Sbjct: 200 GFRFD 204
|
Debranching enzymes facilitate the breakdown of glycogen through glucosyltransferase and glucosidase activity. These activities are performed by a single enzyme in mammals, yeast, and some bacteria, but by two distinct enzymes in Escherichia coli and other bacteria. Debranching enzymes perform two activities: 4-alpha-D-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). 4-alpha-D-glucanotransferase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. In Escherichia coli, GlgX is the debranching enzyme and malQ is the 4-alpha-glucanotransferase. TreX, an archaeal glycogen-debranching enzyme has dual activities like mammals and yeast, but is structurally similar to GlgX. TreX exists in two oligomeric states, a dimer and tetramer. Isoamylase (EC 3.2.1.68) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen and their beta-limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 433 |
| >gnl|CDD|237739 PRK14510, PRK14510, putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 9e-04
Identities = 32/192 (16%), Positives = 51/192 (26%), Gaps = 47/192 (24%)
Query: 61 WLPPPSQSVAPQGYMPGRLYDLDASKYGSQA--DLKSLIQAFRQKGIKCLADMVINHRTA 118
P GY D + + I+ + GI + D+V NH T
Sbjct: 216 HHLPQLGLSNYWGYNTVAFLAPDP-RLAPGGEEEFAQAIKEAQSAGIAVILDVVFNH-TG 273
Query: 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE---YSDGQGN-----DDTGEDFQPAP 170
E + GP+ G Y GN + G P
Sbjct: 274 E----------------SNHY--GPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNL 315
Query: 171 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD-----------FVKGYAPSITKVYMENT 219
+ + L W + G DG+R D F+ + + + +
Sbjct: 316 ERPFILRLPMDVLRSWA-----KRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPV 370
Query: 220 SPDFA-VGEKWD 230
+ E WD
Sbjct: 371 LRRLKMIAEVWD 382
|
Length = 1221 |
| >gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
G+ +WL P S PQ GY P ++G+ D LI+ ++G
Sbjct: 38 GVDAIWLSPIYPS--PQVDNGYDISDYRAIDP---------EFGTMEDFDELIKEAHKRG 86
Query: 105 IKCLADMVINH 115
IK + D+V+NH
Sbjct: 87 IKIIMDLVVNH 97
|
The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428 |
| >gnl|CDD|200476 cd11337, AmyAc_CMD_like, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 61/279 (21%), Positives = 84/279 (30%), Gaps = 105/279 (37%)
Query: 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFIC 147
G+ D K+L+ A ++GI+ + D V NH GR + W
Sbjct: 71 GTNEDFKALVAALHERGIRVVLDGVFNHV------GRDFF-------------WE----- 106
Query: 148 RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKG 206
G+ D ++ NP V L D + W++ E DG R D
Sbjct: 107 ----------GHYDL-------VKLNLDNPAVVDYLFDVVRFWIE-EFDIDGLRLD---- 144
Query: 207 YAPSITKVYMENTSPDFAVGEKWDSLSYGPDG-KPDANQDG---HRGALKDWVQAAGGAV 262
A + PDF W L KPD G H G WV +
Sbjct: 145 AAYCL--------DPDF-----WRELRPFCRELKPDFWLMGEVIH-GDYNRWVNDSM--- 187
Query: 263 AAFDFTTKGILQAAVQGELWR-----LKDSN----------GKPPG--FIGILPQNAVTF 305
L + EL++ D N + G F
Sbjct: 188 ----------LDSVTNYELYKGLWSSHNDHNFFEIAHSLNRLFRHNGLYRGFHLYT---F 234
Query: 306 IDNHDTG---STQRLWPFPSDKVMLGYAYILTHPGTPCI 341
+DNHD S + L YA + T PG P I
Sbjct: 235 VDNHDVTRIASILG----DKAHLPLAYALLFTMPGIPSI 269
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 328 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 358 | |||
| PLN00196 | 428 | alpha-amylase; Provisional | 100.0 | |
| PLN02361 | 401 | alpha-amylase | 100.0 | |
| PLN02784 | 894 | alpha-amylase | 100.0 | |
| PRK09441 | 479 | cytoplasmic alpha-amylase; Reviewed | 100.0 | |
| PRK10785 | 598 | maltodextrin glucosidase; Provisional | 100.0 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 100.0 | |
| TIGR02403 | 543 | trehalose_treC alpha,alpha-phosphotrehalase. Treha | 100.0 | |
| PRK09505 | 683 | malS alpha-amylase; Reviewed | 100.0 | |
| PRK10933 | 551 | trehalose-6-phosphate hydrolase; Provisional | 100.0 | |
| PF00128 | 316 | Alpha-amylase: Alpha amylase, catalytic domain; In | 100.0 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 100.0 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 100.0 | |
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 100.0 | |
| PRK13840 | 495 | sucrose phosphorylase; Provisional | 100.0 | |
| PRK03705 | 658 | glycogen debranching enzyme; Provisional | 100.0 | |
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 100.0 | |
| TIGR03852 | 470 | sucrose_gtfA sucrose phosphorylase. In the forward | 100.0 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 100.0 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 100.0 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 100.0 | |
| PRK14706 | 639 | glycogen branching enzyme; Provisional | 100.0 | |
| COG0366 | 505 | AmyA Glycosidases [Carbohydrate transport and meta | 100.0 | |
| KOG0471 | 545 | consensus Alpha-amylase [Carbohydrate transport an | 100.0 | |
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 100.0 | |
| PLN02960 | 897 | alpha-amylase | 100.0 | |
| PRK14705 | 1224 | glycogen branching enzyme; Provisional | 100.0 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 100.0 | |
| TIGR02455 | 688 | TreS_stutzeri trehalose synthase, Pseudomonas stut | 100.0 | |
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 100.0 | |
| TIGR02103 | 898 | pullul_strch alpha-1,6-glucosidases, pullulanase-t | 100.0 | |
| COG1523 | 697 | PulA Type II secretory pathway, pullulanase PulA a | 100.0 | |
| PLN02877 | 970 | alpha-amylase/limit dextrinase | 100.0 | |
| KOG0470 | 757 | consensus 1,4-alpha-glucan branching enzyme/starch | 100.0 | |
| KOG2212 | 504 | consensus Alpha-amylase [Carbohydrate transport an | 99.98 | |
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 99.97 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 99.96 | |
| PLN03244 | 872 | alpha-amylase; Provisional | 99.96 | |
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 99.92 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 99.88 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 99.79 | |
| TIGR01531 | 1464 | glyc_debranch glycogen debranching enzymye. glycog | 99.79 | |
| PF14872 | 811 | GHL5: Hypothetical glycoside hydrolase 5 | 99.38 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 98.99 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 98.87 | |
| PF02638 | 311 | DUF187: Glycosyl hydrolase like GH101; InterPro: I | 98.84 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 98.83 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 98.61 | |
| PRK14508 | 497 | 4-alpha-glucanotransferase; Provisional | 98.47 | |
| COG1649 | 418 | Uncharacterized protein conserved in bacteria [Fun | 98.28 | |
| PLN02635 | 538 | disproportionating enzyme | 98.27 | |
| cd06593 | 308 | GH31_xylosidase_YicI YicI alpha-xylosidase is a gl | 98.07 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 98.03 | |
| KOG3625 | 1521 | consensus Alpha amylase [Carbohydrate transport an | 97.93 | |
| PF02446 | 496 | Glyco_hydro_77: 4-alpha-glucanotransferase; InterP | 97.9 | |
| cd06592 | 303 | GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact | 97.89 | |
| PF02065 | 394 | Melibiase: Melibiase; InterPro: IPR000111 O-Glycos | 97.83 | |
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 97.51 | |
| cd06599 | 317 | GH31_glycosidase_Aec37 Glycosyl hydrolase family 3 | 97.49 | |
| cd06597 | 340 | GH31_transferase_CtsY CtsY (cyclic tetrasaccharide | 97.49 | |
| PF13200 | 316 | DUF4015: Putative glycosyl hydrolase domain | 97.47 | |
| PRK14582 | 671 | pgaB outer membrane N-deacetylase; Provisional | 97.47 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 97.46 | |
| cd06594 | 317 | GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl | 97.26 | |
| cd06591 | 319 | GH31_xylosidase_XylS XylS is a glycosyl hydrolase | 97.17 | |
| PF13199 | 559 | Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: | 97.07 | |
| cd06600 | 317 | GH31_MGAM-like This family includes the following | 96.92 | |
| PRK10426 | 635 | alpha-glucosidase; Provisional | 96.89 | |
| TIGR00217 | 513 | malQ 4-alpha-glucanotransferase. This enzyme is kn | 96.87 | |
| PRK10658 | 665 | putative alpha-glucosidase; Provisional | 96.74 | |
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 96.68 | |
| cd06602 | 339 | GH31_MGAM_SI_GAA This family includes the followin | 96.56 | |
| PF14488 | 166 | DUF4434: Domain of unknown function (DUF4434) | 96.5 | |
| cd06598 | 317 | GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide | 96.5 | |
| PRK11052 | 695 | malQ 4-alpha-glucanotransferase; Provisional | 96.43 | |
| cd06604 | 339 | GH31_glucosidase_II_MalA Alpha-glucosidase II (alp | 96.42 | |
| PF01055 | 441 | Glyco_hydro_31: Glycosyl hydrolases family 31 ; In | 96.08 | |
| cd06542 | 255 | GH18_EndoS-like Endo-beta-N-acetylglucosaminidases | 95.93 | |
| cd06562 | 348 | GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c | 95.88 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 95.59 | |
| COG1501 | 772 | Alpha-glucosidases, family 31 of glycosyl hydrolas | 95.55 | |
| cd06595 | 292 | GH31_xylosidase_XylS-like This family represents a | 95.27 | |
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 95.25 | |
| COG1640 | 520 | MalQ 4-alpha-glucanotransferase [Carbohydrate tran | 95.23 | |
| PLN02950 | 909 | 4-alpha-glucanotransferase | 94.96 | |
| cd06603 | 339 | GH31_GANC_GANAB_alpha This family includes the clo | 94.87 | |
| KOG1065 | 805 | consensus Maltase glucoamylase and related hydrola | 94.86 | |
| PLN03236 | 745 | 4-alpha-glucanotransferase; Provisional | 94.73 | |
| cd06568 | 329 | GH20_SpHex_like A subgroup of the Glycosyl hydrola | 94.73 | |
| cd06569 | 445 | GH20_Sm-chitobiase-like The chitobiase of Serratia | 94.67 | |
| COG3589 | 360 | Uncharacterized conserved protein [Function unknow | 94.66 | |
| PLN02763 | 978 | hydrolase, hydrolyzing O-glycosyl compounds | 94.59 | |
| PRK09936 | 296 | hypothetical protein; Provisional | 94.5 | |
| PF05913 | 357 | DUF871: Bacterial protein of unknown function (DUF | 94.39 | |
| cd06563 | 357 | GH20_chitobiase-like The chitobiase of Serratia ma | 94.2 | |
| cd06601 | 332 | GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) | 94.19 | |
| cd02742 | 303 | GH20_hexosaminidase Beta-N-acetylhexosaminidases o | 94.13 | |
| cd06564 | 326 | GH20_DspB_LnbB-like Glycosyl hydrolase family 20 ( | 94.05 | |
| PRK11052 | 695 | malQ 4-alpha-glucanotransferase; Provisional | 93.73 | |
| cd06565 | 301 | GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) | 93.69 | |
| cd06570 | 311 | GH20_chitobiase-like_1 A functionally uncharacteri | 93.67 | |
| TIGR01370 | 315 | cysRS possible cysteinyl-tRNA synthetase, Methanoc | 93.67 | |
| COG3867 | 403 | Arabinogalactan endo-1,4-beta-galactosidase [Carbo | 93.56 | |
| cd02875 | 358 | GH18_chitobiase Chitobiase (also known as di-N-ace | 93.12 | |
| cd02871 | 312 | GH18_chitinase_D-like GH18 domain of Chitinase D ( | 93.1 | |
| cd06545 | 253 | GH18_3CO4_chitinase The Bacteroides thetaiotaomicr | 92.88 | |
| cd06589 | 265 | GH31 The enzymes of glycosyl hydrolase family 31 ( | 92.34 | |
| PF00728 | 351 | Glyco_hydro_20: Glycosyl hydrolase family 20, cata | 92.1 | |
| PF10566 | 273 | Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: | 91.98 | |
| PF14883 | 294 | GHL13: Hypothetical glycosyl hydrolase family 13 | 91.81 | |
| PF02449 | 374 | Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 | 90.7 | |
| PF03198 | 314 | Glyco_hydro_72: Glucanosyltransferase; InterPro: I | 90.44 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 90.23 | |
| smart00812 | 384 | Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydro | 90.11 | |
| PLN03059 | 840 | beta-galactosidase; Provisional | 89.86 | |
| KOG3625 | 1521 | consensus Alpha amylase [Carbohydrate transport an | 89.82 | |
| TIGR03356 | 427 | BGL beta-galactosidase. | 89.77 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 89.03 | |
| COG1306 | 400 | Uncharacterized conserved protein [Function unknow | 88.82 | |
| PLN03236 | 745 | 4-alpha-glucanotransferase; Provisional | 87.92 | |
| PF01301 | 319 | Glyco_hydro_35: Glycosyl hydrolases family 35; Int | 86.79 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 86.07 | |
| PF01120 | 346 | Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR00 | 85.71 | |
| PLN02950 | 909 | 4-alpha-glucanotransferase | 85.4 | |
| COG2342 | 300 | Predicted extracellular endo alpha-1,4 polygalacto | 84.12 | |
| COG2730 | 407 | BglC Endoglucanase [Carbohydrate transport and met | 83.15 | |
| PF13204 | 289 | DUF4038: Protein of unknown function (DUF4038); PD | 83.11 | |
| PRK15447 | 301 | putative protease; Provisional | 82.59 | |
| PRK09856 | 275 | fructoselysine 3-epimerase; Provisional | 82.57 | |
| cd02874 | 313 | GH18_CFLE_spore_hydrolase Cortical fragment-lytic | 82.42 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 82.13 | |
| PRK14581 | 672 | hmsF outer membrane N-deacetylase; Provisional | 81.73 | |
| PRK13210 | 284 | putative L-xylulose 5-phosphate 3-epimerase; Revie | 81.49 | |
| cd06547 | 339 | GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENG | 80.9 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 80.51 |
| >PLN00196 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-72 Score=528.91 Aligned_cols=343 Identities=63% Similarity=1.191 Sum_probs=294.3
Q ss_pred hhhhhhhhhh--cCCCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCC
Q 018278 7 FCFLSFLLAI--FLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84 (358)
Q Consensus 7 ~~~~~~~~~~--~~~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~ 84 (358)
.||++|++++ .|....++||+|.|+|++..+.||++++|+++|+||++||||+|||+|++++.++|||++.|||++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~ 85 (428)
T PLN00196 6 LSMILLLVLLGLSSNLAAGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDA 85 (428)
T ss_pred hHHHHHHHHhccCcccCCCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCc
Confidence 5555555544 45555789999999999977778999999999999999999999999999999999999999999982
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCC
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGE 164 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (358)
++|||.+||++||++||++||+||+|+|+||++.++....+.|..|.++.++++.+|.....+.+...|.++.+++..+.
T Consensus 86 ~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 165 (428)
T PLN00196 86 SKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGA 165 (428)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCC
Confidence 39999999999999999999999999999999988875555677787777777788877666665556666666777888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCCCCCCCCCC
Q 018278 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQ 244 (358)
Q Consensus 165 ~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~~~~ 244 (358)
++..+||||++||+||++|+++++||++++||||||+|+|+|++.+|+++++++.+|.|+|||.|.+.+|++.+..++++
T Consensus 166 ~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~ 245 (428)
T PLN00196 166 DFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQ 245 (428)
T ss_pred CCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccc
Confidence 89999999999999999999999999888999999999999999999999999889999999999987666666777776
Q ss_pred CCchhhHHHHHHhcCCc---eeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCC
Q 018278 245 DGHRGALKDWVQAAGGA---VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321 (358)
Q Consensus 245 ~~~~~~~~~~~~~~~~~---~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~ 321 (358)
+.+++.+.+|+...++. ..+|||++...+..++.++.+++.+......+.....|..+|+|++|||++|+++.....
T Consensus 246 ~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~ 325 (428)
T PLN00196 246 NAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFP 325 (428)
T ss_pred hhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCc
Confidence 66778888999876543 458999998877777777777776665555566777899999999999999999987767
Q ss_pred cchHHHHHHHHHcCCCeeeeecCccccC
Q 018278 322 SDKVMLGYAYILTHPGTPCIVISVTYPL 349 (358)
Q Consensus 322 ~~~~~~a~a~l~~~pG~P~IyyGdE~G~ 349 (358)
.++.++|+|++||+||+||||||+-++.
T Consensus 326 ~~~~~lAyA~iLT~pG~P~IyYg~~~~~ 353 (428)
T PLN00196 326 SDKVMQGYAYILTHPGNPCIFYDHFFDW 353 (428)
T ss_pred cchHHHHHHHHHcCCCcceEeeCCCcCc
Confidence 7788999999999999999999998764
|
|
| >PLN02361 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=492.56 Aligned_cols=317 Identities=49% Similarity=0.970 Sum_probs=266.4
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H 101 (358)
..+||+|.|+|++.. ...|++|+++|+||++||||+|||+|++++.++|||++.|||+++ ++|||.+||++||++||
T Consensus 10 ~~~v~lQ~F~W~~~~--~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h 86 (401)
T PLN02361 10 GREILLQAFNWESHK--HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLN-SAYGSEHLLKSLLRKMK 86 (401)
T ss_pred CCcEEEEEEeccCCc--cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccC-cccCCHHHHHHHHHHHH
Confidence 578999999999974 358999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 018278 102 QKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181 (358)
Q Consensus 102 ~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~ 181 (358)
++||+||+|+|+||++...+...+.|..|.+ .+.+|.....+... .+.++...+..+..+||||++||+||+
T Consensus 87 ~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g----~~~~wd~~~~~~~~----~g~~~~~~~~~~~~lpDLd~~np~Vr~ 158 (401)
T PLN02361 87 QYNVRAMADIVINHRVGTTQGHGGMYNRYDG----IPLPWDEHAVTSCT----GGLGNRSTGDNFNGVPNIDHTQHFVRK 158 (401)
T ss_pred HcCCEEEEEEccccccCCCCCCCCCcccCCC----CcCCCCcccccccc----CCCCCccCCCCCccCCccCCCCHHHHH
Confidence 9999999999999997654433333433332 12245433322211 122344556678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCC-CCCCCCCCCCchhhHHHHHHhcCC
Q 018278 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP-DGKPDANQDGHRGALKDWVQAAGG 260 (358)
Q Consensus 182 ~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 260 (358)
+++++++||++++||||||+|+|+|++.+||++++++.+|.|+|||.|.+..+.. ++..+|+++.+++.+..|+...++
T Consensus 159 ~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~ 238 (401)
T PLN02361 159 DIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGG 238 (401)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCC
Confidence 9999999888779999999999999999999999999889999999998744322 233567766677889999998878
Q ss_pred ceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeee
Q 018278 261 AVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPC 340 (358)
Q Consensus 261 ~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~ 340 (358)
..++|||++...++.++.++.+++.+.....++..+..|.++|+||+|||++|.++.+..+.++.++|+|++||+||+||
T Consensus 239 ~~~~fDF~l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~ 318 (401)
T PLN02361 239 LSAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPT 318 (401)
T ss_pred cceeecHHHHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCe
Confidence 88999999999999999777888888776666777888999999999999999999887777889999999999999999
Q ss_pred eecCccccC
Q 018278 341 IVISVTYPL 349 (358)
Q Consensus 341 IyyGdE~G~ 349 (358)
||||+-++.
T Consensus 319 Vyyg~~~~~ 327 (401)
T PLN02361 319 VFYDHFYDW 327 (401)
T ss_pred EeeccccCC
Confidence 999997653
|
|
| >PLN02784 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-65 Score=501.11 Aligned_cols=319 Identities=50% Similarity=1.001 Sum_probs=278.7
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~ 100 (358)
...+||+|.|+|+++.+ +..|++|+++|+||++||||+|||+|++++.+++||++.|||+++ ++|||.+||++||++|
T Consensus 500 ~~~eVmlQgF~Wds~~d-g~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~ 577 (894)
T PLN02784 500 SGFEILCQGFNWESHKS-GRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLN-SRYGTIDELKDLVKSF 577 (894)
T ss_pred CCceEEEEeEEcCcCCC-CchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccC-cCcCCHHHHHHHHHHH
Confidence 34589999999999988 456899999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 018278 101 RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (358)
Q Consensus 101 H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~ 180 (358)
|++||+||+|+|+||++..+....+.|..|.+ ..+|.....+.+...|. +.++..++..+..+||||++||+||
T Consensus 578 H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-----~~dW~d~~i~~ddp~F~-GrG~~~sgddf~~lPDLDh~npeVR 651 (894)
T PLN02784 578 HEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVR 651 (894)
T ss_pred HHCCCEEEEEECcccccccccCCCCcccccCC-----eecCCCCcccCCCcccC-CcCCcCcccccCcCCcCCCCCHHHH
Confidence 99999999999999998765433444444433 24565554444443443 4456667778899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCC
Q 018278 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG 260 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (358)
++|+++++||++++||||||+|+|+++..+|+++++++.+|.|+|||.|++..|. .+.++|+++.+++.+.+|+...++
T Consensus 652 ~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~-~g~~~Ynqd~~rq~l~dwi~~tgg 730 (894)
T PLN02784 652 KDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYT-YGEMDYNQDAHRQRIVDWINATNG 730 (894)
T ss_pred HHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccc-cCccccCchhHHHHHHHHHHhCCC
Confidence 9999999999988999999999999999999999999999999999999885543 467889999899999999998888
Q ss_pred ceeeeccchHHHHHHHHc-CchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCee
Q 018278 261 AVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTP 339 (358)
Q Consensus 261 ~~~~~df~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P 339 (358)
..++|||+++..+..++. ++.+++.+.....+++.+.+|.++|+||+|||+++.++.+.....+..+|||++||+||+|
T Consensus 731 ~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~P 810 (894)
T PLN02784 731 TAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTP 810 (894)
T ss_pred ceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCCcc
Confidence 899999999999999995 5788888877777888999999999999999999988766667778889999999999999
Q ss_pred eeecCcccc
Q 018278 340 CIVISVTYP 348 (358)
Q Consensus 340 ~IyyGdE~G 348 (358)
||||||.||
T Consensus 811 cVFy~h~y~ 819 (894)
T PLN02784 811 AVFYDHIFS 819 (894)
T ss_pred eEEehhhhh
Confidence 999999886
|
|
| >PRK09441 cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=470.87 Aligned_cols=310 Identities=30% Similarity=0.511 Sum_probs=228.1
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCCCccccC---------CCCCCCCCC
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLY---------DLDASKYGS 89 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---~~gY~~~d~~---------~id~~~~Gt 89 (358)
+++||+|+|+|+++.+ +.+|++|+++||||++||||+|||+||+++.+ +|||++.||| .|| |+|||
T Consensus 2 ~~~~~~q~f~w~~~~~-~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id-~~fGt 79 (479)
T PRK09441 2 RNGTMMQYFEWYLPND-GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVR-TKYGT 79 (479)
T ss_pred CCceEEEEEEeccCCC-ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcC-cCcCC
Confidence 5789999999999854 56788999999999999999999999999874 6999999999 799 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCC--CC-------------------cceeeccC-CCCCCC----CCCCC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKD--GR-------------------GIYCIFEG-GTSDDR----LDWGP 143 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~--~~-------------------~~~~~~~~-~~~~~~----~~~~~ 143 (358)
++||++||++||++||+||+|+|+||++..+.. .. ..|..|.. +...++ ..|..
T Consensus 80 ~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (479)
T PRK09441 80 KEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYH 159 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcC
Confidence 999999999999999999999999999964320 00 00111110 000000 01110
Q ss_pred CcccCCC-----------------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCC
Q 018278 144 SFICRGD-----------------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206 (358)
Q Consensus 144 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 206 (358)
.+... ..|..........+.+..+||||++||+|+++|++++++|++++||||||+|+|+|
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~ 237 (479)
T PRK09441 160 --FSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKH 237 (479)
T ss_pred --CCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcC
Confidence 00000 00100000011122445699999999999999999999999989999999999999
Q ss_pred CCHHHHHHHHHh---c-CC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-c
Q 018278 207 YAPSITKVYMEN---T-SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-E 280 (358)
Q Consensus 207 i~~~~~~~~~~~---~-~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~ 280 (358)
++.+||+++.++ . +| ++++||+|.+. .+.+..|+...+...++|||++...+..++.+ .
T Consensus 238 v~~~f~~~~~~~~~~~~~~~~~~vGE~~~~~---------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~ 302 (479)
T PRK09441 238 IDAWFIKEWIEHVREVAGKDLFIVGEYWSHD---------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGR 302 (479)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEeecCCC---------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCC
Confidence 999999999665 2 23 89999999641 35667788765456678999999888888753 2
Q ss_pred hhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcc-hHHHHHHHHHcCC-CeeeeecCccccCCCC
Q 018278 281 LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYILTHP-GTPCIVISVTYPLFHP 352 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~-~~~~a~a~l~~~p-G~P~IyyGdE~G~~~~ 352 (358)
...+.+.... ......+..+++|++|||++|+.+....... +.++|+++|||+| |+|+||||||+|+.+.
T Consensus 303 ~~~l~~~~~~--~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~ 374 (479)
T PRK09441 303 DYDMRNIFDG--TLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGY 374 (479)
T ss_pred ccchHhhhCc--chhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCC
Confidence 2233332211 1112346677999999999999887543222 3589999999999 9999999999998764
|
|
| >PRK10785 maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=480.64 Aligned_cols=302 Identities=21% Similarity=0.305 Sum_probs=215.3
Q ss_pred hhcCCCCCCceEEEeeecCCC----C-----C------------------------------CCCchHHHHhhhhhHHHc
Q 018278 15 AIFLPFTSPALLFQGFNWESS----N-----K------------------------------AGGWYNSLKNSIPDLSNA 55 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~~~~----~-----~------------------------------~~G~~~gl~~~L~yl~~L 55 (358)
...|.|.+++||||+|. |.+ + + .||||+||+++|||||+|
T Consensus 113 ~~~P~W~~~~v~YqIfp-DRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~L 191 (598)
T PRK10785 113 DQGPQWVADQVFYQIFP-DRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKL 191 (598)
T ss_pred CCCCchhhcCEEEEech-hhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHc
Confidence 56799999999999994 221 0 0 179999999999999999
Q ss_pred CCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCC--
Q 018278 56 GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG-- 133 (358)
Q Consensus 56 Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~-- 133 (358)
|||+|||+||++++++|||++.||++|| |+|||++||++||++||++|||||||+|+||+|.+|++... ...+
T Consensus 192 Gv~~I~L~Pif~s~s~hgYd~~Dy~~iD-p~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~----~~~~~~ 266 (598)
T PRK10785 192 GVTALYLNPIFTAPSVHKYDTEDYRHVD-PQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDR----HNRGTG 266 (598)
T ss_pred CCCEEEeCCcccCCCCCCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHH----hhcccc
Confidence 9999999999999999999999999999 99999999999999999999999999999999998862110 0000
Q ss_pred -----CCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHh-cCCCeEeecc
Q 018278 134 -----TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD----WMNWLKTE-IGFDGWRFDF 203 (358)
Q Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~----~~~~w~~~-~gvDGfR~D~ 203 (358)
..+++.+|.. +. ..+.+..+.....+||||++||+|+++|++ ++++|+++ +||||||+|+
T Consensus 267 ga~~~~~spy~dwf~---------~~-~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDv 336 (598)
T PRK10785 267 GACHHPDSPWRDWYS---------FS-DDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDV 336 (598)
T ss_pred ccccCCCCCcceeeE---------EC-CCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEec
Confidence 0112223321 11 112333445567899999999999999995 89999996 8999999999
Q ss_pred CCCCC--------HHHHHHH---HHhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeecc-chH
Q 018278 204 VKGYA--------PSITKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF-TTK 270 (358)
Q Consensus 204 a~~i~--------~~~~~~~---~~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df-~~~ 270 (358)
|++++ .+||+++ +++.+| ++++||+|.... +|+.+ +..+.++++ .+.
T Consensus 337 a~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~-------------------~~l~~-~~~d~~mny~~f~ 396 (598)
T PRK10785 337 VHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDAR-------------------QWLQA-DVEDAAMNYRGFA 396 (598)
T ss_pred HhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChh-------------------hhccC-ccccccccchhhh
Confidence 99884 5899988 455677 889999996521 11111 111222222 111
Q ss_pred HHHHHHHcC----------chhhhhhcCCCC-CCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCee
Q 018278 271 GILQAAVQG----------ELWRLKDSNGKP-PGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTP 339 (358)
Q Consensus 271 ~~l~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P 339 (358)
..+...+.+ +...+...+... ...........++|++|||++|+.+.++.+.++.++|++++||+||+|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP 476 (598)
T PRK10785 397 FPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVP 476 (598)
T ss_pred hHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCc
Confidence 111111110 001110000000 000000011246899999999999988767778999999999999999
Q ss_pred eeecCccccCCCC
Q 018278 340 CIVISVTYPLFHP 352 (358)
Q Consensus 340 ~IyyGdE~G~~~~ 352 (358)
+||||||+|+.+.
T Consensus 477 ~IYYGdE~G~~g~ 489 (598)
T PRK10785 477 CIYYGDEVGLDGG 489 (598)
T ss_pred EEEeeeeccccCC
Confidence 9999999999764
|
|
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=461.20 Aligned_cols=312 Identities=18% Similarity=0.264 Sum_probs=227.5
Q ss_pred CCCCCceEEEeee---cCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHHHH
Q 018278 19 PFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLK 94 (358)
Q Consensus 19 ~~~~~~v~~q~F~---~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~~ 94 (358)
.|.+++||||+|. .|+.++++|||+||+++||||++||||+|||+||+++++ +|||++.||++|| |+|||++||+
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd-~~~Gt~~df~ 79 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAIL-PEFGTIDDFK 79 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccC-hhhCCHHHHH
Confidence 4899999999984 245556789999999999999999999999999999986 7999999999999 9999999999
Q ss_pred HHHHHHHHcCCEEEEEeecccccccCCC----------CCcceeeccCCCCCCCCCCCCCccc--CCCCccCCCCCCCCC
Q 018278 95 SLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFIC--RGDKEYSDGQGNDDT 162 (358)
Q Consensus 95 ~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 162 (358)
+||++||++||+||+|+|+||+|.+|+. +..+|+.+.+.... ..+....+.. ...+.+....+.++.
T Consensus 80 ~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~y~ 158 (539)
T TIGR02456 80 DFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEK-YKDTRIIFVDTEKSNWTFDPVAKQYYW 158 (539)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcc-cccccccccccCCCCccccCCcCeeEE
Confidence 9999999999999999999999998852 22355555432111 0000000000 001112222233444
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC-------------CHHHHHHHH---HhcCC-CeEE
Q 018278 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-------------APSITKVYM---ENTSP-DFAV 225 (358)
Q Consensus 163 ~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i-------------~~~~~~~~~---~~~~p-~~~~ 225 (358)
..+...+||||++||+||++|++++++|++ +||||||||+++++ ..+||+++. ++.+| ++++
T Consensus 159 ~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~i 237 (539)
T TIGR02456 159 HRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLL 237 (539)
T ss_pred ecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEE
Confidence 556789999999999999999999999998 99999999999987 257998884 44566 8899
Q ss_pred EeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-C-CceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCce
Q 018278 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-G-GAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNA 302 (358)
Q Consensus 226 gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (358)
||++.. .+.+.+|++.. + +.+.+|+|++...+...+ .++...+...+....... .+...
T Consensus 238 aE~~~~----------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~~--~~~~~ 299 (539)
T TIGR02456 238 AEANQW----------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDIP--DSCQW 299 (539)
T ss_pred EEeCCC----------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhcc--CCCce
Confidence 998532 34556776431 2 578899999876554433 233222322211111111 22345
Q ss_pred eecccCCCCC-------------------------------cCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCC
Q 018278 303 VTFIDNHDTG-------------------------------STQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFH 351 (358)
Q Consensus 303 v~f~~nHD~~-------------------------------r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~ 351 (358)
++|++|||+. |+.++.+....+.++|++++||+||+|+||||||+||.+
T Consensus 300 ~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~ 379 (539)
T TIGR02456 300 CIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGD 379 (539)
T ss_pred eeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcC
Confidence 6799999984 344444434557899999999999999999999999974
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530). |
| >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-59 Score=456.15 Aligned_cols=312 Identities=20% Similarity=0.296 Sum_probs=229.4
Q ss_pred CCCCceEEEeee---cCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHHHHH
Q 018278 20 FTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 20 ~~~~~v~~q~F~---~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
|+++.||||+|. -++++++.|||+||+++|+||++|||++|||+||+++++ .+||++.||++|| |+|||.+||++
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~ 79 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAIN-PLFGTMADFEE 79 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccC-cccCCHHHHHH
Confidence 889999999984 155667789999999999999999999999999999986 4799999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEEeecccccccCCC---------CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC
Q 018278 96 LIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~V~NH~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (358)
||++||++||+||+|+|+||+|.+|++ +..+|+.|.+.....+.+|...+. ...+.+....++++...+.
T Consensus 80 lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~y~~~f~ 158 (543)
T TIGR02403 80 LVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFG-GSAWEYFGDTGQYYLHLFD 158 (543)
T ss_pred HHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCC-CcCccccCCCCceEEeccC
Confidence 999999999999999999999998852 234566666533223344533221 1122333345566677788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-----------------------HHHHHHHHHhc--CC
Q 018278 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----------------------PSITKVYMENT--SP 221 (358)
Q Consensus 167 ~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----------------------~~~~~~~~~~~--~p 221 (358)
..+||||++||+|+++|++++++|++ .||||||||+|+++. .+||+++.+.. +|
T Consensus 159 ~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 237 (543)
T TIGR02403 159 KTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDN 237 (543)
T ss_pred CcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccC
Confidence 89999999999999999999999998 899999999999985 35888874432 44
Q ss_pred -CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh-cCCceeeeccchHHHHHHHHcC--------chhhhhhcCCCC
Q 018278 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAVQG--------ELWRLKDSNGKP 291 (358)
Q Consensus 222 -~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~l~~~~~~--------~~~~~~~~~~~~ 291 (358)
+|+|||+|... .+.+.+|... ...++.+|+|... ......+ +...+.......
T Consensus 238 ~~~lvgE~~~~~---------------~~~~~~y~~~~~~~~d~~~nf~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (543)
T TIGR02403 238 DSVTVGEMSSTT---------------IENCIRYSNPENKELSMVFTFHHL--KVDYPNGEKWTLAKFDFAKLKEIFSTW 300 (543)
T ss_pred CeEEEEEeCCCC---------------HHHHHhhhCCCCCeeCeEEChhhh--hchhccccccccCCCCHHHHHHHHHHH
Confidence 89999998541 3445555532 2346677777531 1111111 111221111000
Q ss_pred -CCccCCCCCceeecccCCCCCcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 292 -PGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 292 -~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
..... .....++|++|||++|..++++... .+.++|+++++|+||+|+||||||+||.+.
T Consensus 301 ~~~~~~-~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~ 365 (543)
T TIGR02403 301 QTGMQA-GGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNP 365 (543)
T ss_pred HHhccc-cCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCC
Confidence 00100 1123357999999999999887332 246788899999999999999999999975
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. |
| >PRK09505 malS alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=459.27 Aligned_cols=308 Identities=20% Similarity=0.255 Sum_probs=216.9
Q ss_pred hhcCCCCCCceEEEeeecCCCC--------------C--------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCC----
Q 018278 15 AIFLPFTSPALLFQGFNWESSN--------------K--------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQS---- 68 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~~~~~--------------~--------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~---- 68 (358)
...|.|++++||||+|. |.+. + .||||+||+++|+||++||||+|||+||+++
T Consensus 181 ~~~~~~W~~aviYqI~~-DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~ 259 (683)
T PRK09505 181 AAAPFDWHNATVYFVLT-DRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGW 259 (683)
T ss_pred CCCChhhccCcEEEEeh-hhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccccccccc
Confidence 45677889999999984 3321 1 1699999999999999999999999999986
Q ss_pred -----------CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCC-C--------------
Q 018278 69 -----------VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK-D-------------- 122 (358)
Q Consensus 69 -----------~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~-~-------------- 122 (358)
.++|||++.||+.|| ++|||++||++||++||++||+||+|+|+||++..+. +
T Consensus 260 ~~~g~~g~~~~~~yhgY~~~D~~~id-~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~ 338 (683)
T PRK09505 260 VGGGTKGDFPHYAYHGYYTLDWTKLD-ANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGD 338 (683)
T ss_pred cccccccCCCcCCCCCCCccccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcc
Confidence 267999999999999 9999999999999999999999999999999995421 0
Q ss_pred -----CCcceeeccCCCCCCCCCCCCCcc---cCCCCccCCC---------C------CCCCCCCCCCCCCCCCCC----
Q 018278 123 -----GRGIYCIFEGGTSDDRLDWGPSFI---CRGDKEYSDG---------Q------GNDDTGEDFQPAPDIDHL---- 175 (358)
Q Consensus 123 -----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---------~------~~~~~~~~~~~~~dln~~---- 175 (358)
....|..|.+.. ...|++... ..+...|..+ . +.....+....+||||++
T Consensus 339 ~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~ 415 (683)
T PRK09505 339 ENKKTLGERWSDWQPAA---GQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQA 415 (683)
T ss_pred ccccccCcccccccccc---cccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccc
Confidence 011121111100 111211100 0000111100 0 001112234567888776
Q ss_pred -------------------CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHh----------c-------
Q 018278 176 -------------------NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMEN----------T------- 219 (358)
Q Consensus 176 -------------------n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~----------~------- 219 (358)
||+||++|++++++|++++||||||+|+|+|++.+||+++..+ .
T Consensus 416 ~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~ 495 (683)
T PRK09505 416 SGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALD 495 (683)
T ss_pred cccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4599999999999999989999999999999999999988332 1
Q ss_pred -CCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC--chhhhhhcCCCCCCccC
Q 018278 220 -SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG--ELWRLKDSNGKPPGFIG 296 (358)
Q Consensus 220 -~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~ 296 (358)
.+++++||+|.... ....|.. .++++++||++...+..++.. .+........ ...
T Consensus 496 ~~~~~~vGEvw~~~~----------------~~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~---~~~- 553 (683)
T PRK09505 496 DAPFWMTGEAWGHGV----------------MKSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA---EKL- 553 (683)
T ss_pred cCCeEEEEEecCCch----------------hhHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh---hhc-
Confidence 13789999996411 1134443 468889999988665544321 1211111110 000
Q ss_pred CCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCC
Q 018278 297 ILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFH 351 (358)
Q Consensus 297 ~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~ 351 (358)
.....++|++|||++|+.+.... ..+.++|++++||+||+|+||||||+|+.+
T Consensus 554 -~~~~~l~FLdNHDt~Rf~s~~~~-~~~~klAaall~tlpGiP~IYYGdEiGm~g 606 (683)
T PRK09505 554 -QDFNVLSYLSSHDTRLFFEGGQS-YAKQRRAAELLLLAPGAVQIYYGDESARPF 606 (683)
T ss_pred -CccceeecccCCChhhhhhhcCc-hHHHHHHHHHHHhCCCCcEEEechhhCccC
Confidence 12345789999999999887763 367899999999999999999999999864
|
|
| >PRK10933 trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=453.72 Aligned_cols=315 Identities=17% Similarity=0.236 Sum_probs=229.8
Q ss_pred hcCCCCCCceEEEeee---cCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHH
Q 018278 16 IFLPFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~---~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~ 91 (358)
..|.|++++||||+|. -+++++++|||+||+++|+||++||||+|||+||++++. +|||++.||++|| |+|||++
T Consensus 3 ~~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id-~~~Gt~~ 81 (551)
T PRK10933 3 NLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAID-PTYGTLD 81 (551)
T ss_pred CcchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcC-cccCCHH
Confidence 3588999999999985 244566789999999999999999999999999999876 6899999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCC---------CCcceeeccCCCCC-CCCCCCCCcccCCCCccCCCCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDD 161 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (358)
||++||++||++||+||+|+|+||+|.+|++ +..+|+.|.++.+. .+..|...+ ....+.|....+.+.
T Consensus 82 d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~y 160 (551)
T PRK10933 82 DFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKF-GGSAWRWHAESEQYY 160 (551)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccC-CCccccccCCCCceE
Confidence 9999999999999999999999999998863 34567666654321 233443322 122344555555666
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH-----------------------HHHHHHHHh
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------------------SITKVYMEN 218 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------------------~~~~~~~~~ 218 (358)
...+...+||||++||+||++|++++++|++ +||||||+|+|+++.. +||+++.+.
T Consensus 161 ~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (551)
T PRK10933 161 LHLFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRD 239 (551)
T ss_pred eecccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHH
Confidence 6777889999999999999999999999997 9999999999999863 567776443
Q ss_pred c-C--CCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-CCceeeeccchHHHHHHHHcCc--------hhhhhh
Q 018278 219 T-S--PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQAAVQGE--------LWRLKD 286 (358)
Q Consensus 219 ~-~--p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~l~~~~~~~--------~~~~~~ 286 (358)
. + .++++||+|... .+.+..|.... ..+...|+|.. .......+. ...+..
T Consensus 240 ~~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~fnf~~--~~~~~~~~~~~~~~~~~~~~~~~ 302 (551)
T PRK10933 240 VFTPRGLMTVGEMSSTS---------------LEHCQRYAALTGSELSMTFNFHH--LKVDYPNGEKWTLAKPDFVALKT 302 (551)
T ss_pred hhcccCcEEEEeecCCC---------------HHHHHHhhcccCCeeeeEecHHH--hhhhhccCCcccccccCHHHHHH
Confidence 2 2 268999998531 34555664322 33556676642 221111111 111111
Q ss_pred cCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcc----hHHHHHHHHHcCCCeeeeecCccccCCC
Q 018278 287 SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD----KVMLGYAYILTHPGTPCIVISVTYPLFH 351 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~----~~~~a~a~l~~~pG~P~IyyGdE~G~~~ 351 (358)
.......... .......|++|||++|..++++.+.. .++++.+++||+||+|+||||||+||.+
T Consensus 303 ~~~~~~~~~~-~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~ 370 (551)
T PRK10933 303 LFRHWQQGMH-NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTN 370 (551)
T ss_pred HHHHHHHhhc-ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCC
Confidence 1100000000 01223579999999999999874322 3567778899999999999999999998
|
|
| >PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=434.33 Aligned_cols=292 Identities=24% Similarity=0.410 Sum_probs=210.3
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
|||+||++||||||+|||++|||+||++++ ++|||+|.||++|| |+|||++||++||++||++||+||+|+|+||++.
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVD-PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEES-TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccc-cccchhhhhhhhhhccccccceEEEeeecccccc
Confidence 899999999999999999999999999997 79999999999999 9999999999999999999999999999999999
Q ss_pred cCCC----------CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018278 119 ERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (358)
Q Consensus 119 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~ 188 (358)
+|+. +..+|+.|.+.....+..|... .....|... .......++..++|||++||+||++|+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSY---FGGSNWEYD-DWGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCS---TTTSSEESC-HHTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceeecccccccccccccc---ccccccccc-ccccccccccccchhhhhhhhhhhhhccccc
Confidence 9862 1234444433212222222210 011111100 0000046788999999999999999999999
Q ss_pred HHHHhcCCCeEeeccCCCCCHHHHHHHHHhc---CC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh-cCCcee
Q 018278 189 WLKTEIGFDGWRFDFVKGYAPSITKVYMENT---SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVA 263 (358)
Q Consensus 189 ~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~---~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 263 (358)
+|++ +||||||+|+|++++.++|+++.++. .| .+++||.+... ...+..+... ......
T Consensus 156 ~w~~-~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~---------------~~~~~~~~~~~~~~~~~ 219 (316)
T PF00128_consen 156 FWIE-EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGD---------------NEDLRQYAYDGYFDLDS 219 (316)
T ss_dssp HHHH-TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSS---------------HHHHHHHHHHGTTSHSE
T ss_pred chhh-ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCC---------------ccccchhhhccccccch
Confidence 9998 78999999999999999999995543 25 88999999651 2223333222 222333
Q ss_pred eeccchHHHHHHHH----cCc--hhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCC
Q 018278 264 AFDFTTKGILQAAV----QGE--LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPG 337 (358)
Q Consensus 264 ~~df~~~~~l~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG 337 (358)
.+++.......... .++ ...+.......... ...+...++|++|||+.|..+.++....++++|++++||+||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG 298 (316)
T PF00128_consen 220 VFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSS-YPDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPG 298 (316)
T ss_dssp EEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHH-STTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSS
T ss_pred hhcccccccccchhhhhccccchhhhhhhhhhhhhhh-hcccceeeecccccccccchhhhcccchHHHHHHHHHHcCCC
Confidence 56665554444333 111 12221111100000 111457799999999999988887444489999999999999
Q ss_pred eeeeecCccccCCCCC
Q 018278 338 TPCIVISVTYPLFHPL 353 (358)
Q Consensus 338 ~P~IyyGdE~G~~~~~ 353 (358)
+|+||||||+|+.+..
T Consensus 299 ~P~iy~G~E~g~~~~~ 314 (316)
T PF00128_consen 299 IPMIYYGDEIGMTGSK 314 (316)
T ss_dssp EEEEETTGGGTBBTSS
T ss_pred ccEEEeChhccCCCCC
Confidence 9999999999998764
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A .... |
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=404.96 Aligned_cols=296 Identities=23% Similarity=0.308 Sum_probs=199.7
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
++.|||++...+.. + .|||+||+++|+|||+||||+||||||++++ .+|||++.||++|+ ++|||.+|||+||++
T Consensus 92 ~~~viYE~hv~~f~-~-~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G~~~e~k~lV~~ 168 (542)
T TIGR02402 92 EEAVIYELHVGTFT-P-EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYGGPDDLKALVDA 168 (542)
T ss_pred cccEEEEEEhhhcC-C-CCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc-cccCCHHHHHHHHHH
Confidence 56799999864333 2 6999999999999999999999999998876 47999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCH--
Q 018278 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP-- 177 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~-- 177 (358)
||++||+||||+|+||++.++. |.. . ..+ |... .....| .+++|+++|
T Consensus 169 aH~~Gi~VilD~V~NH~~~~~~-----~~~--~---~~~--y~~~---~~~~~w---------------g~~~n~~~~~~ 218 (542)
T TIGR02402 169 AHGLGLGVILDVVYNHFGPEGN-----YLP--R---YAP--YFTD---RYSTPW---------------GAAINFDGPGS 218 (542)
T ss_pred HHHCCCEEEEEEccCCCCCccc-----ccc--c---cCc--cccC---CCCCCC---------------CCccccCCCcH
Confidence 9999999999999999987643 110 0 000 1100 000111 135999999
Q ss_pred -HHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH----HHHHHH---HHhcCC----CeEEEeccCCCC-CCC-------C
Q 018278 178 -RVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITKVY---MENTSP----DFAVGEKWDSLS-YGP-------D 237 (358)
Q Consensus 178 -~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~----~~~~~~---~~~~~p----~~~~gE~~~~~~-~~~-------~ 237 (358)
+||++|++++++|++++||||||+|++.++.. +||+++ +++.+| ++++||.+...+ ... .
T Consensus 219 ~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~ 298 (542)
T TIGR02402 219 DEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYG 298 (542)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccc
Confidence 99999999999999999999999999998853 488776 444443 689999985421 110 0
Q ss_pred CCCCCCCCCchhhHHHHHHhcCC-ceeeeccc---hHHHHHHHH--cCchhhhhh-cCCCCCCccCCCCCceeecccCCC
Q 018278 238 GKPDANQDGHRGALKDWVQAAGG-AVAAFDFT---TKGILQAAV--QGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHD 310 (358)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~df~---~~~~l~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~v~f~~nHD 310 (358)
-+..|++ .++..+..++.+... ....+.-+ +...+...+ .+....... ..+.+.. ...+.+.++|++|||
T Consensus 299 ~d~~~~~-~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~vnfl~nHD 375 (542)
T TIGR02402 299 LDAQWND-DFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSG--DLPPHRFVVFIQNHD 375 (542)
T ss_pred eEEEECc-hHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCC--CCCHHHEEEEccCcc
Confidence 0123332 234444444432110 00000001 111111110 010000000 0000000 013467899999999
Q ss_pred C-------CcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 311 T-------GSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 311 ~-------~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
+ .|+..... .++.++|.+++||+||+||||||||+|+++++..
T Consensus 376 ~~gn~~~~~Rl~~~~~--~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~f 425 (542)
T TIGR02402 376 QIGNRALGERLSQLLS--PGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQF 425 (542)
T ss_pred cccccchhhhhhhcCC--HHHHHHHHHHHHHcCCCceeeccHhhcCCCCCcc
Confidence 7 57766553 4788999999999999999999999999998643
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. |
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=400.60 Aligned_cols=298 Identities=21% Similarity=0.310 Sum_probs=200.6
Q ss_pred CCceEEEeeecCCC-------CCCCCchHHHHhh--hhhHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCC
Q 018278 22 SPALLFQGFNWESS-------NKAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (358)
Q Consensus 22 ~~~v~~q~F~~~~~-------~~~~G~~~gl~~~--L~yl~~LGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (358)
++.|||++...+.. .+..|||+||+++ |+|||+||||+||||||+++. .+|||++.|||+
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 45799999753221 2346999999985 999999999999999999874 369999999999
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCC
Q 018278 82 LDASKY---GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158 (358)
Q Consensus 82 id~~~~---Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (358)
|+ ++| |+.+|||+||++||++||+||||+|+||++..+... ....|++... ..|.... . +..+
T Consensus 234 ~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~--~~~~~~~~d~---~~yy~~~--~------~~~~ 299 (688)
T TIGR02100 234 PE-PRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELG--PTLSFRGIDN---ASYYRLQ--P------DDKR 299 (688)
T ss_pred cC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCC--CcccccCCCC---CcceEec--C------CCCc
Confidence 99 999 679999999999999999999999999999875311 1111221100 0111000 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH---------HHHHHHHHh-cCC-CeEEEe
Q 018278 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---------SITKVYMEN-TSP-DFAVGE 227 (358)
Q Consensus 159 ~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~---------~~~~~~~~~-~~p-~~~~gE 227 (358)
.+. ......++||+++|+||++|++++++|++++||||||+|++..++. ++++++.+. ..| ++++||
T Consensus 300 ~~~--~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE 377 (688)
T TIGR02100 300 YYI--NDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAE 377 (688)
T ss_pred eec--CCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEe
Confidence 010 1112235699999999999999999999989999999999998864 577776553 345 789999
Q ss_pred ccCCCC--CCCC----CCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCc
Q 018278 228 KWDSLS--YGPD----GKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQN 301 (358)
Q Consensus 228 ~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (358)
.|.... +..+ ....|| +.+++.+++|+.+..+. ...+...+.+..... . .....|.+
T Consensus 378 ~W~~~~~~~~~~~~~~~~~~~N-d~frd~ir~f~~g~~~~--------~~~~~~~l~gs~~~~-------~-~~~~~~~~ 440 (688)
T TIGR02100 378 PWDIGPGGYQVGNFPPGWAEWN-DRYRDDMRRFWRGDAGM--------IGELANRLTGSSDLF-------E-HNGRRPWA 440 (688)
T ss_pred eecCCCCcccccCCCCceEEec-HHHHHHHHHHHcCCCCc--------HHHHHHHHhCCHhhc-------c-ccCCCcCE
Confidence 997632 2111 112344 34455555555432211 111222222211000 0 01124678
Q ss_pred eeecccCCCCCcCcCCCCC--------------------------------------CcchHHHHHHHHHcCCCeeeeec
Q 018278 302 AVTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTPCIVI 343 (358)
Q Consensus 302 ~v~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~l~~~pG~P~Iyy 343 (358)
+|||+++||+.++..++.+ ..++.|+|++++|++||+|||||
T Consensus 441 ~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~ 520 (688)
T TIGR02100 441 SINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLA 520 (688)
T ss_pred EEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeee
Confidence 8999999999664332110 02367899999999999999999
Q ss_pred CccccCCCC
Q 018278 344 SVTYPLFHP 352 (358)
Q Consensus 344 GdE~G~~~~ 352 (358)
|||+|+++.
T Consensus 521 GdE~g~t~~ 529 (688)
T TIGR02100 521 GDEFGRTQQ 529 (688)
T ss_pred cHhhccCCC
Confidence 999999854
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. |
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=398.72 Aligned_cols=297 Identities=21% Similarity=0.278 Sum_probs=200.8
Q ss_pred ceEEEeeecCCC---CC---CCCchHHHHhh-----------hhhHHHcCCCEEEeCCCCCCCC----------CCCCCc
Q 018278 24 ALLFQGFNWESS---NK---AGGWYNSLKNS-----------IPDLSNAGITHVWLPPPSQSVA----------PQGYMP 76 (358)
Q Consensus 24 ~v~~q~F~~~~~---~~---~~G~~~gl~~~-----------L~yl~~LGv~~I~l~Pi~~~~~----------~~gY~~ 76 (358)
.|||+....+.. .. ..|+|.|++++ |+|||+||||+||||||+++.+ +|||++
T Consensus 128 ~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~ 207 (605)
T TIGR02104 128 AIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDP 207 (605)
T ss_pred cEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCC
Confidence 589988753322 11 25888888765 9999999999999999998753 499999
Q ss_pred cccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccC
Q 018278 77 GRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR 148 (358)
Q Consensus 77 ~d~~~id~~~~Gt--------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (358)
.|||+|+ ++||+ .+|||+||++||++||+||||+|+||++..... .|.+..+. |. ..
T Consensus 208 ~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~------~f~~~~~~----~~----~~ 272 (605)
T TIGR02104 208 LNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREES------PFEKTVPG----YY----YR 272 (605)
T ss_pred ccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCC------cccCCCCC----ee----EE
Confidence 9999999 99987 599999999999999999999999999853110 12221111 10 00
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC-CeE
Q 018278 149 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFA 224 (358)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p-~~~ 224 (358)
.+..+.+..+..+ ..++|+++|+||++|++++++|++++||||||+|++++++.+||+++. ++.+| +++
T Consensus 273 -----~~~~g~~~~~~g~--~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 273 -----YNEDGTLSNGTGV--GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILL 345 (605)
T ss_pred -----ECCCCCccCCCcc--cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEE
Confidence 0000011101111 136999999999999999999999999999999999999999999884 45566 889
Q ss_pred EEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh-cCCceeeeccchHHHHHHHH---------cCc---hhhhhhcCCCC
Q 018278 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAV---------QGE---LWRLKDSNGKP 291 (358)
Q Consensus 225 ~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~l~~~~---------~~~---~~~~~~~~~~~ 291 (358)
+||.|...+... .......... .-.....+++.++..++... .+. ...+...+...
T Consensus 346 igE~w~~~~~~~-----------~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~ 414 (605)
T TIGR02104 346 YGEGWDLGTPLP-----------PEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGS 414 (605)
T ss_pred EEccCCCCCCcc-----------hhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCC
Confidence 999997532100 0000000000 00123457777777665221 111 11222211100
Q ss_pred C-----CccCCCCCceeecccCCCCCcCcCCCCC---------CcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 292 P-----GFIGILPQNAVTFIDNHDTGSTQRLWPF---------PSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 292 ~-----~~~~~~~~~~v~f~~nHD~~r~~~~~~~---------~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
. ......|...|+|++|||+.|+..++.. ..++.++|++++||+||+||||||||+|+++..
T Consensus 415 ~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g 490 (605)
T TIGR02104 415 IELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQG 490 (605)
T ss_pred hhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCC
Confidence 0 0112356789999999999887544321 134789999999999999999999999998644
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. |
| >PRK13840 sucrose phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=369.90 Aligned_cols=295 Identities=17% Similarity=0.125 Sum_probs=219.8
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhh-hHHHcCCCEEEeCCCC-CCC-CCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPS-QSV-APQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~-yl~~LGv~~I~l~Pi~-~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~ 98 (358)
+|+|++..|. |+.++ |||+||+++|| ||++| |++|||+|++ +++ +++||+|.||+.|| |+|||++||++|++
T Consensus 2 ~n~~~litY~-Ds~~~--GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VD-P~fGt~eDf~~L~~ 76 (495)
T PRK13840 2 KNKVQLITYA-DRLGD--GGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVD-PRLGDWDDVKALGK 76 (495)
T ss_pred CCceEEEEec-cCCCC--CCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcC-cccCCHHHHHHHHh
Confidence 7899999997 99974 89999999999 59999 9999999999 444 47999999999999 99999999999985
Q ss_pred HHHHcCCEEEEEeecccccccCCC-----------CCcceeeccCC-CC--CCCCCCCCCcccCCC-----CccCCCCCC
Q 018278 99 AFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGG-TS--DDRLDWGPSFICRGD-----KEYSDGQGN 159 (358)
Q Consensus 99 ~~H~~Gi~VilD~V~NH~~~~~~~-----------~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~-----~~~~~~~~~ 159 (358)
||+||+|+|+||+|.+|++ +..+|+.+.+. .+ .++.+|...+..... +.+.++...
T Consensus 77 -----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~ 151 (495)
T PRK13840 77 -----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTR 151 (495)
T ss_pred -----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCce
Confidence 9999999999999999862 34566665431 11 123344332221111 123445556
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH-------------HHHHHHHHhcC--CCeE
Q 018278 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-------------SITKVYMENTS--PDFA 224 (358)
Q Consensus 160 ~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-------------~~~~~~~~~~~--p~~~ 224 (358)
+.+..|...|||||+.||+|++++.+++++|++ .||||||+||+.++.+ +||+++....+ ...+
T Consensus 152 ~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~l 230 (495)
T PRK13840 152 LVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEV 230 (495)
T ss_pred EEeccCCcccceeCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEE
Confidence 677788899999999999999999999999998 8999999999976532 46766633222 3568
Q ss_pred EEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCcee
Q 018278 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAV 303 (358)
Q Consensus 225 ~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 303 (358)
++|++.... . .....++...+|||++...+..++ .++...+..++... |...+
T Consensus 231 l~Ei~~y~~--------------~-----~~~~~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~~-------p~~~~ 284 (495)
T PRK13840 231 LVEIHSYYK--------------T-----QIEIAKKVDRVYDFALPPLILHTLFTGDVEALAHWLEIR-------PRNAV 284 (495)
T ss_pred EEeCccccC--------------c-----cccccccccEEecchhhHHHHHHHHhCCchHHHHHHHhC-------CCccE
Confidence 899875310 0 000123578899999998887766 66666666665432 44457
Q ss_pred ecccCCCCCcC----------cCCC--------------------------------------------CCCcchHHHHH
Q 018278 304 TFIDNHDTGST----------QRLW--------------------------------------------PFPSDKVMLGY 329 (358)
Q Consensus 304 ~f~~nHD~~r~----------~~~~--------------------------------------------~~~~~~~~~a~ 329 (358)
+|+.|||.-.+ ..++ +.+.+|..+|.
T Consensus 285 n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ 364 (495)
T PRK13840 285 TVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAAR 364 (495)
T ss_pred EeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHH
Confidence 99999998544 1100 11234788999
Q ss_pred HHHHcCCCeeeeecCccccCCCCC
Q 018278 330 AYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 330 a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
+++|++||||.||||+|+|..+..
T Consensus 365 ai~~~~~GiP~iY~~~ll~~~ND~ 388 (495)
T PRK13840 365 AIQFFAPGIPQVYYVGLLAGPNDM 388 (495)
T ss_pred HHHHcCCCcceeeechhhccCccH
Confidence 999999999999999999986643
|
|
| >PRK03705 glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=387.39 Aligned_cols=297 Identities=19% Similarity=0.229 Sum_probs=197.1
Q ss_pred CCceEEEeeecCCC-------CCCCCchHHHHh--hhhhHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCC
Q 018278 22 SPALLFQGFNWESS-------NKAGGWYNSLKN--SIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (358)
Q Consensus 22 ~~~v~~q~F~~~~~-------~~~~G~~~gl~~--~L~yl~~LGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (358)
++.|||++...+.. .+..|+|+|+++ +|+|||+||||+||||||+++. .+|||++.|||+
T Consensus 149 ~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa 228 (658)
T PRK03705 149 GSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFA 228 (658)
T ss_pred cccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccc
Confidence 45799998743322 233699999997 4999999999999999999863 469999999999
Q ss_pred CCCCCCCCH-----HHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCC
Q 018278 82 LDASKYGSQ-----ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDG 156 (358)
Q Consensus 82 id~~~~Gt~-----~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (358)
|+ ++|||. +|||+||++||++||+||||+|+||++..+. ...+..+.+..... .-|. +.
T Consensus 229 ~d-~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~d~~~-yy~~------------~~ 292 (658)
T PRK03705 229 LD-PAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDL--DGPTLSLRGIDNRS-YYWI------------RE 292 (658)
T ss_pred cc-cccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCC--CCcchhcccCCCcc-ceEE------------CC
Confidence 99 999994 7999999999999999999999999986432 11121222111000 0010 01
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH--HHH------HHHHH-hcCC-CeEEE
Q 018278 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--SIT------KVYME-NTSP-DFAVG 226 (358)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--~~~------~~~~~-~~~p-~~~~g 226 (358)
.+.+..+ ....++||++||+||++|++++++|++++||||||+|+|.++.+ +|+ +++.. ...+ ++++|
T Consensus 293 ~g~~~~~--~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~lig 370 (658)
T PRK03705 293 DGDYHNW--TGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIA 370 (658)
T ss_pred CCCcCCC--CCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEE
Confidence 1111111 12235799999999999999999999999999999999999863 243 33322 1233 78999
Q ss_pred eccCCCC--CCCC----CCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCC
Q 018278 227 EKWDSLS--YGPD----GKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 300 (358)
Q Consensus 227 E~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (358)
|.|..+. +..+ +...|| +.+++.+++++...... .. .+...+.+.... . . .....|.
T Consensus 371 E~Wd~~~~~~~~g~~~~~~~~~N-d~fRd~ir~f~~~~~~~-------~~-~~~~~l~gs~~~-~------~-~~~~~p~ 433 (658)
T PRK03705 371 EPWDIGPGGYQVGNFPPPFAEWN-DHFRDAARRFWLHGDLP-------LG-EFAGRFAASSDV-F------K-RNGRLPS 433 (658)
T ss_pred ecccCCCChhhhcCCCcceEEEc-hHHHHHHHHHHccCCCc-------HH-HHHHHHhcchhh-c------c-ccCCCCC
Confidence 9997632 2211 122455 44566666665432211 00 111111221100 0 0 1123578
Q ss_pred ceeecccCCCCCcCcCCCCC--------------------------------------CcchHHHHHHHHHcCCCeeeee
Q 018278 301 NAVTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTPCIV 342 (358)
Q Consensus 301 ~~v~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~l~~~pG~P~Iy 342 (358)
++||||++||+.++..++.+ ..++.|+|+++||+++|+||||
T Consensus 434 ~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~ 513 (658)
T PRK03705 434 ASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLL 513 (658)
T ss_pred eEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 89999999998554332110 1135688999999999999999
Q ss_pred cCccccCCCCC
Q 018278 343 ISVTYPLFHPL 353 (358)
Q Consensus 343 yGdE~G~~~~~ 353 (358)
+|||+|+++..
T Consensus 514 ~GdE~grtq~G 524 (658)
T PRK03705 514 AGDEHGHSQHG 524 (658)
T ss_pred hhHHhccCCCC
Confidence 99999998444
|
|
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=387.02 Aligned_cols=291 Identities=18% Similarity=0.201 Sum_probs=192.9
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
..+||+.-. .+..+ .|+|++|+++| +|||+||||+||||||++++ .+|||+++|||+|+ ++|||.+|||+||++
T Consensus 138 ~~~iYe~hv-~~~~~-~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~Gt~~dlk~lV~~ 214 (613)
T TIGR01515 138 PVSIYELHL-GSWRH-GLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT-SRFGTPDDFMYFVDA 214 (613)
T ss_pred CceEEEEeh-hhccC-CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccc-cccCCHHHHHHHHHH
Confidence 357888875 33333 49999999996 99999999999999999986 47999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 018278 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v 179 (358)
||++||+||||+|+||++.++.. +..|.+. + .|.. . +..... ...+ +.+++|++||+|
T Consensus 215 ~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~-~----~y~~----~------~~~~~~--~~~w-~~~~~~~~~~~V 272 (613)
T TIGR01515 215 CHQAGIGVILDWVPGHFPKDDHG----LAEFDGT-P----LYEH----K------DPRDGE--HWDW-GTLIFDYGRPEV 272 (613)
T ss_pred HHHCCCEEEEEecccCcCCccch----hhccCCC-c----ceec----c------CCccCc--CCCC-CCceecCCCHHH
Confidence 99999999999999999976421 1112110 0 0000 0 000000 0111 346799999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeeccCCCCC------------------------HHHHHHH---HHhcCC-CeEEEeccCC
Q 018278 180 QKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------------PSITKVY---MENTSP-DFAVGEKWDS 231 (358)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a~~i~------------------------~~~~~~~---~~~~~p-~~~~gE~~~~ 231 (358)
|++|++++++|+++|||||||+|+++++. .+||+++ +++.+| +++|||.+..
T Consensus 273 r~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~ 352 (613)
T TIGR01515 273 RNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTE 352 (613)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 99999999999999999999999986542 4799887 555667 8999998743
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhhhcCCCCCCccCCCCCceeecccCCC
Q 018278 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 310 (358)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD 310 (358)
.. . .......+.-+++..+++.++..+...+.. ...+.................+ ..+++|||
T Consensus 353 ~~-------~--------~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~sHD 416 (613)
T TIGR01515 353 WP-------G--------VTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFSEN-FVLPLSHD 416 (613)
T ss_pred Cc-------c--------ccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhhhc-cccCCCCC
Confidence 11 0 011111111123334444444433333211 1101000000000000001111 23678999
Q ss_pred C-----CcCcCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 311 T-----GSTQRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 311 ~-----~r~~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
+ +|+....... .++.|++++++||+||+||||||+|+|+..+.+
T Consensus 417 ~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~ 469 (613)
T TIGR01515 417 EVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWN 469 (613)
T ss_pred CcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCC
Confidence 8 4444444432 257889999999999999999999999977643
|
A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. |
| >TIGR03852 sucrose_gtfA sucrose phosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=370.02 Aligned_cols=293 Identities=17% Similarity=0.188 Sum_probs=218.8
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~ 102 (358)
|+|++.+|. |+.+++.|||+|++++ ||++ ||++|||+|++++++++||+|.||+.|| |+|||++||++|+++
T Consensus 1 n~v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VD-P~~Gt~~Df~~L~~~--- 72 (470)
T TIGR03852 1 NKAMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVD-PAFGDWSDVEALSEK--- 72 (470)
T ss_pred CCceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeC-cccCCHHHHHHHHHh---
Confidence 578999997 9999988999999988 9999 7999999999999999999999999999 999999999999997
Q ss_pred cCCEEEEEeecccccccCC-----------CCCcceee-----ccCCCCCCCCCCCCCcccC-----CCCccCCCCCCCC
Q 018278 103 KGIKCLADMVINHRTAERK-----------DGRGIYCI-----FEGGTSDDRLDWGPSFICR-----GDKEYSDGQGNDD 161 (358)
Q Consensus 103 ~Gi~VilD~V~NH~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 161 (358)
|+||+|+|+||+|.+|+ .+..+|+. |.++.+ +..++...+... ....+.++...++
T Consensus 73 --~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~-~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
T TIGR03852 73 --YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRP-TQEDVDLIYKRKDRAPYQEVTFADGSTEKV 149 (470)
T ss_pred --hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCc-cccccccccCCCCCCCCCceEEcCCCCeEE
Confidence 89999999999999985 23445665 222111 001111111000 1123444555778
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-----------HH---HHHHHHH-hcCC-CeEE
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----------PS---ITKVYME-NTSP-DFAV 225 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----------~~---~~~~~~~-~~~p-~~~~ 225 (358)
+.+|...|||||+.||+|++++.+++++|++ .||||||+||+.++. ++ +++.+.+ ...| ++++
T Consensus 150 w~tF~~~QpDLN~~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll 228 (470)
T TIGR03852 150 WNTFGEEQIDLDVTSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEIL 228 (470)
T ss_pred EccCCccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEE
Confidence 8899999999999999999999999999997 999999999995442 33 4454433 2344 8899
Q ss_pred EeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCceee
Q 018278 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVT 304 (358)
Q Consensus 226 gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~ 304 (358)
+|++..-.+. +. ..+....+|+|++...+-.++ .++...+.+++... |...++
T Consensus 229 ~E~~~~~~~~------------------~~-~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~-------p~~~~n 282 (470)
T TIGR03852 229 PEIHEHYTIQ------------------FK-IAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKS-------PMKQFT 282 (470)
T ss_pred eHhhhhcccc------------------cc-cccceeEEccCccchhhHHHhhccCHHHHHHHHHhC-------cccceE
Confidence 9997431110 00 013567789999988777665 67777777776532 334479
Q ss_pred cccCCCCC--------------------------cCc---------------------CCCCCCcchHHHHHHHHHcCCC
Q 018278 305 FIDNHDTG--------------------------STQ---------------------RLWPFPSDKVMLGYAYILTHPG 337 (358)
Q Consensus 305 f~~nHD~~--------------------------r~~---------------------~~~~~~~~~~~~a~a~l~~~pG 337 (358)
|++|||.- +.. +.++.+.+|..+|.|++|++||
T Consensus 283 fL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpG 362 (470)
T TIGR03852 283 TLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPG 362 (470)
T ss_pred EeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCC
Confidence 99999980 111 0112245678899999999999
Q ss_pred eeeeecCccccCCCCC
Q 018278 338 TPCIVISVTYPLFHPL 353 (358)
Q Consensus 338 ~P~IyyGdE~G~~~~~ 353 (358)
||.||||+|+|+.+..
T Consensus 363 iP~iYy~~llg~~nD~ 378 (470)
T TIGR03852 363 IPQVYYVGLLAGKNDI 378 (470)
T ss_pred CceEEechhhcCCchH
Confidence 9999999999997654
|
In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. |
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=389.50 Aligned_cols=293 Identities=20% Similarity=0.255 Sum_probs=190.7
Q ss_pred CCceEEEeeecC---CCCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHH
Q 018278 22 SPALLFQGFNWE---SSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 22 ~~~v~~q~F~~~---~~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
+..+||++.... ...++.|||++|+++| +|||+||||+||||||++++ .+|||++.|||+|+ ++|||++|||+
T Consensus 146 ~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~-~~~Gt~~d~k~ 224 (633)
T PRK12313 146 RPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPT-SRYGTPEDFMY 224 (633)
T ss_pred CCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCC-CCCCCHHHHHH
Confidence 345899987522 2223359999999995 99999999999999999987 47999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 018278 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (358)
||++||++||+||||+|+||++.++.. ...|.+ .+. .. +.+....+. ..+ ..++||++
T Consensus 225 lv~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~-~~~--~~------------~~~~~~~~~--~~w-~~~~~n~~ 282 (633)
T PRK12313 225 LVDALHQNGIGVILDWVPGHFPKDDDG----LAYFDG-TPL--YE------------YQDPRRAEN--PDW-GALNFDLG 282 (633)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----ccccCC-Ccc--ee------------ecCCCCCcC--CCC-CCcccCCC
Confidence 999999999999999999999876421 111211 000 00 000000000 011 13579999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC-----------------------CHHHHHHH---HHhcCC-CeEEEec
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-----------------------APSITKVY---MENTSP-DFAVGEK 228 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i-----------------------~~~~~~~~---~~~~~p-~~~~gE~ 228 (358)
||+||++|++++++|++++||||||+|+++++ +.+||+++ +++.+| +++|||.
T Consensus 283 ~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~ 362 (633)
T PRK12313 283 KNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEE 362 (633)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 99999999999999999999999999998754 15788887 556677 8999998
Q ss_pred cCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc-hhhhhhcCCCCCCccCCCCCceeeccc
Q 018278 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGFIGILPQNAVTFID 307 (358)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~f~~ 307 (358)
+...+.. ......+.-+++..+++.+...+...+..+ ..+-................ ..++++
T Consensus 363 ~~~~~~~---------------~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~l~~ 426 (633)
T PRK12313 363 STAWPKV---------------TGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSFMYAFSE-NFVLPF 426 (633)
T ss_pred CCCCccc---------------cccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHHhhhhhc-ccccCC
Confidence 7542100 000000011122223333333222222111 00000000000000000111 124678
Q ss_pred CCCC-----CcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 308 NHDT-----GSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 308 nHD~-----~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
|||+ +|+...+..+. .+++++++++||+||+||||||+|+|+..+.
T Consensus 427 sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~ 481 (633)
T PRK12313 427 SHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEW 481 (633)
T ss_pred CCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccC
Confidence 9999 45555544333 5688999999999999999999999987654
|
|
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=395.00 Aligned_cols=296 Identities=17% Similarity=0.204 Sum_probs=193.7
Q ss_pred CceEEEeeecCC-------CCCCCCchHHHH--hhhhhHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCCC
Q 018278 23 PALLFQGFNWES-------SNKAGGWYNSLK--NSIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYDL 82 (358)
Q Consensus 23 ~~v~~q~F~~~~-------~~~~~G~~~gl~--~~L~yl~~LGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~i 82 (358)
+.|||+....+. .++..|++++|. ++|+|||+||||+||||||+++. +||||++.|||+|
T Consensus 158 d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~ 237 (1221)
T PRK14510 158 DSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAP 237 (1221)
T ss_pred cCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCc
Confidence 468887653211 122345666666 44669999999999999999864 3689999999999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCC
Q 018278 83 DASKYG--SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160 (358)
Q Consensus 83 d~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (358)
+ |+|| +.+|||+||++||++||+||||+|+|||+.++... ....+.+....+++.... .....+
T Consensus 238 d-p~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~--p~~~~~~~d~~~yy~~~~-----------~~~~~y 303 (1221)
T PRK14510 238 D-PRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG--PTLSAYGSDNSPYYRLEP-----------GNPKEY 303 (1221)
T ss_pred C-hhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC--CcccccCCCCCCceEecC-----------CCCCcc
Confidence 9 9999 99999999999999999999999999999875411 000111111111100000 000111
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC---CHHHHHHH---HHhcCC-CeE-----EEec
Q 018278 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY---APSITKVY---MENTSP-DFA-----VGEK 228 (358)
Q Consensus 161 ~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i---~~~~~~~~---~~~~~p-~~~-----~gE~ 228 (358)
.....+..+ +|+++|+|++++++++++|++ +||||||||+|.++ +.+||+++ +++++| .++ +||.
T Consensus 304 ~~~~G~gn~--~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~ 380 (1221)
T PRK14510 304 ENWWGCGNL--PNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEV 380 (1221)
T ss_pred cCCCCCCCc--cccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEec
Confidence 111222222 677799999999999999999 99999999999999 88898775 566655 444 9999
Q ss_pred cCCCC--CCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc---hhhhhhcCCCCCC-c--cCCCCC
Q 018278 229 WDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPG-F--IGILPQ 300 (358)
Q Consensus 229 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~---~~~~~~~~~~~~~-~--~~~~~~ 300 (358)
|...+ +..+..+. ....+|+.++..++..+.++ ...+...+..... . ....+.
T Consensus 381 Wd~~~~~~~~g~f~~-------------------~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~ 441 (1221)
T PRK14510 381 WDDGLGGYQYGKFPQ-------------------YWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFS 441 (1221)
T ss_pred ccCCCCccccCCCCc-------------------ceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcc
Confidence 97632 22111110 01234555555554444332 1111111110000 0 122467
Q ss_pred ceeecccCCCCCcCcCCCCC--------------------------------------CcchHHHHHHHHHcCCCeeeee
Q 018278 301 NAVTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTPCIV 342 (358)
Q Consensus 301 ~~v~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~l~~~pG~P~Iy 342 (358)
.++||++|||+.|+..++.+ ..++.++|++++||++||||||
T Consensus 442 ~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy 521 (1221)
T PRK14510 442 RSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLY 521 (1221)
T ss_pred cceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 78999999999886654431 0235789999999999999999
Q ss_pred cCccccCCCCCC
Q 018278 343 ISVTYPLFHPLN 354 (358)
Q Consensus 343 yGdE~G~~~~~n 354 (358)
||||+|.++..|
T Consensus 522 ~GdE~g~tq~Gn 533 (1221)
T PRK14510 522 YGDEAGRSQNGN 533 (1221)
T ss_pred cchhcccccCCC
Confidence 999999655443
|
|
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-47 Score=382.43 Aligned_cols=293 Identities=19% Similarity=0.236 Sum_probs=186.3
Q ss_pred CceEEEeeecCC----CCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCCCCCCCHHHHHH
Q 018278 23 PALLFQGFNWES----SNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 23 ~~v~~q~F~~~~----~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
..+||++...+. .+.+.|||++|+++| +|||+||||+||||||++++. +|||++.|||+|+ |+|||.+|||+
T Consensus 241 ~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~-~~~Gt~~dfk~ 319 (726)
T PRK05402 241 PISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT-SRFGTPDDFRY 319 (726)
T ss_pred CcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC-cccCCHHHHHH
Confidence 358888874221 223358999999996 999999999999999998763 7999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 018278 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (358)
||++||++||+||||+|+||++.++.. +..|.+...+...++. .+.. ..+ +..++|++
T Consensus 320 lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~~~~~--------------~~~~---~~w-~~~~~n~~ 377 (726)
T PRK05402 320 FVDACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEHADPR--------------EGEH---PDW-GTLIFNYG 377 (726)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceeccCCc--------------CCcc---CCC-CCccccCC
Confidence 999999999999999999999876421 1112110000000000 0000 001 11258999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC------------------------CHHHHHHH---HHhcCC-CeEEEe
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGE 227 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~---~~~~~p-~~~~gE 227 (358)
||+||++|++++++|++++||||||+|++.++ +.+||+++ +++.+| +++|||
T Consensus 378 ~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE 457 (726)
T PRK05402 378 RNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAE 457 (726)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999998655 24788887 556677 889999
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHH-HHHHHHcCchhhhhhcCCCCCCccCCCCCceeecc
Q 018278 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG-ILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFI 306 (358)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~ 306 (358)
.+...+.. ..+.+ .+..+++..+++.++. .+.........+.................+ .+++
T Consensus 458 ~~~~~~~~--~~~~~-------------~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~l~ 521 (726)
T PRK05402 458 ESTAWPGV--TRPTE-------------EGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLYAYSEN-FVLP 521 (726)
T ss_pred CCCCCcCc--ccccc-------------CCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhHhhhcc-ccCC
Confidence 76431100 00000 0001122222222221 111111110000000000000000001111 3477
Q ss_pred cCCCCCc-----CcCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 307 DNHDTGS-----TQRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 307 ~nHD~~r-----~~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
+|||+.+ +......+ .+++|+|++++||+||+||||||||+|+.++.+
T Consensus 522 ~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~ 578 (726)
T PRK05402 522 LSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWN 578 (726)
T ss_pred CCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCC
Confidence 8999953 33333322 246789999999999999999999999997654
|
|
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=383.08 Aligned_cols=300 Identities=21% Similarity=0.364 Sum_probs=205.9
Q ss_pred CCceEEEeeecCCCCC---------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCC-------------------C-CCC
Q 018278 22 SPALLFQGFNWESSNK---------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-------------------V-APQ 72 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~---------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-------------------~-~~~ 72 (358)
.+.|||++...+...+ ..|+|+||+++|+|||+||||+||||||++. . .+|
T Consensus 450 ~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynW 529 (1111)
T TIGR02102 450 EDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNW 529 (1111)
T ss_pred cceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccccccccc
Confidence 4579998875433221 3599999999999999999999999999851 1 149
Q ss_pred CCCccccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCC
Q 018278 73 GYMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144 (358)
Q Consensus 73 gY~~~d~~~id~~~~Gt--------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
||+|.+||+++ ++||+ .+|||+||++||++||+||||+|+||++..+. |.+..+. |...
T Consensus 530 GYdp~~yfape-~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~p~----Yy~~ 596 (1111)
T TIGR02102 530 GYDPQNYFALS-GMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLEPN----YYHF 596 (1111)
T ss_pred CCCcCcCcccc-cccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccCCC----ceEe
Confidence 99999999999 99998 58999999999999999999999999987653 2221111 1000
Q ss_pred cccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC
Q 018278 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP 221 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p 221 (358)
.+..+..... ....+++.++++||++|++++++|+++|||||||||++.+++.++++.+. ++.+|
T Consensus 597 ---------~~~~G~~~~~---~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP 664 (1111)
T TIGR02102 597 ---------MDADGTPRTS---FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINP 664 (1111)
T ss_pred ---------eCCCCCcccc---cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCc
Confidence 0000010000 01235899999999999999999999999999999999999999887774 45677
Q ss_pred -CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH---------cC---chhhhhhcC
Q 018278 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV---------QG---ELWRLKDSN 288 (358)
Q Consensus 222 -~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~---------~~---~~~~~~~~~ 288 (358)
++++||.|.... +...+. .......++.... ....|+..++..++..+ +| ....+...+
T Consensus 665 ~~~liGE~W~~~~----g~~~~~---~~~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i 736 (1111)
T TIGR02102 665 NIIMIGEGWRTYA----GDEGDP---VQAADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNI 736 (1111)
T ss_pred CEEEEEecccccC----CCCccc---ccccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhh
Confidence 889999997411 000000 0001112222221 24456666666665321 11 112222222
Q ss_pred C-CCCCccCCCCCceeecccCCCCCcCcCCCCC----C----------cchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 289 G-KPPGFIGILPQNAVTFIDNHDTGSTQRLWPF----P----------SDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 289 ~-~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~----~----------~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
. .........|.+.|+|++|||+.++...+.. + .+|.++|.+++|+++|||+|++|||++.++..
T Consensus 737 ~g~~~~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~g 816 (1111)
T TIGR02102 737 KAQPHNFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQF 816 (1111)
T ss_pred cCCccccccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCC
Confidence 1 1111112468899999999999876433221 0 13778999999999999999999999999887
Q ss_pred C
Q 018278 354 N 354 (358)
Q Consensus 354 n 354 (358)
|
T Consensus 817 n 817 (1111)
T TIGR02102 817 R 817 (1111)
T ss_pred C
Confidence 6
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645). |
| >PRK14706 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=365.64 Aligned_cols=291 Identities=18% Similarity=0.135 Sum_probs=189.4
Q ss_pred ceEEEeeecCC--CCCC-CCchHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 24 ALLFQGFNWES--SNKA-GGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 24 ~v~~q~F~~~~--~~~~-~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
.+||++-.-.. ..++ -|+|++++++| +|||+||||+|+||||++.+ .+|||++.+||+|+ ++|||.+|||+||
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~-~~~g~~~~~~~lv 223 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPT-SRLGTPEDFKYLV 223 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccc-cccCCHHHHHHHH
Confidence 58888753111 1222 37999999997 89999999999999999975 47999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 018278 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~ 177 (358)
++||++||+||||+|+||++.++.. ...|++...+...++.. . ....|.. ..+|+++|
T Consensus 224 ~~~H~~gi~VilD~v~nH~~~~~~~----l~~~dg~~~y~~~~~~~---------------g--~~~~w~~-~~~~~~~~ 281 (639)
T PRK14706 224 NHLHGLGIGVILDWVPGHFPTDESG----LAHFDGGPLYEYADPRK---------------G--YHYDWNT-YIFDYGRN 281 (639)
T ss_pred HHHHHCCCEEEEEecccccCcchhh----hhccCCCcceeccCCcC---------------C--cCCCCCC-cccCCCCH
Confidence 9999999999999999999876421 11121111000111000 0 0011111 13899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeeccCCCC----------------------CHHHHHHH---HHhcCC-CeEEEeccCC
Q 018278 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY----------------------APSITKVY---MENTSP-DFAVGEKWDS 231 (358)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i----------------------~~~~~~~~---~~~~~p-~~~~gE~~~~ 231 (358)
+||++|++++++|++++||||||+|+++++ ..+||+++ +++.+| +++|||.+++
T Consensus 282 eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~ 361 (639)
T PRK14706 282 EVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTS 361 (639)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 999999999999999999999999999886 23677776 566677 8999999864
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCceeecccCCC
Q 018278 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 310 (358)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD 310 (358)
.+ . ....... ..+++..+++.....+...+ .....+.................+ ..+++|||
T Consensus 362 ~~-------~--------v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~~~y~~~e~-~il~~SHD 424 (639)
T PRK14706 362 FP-------G--------VTVPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFFNVYRTSEN-YVLAISHD 424 (639)
T ss_pred Cc-------C--------cccccCC-CCccccEeccHHHHHHHHHhccCchhhhhchhccchhhhhhcccc-EecCCCCc
Confidence 21 0 0111111 12233333433333222222 122222111100000011111122 23789999
Q ss_pred CCcCcC--C---CCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 311 TGSTQR--L---WPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 311 ~~r~~~--~---~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
+.+... + ...+ .+++++++++++|+||+|+||||+|+|...+.+
T Consensus 425 ev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~ 477 (639)
T PRK14706 425 EVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWN 477 (639)
T ss_pred cccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCC
Confidence 987532 1 1111 256889999999999999999999999765443
|
|
| >COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=363.52 Aligned_cols=321 Identities=22% Similarity=0.308 Sum_probs=205.8
Q ss_pred ceEEEeeec---CCCC------CCCCchHHHHhhhhhHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCCCCCCCHHHH
Q 018278 24 ALLFQGFNW---ESSN------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADL 93 (358)
Q Consensus 24 ~v~~q~F~~---~~~~------~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~~d~ 93 (358)
+|+||+|.- ++++ +|+|||+||+++||||++|||++|||+||+++ ..+|||++.||+.|| |.|||++||
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id-~~~Gt~~d~ 79 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVD-PHFGTEEDF 79 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcC-cccCCHHHH
Confidence 478888751 4445 55699999999999999999999999999999 679999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEEeecccccccCCC----------CCc-ceeeccCCCC--CCCCCCCCCcccCCCCccCCCCCCC
Q 018278 94 KSLIQAFRQKGIKCLADMVINHRTAERKD----------GRG-IYCIFEGGTS--DDRLDWGPSFICRGDKEYSDGQGND 160 (358)
Q Consensus 94 ~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (358)
++||++||++||+||+|+|+||+|.+|+. +.. +|+.|.+... ..+.+|...+. ...+.+ ...+.+
T Consensus 80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 157 (505)
T COG0366 80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFG-GDAWTW-GNTGEY 157 (505)
T ss_pred HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcC-CCCCCc-CCCCce
Confidence 99999999999999999999999999861 122 5555554221 12333322221 111222 334567
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH-----------HHHHHH---HHhcCC-CeEE
Q 018278 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------SITKVY---MENTSP-DFAV 225 (358)
Q Consensus 161 ~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------~~~~~~---~~~~~p-~~~~ 225 (358)
..+.+...++|||+.||+||+++.+++++|++ +||||||+|+++++.+ .++..+ +++..+ ++..
T Consensus 158 ~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (505)
T COG0366 158 YLHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIY 236 (505)
T ss_pred EEEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhc
Confidence 77888999999999999999999999999999 9999999999999987 445444 232222 2222
Q ss_pred EeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCceee
Q 018278 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVT 304 (358)
Q Consensus 226 gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~ 304 (358)
++.+............. ... ............+++.....-.... ......+....................
T Consensus 237 ~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (505)
T COG0366 237 GEAITDVGEAPGAVKED------FAD-NTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNL 309 (505)
T ss_pred Ccceeeeeccccccchh------hhh-ccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhh
Confidence 22222100000000000 000 0000001112222222211100000 000000000000000000000111234
Q ss_pred cccCCCCCcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 305 FIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 305 f~~nHD~~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
|.+|||++|..+...... ...+++.+++++++|+|+||||+|+|+.+..+.
T Consensus 310 ~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~ 364 (505)
T COG0366 310 FLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDP 364 (505)
T ss_pred hhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCc
Confidence 899999999998876544 567788888899999999999999999987665
|
|
| >KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=355.58 Aligned_cols=326 Identities=27% Similarity=0.334 Sum_probs=227.5
Q ss_pred cCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHH
Q 018278 17 FLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d 92 (358)
.++|++.+++||++.- ++.+++.||++||++|||||++||||+|||+||++++. ++||++.||+.|+ |+|||++|
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~-p~fGt~ed 89 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLR-PRFGTEED 89 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhc-ccccHHHH
Confidence 6899999999998751 44566789999999999999999999999999999985 6999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccccCCCC---------CcceeeccCCCC------CCCCCCCCCcccCCCCccCCCC
Q 018278 93 LKSLIQAFRQKGIKCLADMVINHRTAERKDG---------RGIYCIFEGGTS------DDRLDWGPSFICRGDKEYSDGQ 157 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~---------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 157 (358)
|++||.++|++||++|+|+|+||++.+|++. ..+|+.+.++.. .++..|.+.+. ...+.+..+.
T Consensus 90 f~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~-~s~~~~~e~~ 168 (545)
T KOG0471|consen 90 FKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFG-GSAWPFDEGR 168 (545)
T ss_pred HHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhc-cccCcccccc
Confidence 9999999999999999999999999877521 224555555432 23556655443 3345666677
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCC
Q 018278 158 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP 236 (358)
Q Consensus 158 ~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~-~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~ 236 (358)
..+..+.+...+||||++||+|++.+.++++ +|++ +||||||+|+++++..+++. ..-...|.+.+||.+.+.++..
T Consensus 169 ~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~ 246 (545)
T KOG0471|consen 169 QKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVA 246 (545)
T ss_pred cceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhh
Confidence 8888889999999999999999999999999 7776 99999999999999998888 4445567888999888755332
Q ss_pred CCCCCCCCCCchh--hHHHHHHhcCCceeeeccchHHHHHHHH------------cCchh--------------------
Q 018278 237 DGKPDANQDGHRG--ALKDWVQAAGGAVAAFDFTTKGILQAAV------------QGELW-------------------- 282 (358)
Q Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~df~~~~~l~~~~------------~~~~~-------------------- 282 (358)
.....+..+.... .+..+-.........+.+.-...+.... +....
T Consensus 247 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~ 326 (545)
T KOG0471|consen 247 YQYNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVA 326 (545)
T ss_pred cccccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccch
Confidence 2222222111111 1111111111112222221111111000 11100
Q ss_pred -----hhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 283 -----RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 283 -----~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
.+..++..... ....+...++|||..|..++++... .++..++++++||+|++|+|+|+|+.+-
T Consensus 327 ~~~~~~~~~~~~~~~~----~~~~a~W~~~~~~~~r~~sr~~~~~--~~~~~~l~~tlpG~~~~y~g~e~g~~~~ 395 (545)
T KOG0471|consen 327 SIYKEVEVDWLSNHDT----ENRWAHWVLGNHDQARLASRFGSDS--VDLLNVLLLTLPGTPVTYYGEEIGMDDV 395 (545)
T ss_pred HHHHHHHHHHHhcCCc----cCCceeeeecCccchhhHHHhcchh--HHHHhHHhcccCCCceEEEeEEeeccce
Confidence 00011110000 0011234678888888888876333 6677788999999999999999999865
|
|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=352.59 Aligned_cols=293 Identities=17% Similarity=0.225 Sum_probs=191.1
Q ss_pred ceEEEeee--cC-CCCCCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 24 ALLFQGFN--WE-SSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 24 ~v~~q~F~--~~-~~~~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
-+||+.-. |. ......+++++++++ |+|||+||||+||||||++++ ++|||++.+||+++ ++|||.+|||+||
T Consensus 247 ~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~-~~~G~~~dfk~lV 325 (730)
T PRK12568 247 LSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPT-ARHGSPDGFAQFV 325 (730)
T ss_pred cEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccC-cccCCHHHHHHHH
Confidence 46777653 11 122235799999998 599999999999999999876 47999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 018278 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~ 177 (358)
++||++||+||||+|+||++.+... +..|++...+...+.. .+ ....|..+ .+|+++|
T Consensus 326 ~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~~Ye~~d~~--------------~g---~~~~W~~~-~~N~~~p 383 (730)
T PRK12568 326 DACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAALYEHADPR--------------EG---MHRDWNTL-IYNYGRP 383 (730)
T ss_pred HHHHHCCCEEEEEeccccCCccccc----cccCCCccccccCCCc--------------CC---ccCCCCCe-ecccCCH
Confidence 9999999999999999999976321 1112221100000000 00 01112222 4899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeeccCCCCC------------------------HHHHHHH---HHhcCC-CeEEEecc
Q 018278 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------------PSITKVY---MENTSP-DFAVGEKW 229 (358)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~------------------------~~~~~~~---~~~~~p-~~~~gE~~ 229 (358)
+||++|++++++|++++||||||+||++++- .+||+++ +++.+| +++|||.+
T Consensus 384 eVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEes 463 (730)
T PRK12568 384 EVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEES 463 (730)
T ss_pred HHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcC
Confidence 9999999999999999999999999987641 3588877 566778 89999986
Q ss_pred CCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhhhcCCCCCCccCCCCCceeecccC
Q 018278 230 DSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDN 308 (358)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~~n 308 (358)
...+ . .......+.-+++..+++..+.-+...+.. ...+-........++.+.... ...+..|
T Consensus 464 t~~p-------~--------vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~y~~~e-~fvlp~S 527 (730)
T PRK12568 464 TAWP-------G--------VTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLVYAFSE-RFVLPLS 527 (730)
T ss_pred CCCc-------c--------ccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhhhhhhc-cEeccCC
Confidence 4311 0 000111111123333444443333333322 111111111100111111122 2357899
Q ss_pred CCC-----CcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 309 HDT-----GSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 309 HD~-----~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
||+ .++.....++. +.+|+++++|++.||.|+||+|+|+|...+.|.
T Consensus 528 HDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~ 583 (730)
T PRK12568 528 HDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNH 583 (730)
T ss_pred CcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccC
Confidence 999 33333333332 356889999999999999999999999987765
|
|
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=345.23 Aligned_cols=190 Identities=17% Similarity=0.274 Sum_probs=141.2
Q ss_pred CCCCceEEEeeecCCCC-CCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHH
Q 018278 20 FTSPALLFQGFNWESSN-KAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKS 95 (358)
Q Consensus 20 ~~~~~v~~q~F~~~~~~-~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~ 95 (358)
+....+||++....+.. .+.|+|++++++ |+|||+||||+||||||++.+ .+|||++++||+|+ ++|||++||++
T Consensus 392 ~~~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yGtp~dfk~ 470 (897)
T PLN02960 392 VPKSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFGTPDDFKR 470 (897)
T ss_pred CCCCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccCCHHHHHH
Confidence 34556899988632222 235899999976 999999999999999999876 46999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 018278 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (358)
||++||++||+||||+|+||++.++.... ..|.+ ... .|. ..+ .. .. ...| +.+.+|++
T Consensus 471 LVd~aH~~GI~VILDvV~NH~~~d~~~~L---~~FDG-~~~---~Yf----~~~------~~-g~--~~~W-G~~~fNy~ 529 (897)
T PLN02960 471 LVDEAHGLGLLVFLDIVHSYAAADEMVGL---SLFDG-SND---CYF----HSG------KR-GH--HKRW-GTRMFKYG 529 (897)
T ss_pred HHHHHHHCCCEEEEEecccccCCccccch---hhcCC-Ccc---cee----ecC------CC-Cc--cCCC-CCcccCCC
Confidence 99999999999999999999998752110 11221 100 000 000 00 00 0111 22458999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-------------------------HHHHHHH---HHhcCC-CeEEE
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------PSITKVY---MENTSP-DFAVG 226 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------------------~~~~~~~---~~~~~p-~~~~g 226 (358)
+++||++|++++++|+++|||||||+||+..|- ..|++.+ +++..| +++||
T Consensus 530 ~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 530 DHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 999999999999999999999999999997631 1355554 455566 89999
Q ss_pred eccCC
Q 018278 227 EKWDS 231 (358)
Q Consensus 227 E~~~~ 231 (358)
|..++
T Consensus 610 Edss~ 614 (897)
T PLN02960 610 EDATF 614 (897)
T ss_pred ECCCC
Confidence 98764
|
|
| >PRK14705 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=361.74 Aligned_cols=285 Identities=19% Similarity=0.182 Sum_probs=185.5
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
..+||++.. .+... +++|++++++ |+|||+||||+||||||++++ ++|||++++||+++ ++|||++|||+||++
T Consensus 747 p~~IYEvHv-gsf~~-~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryGt~~dfk~lVd~ 823 (1224)
T PRK14705 747 PMSVYEVHL-GSWRL-GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFGHPDEFRFLVDS 823 (1224)
T ss_pred CcEEEEEEe-ccccc-CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC-cccCCHHHHHHHHHH
Confidence 358888775 44433 5789999988 699999999999999999876 57999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 018278 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v 179 (358)
||++||+||||+|+||++.+... ...|.+...+...+... + ....|. ...+|+++++|
T Consensus 824 ~H~~GI~VILD~V~nH~~~d~~~----l~~fdg~~~y~~~d~~~--------------g---~~~~Wg-~~~fn~~~~eV 881 (1224)
T PRK14705 824 LHQAGIGVLLDWVPAHFPKDSWA----LAQFDGQPLYEHADPAL--------------G---EHPDWG-TLIFDFGRTEV 881 (1224)
T ss_pred HHHCCCEEEEEeccccCCcchhh----hhhcCCCcccccCCccc--------------C---CCCCCC-CceecCCCHHH
Confidence 99999999999999999765310 00122110000000000 0 011111 13489999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeeccCCCC------------------------CHHHHHHH---HHhcCC-CeEEEeccCC
Q 018278 180 QKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKWDS 231 (358)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~---~~~~~p-~~~~gE~~~~ 231 (358)
|++|++++++|+++|||||||+|++++| ..+||+++ +++..| +++|||.+..
T Consensus 882 r~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~ 961 (1224)
T PRK14705 882 RNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTA 961 (1224)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 9999999999999999999999999876 24688887 445567 8999998865
Q ss_pred CCCC-------C-CCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCcee
Q 018278 232 LSYG-------P-DGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV 303 (358)
Q Consensus 232 ~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 303 (358)
.+-. + +-+..||.+. +..+.+|+.. ....+-........++.+....+ +
T Consensus 962 ~p~vt~p~~~GGlGFd~kWnmgw-mhd~l~Y~~~---------------------dp~~r~~~~~~ltf~~~ya~~e~-f 1018 (1224)
T PRK14705 962 FPGVTAPTSHGGLGFGLKWNMGW-MHDSLKYASE---------------------DPINRKWHHGTITFSLVYAFTEN-F 1018 (1224)
T ss_pred CcCccccccCCCccCCcEecchh-hHHHHHHhhh---------------------CcchhhcccchHHHHHHHHhhcC-E
Confidence 2100 0 1122333211 2222223221 11100000000000001101111 3
Q ss_pred ecccCCCCCcC-----cCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 304 TFIDNHDTGST-----QRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 304 ~f~~nHD~~r~-----~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
.+..|||+... ....+++ -..+++++++++++||+|+||||+|+|...++|.
T Consensus 1019 vl~~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~ 1079 (1224)
T PRK14705 1019 LLPISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSE 1079 (1224)
T ss_pred ecccccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccc
Confidence 35668997421 1111111 1256889999999999999999999999987763
|
|
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=326.98 Aligned_cols=285 Identities=20% Similarity=0.264 Sum_probs=188.2
Q ss_pred eEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (358)
Q Consensus 25 v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~ 102 (358)
|.+-+|.++ ..-|+++..+++|+|||+||||+|+||||.+.+. +|||+++-||++. ++|||++|||+||++||+
T Consensus 150 lHvGs~~~~---~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~-sryGtPedfk~fVD~aH~ 225 (628)
T COG0296 150 LHVGSFTPD---RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPT-SRYGTPEDFKALVDAAHQ 225 (628)
T ss_pred EEeeeccCC---CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceecccc-ccCCCHHHHHHHHHHHHH
Confidence 344445542 2248999999999999999999999999999884 7999999999999 999999999999999999
Q ss_pred cCCEEEEEeecccccccCCCCCccee-eccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 018278 103 KGIKCLADMVINHRTAERKDGRGIYC-IFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181 (358)
Q Consensus 103 ~Gi~VilD~V~NH~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~ 181 (358)
+||.||||+|+||.+.+.. +. .|.+...+...++. .+..+.|+.. -.|++.++||+
T Consensus 226 ~GIgViLD~V~~HF~~d~~-----~L~~fdg~~~~e~~~~~----~~~~~~Wg~~--------------i~~~gr~EVR~ 282 (628)
T COG0296 226 AGIGVILDWVPNHFPPDGN-----YLARFDGTFLYEHEDPR----RGEHTDWGTA--------------IFNYGRNEVRN 282 (628)
T ss_pred cCCEEEEEecCCcCCCCcc-----hhhhcCCccccccCCcc----cccCCCcccc--------------hhccCcHHHHH
Confidence 9999999999999998642 11 12221111111111 0111222211 14556999999
Q ss_pred HHHHHHHHHHHhcCCCeEeeccCCCCCH------------------------HHHHHH---HHhcCC-CeEEEeccCCCC
Q 018278 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAP------------------------SITKVY---MENTSP-DFAVGEKWDSLS 233 (358)
Q Consensus 182 ~l~~~~~~w~~~~gvDGfR~D~a~~i~~------------------------~~~~~~---~~~~~p-~~~~gE~~~~~~ 233 (358)
+|++.+.+|+++|+|||||+|||..|.. +|+++. +....| .+.|+|.|+..+
T Consensus 283 Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~ 362 (628)
T COG0296 283 FLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDP 362 (628)
T ss_pred HHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCC
Confidence 9999999999999999999999988721 233332 344456 788999987522
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHH-HHHHHH--cC--chhhhhhcCCCCCCccCCCCCceeecccC
Q 018278 234 YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG-ILQAAV--QG--ELWRLKDSNGKPPGFIGILPQNAVTFIDN 308 (358)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~-~l~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~v~f~~n 308 (358)
. -.+...+++ ..|+|.... .+.+.+ .+ ...+.........++. ..++..+.+..|
T Consensus 363 ~--------------~t~~~~~gG-----~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~-y~~se~~~l~~s 422 (628)
T COG0296 363 H--------------VTLPVAIGG-----LGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLL-YAFSENVVLPLS 422 (628)
T ss_pred C--------------ceeeecccc-----cchhhhhhhhhHhhHHHhcccCccccccccCCCccccc-cccceeEecccc
Confidence 0 011111111 112222211 233322 11 1111111111111111 235667889999
Q ss_pred CCCC--cCcCCCC-------CCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCCC
Q 018278 309 HDTG--STQRLWP-------FPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNVL 356 (358)
Q Consensus 309 HD~~--r~~~~~~-------~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~~ 356 (358)
||+- -..++.. .....++.++++|++.||+|++|||+|+|...|+|.+
T Consensus 423 HDevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~ 479 (628)
T COG0296 423 HDEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFF 479 (628)
T ss_pred ccceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCccc
Confidence 9985 2222211 1334678899999999999999999999999999865
|
|
| >TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=317.87 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=191.2
Q ss_pred ceEEEeeecCCCCCCC-CchHHHHh--hhhhHHHcCCCEEEeCCCCCC---------CC-CCCCCccccCCCCCCCCCCH
Q 018278 24 ALLFQGFNWESSNKAG-GWYNSLKN--SIPDLSNAGITHVWLPPPSQS---------VA-PQGYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~-G~~~gl~~--~L~yl~~LGv~~I~l~Pi~~~---------~~-~~gY~~~d~~~id~~~~Gt~ 90 (358)
.|++.+++--...+.+ .=|..|.+ ..+||++|||++|||+|++++ +. +.||++.| +.|| |+|||+
T Consensus 52 ~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Id-p~~GT~ 129 (688)
T TIGR02455 52 SVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDID-PLLGSE 129 (688)
T ss_pred CeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccC-cccCCH
Confidence 5777777622222223 33444433 478999999999999999999 65 78999999 6999 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccCC--------CCCccee-----------eccCCCCC---------------
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERK--------DGRGIYC-----------IFEGGTSD--------------- 136 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~--------~~~~~~~-----------~~~~~~~~--------------- 136 (358)
+||++|+++||++||+||+|+|+||||..|+ .++++|| .|.+..+.
T Consensus 130 eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~ 209 (688)
T TIGR02455 130 EELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELK 209 (688)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHh
Confidence 9999999999999999999999999999986 2233444 55442211
Q ss_pred ------C---CCCCCCCcccCCCCccC--------CCCCCCCCCCCCCCCCCCCCCCHH--HHHHHH-HHHHHHHHhcCC
Q 018278 137 ------D---RLDWGPSFICRGDKEYS--------DGQGNDDTGEDFQPAPDIDHLNPR--VQKELS-DWMNWLKTEIGF 196 (358)
Q Consensus 137 ------~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~dln~~n~~--v~~~l~-~~~~~w~~~~gv 196 (358)
. +.-|.........+.+. .....++.+.|+..+||||+.||. ||+.|+ +++++|++ .|+
T Consensus 210 ~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG~ 288 (688)
T TIGR02455 210 AKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LGA 288 (688)
T ss_pred hccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hcc
Confidence 0 00110011111123332 233456678889999999999999 999999 89999998 999
Q ss_pred CeEeeccCCCCC-------------HHH---HHHHHH--hcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh
Q 018278 197 DGWRFDFVKGYA-------------PSI---TKVYME--NTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 257 (358)
Q Consensus 197 DGfR~D~a~~i~-------------~~~---~~~~~~--~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (358)
+|||+||+..+. ..+ .++++. ..++ .++++|.--. .+.+..|++
T Consensus 289 ~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~----------------~~d~~~~~g- 351 (688)
T TIGR02455 289 RGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLT----------------IDDIAAMSH- 351 (688)
T ss_pred ccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCC----------------HHHHHHHhC-
Confidence 999999987662 234 445555 4566 8899997543 688889998
Q ss_pred cCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCCceeecccCCCC
Q 018278 258 AGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (358)
Q Consensus 258 ~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~ 311 (358)
++.+..|||..+..+..++ .++..-++..+...... +-.+.+.++|+.|||+
T Consensus 352 -~~~dl~~dF~t~p~~~~AL~tgda~pLr~~L~~~~~~-gid~~~~~~~LrNHDE 404 (688)
T TIGR02455 352 -GGADLSYDFITRPAYHHALLTGDTEFLRLMLKEMHAF-GIDPASLIHALQNHDE 404 (688)
T ss_pred -CCcceeecccccHHHHHHHHcCCHHHHHHHHHhhhcC-CCCchhhhhhccCccc
Confidence 3788999999988888776 56655555444332221 2235677899999998
|
Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. |
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=325.67 Aligned_cols=284 Identities=19% Similarity=0.270 Sum_probs=183.7
Q ss_pred CceEEEeeecCCCCC-CCCchHHHHh-hhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNK-AGGWYNSLKN-SIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~-~~G~~~gl~~-~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~ 98 (358)
..+||++..-.+..+ ..|+++++++ +|+|||+||||+||||||++.+ .+|||++.+||+++ ++|||.+|||+||+
T Consensus 229 ~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd 307 (758)
T PLN02447 229 ALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLID 307 (758)
T ss_pred CCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHH
Confidence 357888765222222 2589999865 5999999999999999999986 47999999999999 99999999999999
Q ss_pred HHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 018278 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (358)
Q Consensus 99 ~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~ 178 (358)
+||++||+||||+|+||++.++... ...|++ ... .|... ....+ ...+ +...+|+++++
T Consensus 308 ~aH~~GI~VilDvV~nH~~~~~~~g---l~~fDg-~~~---~Yf~~-----------~~~g~--~~~w-~~~~~N~~~~e 366 (758)
T PLN02447 308 KAHSLGLRVLMDVVHSHASKNTLDG---LNGFDG-TDG---SYFHS-----------GPRGY--HWLW-DSRLFNYGNWE 366 (758)
T ss_pred HHHHCCCEEEEEecccccccccccc---ccccCC-CCc---ccccc-----------CCCCC--cCcC-CCceecCCCHH
Confidence 9999999999999999999764311 111221 110 11100 00000 0011 12359999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeeccCCCCC--------------------------HHHHHHH---HHhcCC-CeEEEec
Q 018278 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYA--------------------------PSITKVY---MENTSP-DFAVGEK 228 (358)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~--------------------------~~~~~~~---~~~~~p-~~~~gE~ 228 (358)
||++|++++++|+++|||||||+|++++|- ..|++.+ +++..| +++|||.
T Consensus 367 Vr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd 446 (758)
T PLN02447 367 VLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAED 446 (758)
T ss_pred HHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 999999999999999999999999999772 1245444 566677 8999999
Q ss_pred cCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccch----HHHHHHHHcC---chhhhhhcCCCCCCccC-CCCC
Q 018278 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT----KGILQAAVQG---ELWRLKDSNGKPPGFIG-ILPQ 300 (358)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~----~~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~ 300 (358)
+++.+ ..+ +..- .+++ .||+.+ ...+.+.+.. ..+.+..... .+.. ...+
T Consensus 447 ~s~~p-------~l~--------~p~~--~GGl--GFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~---sl~~r~~~E 504 (758)
T PLN02447 447 VSGMP-------TLC--------RPVQ--EGGV--GFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVH---TLTNRRYTE 504 (758)
T ss_pred CCCCC-------Ccc--------ccCC--CCcC--CcceEECCccchHHHHHHhhCCCcccCHHHHHH---HHhcccccC
Confidence 86522 111 0000 1111 244433 2222222211 1111111110 1111 2456
Q ss_pred ceeecccCCCCCcCc--CC----C--------CC-Cc-----ch----HHHHHHHHHcCCCe-eeeecCccccCC
Q 018278 301 NAVTFIDNHDTGSTQ--RL----W--------PF-PS-----DK----VMLGYAYILTHPGT-PCIVISVTYPLF 350 (358)
Q Consensus 301 ~~v~f~~nHD~~r~~--~~----~--------~~-~~-----~~----~~~a~a~l~~~pG~-P~IyyGdE~G~~ 350 (358)
+.|.|.+|||+.... ++ . .. .. .| -|+..++++++||. +++|+|+|+|..
T Consensus 505 ~~I~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ 579 (758)
T PLN02447 505 KCVAYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHP 579 (758)
T ss_pred ceEeccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCc
Confidence 788999999995431 10 1 11 00 11 14455788999999 799999999985
|
|
| >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=331.88 Aligned_cols=298 Identities=17% Similarity=0.309 Sum_probs=190.1
Q ss_pred CCCCchHHHHhh-------hhhHHHcCCCEEEeCCCCCCC----------------------------------------
Q 018278 37 KAGGWYNSLKNS-------IPDLSNAGITHVWLPPPSQSV---------------------------------------- 69 (358)
Q Consensus 37 ~~~G~~~gl~~~-------L~yl~~LGv~~I~l~Pi~~~~---------------------------------------- 69 (358)
+..|+|.+++++ |+||++||||+|+|||+++..
T Consensus 273 ~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 352 (898)
T TIGR02103 273 ELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQ 352 (898)
T ss_pred CcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhcccccccccccccccccccc
Confidence 347999999886 666678899999999998641
Q ss_pred ------------------------CCCCCCccccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 70 ------------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 70 ------------------------~~~gY~~~d~~~id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
.+|||+|..|++++ .+|+| ..|||+||++||++||+||||+|+||++.
T Consensus 353 ~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPe-gSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~ 431 (898)
T TIGR02103 353 LKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPE-GSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNA 431 (898)
T ss_pred ccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcC-hhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccc
Confidence 15999999999999 99988 37999999999999999999999999998
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
.++.... .+..-.+. |..+. +..+..... ....+++.+||+||++|++++++|+++|||||
T Consensus 432 ~g~~~~s---~ld~~~P~----YY~r~---------~~~G~~~n~---~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDG 492 (898)
T TIGR02103 432 SGPNDRS---VLDKIVPG----YYHRL---------NEDGGVENS---TCCSNTATEHRMMAKLIVDSLVVWAKDYKVDG 492 (898)
T ss_pred cCccCcc---cccccCcH----hhEee---------CCCCCeecC---CCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 7642211 11111110 11000 000111111 11245799999999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHH---HHhcCC-CeEEEeccCCCCCCC------CCCCC---CCCCCchhhHHHHHHhcCCcee--
Q 018278 199 WRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWDSLSYGP------DGKPD---ANQDGHRGALKDWVQAAGGAVA-- 263 (358)
Q Consensus 199 fR~D~a~~i~~~~~~~~---~~~~~p-~~~~gE~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 263 (358)
||||++++++.+||+++ +++.+| ++++||.|..+.... ....+ -.=+.|.+.+++-+.+.+....
T Consensus 493 FRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~~~ 572 (898)
T TIGR02103 493 FRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDSGD 572 (898)
T ss_pred EEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCcccccc
Confidence 99999999999999888 455677 889999997432110 00000 0001222333333332110000
Q ss_pred ------eeccc---------------------hHHHHHHHHcCchhhh--hhcC------------CCCCCccCCCCCce
Q 018278 264 ------AFDFT---------------------TKGILQAAVQGELWRL--KDSN------------GKPPGFIGILPQNA 302 (358)
Q Consensus 264 ------~~df~---------------------~~~~l~~~~~~~~~~~--~~~~------------~~~~~~~~~~~~~~ 302 (358)
.|--. ..+.++..+.|++... .+.. +.+.+ ....|...
T Consensus 573 ~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~-ya~~P~e~ 651 (898)
T TIGR02103 573 ALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAG-YAADPTET 651 (898)
T ss_pred ccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccc-cccCHHHh
Confidence 00000 1123333344443211 1110 00011 11367889
Q ss_pred eecccCCCCCcCcCCC----C--CC-c---chHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 303 VTFIDNHDTGSTQRLW----P--FP-S---DKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 303 v~f~~nHD~~r~~~~~----~--~~-~---~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
|+||++||+..+-..+ . .. . ++.++|++++++..|||+|..|+|+..++..++
T Consensus 652 inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~ 714 (898)
T TIGR02103 652 INYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDR 714 (898)
T ss_pred eeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCC
Confidence 9999999996422211 1 11 1 234689999999999999999999988766544
|
Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). |
| >COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=318.43 Aligned_cols=298 Identities=21% Similarity=0.295 Sum_probs=201.6
Q ss_pred CCceEEEeeecCC-------CCCCCCchHHHHhh--hhhHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCC
Q 018278 22 SPALLFQGFNWES-------SNKAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (358)
Q Consensus 22 ~~~v~~q~F~~~~-------~~~~~G~~~gl~~~--L~yl~~LGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (358)
.+.|||.+=-.+. +...+|||.|+++. |+|||+||||+|+||||+... .+|||+|..||+
T Consensus 170 ~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFA 249 (697)
T COG1523 170 EDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFA 249 (697)
T ss_pred cceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccC
Confidence 4468887642222 23347999999999 999999999999999998632 489999999999
Q ss_pred CCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccC
Q 018278 82 LDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (358)
Q Consensus 82 id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (358)
++ ++|-+ ..|||.||+++|++||.||||||+|||+.... .+.-..|++-.+.++..-.+... ..-.
T Consensus 250 p~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~--~g~t~~f~~id~~~Yyr~~~dg~----~~N~ 322 (697)
T COG1523 250 PE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNE--LGPTLSFRGIDPNYYYRLDPDGY----YSNG 322 (697)
T ss_pred CC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccC--cCcccccccCCcCceEEECCCCC----eecC
Confidence 99 99865 45999999999999999999999999986421 11112344322222211111100 1112
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHH-----HHHHH--hcCC----Ce
Q 018278 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT-----KVYME--NTSP----DF 223 (358)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~-----~~~~~--~~~p----~~ 223 (358)
.+|+|. ||.++|.||++|+|++++|++|++|||||||.+..+..+-. ..++. +..| .-
T Consensus 323 TGcGNt-----------ln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~k 391 (697)
T COG1523 323 TGCGNT-----------LNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVK 391 (697)
T ss_pred CccCcc-----------cccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCce
Confidence 355555 99999999999999999999999999999999998876544 11221 1222 23
Q ss_pred EEEeccCCC--CCCC------CCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCcc
Q 018278 224 AVGEKWDSL--SYGP------DGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFI 295 (358)
Q Consensus 224 ~~gE~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 295 (358)
++||-|+-+ .|+. .++.+|| +.+++.+++|+.++.+ ....+...+.|+. .+. ...
T Consensus 392 liAepwD~g~~gyqvG~Fpd~~~~aewn-g~~rD~vr~F~~G~~~--------~~~~~a~rl~gS~-d~~-------~~~ 454 (697)
T COG1523 392 LIAEPWDIGPGGYQVGNFPDSPRWAEWN-GRFRDDVRRFWRGDAG--------LVGEFAKRLAGSS-DLY-------KRN 454 (697)
T ss_pred eeecchhhcCCCcccccCCCccchhhhC-CcccccccceeeCCCc--------cHHHHHHHhhcCc-chh-------hcc
Confidence 899999654 3433 2344777 6678888888875443 2334444333332 111 112
Q ss_pred CCCCCceeecccCCCCCcCcCCC-----------------------------C---------CCcchHHHHHHHHHcCCC
Q 018278 296 GILPQNAVTFIDNHDTGSTQRLW-----------------------------P---------FPSDKVMLGYAYILTHPG 337 (358)
Q Consensus 296 ~~~~~~~v~f~~nHD~~r~~~~~-----------------------------~---------~~~~~~~~a~a~l~~~pG 337 (358)
+..|.++|+||.+||.-.+...+ + ......+..++.++...|
T Consensus 455 ~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG 534 (697)
T COG1523 455 GRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQG 534 (697)
T ss_pred CCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcC
Confidence 34688999999999982211100 0 011223456677788899
Q ss_pred eeeeecCccccCCCCCC
Q 018278 338 TPCIVISVTYPLFHPLN 354 (358)
Q Consensus 338 ~P~IyyGdE~G~~~~~n 354 (358)
+||+-.|||+|.++.+|
T Consensus 535 ~pml~~gDe~~rtq~gn 551 (697)
T COG1523 535 TPMLLAGDEFGRTQYGN 551 (697)
T ss_pred Ccccccccccccccccc
Confidence 99999999999976655
|
|
| >PLN02877 alpha-amylase/limit dextrinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=316.49 Aligned_cols=314 Identities=18% Similarity=0.251 Sum_probs=193.8
Q ss_pred CceEEEeeecCCC-------CCCCCchHHHHhh-------hhhHHHcCCCEEEeCCCCCCC-------------------
Q 018278 23 PALLFQGFNWESS-------NKAGGWYNSLKNS-------IPDLSNAGITHVWLPPPSQSV------------------- 69 (358)
Q Consensus 23 ~~v~~q~F~~~~~-------~~~~G~~~gl~~~-------L~yl~~LGv~~I~l~Pi~~~~------------------- 69 (358)
+.|||+.=-.|.. .+..|+|.+++++ |+||++||||+|+|||+++..
T Consensus 339 D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~ 418 (970)
T PLN02877 339 DISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEK 418 (970)
T ss_pred ccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhcc
Confidence 4577776432221 2346999999876 666777799999999998741
Q ss_pred --------------------CCCCCCccccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccccCCC
Q 018278 70 --------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKD 122 (358)
Q Consensus 70 --------------------~~~gY~~~d~~~id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~ 122 (358)
.+|||+|..|++++ .+|+| ..|||+||++||++||+||||+|+||++..++.
T Consensus 419 ~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPE-gSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~ 497 (970)
T PLN02877 419 LPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPK-GSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPF 497 (970)
T ss_pred ccccchhhhhcccccccCCCCCCCCCccccCCCC-cccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCc
Confidence 46999999999999 99998 368999999999999999999999999875431
Q ss_pred CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeec
Q 018278 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D 202 (358)
... ..+++..+.++.... ..+..... ....+.+.+++.||++|++++++|+++|||||||||
T Consensus 498 ~~~--s~ld~~vP~YY~r~~-------------~~G~~~ns---~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFD 559 (970)
T PLN02877 498 DEN--SVLDKIVPGYYLRRN-------------SDGFIENS---TCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFD 559 (970)
T ss_pred chh--hcccCCCCCceEEEC-------------CCCCcccC---CccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 110 012211111110000 00000000 011236789999999999999999999999999999
Q ss_pred cCCCCCHHHHHHH---HHhc--------CC-CeEEEeccCCCCCCCCC---CC-C-----CCCCCchhhHHHHHHhcC--
Q 018278 203 FVKGYAPSITKVY---MENT--------SP-DFAVGEKWDSLSYGPDG---KP-D-----ANQDGHRGALKDWVQAAG-- 259 (358)
Q Consensus 203 ~a~~i~~~~~~~~---~~~~--------~p-~~~~gE~~~~~~~~~~~---~~-~-----~~~~~~~~~~~~~~~~~~-- 259 (358)
.+.+++.+.+.++ +++. .| ++++||.|.-++..... .. . -.-+.|.+.+++-+.+.+
T Consensus 560 lmg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F 639 (970)
T PLN02877 560 LMGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPF 639 (970)
T ss_pred ccccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCC
Confidence 9999999977654 4443 24 88999999753211000 00 0 001223334444443211
Q ss_pred ------Cceee-ec------c-----------chHHHHHHHHcCchhhh--hhcCC------------CCCCccCCCCCc
Q 018278 260 ------GAVAA-FD------F-----------TTKGILQAAVQGELWRL--KDSNG------------KPPGFIGILPQN 301 (358)
Q Consensus 260 ------~~~~~-~d------f-----------~~~~~l~~~~~~~~~~~--~~~~~------------~~~~~~~~~~~~ 301 (358)
++... +. . .+...++..+.|++..+ .+..+ ..+......|.+
T Consensus 640 ~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q 719 (970)
T PLN02877 640 GHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTE 719 (970)
T ss_pred CCcCCCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHH
Confidence 11000 00 0 01233444444544221 11100 000011235789
Q ss_pred eeecccCCCCCcCcCCC----CC------CcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 302 AVTFIDNHDTGSTQRLW----PF------PSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 302 ~v~f~~nHD~~r~~~~~----~~------~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
.|+|+++||+..+-..+ .. ..++.++|++++++..|||+|..|+|+..++..++
T Consensus 720 ~InYvs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~ 783 (970)
T PLN02877 720 TINYVSAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDR 783 (970)
T ss_pred heeeeeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCC
Confidence 99999999995432211 10 11345689999999999999999999988766554
|
|
| >KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=275.66 Aligned_cols=148 Identities=26% Similarity=0.419 Sum_probs=118.8
Q ss_pred CCchHHHHhh-hhhHHHcCCCEEEeCCCCCCC---CCCCCCccccCCCCCCCCCCHH------HHHHHHHHHHHcCCEEE
Q 018278 39 GGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA------DLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 39 ~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~~------d~~~Lv~~~H~~Gi~Vi 108 (358)
+| +++.++| |++||+||+|||+||||+|.. ..+||.|++||++- +||||.+ |||+||++||..||.|+
T Consensus 251 ~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFaps-srYgt~~s~~ri~efK~lVd~aHs~GI~Vl 328 (757)
T KOG0470|consen 251 GG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPS-SRYGTPESPCRINEFKELVDKAHSLGIEVL 328 (757)
T ss_pred cc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccc-ccccCCCcccchHHHHHHHHHHhhCCcEEe
Confidence 45 9999999 999999999999999999994 36999999999999 9999999 99999999999999999
Q ss_pred EEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018278 109 ADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (358)
Q Consensus 109 lD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~ 188 (358)
||+|.||++.+.. ...+.|++..+..+.--.+++. . .-++.+. +|++.|+|+++|++.++
T Consensus 329 LDVV~sHaa~n~~---d~l~~fdGid~~~Yf~~~~r~~-----h-~~~~~r~-----------fn~~~~~V~rflL~nLr 388 (757)
T KOG0470|consen 329 LDVVHSHAAKNSK---DGLNMFDGIDNSVYFHSGPRGY-----H-NSWCSRL-----------FNYNHPVVLRFLLSNLR 388 (757)
T ss_pred hhhhhhhcccCcC---CcchhccCcCCceEEEeCCccc-----c-ccccccc-----------ccCCCHHHHHHHHHHHH
Confidence 9999999998433 2233455433222211111000 0 0122333 99999999999999999
Q ss_pred HHHHhcCCCeEeeccCCCCC
Q 018278 189 WLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 189 ~w~~~~gvDGfR~D~a~~i~ 208 (358)
||++||+|||||||.+.+|-
T Consensus 389 ~WVtEY~vDGFRFD~~ssm~ 408 (757)
T KOG0470|consen 389 WWVTEYHVDGFRFDLVSSML 408 (757)
T ss_pred HHHHheeccceEEcchhhhh
Confidence 99999999999999998773
|
|
| >KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-31 Score=232.48 Aligned_cols=296 Identities=20% Similarity=0.357 Sum_probs=206.1
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhh-hHHHcCCCEEEeCCCCCCCC--------CCCCCccccCCCCCCCCCCHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPSQSVA--------PQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~-yl~~LGv~~I~l~Pi~~~~~--------~~gY~~~d~~~id~~~~Gt~~ 91 (358)
..+..|+|.|+|. |.+|+...+ .|+--|+.+|+++|+.|+-- ...|+|.. |.++ +|-|.++
T Consensus 26 ~~R~tmVHLFEWK--------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~-tRSGNE~ 95 (504)
T KOG2212|consen 26 QGRTTIVHLFEWK--------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLC-TRSGNED 95 (504)
T ss_pred cCcceEEEEEEee--------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEee-ccCCCHH
Confidence 4558999999997 999998877 77889999999999998542 23799996 7899 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCCC-----Ccceeecc-----CCCCCCCCCCCCCcccCCC---CccCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDG-----RGIYCIFE-----GGTSDDRLDWGPSFICRGD---KEYSDGQG 158 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 158 (358)
+|+.||+.|.+.|+++++|+|+|||+....+. .+.+ .++ ++.|++..++++.....+- ..|+ ..
T Consensus 96 eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~-~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~N--da 172 (504)
T KOG2212|consen 96 EFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSY-FNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYN--DA 172 (504)
T ss_pred HHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCc-cCCCCCCCCCCCcccccCCCcccCCCcccccccc--ch
Confidence 99999999999999999999999998632100 0000 011 1233333333332111110 1111 12
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcC-----------CCeEEEe
Q 018278 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS-----------PDFAVGE 227 (358)
Q Consensus 159 ~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~-----------p~~~~gE 227 (358)
..+..|...++.|||..+..||..|++.+.++++ .||-|||+||+|||.++-+..++...+ ..|++-|
T Consensus 173 ~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~qE 251 (504)
T KOG2212|consen 173 TQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIYQE 251 (504)
T ss_pred hhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceehhh
Confidence 3456677889999999999999999999999998 999999999999999987777644311 1467777
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhhhcCCCCCCccCCCCCceeecc
Q 018278 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFI 306 (358)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~ 306 (358)
+.+.+. .+. .-.+|.+ ...+.+|.+...+..++.+ +..+....++..-+.. ...++++|+
T Consensus 252 VID~Gg-----E~v--------~~~dY~g----~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf~--~s~~~L~Fv 312 (504)
T KOG2212|consen 252 VIDLGG-----EPI--------KSSDYFG----NGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGFM--PSDRALVFV 312 (504)
T ss_pred hhhcCC-----cee--------ecccccC----CceeeeeechHHHHHHHhcchhHHHHHhcCCccCcC--CCcceEEEe
Confidence 775411 000 0012322 3344566777778888754 3334344444333332 235789999
Q ss_pred cCCCCCcCcCC-----CCC-CcchHHHHHHHHHcCC-CeeeeecCccccC
Q 018278 307 DNHDTGSTQRL-----WPF-PSDKVMLGYAYILTHP-GTPCIVISVTYPL 349 (358)
Q Consensus 307 ~nHD~~r~~~~-----~~~-~~~~~~~a~a~l~~~p-G~P~IyyGdE~G~ 349 (358)
+|||++|.... +.+ ..+++++|.+|||..| |+|.|...--+-.
T Consensus 313 DNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~ 362 (504)
T KOG2212|consen 313 DNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDV 362 (504)
T ss_pred ccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeec
Confidence 99999997654 222 4567899999999999 9999987744433
|
|
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=258.50 Aligned_cols=192 Identities=20% Similarity=0.246 Sum_probs=146.0
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
++||++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||.++|++||++||++||+||+|+|+||+
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~id-p~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEIN-PELGGEEGLRRLSEAARARGLGLIVDIVPNHM 90 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcC-CCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 6999999999999999999999999999874 57999999999999 99999999999999999999999999999999
Q ss_pred ccc---CCC-----------CCcceee--ccCCC------------CC----------------C--CCCCCCCcccCCC
Q 018278 117 TAE---RKD-----------GRGIYCI--FEGGT------------SD----------------D--RLDWGPSFICRGD 150 (358)
Q Consensus 117 ~~~---~~~-----------~~~~~~~--~~~~~------------~~----------------~--~~~~~~~~~~~~~ 150 (358)
|.+ |++ +..+|+. |.... ++ . ...++...+.-..
T Consensus 91 a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p 170 (825)
T TIGR02401 91 AVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAP 170 (825)
T ss_pred ccccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCc
Confidence 987 221 1122321 11100 00 0 0001110000000
Q ss_pred C------------------------------ccC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 151 K------------------------------EYS--DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 151 ~------------------------------~~~--~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
. .|. +..-||........+++|+.++|+|.++..+.+..|+++.-|||
T Consensus 171 ~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdG 250 (825)
T TIGR02401 171 GTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDG 250 (825)
T ss_pred cchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCce
Confidence 0 111 22345555566788999999999999999999999999555999
Q ss_pred EeeccCCCC--CHHHHHHHHHhcCC-CeEEEe-ccCC
Q 018278 199 WRFDFVKGY--APSITKVYMENTSP-DFAVGE-KWDS 231 (358)
Q Consensus 199 fR~D~a~~i--~~~~~~~~~~~~~p-~~~~gE-~~~~ 231 (358)
+|+|++.++ |..+|+++.++..| .+++.| ++..
T Consensus 251 lRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 251 LRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EEeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 999999999 78899999887776 888888 5544
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=208.73 Aligned_cols=93 Identities=28% Similarity=0.554 Sum_probs=88.3
Q ss_pred ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC----CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~----~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
+|+++.|. +++++++|||++|+++|+||++|||++|||+|+++++ .++||++.||++++ |+|||++||++||++
T Consensus 1 qi~~~~F~-~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~-~~~Gt~~d~~~lv~~ 78 (166)
T smart00642 1 QIYPDRFA-DGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQID-PRFGTMEDFKELVDA 78 (166)
T ss_pred Ceeecccc-CCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCC-cccCCHHHHHHHHHH
Confidence 58899999 5677779999999999999999999999999999988 68999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccc
Q 018278 100 FRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~ 118 (358)
||++||+||+|+|+||++.
T Consensus 79 ~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 79 AHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHCCCEEEEEECCCCCCC
Confidence 9999999999999999974
|
|
| >PLN03244 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=238.23 Aligned_cols=135 Identities=20% Similarity=0.320 Sum_probs=96.1
Q ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccC
Q 018278 75 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (358)
Q Consensus 75 ~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (358)
++++||+++ ++|||++|||+||++||++||+||||+|+||++.+....- ..|.+ .+. .|... +
T Consensus 426 ~vt~fFAps-sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL---~~fDG-t~~---~Yf~~----~----- 488 (872)
T PLN03244 426 KVTNFFAAS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGL---SLFDG-SND---CYFHT----G----- 488 (872)
T ss_pred ccCcccccC-cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccch---hhcCC-Ccc---ceecc----C-----
Confidence 488999999 9999999999999999999999999999999997642110 11221 110 01000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-------------------------H
Q 018278 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------P 209 (358)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------------------~ 209 (358)
..+ .. ..| +...+|+++++|+++|++++++|+++|||||||+|++..|- .
T Consensus 489 -~~g-~~--~~W-Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv 563 (872)
T PLN03244 489 -KRG-HH--KHW-GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDAL 563 (872)
T ss_pred -CCC-cc--CCC-CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHH
Confidence 000 00 011 11348999999999999999999999999999999994432 1
Q ss_pred HHHH---HHHHhcCC-CeEEEeccCC
Q 018278 210 SITK---VYMENTSP-DFAVGEKWDS 231 (358)
Q Consensus 210 ~~~~---~~~~~~~p-~~~~gE~~~~ 231 (358)
.|++ +.+++..| +++|||..++
T Consensus 564 ~fL~laN~~ih~~~P~~itIAEDsS~ 589 (872)
T PLN03244 564 MYLILANEILHALHPKIITIAEDATY 589 (872)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 2333 33666778 8899998865
|
|
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=216.38 Aligned_cols=191 Identities=20% Similarity=0.269 Sum_probs=138.5
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||.++|++||++||++||+||+|+|+||+
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~id-p~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRIN-PELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcC-CCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 5899999999999999999999999999875 68999999999999 99999999999999999999999999999999
Q ss_pred cccCC--------------CCCccee--eccC----------CCCCCC------------------C-CCCCCcccCCC-
Q 018278 117 TAERK--------------DGRGIYC--IFEG----------GTSDDR------------------L-DWGPSFICRGD- 150 (358)
Q Consensus 117 ~~~~~--------------~~~~~~~--~~~~----------~~~~~~------------------~-~~~~~~~~~~~- 150 (358)
|.+++ .+..+|+ .|.+ |.++.. . -|...+.-...
T Consensus 95 ~~~~~~n~ww~dvl~~g~~S~y~~~Fdidw~~~~g~~llP~LG~~y~~~l~~g~l~l~~~~~g~~~~~y~d~~fPl~p~t 174 (879)
T PRK14511 95 AVGGPDNPWWWDVLEWGRSSPYADFFDIDWDSGEGKVLLPVLGDQYGEVLAAGELRLAFDDDGAFVLRYYDHRFPIAPGT 174 (879)
T ss_pred cCcCccCHHHHHHHHhCCCCCccCceeeeecCCCCceecCccCCcccchhhCCceEEeecCCCceEEEEcCccCCCCCCc
Confidence 98763 1122333 1211 000000 0 00000000000
Q ss_pred ------------------------------------------------------------------------CccC--CC
Q 018278 151 ------------------------------------------------------------------------KEYS--DG 156 (358)
Q Consensus 151 ------------------------------------------------------------------------~~~~--~~ 156 (358)
..|. +.
T Consensus 175 ~~~il~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~n~~~~~~~~~L~~ll~~Q~YRLa~Wr~a~~ 254 (879)
T PRK14511 175 YALILRHRLDLEALAAEFPALGELESILTAAQHLASPAVRAFIEQALAAFDGRKGDGRSRLDRLLERQHYRLASWRVADD 254 (879)
T ss_pred hhhhhhcchhHHHHHHHHhhhhcccchhhHHHhhcChHHHHHHHHHHHHhcCCCCchhhhHHHHHHhcceeccchhccCc
Confidence 0010 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC--CHHHHHHHHHhc-CCCeEEEeccC
Q 018278 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENT-SPDFAVGEKWD 230 (358)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~~~-~p~~~~gE~~~ 230 (358)
.-||........++-+.-++|+|.+..-..+..|+++=-|||+|+|++..+ |...++.+-+.. .|.+++.|-+-
T Consensus 255 eiNYRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~DP~~Yl~rLr~~~~~~~yivvEKIL 331 (879)
T PRK14511 255 EINYRRFFDVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGLADPRGYLRRLRRRTGRGAYIVVEKIL 331 (879)
T ss_pred ccCcceeecchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHhccCCCCeEEEEecc
Confidence 223333444467778888999999999999999999778999999999998 445777764443 35777777653
|
|
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-22 Score=209.10 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=76.2
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||.++|++||++||++||+||+|+|+||+
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id-p~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN-PEIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 6899999999999999999999999999964 68999999999999 99999999999999999999999999999999
Q ss_pred cc
Q 018278 117 TA 118 (358)
Q Consensus 117 ~~ 118 (358)
|.
T Consensus 833 ~~ 834 (1693)
T PRK14507 833 GV 834 (1693)
T ss_pred CC
Confidence 95
|
|
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-19 Score=169.77 Aligned_cols=80 Identities=23% Similarity=0.448 Sum_probs=76.2
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+=||....+.||||++|||.++|++||+.+. +.|||+|+|...|+ |.+|+.+.|.+||+++|++||.+|+|+|+|||
T Consensus 15 gFtF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~In-PeLGG~egl~rLvaalk~~GlGlI~DIVPNHM 93 (889)
T COG3280 15 GFTFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEIN-PELGGEEGLERLVAALKSRGLGLIVDIVPNHM 93 (889)
T ss_pred CCCHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccC-hhhcChHHHHHHHHHHHhcCCceEEEecccch
Confidence 3469999999999999999999999999875 58999999999999 99999999999999999999999999999999
Q ss_pred ccc
Q 018278 117 TAE 119 (358)
Q Consensus 117 ~~~ 119 (358)
+..
T Consensus 94 av~ 96 (889)
T COG3280 94 AVG 96 (889)
T ss_pred hcc
Confidence 987
|
|
| >TIGR01531 glyc_debranch glycogen debranching enzymye | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-18 Score=173.94 Aligned_cols=82 Identities=13% Similarity=0.280 Sum_probs=77.2
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCC-CCCCCCCCccccCCCCCCCCC----CHHHHHHHHHHHHHc-CCEEEEEee
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYG----SQADLKSLIQAFRQK-GIKCLADMV 112 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~G----t~~d~~~Lv~~~H~~-Gi~VilD~V 112 (358)
.|+|.+..++|++|++||+|.||++||++ +.+.+.|++.||+.|| |.|| +.+||++||+++|++ ||++|+|+|
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~id-P~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLN-QHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcC-hhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 59999999999999999999999999995 5578999999999999 9994 899999999999997 999999999
Q ss_pred cccccccCC
Q 018278 113 INHRTAERK 121 (358)
Q Consensus 113 ~NH~~~~~~ 121 (358)
+||||.+|+
T Consensus 207 ~NHTa~ds~ 215 (1464)
T TIGR01531 207 FNHTANNSP 215 (1464)
T ss_pred ecccccCCH
Confidence 999999874
|
glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground. |
| >PF14872 GHL5: Hypothetical glycoside hydrolase 5 | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=115.58 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=104.5
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHH---------------cCCCEEEeCCCCCCC----------------
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSN---------------AGITHVWLPPPSQSV---------------- 69 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~---------------LGv~~I~l~Pi~~~~---------------- 69 (358)
....-|+|+=.-... ..|+|.||++--..|.+ .|+++|+|+||=+..
T Consensus 176 ~~P~nILQiHv~TAs--p~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~ 253 (811)
T PF14872_consen 176 PAPRNILQIHVGTAS--PEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIR 253 (811)
T ss_pred CCCceeEEEecCCCC--CCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeec
Confidence 445678887642222 26999999876555532 699999999984411
Q ss_pred -----------------------------CCCCCCcc--ccCCCCCCCCCC--HHHHHHHHHHHHH---cCCEEEEEeec
Q 018278 70 -----------------------------APQGYMPG--RLYDLDASKYGS--QADLKSLIQAFRQ---KGIKCLADMVI 113 (358)
Q Consensus 70 -----------------------------~~~gY~~~--d~~~id~~~~Gt--~~d~~~Lv~~~H~---~Gi~VilD~V~ 113 (358)
.+|||++. -.-+++|.-++| ++|+-++|+++|. ..|+||+|+|+
T Consensus 254 ~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVy 333 (811)
T PF14872_consen 254 PEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVY 333 (811)
T ss_pred ccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeec
Confidence 24788753 334555334455 8999999999998 67999999999
Q ss_pred ccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
.|.-+....- .. ..+..+ ...|+ -|||+.||.||..+.+.-+.=++
T Consensus 334 GHADNQ~~~L------Ln-----------~~flkG-PnMYG---------------Qdlnhq~P~VRAILLEmQRRK~n- 379 (811)
T PF14872_consen 334 GHADNQALDL------LN-----------RRFLKG-PNMYG---------------QDLNHQNPVVRAILLEMQRRKIN- 379 (811)
T ss_pred ccccchhhHh------hh-----------hhhccC-Ccccc---------------ccccccChHHHHHHHHHHHhhcc-
Confidence 9986653210 00 001111 01111 13999999999999999998887
Q ss_pred cCCCeEeeccCCCC
Q 018278 194 IGFDGWRFDFVKGY 207 (358)
Q Consensus 194 ~gvDGfR~D~a~~i 207 (358)
+|+||+|+|.+..+
T Consensus 380 ~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 380 TGADGIRVDGGQDF 393 (811)
T ss_pred cCCceeEecccccc
Confidence 99999999999765
|
|
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=102.85 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=80.1
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCC------HHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGS------QADLK 94 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt------~~d~~ 94 (358)
.+++-+|+.. ..--|.+....++|..++++|+|.|+++|+++-. +...|++.|...+| |.+.. .++++
T Consensus 5 ld~i~iQTvl----sk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~-~~~~~~~~~~~~~~v~ 79 (423)
T PF14701_consen 5 LDSISIQTVL----SKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFD-PDFFPPGKESTFEDVK 79 (423)
T ss_pred CcceEEEEEh----hhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcC-hhhcCCCccccHHHHH
Confidence 3456666553 1114889999999999999999999999999864 46789999999999 87754 47999
Q ss_pred HHHHHHH-HcCCEEEEEeecccccccCC
Q 018278 95 SLIQAFR-QKGIKCLADMVINHRTAERK 121 (358)
Q Consensus 95 ~Lv~~~H-~~Gi~VilD~V~NH~~~~~~ 121 (358)
++|++++ +.||.+|.|+|+|||+.+++
T Consensus 80 ~~v~~~~~~~~ll~~~DvV~NHtA~nS~ 107 (423)
T PF14701_consen 80 EFVKEAEKKYGLLSMTDVVLNHTANNSP 107 (423)
T ss_pred HHHHHHHHHcCceEEEEEeeccCcCCCh
Confidence 9999995 79999999999999999876
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=98.87 Aligned_cols=170 Identities=22% Similarity=0.314 Sum_probs=103.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEeeccCCCCCHHHHHHH---HHh----------cCC
Q 018278 164 EDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITKVY---MEN----------TSP 221 (358)
Q Consensus 164 ~~~~~~~dln~~n~~v~~~l~~~~~~w~~---------~~gvDGfR~D~a~~i~~~~~~~~---~~~----------~~p 221 (358)
..+.--.|+|-+||.|+.+.+.|+.|+++ +..+||||+||+.+++.+.+... .++ ...
T Consensus 138 yEfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~ 217 (809)
T PF02324_consen 138 YEFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANK 217 (809)
T ss_dssp -S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCT
T ss_pred ceeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhh
Confidence 34555668999999999999999999998 56699999999999998876443 222 123
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC------chhhhhhcC-C-CCCC
Q 018278 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG------ELWRLKDSN-G-KPPG 293 (358)
Q Consensus 222 ~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~------~~~~~~~~~-~-~~~~ 293 (358)
-+.|=|.|+.. -..|+...+.....+|+.++..+..++.. .+..+.... . +...
T Consensus 218 HlSilE~ws~n------------------d~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d 279 (809)
T PF02324_consen 218 HLSILEAWSSN------------------DPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSND 279 (809)
T ss_dssp C--EESSSTTT------------------HHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE
T ss_pred hheeeeccccC------------------ChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccC
Confidence 57788999641 12677777777778999998888887733 233333211 1 1111
Q ss_pred ccCCCCCceeecccCCCCCc-----------Cc---CCC-----------------------CCCcchHHHHHHHHHcC-
Q 018278 294 FIGILPQNAVTFIDNHDTGS-----------TQ---RLW-----------------------PFPSDKVMLGYAYILTH- 335 (358)
Q Consensus 294 ~~~~~~~~~v~f~~nHD~~r-----------~~---~~~-----------------------~~~~~~~~~a~a~l~~~- 335 (358)
..........+||.+||..- +. .-+ .+..-.+..|+|+||+-
T Consensus 280 ~~en~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNK 359 (809)
T PF02324_consen 280 STENEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNK 359 (809)
T ss_dssp --SSESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-S
T ss_pred CcCCcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCC
Confidence 11112234568999999831 00 000 01222456799999996
Q ss_pred CCeeeeecCccccCCC
Q 018278 336 PGTPCIVISVTYPLFH 351 (358)
Q Consensus 336 pG~P~IyyGdE~G~~~ 351 (358)
..+|.|||||.|-..+
T Consensus 360 DTVPRVYYGDLYtDdG 375 (809)
T PF02324_consen 360 DTVPRVYYGDLYTDDG 375 (809)
T ss_dssp SSEEEEEHHHHBESSS
T ss_pred CCCceEEecccccccc
Confidence 6999999999885443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=92.52 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=82.6
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+-+.+.+.|+.|+++|+|+|.+-=-..... ..-+.+..-+... ...+ +.|=|+.+|++||++||+|..=+.+...
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g-~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~ 95 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTG-KQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFN 95 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCC-CCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecC
Confidence 467888999999999999999753211110 0112221111111 1222 3678999999999999999998855543
Q ss_pred cccCCC---CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 117 TAERKD---GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 117 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
+..... ....|..- ...+|.. .+.+. .....-||-.+|+||+++++.++..++.
T Consensus 96 ~~~~~~~~~~~p~~~~~------~~~~~~~--------~~~~~---------~~~~~~lnP~~PeVr~~i~~~v~Eiv~~ 152 (311)
T PF02638_consen 96 APDVSHILKKHPEWFAV------NHPGWVR--------TYEDA---------NGGYYWLNPGHPEVRDYIIDIVKEIVKN 152 (311)
T ss_pred CCchhhhhhcCchhhee------cCCCcee--------ecccC---------CCCceEECCCCHHHHHHHHHHHHHHHhc
Confidence 321100 00001000 0001100 00000 0111129999999999999999999999
Q ss_pred cCCCeEeecc
Q 018278 194 IGFDGWRFDF 203 (358)
Q Consensus 194 ~gvDGfR~D~ 203 (358)
|.|||+.+|-
T Consensus 153 YdvDGIhlDd 162 (311)
T PF02638_consen 153 YDVDGIHLDD 162 (311)
T ss_pred CCCCeEEecc
Confidence 9999999994
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.9e-09 Score=100.63 Aligned_cols=96 Identities=26% Similarity=0.407 Sum_probs=63.7
Q ss_pred CCceEEEeeecCC---CC-CCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC---------CCCCCccccCCCC---CC
Q 018278 22 SPALLFQGFNWES---SN-KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---------PQGYMPGRLYDLD---AS 85 (358)
Q Consensus 22 ~~~v~~q~F~~~~---~~-~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---------~~gY~~~d~~~id---~~ 85 (358)
..+|||+.|- .. +. +..=+-.-|++..+-+|++|||..||.|-+.+.. ..||+-+|-|++. +.
T Consensus 563 DSqvIYEgFS-NFQ~~~t~~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~pt 641 (809)
T PF02324_consen 563 DSQVIYEGFS-NFQDFPTTPSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPT 641 (809)
T ss_dssp HT-EEEE----TTB---SSGGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-B
T ss_pred hcchhhcccc-ccccCCCChHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCC
Confidence 3489999993 11 10 1123457788899999999999999999998753 3699999999998 79
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+|||.+||+..|+++|+.||+||.|+|++.+-.
T Consensus 642 KYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 642 KYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp TTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 999999999999999999999999999998743
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.1e-07 Score=72.22 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=79.3
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCc
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 125 (358)
.+-+++||++|+++|-+.- .+-+..-|-|+...... |.++ .+-|+++|++||++||+|+.=+-++ .-..-.....
T Consensus 3 ~~~~~~lk~~~v~si~i~a--~~h~g~ayYPt~~~~~h-p~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA--KCHGGYAYYPTKVGPRH-PGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc--ccccEEEEccCCCCcCC-CCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCC
Confidence 3557899999999999752 11112335566666667 8888 8889999999999999998766655 2111111122
Q ss_pred ceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeecc
Q 018278 126 IYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (358)
Q Consensus 126 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (358)
+|..-.. |.+.....+ ...+...+..+++. ++++++.++..+++|.+|||=+|.
T Consensus 78 eW~~~~~~G~~~~~~~~-----------------------~~~~~~~~c~ns~Y-~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 78 EWFVRDADGRPMRGERF-----------------------GYPGWYTCCLNSPY-REFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ceeeECCCCCCcCCCCc-----------------------CCCCceecCCCccH-HHHHHHHHHHHHHcCCCCEEEecC
Confidence 3443221 111000000 00001113344454 489999999999999999998873
|
|
| >PRK14508 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-05 Score=75.12 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=43.2
Q ss_pred CCceEEEeeecCCCCCCCCchH-HHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCC
Q 018278 22 SPALLFQGFNWESSNKAGGWYN-SLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDL 82 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~-gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~i 82 (358)
..+|++|+|-- ...-|.|||- ++.+-++.+++.|++.|+|+|+.+.. +...|++.+-++.
T Consensus 6 ~~Gv~~~l~SL-~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~al 67 (497)
T PRK14508 6 KSGILLHITSL-PGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAG 67 (497)
T ss_pred ceEEEeccccC-CCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCccccccc
Confidence 34788999865 2223579995 99999999999999999999998753 1234554443333
|
|
| >COG1649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-06 Score=79.73 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=86.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCC----------CCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ----------GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~----------gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.+=..+.+.|+.|+.||||+|+..= ...++- ++.+. ...++ +.-|=|..+|++||++||+|+.
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV--~~~G~~lypS~~~p~s~~~~~-~~~~~----~g~DpLa~~I~~AHkr~l~v~a 133 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQV--WNDGDALYPSAVLPWSDGLPG-VLGVD----PGYDPLAFVIAEAHKRGLEVHA 133 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEE--ecCccccccccccccccCcCc-ccCCC----CCCChHHHHHHHHHhcCCeeee
Confidence 4446788889999999999999542 221211 11111 01122 3457789999999999999999
Q ss_pred EeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 110 DMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (358)
Q Consensus 110 D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~ 189 (358)
-+-+--++...+... .... .|... .+..+.+....+. ....=||-..|+||++|.+.+..
T Consensus 134 Wf~~~~~a~~~s~~~----~~~p-------~~~~~--~~~~~~~~~~~~~-------~~~~~ldPg~Pevq~~i~~lv~e 193 (418)
T COG1649 134 WFNPYRMAPPTSPLT----KRHP-------HWLTT--KRPGWVYVRHQGW-------GKRVWLDPGIPEVQDFITSLVVE 193 (418)
T ss_pred chhhcccCCCCChhH----hhCC-------CCccc--CCCCeEEEecCCc-------eeeeEeCCCChHHHHHHHHHHHH
Confidence 988777776542111 0000 01000 0000000000000 01112899999999999999999
Q ss_pred HHHhcCCCeEeeccCCCC
Q 018278 190 LKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 190 w~~~~gvDGfR~D~a~~i 207 (358)
.+..|.|||+.||---..
T Consensus 194 vV~~YdvDGIQfDd~fy~ 211 (418)
T COG1649 194 VVRNYDVDGIQFDDYFYY 211 (418)
T ss_pred HHhCCCCCceecceeecc
Confidence 999999999999986543
|
|
| >PLN02635 disproportionating enzyme | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00019 Score=70.55 Aligned_cols=57 Identities=11% Similarity=-0.000 Sum_probs=42.5
Q ss_pred CceEEEeeecCCCCCCCCchHHHH-hhhhhHHHcCCCEEEeCCCCCCC-----CCCCCCccccC
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLY 80 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~-~~L~yl~~LGv~~I~l~Pi~~~~-----~~~gY~~~d~~ 80 (358)
..|++|.|--.++ -|.|||-... +.++.+++.|.+.++|+|+.+.. +...|++.+-+
T Consensus 30 ~Gvll~l~SLps~-~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~f 92 (538)
T PLN02635 30 AGILLHPTSLPGP-YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDAN 92 (538)
T ss_pred eEEEEccccCCCC-CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCccccccc
Confidence 3799999965543 3469998765 78999999999999999998762 24455555433
|
|
| >cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.8e-05 Score=70.44 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=89.7
Q ss_pred CchHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 40 GWYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.+-+.+.+.++.+++.| ++.|||=.=+.. +|...| +..|+.+|-+ .++||+++|++|++|++-+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCC
Confidence 35677888899999999 777887654432 222233 4566357764 589999999999999999876 565
Q ss_pred ccCCCC----CcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 018278 118 AERKDG----RGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 192 (358)
Q Consensus 118 ~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~ 192 (358)
.+++.. ...|++... +.......|. ....-+|+.||++++...+.++.+++
T Consensus 92 ~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~------------------------g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 92 QKSPLFKEAAEKGYLVKKPDGSVWQWDLWQ------------------------PGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred CCchhHHHHHHCCeEEECCCCCeeeecccC------------------------CCcccccCCCHHHHHHHHHHHHHHHH
Confidence 544311 112222111 0000000000 11122899999999999999999988
Q ss_pred hcCCCeEeeccCCCCCHH
Q 018278 193 EIGFDGWRFDFVKGYAPS 210 (358)
Q Consensus 193 ~~gvDGfR~D~a~~i~~~ 210 (358)
.|||||-+|....+|.+
T Consensus 148 -~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 148 -MGVDCFKTDFGERIPTD 164 (308)
T ss_pred -hCCcEEecCCCCCCCcc
Confidence 99999999988766543
|
YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes. |
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00026 Score=76.52 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=39.4
Q ss_pred CceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCCCC
Q 018278 23 PALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQS 68 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~ 68 (358)
-.|++|.|--.+.++ |.|||.++.+.++.+++.|.+.|.|+|+.+.
T Consensus 725 ~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~ 771 (1221)
T PRK14510 725 CGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPL 771 (1221)
T ss_pred eEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 378999997666444 4699999999999999999999999998863
|
|
| >KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.8e-06 Score=81.56 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=73.5
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCC------CHHHHHHHHHHHHH-cCCEEEEE
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYG------SQADLKSLIQAFRQ-KGIKCLAD 110 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~G------t~~d~~~Lv~~~H~-~Gi~VilD 110 (358)
-|.|.....+|.-.|+.|+|.|+++|+++-. +..-|+..|-..++ +.+- +.+|.++||+.||+ -||--|-|
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~-~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELN-PDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcC-hhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 4788888999999999999999999999854 45679999999999 8776 79999999999987 79999999
Q ss_pred eecccccccCC
Q 018278 111 MVINHRTAERK 121 (358)
Q Consensus 111 ~V~NH~~~~~~ 121 (358)
+|+||++.+++
T Consensus 217 vV~NHtAnns~ 227 (1521)
T KOG3625|consen 217 VVYNHTANNSK 227 (1521)
T ss_pred hhhhccccCCc
Confidence 99999999874
|
|
| >PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.7e-05 Score=74.95 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=27.8
Q ss_pred CCCch-HHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCC
Q 018278 38 AGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLD 83 (358)
Q Consensus 38 ~~G~~-~gl~~~L~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id 83 (358)
|.||| .++.+-++.+++.|++.+.|.|+.+... ...|.+.+-+++|
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alN 61 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALN 61 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCC
Confidence 57999 9999999999999999999999997642 3378888877777
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A. |
| >cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00024 Score=65.62 Aligned_cols=134 Identities=15% Similarity=0.202 Sum_probs=84.1
Q ss_pred CchHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 40 GWYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
-+-+.|.+.++.++++| ++.|+|=.-+.. .. .| +..|+.+|-+ .++||+++|++|+|+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~--~~----g~-f~~d~~~FPd---p~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET--CY----GD-FDFDPTKFPD---PKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc--cC----Cc-cccChhhCCC---HHHHHHHHHHCCCeEEEEECC-eeC
Confidence 34678888888999988 567777532321 11 13 4455246754 789999999999999998887 454
Q ss_pred ccCCC----CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 118 AERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 118 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
.+++. ....|++-......+. . ..+.. ....-+|+.||++++...+.++.++.+
T Consensus 96 ~~s~~~~e~~~~g~~vk~~~g~~~~---~--------~~~w~-----------g~~~~~Dftnp~a~~w~~~~~~~~~~~ 153 (303)
T cd06592 96 TDSENFREAVEKGYLVSEPSGDIPA---L--------TRWWN-----------GTAAVLDFTNPEAVDWFLSRLKSLQEK 153 (303)
T ss_pred CCCHHHHhhhhCCeEEECCCCCCCc---c--------cceec-----------CCcceEeCCCHHHHHHHHHHHHHHHHH
Confidence 44321 0112222111000000 0 00000 011228999999999999999999966
Q ss_pred cCCCeEeeccCCC
Q 018278 194 IGFDGWRFDFVKG 206 (358)
Q Consensus 194 ~gvDGfR~D~a~~ 206 (358)
.|||||-+|....
T Consensus 154 ~Gvdg~w~D~~E~ 166 (303)
T cd06592 154 YGIDSFKFDAGEA 166 (303)
T ss_pred hCCcEEEeCCCCc
Confidence 9999999999764
|
Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0003 Score=66.83 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=81.7
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCC-CCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPS-QSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~-~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
-+.|.+.++.++++|++.+.|===+ .....+--..-|+ .+|+.+|- +-++.|++.+|++||+.-|=+-+--++.++
T Consensus 57 e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 57 EEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccchh
Confidence 4667777888999999988873222 1111110011232 23435664 359999999999999999999887776665
Q ss_pred CC--CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 121 KD--GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 121 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
+- ...+|....++.. . . ....+--||+++|+|++++.+.+..++++.|||.
T Consensus 134 ~l~~~hPdw~l~~~~~~----------------~-~----------~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidY 186 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRP----------------P-T----------LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDY 186 (394)
T ss_dssp CHCCSSBGGBTCCTTSE------------------E----------CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHhCccceeecCCCC----------------C-c----------CcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 41 1112221111000 0 0 0001112999999999999999999888899999
Q ss_pred EeeccCCCC
Q 018278 199 WRFDFVKGY 207 (358)
Q Consensus 199 fR~D~a~~i 207 (358)
|.+|.-..+
T Consensus 187 iK~D~n~~~ 195 (394)
T PF02065_consen 187 IKWDFNRDI 195 (394)
T ss_dssp EEEE-TS-T
T ss_pred EEeccccCC
Confidence 999997665
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A .... |
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=97.51 E-value=2.5e-05 Score=79.82 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=41.3
Q ss_pred eecccCCCCCcCcCCCCCC--------cchHHHHHHHHHcCCCeeeeecCcccc---CCCCCCCC
Q 018278 303 VTFIDNHDTGSTQRLWPFP--------SDKVMLGYAYILTHPGTPCIVISVTYP---LFHPLNVL 356 (358)
Q Consensus 303 v~f~~nHD~~r~~~~~~~~--------~~~~~~a~a~l~~~pG~P~IyyGdE~G---~~~~~n~~ 356 (358)
.+.+++||+.|+.+.+... ..+.+.+.++.||+||+|+||||+|++ ..+|.|+-
T Consensus 617 ~~lLds~dt~rfL~~~~~~~~~i~~~G~~nsLsq~lLklT~PGvPdIYqGtE~wd~slvDPDNRR 681 (825)
T TIGR02401 617 DAVLDPPAGSLFLTDFVAREKKLIPAGLQNSLSQTLLKLTAPGVPDIYQGTEFWDLSLVDPDNRR 681 (825)
T ss_pred HHHcCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCccC
Confidence 3468999998876655422 345677889999999999999999976 55777763
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0006 Score=63.35 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=76.4
Q ss_pred HHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 43 NSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
+.+.+.++.+++.|| ++|||-+=+... .+-.-.+ +..|+.+|- +.++||+++|++|+||++-+.+- ++.++
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~~ 101 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQDH 101 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccc--CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCCC
Confidence 567777888888775 788876432221 0100111 444524554 46799999999999999966544 33333
Q ss_pred CC----CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 018278 121 KD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAPDIDHLNPRVQKELSDWMNWLKTEIG 195 (358)
Q Consensus 121 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~n~~v~~~l~~~~~~w~~~~g 195 (358)
+. ....|++-..... .+..+..+. .-.-+|+.||++++...+.++..+.+.|
T Consensus 102 ~~y~e~~~~g~~v~~~~g~-----------------------~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G 158 (317)
T cd06599 102 PRYKELKEAGAFIKPPDGR-----------------------EPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG 158 (317)
T ss_pred HHHHHHHHCCcEEEcCCCC-----------------------CcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC
Confidence 20 0111221110000 000000000 0112899999999999999965544599
Q ss_pred CCeEeeccCC
Q 018278 196 FDGWRFDFVK 205 (358)
Q Consensus 196 vDGfR~D~a~ 205 (358)
||||=+|...
T Consensus 159 vdg~w~D~~E 168 (317)
T cd06599 159 IDSTWNDNNE 168 (317)
T ss_pred CcEEEecCCC
Confidence 9999999864
|
The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00029 Score=66.03 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=78.6
Q ss_pred chHHHHhhhhhHHHcCC--CEEEeCCCCCCCC-----CCCCCccc---cCCCCCCCCC---CHHHHHHHHHHHHHcCCEE
Q 018278 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVA-----PQGYMPGR---LYDLDASKYG---SQADLKSLIQAFRQKGIKC 107 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~-----~~gY~~~d---~~~id~~~~G---t~~d~~~Lv~~~H~~Gi~V 107 (358)
+-+.+.+.++.+++.|| ++|+|=+-..... +..|...| .+..++-+|- .-.+.++||+++|++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 46778888888888775 7888864221100 11121100 0011101110 1125799999999999999
Q ss_pred EEEeeccccccc-CCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHH
Q 018278 108 LADMVINHRTAE-RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDT--GEDFQPAPDIDHLNPRVQKELS 184 (358)
Q Consensus 108 ilD~V~NH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dln~~n~~v~~~l~ 184 (358)
++-+.+. +..+ ++. ...+..+..+.... .... +..+.... ........-+|+.||++++...
T Consensus 102 ~l~v~P~-i~~~~~~~-~~~~~~~~~~~~~g-------~~vk------~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~ 166 (340)
T cd06597 102 LLWQIPI-IKLRPHPH-GQADNDEDYAVAQN-------YLVQ------RGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWM 166 (340)
T ss_pred EEEecCc-cccccccc-cccchhHHHHHHCC-------EEEE------cCCCCccccccccCCCceeecCCCHHHHHHHH
Confidence 9865552 2211 110 00000010000000 0000 00000000 0011112239999999999999
Q ss_pred HHHHHHHHhcCCCeEeeccCCC
Q 018278 185 DWMNWLKTEIGFDGWRFDFVKG 206 (358)
Q Consensus 185 ~~~~~w~~~~gvDGfR~D~a~~ 206 (358)
+.++.+++++|||||-+|+...
T Consensus 167 ~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 167 EKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHhcCCcEEEecCCCc
Confidence 9999999779999999998754
|
CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF13200 DUF4015: Putative glycosyl hydrolase domain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00096 Score=61.24 Aligned_cols=135 Identities=18% Similarity=0.248 Sum_probs=84.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC----CHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG----SQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G----t~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
|+=+.+.+.|+.+++-|+|+|.|- -.+++|.-..+.-.......| ...|+++|+++||++||++|.=+|.=
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F- 84 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF- 84 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe-
Confidence 455667788999999999999874 234455322221111101222 25789999999999999999999862
Q ss_pred ccccCCCCCcceeeccCCCCC-CCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 116 RTAERKDGRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
++.... ...+|.- ...+...|.+..+ ..=+|--+++||+|+++.++..++ .
T Consensus 85 ---------------kD~~la~~~pe~av--~~~~G~~w~d~~~----------~~WvnP~~~evw~Y~i~IA~Eaa~-~ 136 (316)
T PF13200_consen 85 ---------------KDPVLAEAHPEWAV--KTKDGSVWRDNEG----------EAWVNPYSKEVWDYNIDIAKEAAK-L 136 (316)
T ss_pred ---------------cChHHhhhChhhEE--ECCCCCcccCCCC----------CccCCCCCHHHHHHHHHHHHHHHH-c
Confidence 110000 0111110 0111122322211 111888999999999999999997 9
Q ss_pred CCCeEeeccCCCC
Q 018278 195 GFDGWRFDFVKGY 207 (358)
Q Consensus 195 gvDGfR~D~a~~i 207 (358)
|+|.+.||-+..-
T Consensus 137 GFdEIqfDYIRFP 149 (316)
T PF13200_consen 137 GFDEIQFDYIRFP 149 (316)
T ss_pred CCCEEEeeeeecC
Confidence 9999999987644
|
|
| >PRK14582 pgaB outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0018 Score=65.38 Aligned_cols=150 Identities=16% Similarity=0.147 Sum_probs=85.4
Q ss_pred CCCceEEEe-----eecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHH-HH
Q 018278 21 TSPALLFQG-----FNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD-LK 94 (358)
Q Consensus 21 ~~~~v~~q~-----F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d-~~ 94 (358)
.+..+++|+ +. +.+ .-+-+.|...|+.|+++|+|+|+|--+....+ .|....-|| ++ ..+=..+| |-
T Consensus 311 ~~~~r~~h~dld~vyd-~dp---~qq~~~L~~lLdrlk~~G~ntV~lqafadp~g-d~~~~s~yf-P~-~~lp~r~d~f~ 383 (671)
T PRK14582 311 KSPQRVMHIDLDYVYD-ENP---QQQDRNIDVLIQRVKDMQISTVYLQAFADPDG-DGLVKELYF-PN-RLLPMRADLFN 383 (671)
T ss_pred CCCEEEEEeccccccC-CCH---HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCC-Ccccccccc-Cc-cccccccCCcC
Confidence 444678887 32 122 12468888999999999999999986655433 332222122 22 11111111 11
Q ss_pred H-HHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCC
Q 018278 95 S-LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDID 173 (358)
Q Consensus 95 ~-Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 173 (358)
. .-.-+|++|++|..-+.+--++-..+.+.........+..... ..| ...|+
T Consensus 384 ~~aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---------------~~rl~ 436 (671)
T PRK14582 384 RVAWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIH------------PEQ---------------YRRLS 436 (671)
T ss_pred HHHHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccC------------CCC---------------CcCCC
Confidence 1 1112899999999988665443211100000000000000000 001 11289
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
-.+|+||+.|.++...++..+.|||+-||-=
T Consensus 437 P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd 467 (671)
T PRK14582 437 PFDDRVRAQVGMLYEDLAGHAAFDGILFHDD 467 (671)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEeccc
Confidence 9999999999999999999889999999763
|
|
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0039 Score=68.66 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=38.6
Q ss_pred ceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCC
Q 018278 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPS 66 (358)
Q Consensus 24 ~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~ 66 (358)
+++.|.|--.|.++ |.|||..+.+.++.+++.|.+.|.|+|+.
T Consensus 174 G~~~qLYsLRS~~~~GIGDfgdL~~~~d~la~~Ga~~lqlnPLh 217 (1693)
T PRK14507 174 GLAAQLYGLRSARNWGIGDFGDLGRLVRDAALRGASFLGLSPLH 217 (1693)
T ss_pred EEEeeeeeeeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 79999997777665 46999999999999999999999999998
|
|
| >cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=61.61 Aligned_cols=138 Identities=17% Similarity=0.246 Sum_probs=82.5
Q ss_pred chHHHHhhhhhHHHcCC--CEEEeCCCCCC--CCCCCCCc-cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQS--VAPQGYMP-GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~--~~~~gY~~-~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+-+.+.+.++.+++.|| ++|||- .+.. ....||.. .+ +..|+.+|- +.++||+++|++|++|++-+. -+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-PY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-Cc
Confidence 67888888998888664 778885 3311 11223321 12 355534664 468999999999999999654 34
Q ss_pred ccccCCCC-----CcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 116 RTAERKDG-----RGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (358)
Q Consensus 116 ~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~ 189 (358)
+..+++.. ...|++-.. +.+....-| . ....-+|+.||++++...+.++.
T Consensus 95 v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w-------------~-----------g~~~~~Dftnp~a~~ww~~~~~~ 150 (317)
T cd06594 95 LADDGPLYYEEAKDAGYLVKDADGSPYLVDFG-------------E-----------FDCGVLDLTNPAARDWFKQVIKE 150 (317)
T ss_pred eecCCchhHHHHHHCCeEEECCCCCeeeeccC-------------C-----------CCceeeecCCHHHHHHHHHHHHH
Confidence 44332210 011111110 000000000 0 01123899999999999999988
Q ss_pred HHHhcCCCeEeeccCCCCC
Q 018278 190 LKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 190 w~~~~gvDGfR~D~a~~i~ 208 (358)
.+.+.|||||=+|+-..++
T Consensus 151 ~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 151 MLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HhhhcCCcEEEecCCCCCC
Confidence 7555999999999876543
|
Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. |
| >cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=60.63 Aligned_cols=132 Identities=12% Similarity=0.149 Sum_probs=76.2
Q ss_pred chHHHHhhhhhHHHc--CCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNA--GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~L--Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++. -++.|+|=--+- ...++ . -|+.|+.+|-. .++||+++|++|+||++-+.+ +++.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~--~~~~~--~-~f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~P-~v~~ 92 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYW--PKQGW--G-EWKFDPERFPD---PKAMVRELHEMNAELMISIWP-TFGP 92 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhh--cCCCc--e-eEEEChhhCCC---HHHHHHHHHHCCCEEEEEecC-CcCC
Confidence 567777888877765 567787742111 11221 2 24455346654 578999999999999996543 3544
Q ss_pred cCCC----CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 119 ERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 119 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
+++. ....|++-..........| -....-+|+.||++++...+.++..+.+.
T Consensus 93 ~~~~y~e~~~~g~~v~~~~g~~~~~~w------------------------~g~~~~~Dftnp~a~~w~~~~~~~~~~~~ 148 (319)
T cd06591 93 ETENYKEMDEKGYLIKTDRGPRVTMQF------------------------GGNTRFYDATNPEAREYYWKQLKKNYYDK 148 (319)
T ss_pred CChhHHHHHHCCEEEEcCCCCeeeeeC------------------------CCCccccCCCCHHHHHHHHHHHHHHhhcC
Confidence 3321 0111221110000000000 01112399999999999888776544449
Q ss_pred CCCeEeeccCC
Q 018278 195 GFDGWRFDFVK 205 (358)
Q Consensus 195 gvDGfR~D~a~ 205 (358)
|||||=+|...
T Consensus 149 Gvdg~w~D~~E 159 (319)
T cd06591 149 GVDAWWLDAAE 159 (319)
T ss_pred CCcEEEecCCC
Confidence 99999999976
|
XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes. |
| >PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0062 Score=60.31 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=76.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCC-CCCCCCCc----cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMP----GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~----~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+.....+.|+.|+..-||+|+.==.+-. ....+-.. ..+.++- -|-=..+-+|++|++||+.||+.|.=.-+.-
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~-~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiya 194 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWA-NRQISTSTVKDYINAAHKYGMKAMAYNMIYA 194 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT---EEEHHHHHHHHHHHHHTT-EEEEEEESSE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhc-CCEehHHHHHHHHHHHHHcCcceehhHhhhc
Confidence 5677788899999999999996321110 00000000 1122233 2333478899999999999999998765543
Q ss_pred ccccCC--CCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 116 RTAERK--DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 116 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
...+-. .-...|..|.+..... +..... . ..|. +.+-=.|..|++=|++|.+.+...++.
T Consensus 195 a~~~~~~~gv~~eW~ly~d~~~~~---~~~~~l-~--~~w~------------s~lyl~dP~N~~WQ~yI~~q~~~~~~~ 256 (559)
T PF13199_consen 195 ANNNYEEDGVSPEWGLYKDDSHSN---QDTYDL-P--DGWP------------SDLYLMDPGNPEWQNYIINQMNKAIQN 256 (559)
T ss_dssp EETT--S--SS-GGBEEESSSBTS---B-EEEE-T--T-E--------------EEEEB-TT-HHHHHHHHHHHHHHHHH
T ss_pred cccCcccccCCchhhhhhccCCCc---cceeec-C--cccc------------cceEEecCCCHHHHHHHHHHHHHHHHc
Confidence 322211 1123465555422210 000000 0 0000 001127889999999999999999999
Q ss_pred cCCCeEeeccCCC
Q 018278 194 IGFDGWRFDFVKG 206 (358)
Q Consensus 194 ~gvDGfR~D~a~~ 206 (358)
+|+|||.+|....
T Consensus 257 ~gFDG~hlDq~G~ 269 (559)
T PF13199_consen 257 FGFDGWHLDQLGN 269 (559)
T ss_dssp HT--EEEEE-S--
T ss_pred cCCceEeeeccCC
Confidence 9999999999864
|
|
| >cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0034 Score=58.34 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=78.8
Q ss_pred CchHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 40 GWYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.+-+.+.+.++.+++.+| +.|||-.=+. .+|. -|+.|+.+|- +.++||+++|++|+||++-+.+. ++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P~-i~ 89 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDPG-IR 89 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeecc-cc
Confidence 356778888888877664 6777753221 1232 2344523554 45799999999999999976544 33
Q ss_pred ccCCC------CCcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 018278 118 AERKD------GRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190 (358)
Q Consensus 118 ~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w 190 (358)
.++.. ....|+.-.. +.+..... |. + .-.-+|+.||++++...+.++..
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~------------w~-G-----------~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 90 VDQNYSPFLSGMDKGKFCEIESGELFVGKM------------WP-G-----------TTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred CCCCChHHHHHHHCCEEEECCCCCeEEEee------------cC-C-----------CccccCCCChHHHHHHHHHHHHH
Confidence 32110 0111211100 00000000 00 0 01128999999999999999988
Q ss_pred HHhcCCCeEeeccCCC
Q 018278 191 KTEIGFDGWRFDFVKG 206 (358)
Q Consensus 191 ~~~~gvDGfR~D~a~~ 206 (358)
+.+.|||||=+|....
T Consensus 146 ~~~~gvdg~w~D~~Ep 161 (317)
T cd06600 146 LNSQGVDGIWLDMNEP 161 (317)
T ss_pred hhcCCCceEEeeCCCC
Confidence 8669999999998764
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do |
| >PRK10426 alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.013 Score=59.59 Aligned_cols=137 Identities=19% Similarity=0.311 Sum_probs=77.7
Q ss_pred hHHHHhhhhhHHHcC--CCEEEeCCCCCCC--CCCCCCcc-ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 42 YNSLKNSIPDLSNAG--ITHVWLPPPSQSV--APQGYMPG-RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 42 ~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~--~~~gY~~~-d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
-+.+.+.++.+++.| +++|||- -+... ...|.... | +..|+.+|- +.++||+++|++|+||++-+-+. +
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERYP---QLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhCC---CHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 366778888888877 6889985 22211 11221111 1 234423443 46889999999999999987653 2
Q ss_pred cccCCC----CCcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 018278 117 TAERKD----GRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (358)
Q Consensus 117 ~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~ 191 (358)
..+++. ....|+.-.. +..... .+ +.+.. .-+|+.||++|+...+.++..+
T Consensus 294 ~~~~~~y~e~~~~gy~vk~~~g~~~~~-------------~~---------~~~~~--~~~Dftnp~ar~Ww~~~~~~~~ 349 (635)
T PRK10426 294 ASDGDLCEEAAEKGYLAKDADGGDYLV-------------EF---------GEFYA--GVVDLTNPEAYEWFKEVIKKNM 349 (635)
T ss_pred CCCCHHHHHHHHCCcEEECCCCCEEEe-------------Ee---------cCCCc--eeecCCCHHHHHHHHHHHHHHH
Confidence 222210 0011211110 000000 00 00001 1289999999999999886544
Q ss_pred HhcCCCeEeeccCCCCC
Q 018278 192 TEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 192 ~~~gvDGfR~D~a~~i~ 208 (358)
.+.|||||=.|.-..+|
T Consensus 350 ~~~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 350 IGLGCSGWMADFGEYLP 366 (635)
T ss_pred hhcCCCEEeeeCCCCCC
Confidence 44999999999866543
|
|
| >TIGR00217 malQ 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.041 Score=54.38 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=37.2
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCC
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQS 68 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~ 68 (358)
.-+|++|+|--.|. -|.|||-.++.. .+.+++.|....+|.|+.+.
T Consensus 15 ~~Gvll~l~SL~s~-~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~ 61 (513)
T TIGR00217 15 KSGILLQLYSLPSE-WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPA 61 (513)
T ss_pred ceEEEeccccCCCC-CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCC
Confidence 34799999976666 567999999854 68889988988889998874
|
This enzyme is known as amylomaltase and disproportionating enzyme. |
| >PRK10658 putative alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0047 Score=62.91 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCC----CCcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (358)
+.++||+++|++|+||++-+.+ +++.+++. ....|++-.. +....-..| .
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W------------~------------ 380 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKW------------Q------------ 380 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCchHHHHHHHCCeEEECCCCCEeeeeec------------C------------
Confidence 3578999999999999998655 34433320 0112221110 100000001 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC
Q 018278 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 167 ~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 208 (358)
....-+|+.||++|+...+.++.+++ .|||||-.|....+|
T Consensus 381 g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE~~p 421 (665)
T PRK10658 381 PGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGERIP 421 (665)
T ss_pred CCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCceee
Confidence 11222899999999999999999988 999999999765444
|
|
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.001 Score=68.67 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCeeeeecCccccC---CCCCCCC
Q 018278 327 LGYAYILTHPGTPCIVISVTYPL---FHPLNVL 356 (358)
Q Consensus 327 ~a~a~l~~~pG~P~IyyGdE~G~---~~~~n~~ 356 (358)
.+.++.||+||+|+||||+|+|+ .+|.|+-
T Consensus 705 aq~lLqlT~PGVPdIYqG~E~wd~slvDPDNRR 737 (879)
T PRK14511 705 AQTLLKLTSPGVPDVYQGTELWDFSLVDPDNRR 737 (879)
T ss_pred HHHHHHHCcCCCCcccCcccchhccCCCCCCCC
Confidence 35677799999999999999864 4888874
|
|
| >cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0099 Score=55.75 Aligned_cols=143 Identities=17% Similarity=0.267 Sum_probs=78.6
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.| ++.|||-.-+.. +|. -++.|+.+|-+.. -++||+++|++|+||++-+.+. +..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~---~f~~d~~~FPdp~-~~~mi~~L~~~G~k~~~~i~P~-v~~ 92 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR---DFTLDPVRFPGLK-MPEFVDELHANGQHYVPILDPA-ISA 92 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc----Ccc---ceecccccCCCcc-HHHHHHHHHHCCCEEEEEEeCc-ccc
Confidence 3567778888887766 467777432211 111 2334423443221 1899999999999999976543 332
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
+.. ...+..|.++..... ... +..+....+..+ ....-+|+.||++++...+.++.++++.|||
T Consensus 93 ~~~--~~~~~~~~e~~~~g~-------~v~------~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvd 157 (339)
T cd06602 93 NEP--TGSYPPYDRGLEMDV-------FIK------NDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFD 157 (339)
T ss_pred CcC--CCCCHHHHHHHHCCe-------EEE------CCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCc
Confidence 210 011212221110000 000 000000000000 0011279999999999999999888878999
Q ss_pred eEeeccCCCC
Q 018278 198 GWRFDFVKGY 207 (358)
Q Consensus 198 GfR~D~a~~i 207 (358)
||=+|.....
T Consensus 158 g~w~D~~Ep~ 167 (339)
T cd06602 158 GLWIDMNEPS 167 (339)
T ss_pred EEEecCCCCc
Confidence 9999987643
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of |
| >PF14488 DUF4434: Domain of unknown function (DUF4434) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.014 Score=48.80 Aligned_cols=87 Identities=13% Similarity=0.218 Sum_probs=59.8
Q ss_pred ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK 103 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~ 103 (358)
++++|.+.||. .. .=+-+...+.+.+++++||++|.|. ...-...-+.+..++.-. -..+..+-+..+.++|.+.
T Consensus 3 GtF~q~~~~d~-~~-~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~-~~~~~~d~l~~~L~~A~~~ 77 (166)
T PF14488_consen 3 GTFLQPWSWDI-HQ-NWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGG-FYMPPVDLLEMILDAADKY 77 (166)
T ss_pred eEEEccccchh-hc-CCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCcc-ccCCcccHHHHHHHHHHHc
Confidence 57788877765 21 1234777899999999999999987 222112223344442222 3336678899999999999
Q ss_pred CCEEEEEeeccc
Q 018278 104 GIKCLADMVINH 115 (358)
Q Consensus 104 Gi~VilD~V~NH 115 (358)
||+|++-+-++.
T Consensus 78 Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 78 GMKVFVGLYFDP 89 (166)
T ss_pred CCEEEEeCCCCc
Confidence 999999877663
|
|
| >cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0099 Score=55.26 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=78.5
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCC-C-CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSV-A-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~-~-~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+-+.+.+.++.+++.| +++|+|-.=+-.. . ...|. + |+.|+.+|-+ .++||+++|++|++|++-+.+- +
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P~-v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEPF-V 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcCc-c
Confidence 4577788888887766 5777776432110 0 01111 2 4455456654 4789999999999999987543 3
Q ss_pred cccCCCC----CcceeeccC--CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 018278 117 TAERKDG----RGIYCIFEG--GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190 (358)
Q Consensus 117 ~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w 190 (358)
+.+++.. ...|...+. +.+....-| .+ ...-+|+.||++++...+.++.+
T Consensus 95 ~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w-------------~g-----------~~~~~Dftnp~a~~w~~~~~~~~ 150 (317)
T cd06598 95 LKNSKNWGEAVKAGALLKKDQGGVPTLFDFW-------------FG-----------NTGLIDWFDPAAQAWFHDNYKKL 150 (317)
T ss_pred cCCchhHHHHHhCCCEEEECCCCCEeeeecc-------------CC-----------CccccCCCCHHHHHHHHHHHHHh
Confidence 3333210 011111010 000000000 00 11128889999999999999988
Q ss_pred HHhcCCCeEeeccCC
Q 018278 191 KTEIGFDGWRFDFVK 205 (358)
Q Consensus 191 ~~~~gvDGfR~D~a~ 205 (358)
.+ .|||||=+|...
T Consensus 151 ~~-~Gvdg~w~D~~E 164 (317)
T cd06598 151 ID-QGVTGWWGDLGE 164 (317)
T ss_pred hh-CCccEEEecCCC
Confidence 66 999999999975
|
CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PRK11052 malQ 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.023 Score=58.06 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=38.6
Q ss_pred ceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCCC
Q 018278 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67 (358)
Q Consensus 24 ~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~ 67 (358)
+|++|.|--.|..+ |.|||..+.+-++.+++.|.+.+.|+|+..
T Consensus 145 Gv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 145 GACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred EEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 79999997776544 469999999999999999999999999983
|
|
| >cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=55.56 Aligned_cols=129 Identities=18% Similarity=0.259 Sum_probs=77.8
Q ss_pred chHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.|| ++|||-+-+.. +|.. +..|+.+|- +.++|++++|++|++|++-+.+ |+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~---f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRV---FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCc---eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 45777888888888775 77887644332 2321 345523664 3589999999999999987654 2322
Q ss_pred cCC------CCCcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 018278 119 ERK------DGRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (358)
Q Consensus 119 ~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~ 191 (358)
+.. .....|++... +.+.....| .+ ...-+|+.||++++...+.++.++
T Consensus 91 ~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w-------------~g-----------~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 91 DPGYDVYEEGLENDYFVKDPDGELYIGRVW-------------PG-----------LSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred CCCChHHHHHHHCCeEEECCCCCEEEEEec-------------CC-----------CccccCCCChHHHHHHHHHHHHHh
Confidence 211 00011221110 000000000 00 011279999999999999999888
Q ss_pred HhcCCCeEeeccCC
Q 018278 192 TEIGFDGWRFDFVK 205 (358)
Q Consensus 192 ~~~gvDGfR~D~a~ 205 (358)
+ .|||||-+|...
T Consensus 147 ~-~Gvdg~w~D~~E 159 (339)
T cd06604 147 D-LGVDGIWNDMNE 159 (339)
T ss_pred h-CCCceEeecCCC
Confidence 6 999999999764
|
Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source. |
| >PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0078 Score=58.67 Aligned_cols=139 Identities=19% Similarity=0.379 Sum_probs=75.4
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.| +++|+|-.-+.. +|. + +..|+.+|- +.++|++.+|++|++|++-+.+. +..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P~-v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHPF-VSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEESE-EET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeecc-cCC
Confidence 4677777788777655 466666543222 122 2 345523554 67999999999999999998883 433
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
++. .+..|...... ++ ... +..+....+..+ ....-+|+.||++++...+.++.+++.+|||
T Consensus 110 ~~~----~~~~~~~~~~~---~~---~v~-------~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd 172 (441)
T PF01055_consen 110 DSP----DYENYDEAKEK---GY---LVK-------NPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVD 172 (441)
T ss_dssp TTT----B-HHHHHHHHT---T----BEB-------CTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-S
T ss_pred CCC----cchhhhhHhhc---Cc---eee-------cccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCc
Confidence 322 01111110000 00 000 000000000000 0011288999999999999999999977999
Q ss_pred eEeeccCCCC
Q 018278 198 GWRFDFVKGY 207 (358)
Q Consensus 198 GfR~D~a~~i 207 (358)
||-+|.....
T Consensus 173 g~w~D~~E~~ 182 (441)
T PF01055_consen 173 GWWLDFGEPS 182 (441)
T ss_dssp EEEEESTTTB
T ss_pred eEEeecCCcc
Confidence 9999995444
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A .... |
| >cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.04 Score=49.44 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (358)
+.+..++.|+.+|++|+||++=+--+|.+...
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------------------------ 80 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------------------------ 80 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc------------------------------------------------
Confidence 46889999999999999999987655443210
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 169 ~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
-...+++-++.+.+.+..+++.+|+||+=+|-=
T Consensus 81 ---~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 81 ---ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHhCCCceEEeee
Confidence 011245566777777777777899999999963
|
The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B. |
| >cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.082 Score=49.82 Aligned_cols=125 Identities=13% Similarity=0.169 Sum_probs=73.9
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCC------CCCCCCHHHHHHHHHHHHHcCCEEEEEe-ecc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD------ASKYGSQADLKSLIQAFRQKGIKCLADM-VIN 114 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id------~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~-V~N 114 (358)
...|.+.++.++...+|.+++- +... ..+.+.+..|=.+. +..+=|.+|+++||+-|.++||.||-.+ ++.
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~H-ltDd-~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PG 94 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWH-ITDS-QSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPG 94 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEe-EEcC-CCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCch
Confidence 6777888899999999999874 1111 11222222221111 0112289999999999999999999999 788
Q ss_pred cccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 115 HRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 115 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
|+..-..... . ..+.....+...+.. ...-.||..+|++.+++.+++..+++-+
T Consensus 95 H~~a~~~~~p-------~------------l~~~~~~~~~~~~~~-------~~~~~L~~~~~~t~~fl~~vl~E~~~lF 148 (348)
T cd06562 95 HTGSWGQGYP-------E------------LLTGCYAVWRKYCPE-------PPCGQLNPTNPKTYDFLKTLFKEVSELF 148 (348)
T ss_pred hhHHHHHhCh-------h------------hhCCCCccccccccC-------CCCccccCCChhHHHHHHHHHHHHHHhc
Confidence 8865321000 0 000000000000000 0011289999999999999999998844
|
The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in |
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.048 Score=50.63 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=36.7
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
.+.++.||+.|+|+|-|=- +..|.. .-+-+.++..+|.++|++.||+|+||+=+..
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD 82 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSD 82 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSS
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecccC
Confidence 3568899999999998853 222222 1234577899999999999999999985543
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.053 Score=56.12 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccccCCCC----CcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCC-
Q 018278 93 LKSLIQAFRQKGIKCLADMVINHRTAERKDG----RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ- 167 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (358)
.+.|++++|++|||+|.=+-+. ...+++.. ...|+.-. ..+.......+.
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~e~~~~Gy~~k~------------------------~~g~~~~~~~w~~ 377 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPY-IKQDSPLFKEAIEKGYFVKD------------------------PDGEIYQADFWPG 377 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccc-cccCCchHHHHHHCCeEEEC------------------------CCCCEeeecccCC
Confidence 4599999999999999988765 32333210 01121100 001111111111
Q ss_pred CCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEeeccCCCCC
Q 018278 168 PAPDIDHLNPRVQKELSD-WMNWLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 168 ~~~dln~~n~~v~~~l~~-~~~~w~~~~gvDGfR~D~a~~i~ 208 (358)
..+-+|+.||++|+.-.+ ..+.+++ +|||||-.|.....+
T Consensus 378 ~~a~~DFtnp~~r~Ww~~~~~~~l~d-~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 378 NSAFPDFTNPDAREWWASDKKKNLLD-LGVDGFWNDMNEPEP 418 (772)
T ss_pred cccccCCCCHHHHHHHHHHHHhHHHh-cCccEEEccCCCCcc
Confidence 233389999999999994 5567887 999999999976553
|
|
| >cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.044 Score=50.32 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=72.3
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCC-----CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSV-----APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~-----~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+-+.+.+-++.+++.| +++|||=.=+... ...+|. -++.|+.+|- |.++||+++|++|+|||+-+-+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeCC
Confidence 5677777788777655 5677763211110 011222 2445534664 4589999999999999998876
Q ss_pred ccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
.. +.+.. ...|..+..+.. . ....+ ...-+|+.||+.++...+.++.-+..
T Consensus 97 ~~-~~~~~--~~~y~~~~~~~~-----------~----~~~~~-----------~~~~~D~tnp~a~~~w~~~~~~~~~~ 147 (292)
T cd06595 97 AD-GIRAH--EDQYPEMAKALG-----------V----DPATE-----------GPILFDLTNPKFMDAYFDNVHRPLEK 147 (292)
T ss_pred Cc-ccCCC--cHHHHHHHHhcC-----------C----CcccC-----------CeEEecCCCHHHHHHHHHHHHHHHHh
Confidence 43 22110 001111111000 0 00000 00127999999998776666544444
Q ss_pred cCCCeEeeccC
Q 018278 194 IGFDGWRFDFV 204 (358)
Q Consensus 194 ~gvDGfR~D~a 204 (358)
.|||||=.|..
T Consensus 148 ~Gidg~W~D~~ 158 (292)
T cd06595 148 QGVDFWWLDWQ 158 (292)
T ss_pred cCCcEEEecCC
Confidence 99999999964
|
Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.023 Score=51.42 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=49.0
Q ss_pred ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCC-ccccCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM-PGRLYDLDASKYGSQADLKSLIQAFRQ 102 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~-~~d~~~id~~~~Gt~~d~~~Lv~~~H~ 102 (358)
.|-.+.|+.. . ..-.-..+-++.++++|+++|-|.-.++. +. +..-+.++ + ...+.|+++|+.|++
T Consensus 7 ~v~~~G~n~~-w----~~~~~~~~~~~~~~~~G~n~VRi~v~~~~-----~~~~~~~~~~~-~--~~~~~ld~~v~~a~~ 73 (281)
T PF00150_consen 7 PVNWRGFNTH-W----YNPSITEADFDQLKALGFNTVRIPVGWEA-----YQEPNPGYNYD-E--TYLARLDRIVDAAQA 73 (281)
T ss_dssp BEEEEEEEET-T----SGGGSHHHHHHHHHHTTESEEEEEEESTS-----TSTTSTTTSBT-H--HHHHHHHHHHHHHHH
T ss_pred eEEeeeeecc-c----CCCCCHHHHHHHHHHCCCCEEEeCCCHHH-----hcCCCCCcccc-H--HHHHHHHHHHHHHHh
Confidence 4556666533 1 11125566799999999999999765322 11 00000122 1 236889999999999
Q ss_pred cCCEEEEEeecc
Q 018278 103 KGIKCLADMVIN 114 (358)
Q Consensus 103 ~Gi~VilD~V~N 114 (358)
+||+||+|+--.
T Consensus 74 ~gi~vild~h~~ 85 (281)
T PF00150_consen 74 YGIYVILDLHNA 85 (281)
T ss_dssp TT-EEEEEEEES
T ss_pred CCCeEEEEeccC
Confidence 999999996544
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A .... |
| >COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.32 Score=47.70 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=31.1
Q ss_pred ceEEEeeecCCCCC-CCCchHHHHhhhhh-HHHcCCCEEEeCCCCCC
Q 018278 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPD-LSNAGITHVWLPPPSQS 68 (358)
Q Consensus 24 ~v~~q~F~~~~~~~-~~G~~~gl~~~L~y-l~~LGv~~I~l~Pi~~~ 68 (358)
++-+|.+.-.+++. |.|||-.++-++.- +.+-|.+.+.|+|+...
T Consensus 15 g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~ 61 (520)
T COG1640 15 GSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHAT 61 (520)
T ss_pred cceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcc
Confidence 34444443334443 36999999988654 45999999999998753
|
|
| >PLN02950 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.075 Score=56.05 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=63.5
Q ss_pred cCCCCCCceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC------CCCCCccccCCCCCCCCCC
Q 018278 17 FLPFTSPALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA------PQGYMPGRLYDLDASKYGS 89 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~~Gt 89 (358)
.+.|-..+|++|.|--.+..+ |.|||.++.+.+|.+++.|.+.|+|+|+.+... +-.|.+.+-++++ |-|=+
T Consensus 256 ~~~~R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falN-PlyI~ 334 (909)
T PLN02950 256 EMPWRGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALH-PLYLR 334 (909)
T ss_pred CCCccceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccC-hhhcC
Confidence 355777899999997776653 469999999999999999999999999988642 2379999999999 98887
Q ss_pred HHHHH
Q 018278 90 QADLK 94 (358)
Q Consensus 90 ~~d~~ 94 (358)
.+++.
T Consensus 335 l~~l~ 339 (909)
T PLN02950 335 VQALS 339 (909)
T ss_pred HHHHH
Confidence 76663
|
|
| >cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB) | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.09 Score=49.36 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=76.5
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.| +++|||-.-+. .+|. .|+.|+.+|- +.++||+++|++|+||++-+.+--. .
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v~-~ 90 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHIK-R 90 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCcee-c
Confidence 4677778888787755 56777753221 1232 2455634665 4588999999999999998865432 2
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHH--hcC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKT--EIG 195 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~--~~g 195 (358)
+.. +..|..+.... + ...+ ..+.......+ ....-+|+.||++++...+.++..+. ..|
T Consensus 91 ~~~-----~~~y~e~~~~g---~----~vk~------~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g 152 (339)
T cd06603 91 DDG-----YYVYKEAKDKG---Y----LVKN------SDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTE 152 (339)
T ss_pred CCC-----CHHHHHHHHCC---e----EEEC------CCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCC
Confidence 110 00111100000 0 0000 00000000000 01122899999999999999998875 368
Q ss_pred CCeEeeccCC
Q 018278 196 FDGWRFDFVK 205 (358)
Q Consensus 196 vDGfR~D~a~ 205 (358)
+|||=+|...
T Consensus 153 ~~g~w~D~~E 162 (339)
T cd06603 153 NLYIWNDMNE 162 (339)
T ss_pred CceEEeccCC
Confidence 9999988753
|
Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae. |
| >KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.17 Score=51.62 Aligned_cols=135 Identities=21% Similarity=0.307 Sum_probs=79.4
Q ss_pred CchHHHHhhhhhHHHcCCC--EEEeCCCCCCCCCCCCC--ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 40 GWYNSLKNSIPDLSNAGIT--HVWLPPPSQSVAPQGYM--PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~--~I~l~Pi~~~~~~~gY~--~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+.+..+.+..++.+++||. .+|. +--|. -.|| .+|+..|++ ++++++.+|++|+|+|+=+-++-
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~--------DiDyMd~ykDF-Tvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVI--------DIDYMDGYKDF-TVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeee--------ehhhhhcccce-eeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5677788888888887774 4432 11122 3453 355467777 99999999999999977554331
Q ss_pred ccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 116 RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
.. +. .|..|+.+......--. .++... ..+..++ ..+=+|+.||++.....+.++..-++.
T Consensus 376 s~-~~-----~y~~y~~g~~~~v~I~~-----------~~g~~~-~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~v 437 (805)
T KOG1065|consen 376 ST-NS-----SYGPYDRGVAKDVLIKN-----------REGSPK-MLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEV 437 (805)
T ss_pred cc-Cc-----cchhhhhhhhhceeeec-----------ccCchh-hhcccCCCcccccccCCchHHHHHHHHHHhhcccC
Confidence 11 11 12223332211110000 000000 1111111 223388999999999999998888889
Q ss_pred CCCeEeeccC
Q 018278 195 GFDGWRFDFV 204 (358)
Q Consensus 195 gvDGfR~D~a 204 (358)
++|||-+|+-
T Consensus 438 p~dg~wiDmn 447 (805)
T KOG1065|consen 438 PFDGFWIDMN 447 (805)
T ss_pred CccceEEECC
Confidence 9999999993
|
|
| >PLN03236 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.096 Score=53.62 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=63.1
Q ss_pred CCCCCCceEEEeeecCCCCC-CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-----C-CCCCccccCCCCCCCCCCH
Q 018278 18 LPFTSPALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-----P-QGYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 18 ~~~~~~~v~~q~F~~~~~~~-~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-----~-~gY~~~d~~~id~~~~Gt~ 90 (358)
+.|-..+|++|+|--.+..+ |.|||-.+.+.++.+++.|.+.|+|+|+.+... + ..|++.+-++++ |-|=+.
T Consensus 57 ~~~R~aGill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlN-PlyIdl 135 (745)
T PLN03236 57 GAWKGSGMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALH-PLYLKL 135 (745)
T ss_pred cchhhheeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccC-hHHcCH
Confidence 56778899999997777654 469999999999999999999999999988642 2 479999999999 888776
Q ss_pred HHHH
Q 018278 91 ADLK 94 (358)
Q Consensus 91 ~d~~ 94 (358)
+.+.
T Consensus 136 e~L~ 139 (745)
T PLN03236 136 KELV 139 (745)
T ss_pred HHhh
Confidence 6553
|
|
| >cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex) | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.41 Score=44.72 Aligned_cols=126 Identities=15% Similarity=0.080 Sum_probs=74.3
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCC---------C--CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL---------D--ASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~i---------d--~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+.|.+.+|.++..++|.+++--. .. ..+...+..|=.+ . ...+=|.+|+++||+-|.++||.||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLt-D~-~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLT-DD-QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEee-cC-CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4677888889999999999998531 11 1122222211111 1 01223799999999999999999999
Q ss_pred Ee-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018278 110 DM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (358)
Q Consensus 110 D~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~ 188 (358)
.+ ++.|+..--.. |-.+... .+. ...... .-.....||..+|++.+++.+++.
T Consensus 94 EiD~PGH~~a~~~~----~p~l~~~------~~~--------~~~~~~--------~~~~~~~l~~~~~~t~~fl~~v~~ 147 (329)
T cd06568 94 EIDMPGHTNAALAA----YPELNCD------GKA--------KPLYTG--------IEVGFSSLDVDKPTTYEFVDDVFR 147 (329)
T ss_pred ecCCcHHHHHHHHh----ChhhccC------CCC--------Cccccc--------cCCCCcccCCCCHHHHHHHHHHHH
Confidence 98 77887642110 0001000 000 000000 000012389999999999999999
Q ss_pred HHHHhc
Q 018278 189 WLKTEI 194 (358)
Q Consensus 189 ~w~~~~ 194 (358)
.+++-+
T Consensus 148 E~~~~f 153 (329)
T cd06568 148 ELAALT 153 (329)
T ss_pred HHHHhC
Confidence 988743
|
SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. |
| >cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.35 Score=47.06 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=51.1
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCC----C--CCC---------CCCCCCCccccCCCCCCCC-------------CCHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPP----P--SQS---------VAPQGYMPGRLYDLDASKY-------------GSQAD 92 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~P----i--~~~---------~~~~gY~~~d~~~id~~~~-------------Gt~~d 92 (358)
+.+.|.+.+|.+.-..+|.++|-= - .+. .++.++...+...+- |.+ =|.+|
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~-~~~~~~~~~~~~~~g~YT~~d 98 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLL-PQLGSGPDTNNSGSGYYSRAD 98 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccc-cccccCcccCcccCCccCHHH
Confidence 467788888888888888888741 0 011 112222222222222 222 17999
Q ss_pred HHHHHHHHHHcCCEEEEEe-ecccccc
Q 018278 93 LKSLIQAFRQKGIKCLADM-VINHRTA 118 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~-V~NH~~~ 118 (358)
+++||+-|+++||.||-.+ ++.|+..
T Consensus 99 i~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 99 YIEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHHcCCEEEEccCCchhHHH
Confidence 9999999999999999998 7888865
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >COG3589 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.058 Score=49.23 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=38.5
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
....++-|+.-.+.|++-|..+=.......+ +-..-|++|++.||+.||+||+|+-+.
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~---------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE---------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred chhHHHHHHHHHHcCccceeeecccCCchHH---------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 3444455666677888888765332221111 123457999999999999999997654
|
|
| >PLN02763 hydrolase, hydrolyzing O-glycosyl compounds | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.085 Score=55.58 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
.||.||++|+.-.+.++.+++ .|||||=+|+-
T Consensus 304 pDFTnP~ar~WW~~~~k~l~d-~GVDG~W~Dmn 335 (978)
T PLN02763 304 PDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMN 335 (978)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCC
Confidence 689999999999999998888 99999999984
|
|
| >PRK09936 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.16 Score=45.74 Aligned_cols=172 Identities=14% Similarity=0.170 Sum_probs=94.0
Q ss_pred CCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCC-HHHHHHHH
Q 018278 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-QADLKSLI 97 (358)
Q Consensus 19 ~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-~~d~~~Lv 97 (358)
+.....++||-++-|+. =+-....+.+.-++++|+++|.+- ..+| -+ +.||+ ..-|.+++
T Consensus 18 ~~a~~g~F~Qp~n~d~~----~~~~qWq~~~~~~~~~G~~tLivQ-------Wt~y-------G~-~~fg~~~g~La~~l 78 (296)
T PRK09936 18 SQAMKGIFYQPQNRDSQ----VTDTQWQGLWSQLRLQGFDTLVVQ-------WTRY-------GD-ADFGGQRGWLAKRL 78 (296)
T ss_pred hhccccceeccccccCC----CCHHHHHHHHHHHHHcCCcEEEEE-------eeec-------cC-CCcccchHHHHHHH
Confidence 66788899998764432 124566777888999999999874 2233 23 45665 45689999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccC---CCCccCCCCCCCCCCCCCCCCCC-CC
Q 018278 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR---GDKEYSDGQGNDDTGEDFQPAPD-ID 173 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d-ln 173 (358)
++|++.||+|++=+-++-- |+.....+......|-...... ....|....+....+++++.-.| ++
T Consensus 79 ~~A~~~Gl~v~vGL~~Dp~----------y~q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~ 148 (296)
T PRK09936 79 AAAQQAGLKLVVGLYADPE----------FFMHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLN 148 (296)
T ss_pred HHHHHcCCEEEEcccCChH----------HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhc
Confidence 9999999999988765421 1110000000000000000000 00011111112223444444444 78
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCC------eEeeccCCCCCHHHHHHHHHhcCC
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFD------GWRFDFVKGYAPSITKVYMENTSP 221 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvD------GfR~D~a~~i~~~~~~~~~~~~~p 221 (358)
+..++-|+.+...+.-.+. .++ .+-.=....+.++.+..+++...+
T Consensus 149 W~~~~rR~~L~~~L~~~~~--~l~~~~kPv~ISay~~g~~sP~~l~~Wl~~l~~ 200 (296)
T PRK09936 149 WRDEARRQPLLTWLNAAQR--LIDVSAKPVHISAFFAGNMSPDGYRQWLEQLKA 200 (296)
T ss_pred ccCHHHHHHHHHHHHHHHH--hCCCCCCCeEEEeecccCCChHHHHHHHHHHhh
Confidence 8888888888888877765 333 222222234456666666555433
|
|
| >PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.066 Score=50.32 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=40.5
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+++...+-|...+++|++.|+.+=..+- + ..=-..+.|++|++.||++||+||+|+-+.
T Consensus 11 ~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe--------------~-~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 11 SSFEENKAYIEKAAKYGFKRIFTSLHIPE--------------D-DPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp S-HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCcCC--------------C-CHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 35777777788888999999987521111 1 111246889999999999999999998654
|
The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A. |
| >cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.48 Score=44.83 Aligned_cols=126 Identities=10% Similarity=0.020 Sum_probs=71.9
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCC------CCCCC------CCCCCccc-------cCCCCCC--CCCCHHHHHHHHHHH
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPP------SQSVA------PQGYMPGR-------LYDLDAS--KYGSQADLKSLIQAF 100 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi------~~~~~------~~gY~~~d-------~~~id~~--~~Gt~~d~~~Lv~~~ 100 (358)
.+.|.+.++.++..++|.+++--. +++++ ..+|...+ ..... + .+=|.+|++++|+-|
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~-~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGT-PYGGFYTQEEIREIVAYA 95 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCC-ccCceECHHHHHHHHHHH
Confidence 677778888999999999998421 01110 00111110 11111 1 122699999999999
Q ss_pred HHcCCEEEEEe-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 018278 101 RQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (358)
Q Consensus 101 H~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v 179 (358)
+++||.||-.+ ++.|+..--.. +-.+..... ...+ +. .......-||..+|++
T Consensus 96 ~~rgI~VIPEID~PGH~~a~l~~----~pel~~~~~--~~~~-----------~~---------~~~~~~~~L~~~~~~t 149 (357)
T cd06563 96 AERGITVIPEIDMPGHALAALAA----YPELGCTGG--PGSV-----------VS---------VQGVVSNVLCPGKPET 149 (357)
T ss_pred HHcCCEEEEecCCchhHHHHHHh----CccccCCCC--CCcc-----------cc---------ccCcCCCccCCCChhH
Confidence 99999999998 78888643110 000000000 0000 00 0000011289999999
Q ss_pred HHHHHHHHHHHHHhc
Q 018278 180 QKELSDWMNWLKTEI 194 (358)
Q Consensus 180 ~~~l~~~~~~w~~~~ 194 (358)
.+++.+.+..+++-+
T Consensus 150 ~~f~~~ll~E~~~lF 164 (357)
T cd06563 150 YTFLEDVLDEVAELF 164 (357)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999888733
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.18 Score=47.06 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=71.3
Q ss_pred chHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-..+.+.++.+++.+ +++|||=.=+. .+|. .|+.|+.+|-++ ++|++++|++|++|++-+.+- +..
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i~~ 90 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-ISY 90 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-eec
Confidence 4566777777776655 57777654222 1232 245553466554 789999999999998876542 110
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
...|. +.+. . .|+.||++|+.-.+..+.+.+ .||||
T Consensus 91 -------------------g~~~~-------------~~~~---------~--pDftnp~ar~wW~~~~~~l~~-~Gv~~ 126 (332)
T cd06601 91 -------------------GGGLG-------------SPGL---------Y--PDLGRPDVREWWGNQYKYLFD-IGLEF 126 (332)
T ss_pred -------------------CccCC-------------CCce---------e--eCCCCHHHHHHHHHHHHHHHh-CCCce
Confidence 00110 0000 1 688999999998888888887 89999
Q ss_pred EeeccC
Q 018278 199 WRFDFV 204 (358)
Q Consensus 199 fR~D~a 204 (358)
|=.|+.
T Consensus 127 ~W~Dmn 132 (332)
T cd06601 127 VWQDMT 132 (332)
T ss_pred eecCCC
Confidence 999975
|
GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes. |
| >cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.19 Score=46.47 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=73.9
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCC---------C-CCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL---------D-ASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~i---------d-~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
+...|.+.++.++..++|.++|-= ... ..+.+....|=.+ . +..+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl-~D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHL-TDD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEee-ecC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 467788889999999999998741 111 0122221111111 1 012337899999999999999999999
Q ss_pred e-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 111 M-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (358)
Q Consensus 111 ~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~ 189 (358)
+ ++.|+..--..... ... . +.....+. .....||..+|++.+++.+.+..
T Consensus 92 iD~PGH~~a~~~~~p~----l~~--~-----------~~~~~~~~------------~~~~~l~~~~~~t~~fl~~l~~e 142 (303)
T cd02742 92 IDMPGHSTAFVKSFPK----LLT--E-----------CYAGLKLR------------DVFDPLDPTLPKGYDFLDDLFGE 142 (303)
T ss_pred ccchHHHHHHHHhCHH----hcc--C-----------ccccCCCC------------CCCCccCCCCccHHHHHHHHHHH
Confidence 8 78888653110000 000 0 00000000 00112899999999999999999
Q ss_pred HHHhc
Q 018278 190 LKTEI 194 (358)
Q Consensus 190 w~~~~ 194 (358)
+++-+
T Consensus 143 ~~~lf 147 (303)
T cd02742 143 IAELF 147 (303)
T ss_pred HHHhC
Confidence 98843
|
These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself. |
| >cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.43 Score=44.53 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=73.9
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccc--------------------cCCCC-CCCCCCHHHHHHHHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR--------------------LYDLD-ASKYGSQADLKSLIQA 99 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d--------------------~~~id-~~~~Gt~~d~~~Lv~~ 99 (358)
+...|.+.++.++..++|.++|-= .. ++++.+.. ..... ...+=|.+|++++|+-
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHl-tD---~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 90 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHL-ND---NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAY 90 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEee-cC---CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHH
Confidence 467788888999999999999821 00 11111110 01111 0222389999999999
Q ss_pred HHHcCCEEEEEe-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 018278 100 FRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (358)
Q Consensus 100 ~H~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~ 178 (358)
|.++||.||-.+ ++.|+..--.. +.. ..+... ........||..+|+
T Consensus 91 A~~rgI~vIPEID~PGH~~a~~~~-------~pe------------l~~~~~-------------~~~~~~~~l~~~~~~ 138 (326)
T cd06564 91 AKDRGVNIIPEIDSPGHSLAFTKA-------MPE------------LGLKNP-------------FSKYDKDTLDISNPE 138 (326)
T ss_pred HHHcCCeEeccCCCcHHHHHHHHh-------hHH------------hcCCCc-------------ccCCCcccccCCCHH
Confidence 999999999988 78887653110 000 000000 000011128999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 018278 179 VQKELSDWMNWLKTEIG 195 (358)
Q Consensus 179 v~~~l~~~~~~w~~~~g 195 (358)
+.+++.+++...++-+.
T Consensus 139 t~~f~~~l~~E~~~~f~ 155 (326)
T cd06564 139 AVKFVKALFDEYLDGFN 155 (326)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999988655
|
Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >PRK11052 malQ 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.16 Score=52.10 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=37.2
Q ss_pred CchHHHHhhhhhHH--HcCCCEEE-eCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 40 GWYNSLKNSIPDLS--NAGITHVW-LPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 40 G~~~gl~~~L~yl~--~LGv~~I~-l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
|++..+++.+.... -+|++=|. +.|.-+. ....|.+.+-+.+| |-|=+.+++.++.
T Consensus 165 gdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~-~~SPYsp~Sr~alN-PlyI~~e~l~e~~ 223 (695)
T PRK11052 165 GDLKQMLEDVAKRGGDFIGLNPIHALYPANPE-SASPYSPSSRRWLN-VIYIDVNAVEDFQ 223 (695)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcCCCCCCC-CCCCcccccccccC-hHHcCHHHHhhhh
Confidence 56888877766332 24466666 3443322 46679999999999 8888877766653
|
|
| >cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.55 Score=43.30 Aligned_cols=115 Identities=9% Similarity=0.032 Sum_probs=72.4
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEe-ecccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA-SKYGSQADLKSLIQAFRQKGIKCLADM-VINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~-~~~Gt~~d~~~Lv~~~H~~Gi~VilD~-V~NH~~~ 118 (358)
+...|.+.++.++.+|+|.++|--- . .|....+-.+.+ ...=|.+|++++++-|.++||.||-.+ ++.|+..
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~-D-----~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYE-D-----TFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe-c-----ceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 4677888899999999999998320 0 011111111220 122279999999999999999999887 6777754
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG 195 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~g 195 (358)
--+.+ .+.... +. ... -.-||-.+|++.+.+.+.+...++-+.
T Consensus 89 ~l~~~--~~~~l~--------~~---------~~~---------------~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 89 ILKHP--EFRHLR--------EV---------DDP---------------PQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHhCc--cccccc--------cc---------CCC---------------CCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 21100 000000 00 000 011899999999999999999988443
|
GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.65 Score=43.00 Aligned_cols=124 Identities=13% Similarity=0.182 Sum_probs=73.1
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCC---C-CCCCCCHHHHHHHHHHHHHcCCEEEEEe-ecccc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL---D-ASKYGSQADLKSLIQAFRQKGIKCLADM-VINHR 116 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~i---d-~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~-V~NH~ 116 (358)
.+.|.+.|+.++..++|.+++- +.+. ..+.+.+..|=.+ . ...+=|.+|+++||+-|.++||.||-.+ ++.|+
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~H-ltDd-~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWH-LTDD-QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEE-EecC-CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 6778888999999999988874 1111 1122222222111 1 0123379999999999999999999998 78888
Q ss_pred cccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
..--.. |-.+... .... .. . ..+. ..-+-||..||++.+++.+++..+++-
T Consensus 95 ~a~~~~----ypel~~~-~~~~-~~------~--~~~~------------~~~~~l~~~~p~t~~f~~~l~~E~~~l 145 (311)
T cd06570 95 SAIAVA----YPELASG-PGPY-VI------E--RGWG------------VFEPLLDPTNEETYTFLDNLFGEMAEL 145 (311)
T ss_pred HHHHHh----CHHhccC-CCcc-cc------c--cccc------------cCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 652110 0000000 0000 00 0 0000 001138999999999999999988873
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
| >TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.55 Score=43.36 Aligned_cols=35 Identities=17% Similarity=0.453 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i 207 (358)
+++.+|+.++.+.+.+...++ .|+|||=+|.+..+
T Consensus 138 vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy 172 (315)
T TIGR01370 138 VKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAF 172 (315)
T ss_pred EecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhh
Confidence 889999999999999888877 89999999987654
|
Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases. |
| >COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.32 Score=43.78 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=35.0
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCCHHH---HHHHHHHHHHcCCEEEEEee
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD---LKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d---~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.+.-||.-||+.|.|= ++..| ...| + +--|...| ..++.+.|.+.||||++|+-
T Consensus 67 D~~~iLK~~GvNyvRlR-vwndP~dsng---------n-~yggGnnD~~k~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 67 DALQILKNHGVNYVRLR-VWNDPYDSNG---------N-GYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred HHHHHHHHcCcCeEEEE-EecCCccCCC---------C-ccCCCcchHHHHHHHHHHHHhcCcEEEeecc
Confidence 45788999999998874 33222 1111 1 22233334 44566788889999999973
|
|
| >cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.25 Score=46.80 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
..+|+.|+.+++.+..+++++|.||+-+|-=
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEccc
Confidence 3478899999888888888899999999974
|
Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase. |
| >cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD) | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.51 Score=43.73 Aligned_cols=64 Identities=27% Similarity=0.370 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCC
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 167 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (358)
.+.+.+++-|+.||++|+||++-+ +... . .
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG~~----------------------~---------------~-------- 86 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GGAN----------------------G---------------H-------- 86 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eCCC----------------------C---------------c--------
Confidence 356789999999999999999864 2110 0 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCC
Q 018278 168 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (358)
Q Consensus 168 ~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (358)
....+++-++.+.+.+..+++++|+||+=+|-=.
T Consensus 87 ----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 87 ----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 1134567788888888888888999999999743
|
ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. |
| >cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.47 Score=42.54 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
.+++.|+.+++.+..+++++|+||+=+|-=
T Consensus 79 ~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE 108 (253)
T cd06545 79 NDPAKRKALVDKIINYVVSYNLDGIDVDLE 108 (253)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCceeEEee
Confidence 478889999998888888899999999974
|
|
| >cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.6 Score=39.48 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=43.6
Q ss_pred CchHHHHhhhhhHHH--cCCCEEEeCCCCCCCCCCCCCcccc-CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 40 GWYNSLKNSIPDLSN--AGITHVWLPPPSQSVAPQGYMPGRL-YDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 40 G~~~gl~~~L~yl~~--LGv~~I~l~Pi~~~~~~~gY~~~d~-~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+-+.+.+.++.+++ +-+++|+|-+-+... | .++ +..|+.+|-+ .++||+++|++|++|++-+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFTFDWDAGKFPN---PKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----C--ceeeeecChhhCCC---HHHHHHHHHHCCCEEEEEeC
Confidence 467888888888877 455688886544332 1 121 2455346654 57899999999999999653
|
All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes |
| >PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3 | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.11 Score=48.83 Aligned_cols=136 Identities=16% Similarity=0.227 Sum_probs=74.3
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCC-----CCC----CCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD-----ASK----YGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id-----~~~----~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+.|.+.++.++.+++|.++|-- ... ..+.+....+-.+. ++. +=|.+|+++||+.|+++||+||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl-~D~-~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHL-SDD-QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEE-ESS-TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEE-ecC-CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 467888889999999999999852 111 11111111111000 011 3478999999999999999999999
Q ss_pred -ecccccccCCCCCcceeeccCCC-CCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 112 -VINHRTAERKDGRGIYCIFEGGT-SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (358)
Q Consensus 112 -V~NH~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~ 189 (358)
++.|++.--.. +-.+.... +.. ..+.. ..+ ....-..||..+|++.+++.+.+..
T Consensus 94 d~PGH~~~~l~~----~p~~~~~~~~~~-~~~~~-~~~-----------------~~~~~~~l~~~~~~t~~~~~~l~~e 150 (351)
T PF00728_consen 94 DTPGHAEAWLKA----YPELGCSAWPED-KSWPN-STC-----------------WYPDNGVLDPSNPETYEFLKDLLDE 150 (351)
T ss_dssp EESSS-HHHHHH----HHHHCCCHTTCS-SSCEE-EET-----------------TSEEEEEE-TTSHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHh----Cchhhccccccc-ccccc-ccc-----------------cCCCcccCCCCcHHHHHHHHHHHHH
Confidence 88898763210 00000000 000 00000 000 0000011899999999999999999
Q ss_pred HHHhcCCCeEee
Q 018278 190 LKTEIGFDGWRF 201 (358)
Q Consensus 190 w~~~~gvDGfR~ 201 (358)
+++-+.-.-|.+
T Consensus 151 ~~~~f~~~~iHi 162 (351)
T PF00728_consen 151 VADLFPSKYIHI 162 (351)
T ss_dssp HHHHHTSSEEEE
T ss_pred HHhhCCCCeEEe
Confidence 998666444444
|
2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C .... |
| >PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.1 Score=37.59 Aligned_cols=65 Identities=17% Similarity=0.041 Sum_probs=42.3
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCC-CccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGY-MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY-~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+-+.+...+-+|+-+++|+..|.+-=-+.. ++. ...|+..+. + ..++++||+-|+++|++|+|=+
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~---~~~~~~~d~~~~~-~----~~dl~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYG---WEKDDDFDFTKPI-P----DFDLPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCG---S--TTT--TT-B--T----T--HHHHHHHHHHTT-EEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecccccc---ccccccccccccC-C----ccCHHHHHHHHHHcCCCEEEEE
Confidence 568999999999999999999998211111 111 345555555 3 3789999999999999999864
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A. |
| >PF14883 GHL13: Hypothetical glycosyl hydrolase family 13 | Back alignment and domain information |
|---|
Probab=91.81 E-value=4.1 Score=36.86 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=75.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHH-HHH-HcCCEEEEEeecccccccCC
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ-AFR-QKGIKCLADMVINHRTAERK 121 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~-~~H-~~Gi~VilD~V~NH~~~~~~ 121 (358)
.|-.-++.|+++|+++|+|-++....++.-.+.. |=++ .++=-.+|+-.=|. .++ +.|++|+.-+.+ .+-+-+
T Consensus 18 nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpn-r~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp 92 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPN-RHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLP 92 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCC-CCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCC
Confidence 3445577899999999999988766544333332 3355 55555566544433 444 899999999876 322211
Q ss_pred CCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEee
Q 018278 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~ 201 (358)
+.. .+....... ........|..-+|++|+.|.+..+-+...-.+||+=|
T Consensus 93 ----------~~~-----~~~~~~~~~---------------~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 93 ----------KVK-----RADEVRTDR---------------PDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred ----------Ccc-----hhhhccccC---------------CCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 000 000000000 00111223777789999999999999998459999988
|
|
| >PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.66 Score=44.19 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=67.6
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
+.+.+.++-+|++|||.|-|..+.=+ .++ |.=| +-+.|.++|+.|+++||+|||-+.. +...
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~------------~lE-P~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~P-- 73 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWS------------WLE-PEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAPP-- 73 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHH------------HH--SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS---
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechh------------hcc-CCCCeeecHHHHHHHHHHHhccCeEEEEecc-cccc--
Confidence 55677799999999999999775211 111 1111 1334778999999999999997762 2211
Q ss_pred CCCCcceeeccCCCCCC-CCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----
Q 018278 121 KDGRGIYCIFEGGTSDD-RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG---- 195 (358)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~g---- 195 (358)
.|.. .. .+.. ..+.... .. ....-...+..+|..|+++.+.++.++++|+
T Consensus 74 -----~Wl~-~~-~Pe~~~~~~~g~-------~~-----------~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~ 128 (374)
T PF02449_consen 74 -----AWLY-DK-YPEILPVDADGR-------RR-----------GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPA 128 (374)
T ss_dssp -----HHHH-CC-SGCCC-B-TTTS-------BE-----------ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred -----cchh-hh-cccccccCCCCC-------cC-----------ccCCccccchhHHHHHHHHHHHHHHHHhhccccce
Confidence 1211 10 0000 0000000 00 0011122577899999999998887777665
Q ss_pred CCeEeeccCCC
Q 018278 196 FDGWRFDFVKG 206 (358)
Q Consensus 196 vDGfR~D~a~~ 206 (358)
|-|+-+|.=..
T Consensus 129 vi~~~i~NE~~ 139 (374)
T PF02449_consen 129 VIGWQIDNEPG 139 (374)
T ss_dssp EEEEEECCSTT
T ss_pred EEEEEeccccC
Confidence 66888887543
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A. |
| >PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.82 Score=41.79 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=32.9
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
-..-+++||+||+|+|.+ |+|| |.. +=.+..+.+.+.||.||+|+-.-+.+.+.
T Consensus 55 C~rDi~~l~~LgiNtIRV-----------------Y~vd-p~~----nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r 108 (314)
T PF03198_consen 55 CKRDIPLLKELGINTIRV-----------------YSVD-PSK----NHDECMSAFADAGIYVILDLNTPNGSINR 108 (314)
T ss_dssp HHHHHHHHHHHT-SEEEE-----------------S----TTS------HHHHHHHHHTT-EEEEES-BTTBS--T
T ss_pred HHHhHHHHHHcCCCEEEE-----------------EEeC-CCC----CHHHHHHHHHhCCCEEEEecCCCCccccC
Confidence 344578999999999986 4455 433 22455566788999999999777666553
|
It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A. |
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.54 Score=44.98 Aligned_cols=52 Identities=12% Similarity=0.284 Sum_probs=43.8
Q ss_pred CCCCCCCCC-----CCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhc
Q 018278 166 FQPAPDIDH-----LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT 219 (358)
Q Consensus 166 ~~~~~dln~-----~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~ 219 (358)
|++..+|+| .||.++++|.++.+..++ -++|||+|.++.-|..+.+.++++.
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTPlhVaeylLd~A 416 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTPLHVAEYLLDAA 416 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCcHHHHHHHHHHH
Confidence 356777777 678999999999999986 7899999999999998888776543
|
|
| >smart00812 Alpha_L_fucos Alpha-L-fucosidase | Back alignment and domain information |
|---|
Probab=90.11 E-value=3.4 Score=39.43 Aligned_cols=139 Identities=19% Similarity=0.143 Sum_probs=79.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCC-CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 125 (358)
+-++-+|+.|...|-|+-=+- ...-|.=..++|..++ ... ..|=+++|+++|+++||++-+= |...+
T Consensus 85 ~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~-~~p-krDiv~el~~A~rk~Glk~G~Y----~S~~D------ 152 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVD-TGP-KRDLVGELADAVRKRGLKFGLY----HSLFD------ 152 (384)
T ss_pred HHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccC-CCC-CcchHHHHHHHHHHcCCeEEEE----cCHHH------
Confidence 446678999999988764211 1111111233555555 444 5688999999999999999882 33211
Q ss_pred ceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHhcCCCeEeec
Q 018278 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKEL---SDWMNWLKTEIGFDGWRFD 202 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l---~~~~~~w~~~~gvDGfR~D 202 (358)
|+... |.+. ... .......+.-.+++ ...++.+++.||-|.+=+|
T Consensus 153 ---------------W~~p~-------y~~~-~~~---------~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD 200 (384)
T smart00812 153 ---------------WFNPL-------YAGP-TSS---------DEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFD 200 (384)
T ss_pred ---------------hCCCc-------cccc-ccc---------ccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 11100 0000 000 00111234456777 8889999999999999999
Q ss_pred cCCCCCHH-----HHHHHHHhcCCCe---EEEecc
Q 018278 203 FVKGYAPS-----ITKVYMENTSPDF---AVGEKW 229 (358)
Q Consensus 203 ~a~~i~~~-----~~~~~~~~~~p~~---~~gE~~ 229 (358)
..-.-+.. -+.+++++..|.. ++.--|
T Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~qP~~~~vvvn~R~ 235 (384)
T smart00812 201 GGWEAPDDYWRSKEFLAWLYNLSPVKDTVVVNDRW 235 (384)
T ss_pred CCCCCccchhcHHHHHHHHHHhCCCCceEEEEccc
Confidence 87433222 2333456666733 554443
|
O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis. |
| >PLN03059 beta-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.6 Score=45.39 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+-..++|..+|++|+|+|..==++.. ....| . -.|.+..||.++++.|++.||.||+=.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G--~--------~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--N--------YYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCCC--e--------eeccchHHHHHHHHHHHHcCCEEEecC
Confidence 44567888899999999986433321 01111 1 223457899999999999999999864
|
|
| >KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.85 Score=47.24 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCCCCCCCCC-----CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC-CeEEEeccCCC
Q 018278 166 FQPAPDIDHL-----NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGEKWDSL 232 (358)
Q Consensus 166 ~~~~~dln~~-----n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p-~~~~gE~~~~~ 232 (358)
|.+..+|+|. +|.++++|+++...-.. =+||+|+|.++.-|...-+.++ ++.+| .|++||-+.++
T Consensus 495 WGDsVKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgS 568 (1521)
T KOG3625|consen 495 WGDSVKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGS 568 (1521)
T ss_pred ecceeeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCC
Confidence 4567778885 47889999988876664 6899999999999887666664 45678 88999999874
|
|
| >TIGR03356 BGL beta-galactosidase | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.2 Score=43.25 Aligned_cols=65 Identities=11% Similarity=0.215 Sum_probs=46.2
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
..+.-..+-++-||+||++++-++=-+..--..|-. .+| -...+-++++|++|+++||++|+++.
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~-----~~n---~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTG-----PVN---PKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCC-----CcC---HHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 457788899999999999999986433321111210 122 12356789999999999999999975
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.4 Score=38.77 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=40.7
Q ss_pred CCchHHHH---hhh----hhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 39 GGWYNSLK---NSI----PDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 39 ~G~~~gl~---~~L----~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
||||-.+. .++ ++.|+||+++|+|+- | +..+. .++..++|+.++++|++|+-.+
T Consensus 60 GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~--------G-----~~~i~------~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 60 GGTLFEIAHSKGKFDEYLNECDELGFEAVEISD--------G-----SMEIS------LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred CccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcC--------C-----ccCCC------HHHHHHHHHHHHhCCCeEeccc
Confidence 67775542 334 488999999999872 2 23344 6789999999999999999663
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >COG1306 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.82 E-value=3.3 Score=37.43 Aligned_cols=140 Identities=16% Similarity=0.334 Sum_probs=76.6
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS---QADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt---~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
+.+.++...||+-|+|++-+-= =.--+.-.|.-.| .+. ...++ .-|.+-+|++|+++||.+|.=+|.---..-
T Consensus 77 k~~de~fk~ikdn~~Na~ViD~-Kdd~G~lty~s~d--~~~-~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~l 152 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVIDV-KDDYGELTYPSSD--EIN-KYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTIL 152 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEEEe-cCCCccEeccccc--hhh-hhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeeeE
Confidence 4556677888999999887531 0000122344443 122 22232 456788999999999999999886322111
Q ss_pred CCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ-GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
..+..-.-..+.+++ .|.. +.++. -.+..+..| .+-=++.+++|=+.+++.-++ +|+|-
T Consensus 153 ~~~n~fk~av~~~gK-----pw~~---------~~ngaLrKe~~~ehW-----Vd~y~~~~WeYNvtIAKEa~~-fGfdE 212 (400)
T COG1306 153 AKENPFKIAVYKDGK-----PWKA---------FTNGALRKESDGEHW-----VDAYDKNLWEYNVTIAKEAAK-FGFDE 212 (400)
T ss_pred EeecCceEEEEcCCC-----cchh---------hhcccccccccceee-----ecccchhhhhhhHHHHHHHHH-cCccc
Confidence 000000000111111 1211 00000 001111111 455678999999999999998 99999
Q ss_pred EeeccCCC
Q 018278 199 WRFDFVKG 206 (358)
Q Consensus 199 fR~D~a~~ 206 (358)
+.||-+..
T Consensus 213 iQFDYIRF 220 (400)
T COG1306 213 IQFDYIRF 220 (400)
T ss_pred eeeeEEEc
Confidence 99987643
|
|
| >PLN03236 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.1 Score=46.17 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecc
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+++++-+.|+++||+++-|+.+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 467888889999999999999886
|
|
| >PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=86.79 E-value=0.54 Score=43.73 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+-..++|..+|++|+|+|..-=++..- ...| ..||. ...|++++++.|+++||+||+-.=+
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df~--------g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDFT--------GNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B---S--------GGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCCC--ccccc--------chhhHHHHHHHHHHcCcEEEecccc
Confidence 344578888999999999975433210 0111 23322 2368999999999999999988544
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B .... |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=86.07 E-value=1.9 Score=33.60 Aligned_cols=42 Identities=26% Similarity=0.586 Sum_probs=31.5
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+.+-++.+.++|+.++|+.|= ..+ +++++.|++.||+|+-
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g---------------~~~----------~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG---------------AES----------EELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT---------------S------------HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc---------------hHH----------HHHHHHHHHcCCEEEe
Confidence 45667788999999999999984 455 8999999999999874
|
|
| >PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=85.71 E-value=3.3 Score=38.94 Aligned_cols=144 Identities=15% Similarity=0.055 Sum_probs=72.4
Q ss_pred hhhhhHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 125 (358)
+-++-+|++|...|-|+--+-. ..-|.-..++|..++ .. +..|=+++|+++|+++||++.+= -|.. +
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~-~~-~krDiv~El~~A~rk~Glk~G~Y---~S~~-d------ 162 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVN-SG-PKRDIVGELADACRKYGLKFGLY---YSPW-D------ 162 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGG-GG-GTS-HHHHHHHHHHHTT-EEEEE---EESS-S------
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccC-CC-CCCCHHHHHHHHHHHcCCeEEEE---ecch-H------
Confidence 4456789999999998742211 001111122322222 22 24688999999999999999982 2221 1
Q ss_pred ceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL-NPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~-n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
|+........ ..+... .++..-. ...+.++....++.++++|.+|.+=+|..
T Consensus 163 ---------------w~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~ 215 (346)
T PF01120_consen 163 ---------------WHHPDYPPDE--EGDENG----------PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGG 215 (346)
T ss_dssp ---------------CCCTTTTSSC--HCHHCC------------HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEEST
T ss_pred ---------------hcCcccCCCc--cCCccc----------ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCC
Confidence 1110000000 000000 0000000 11255588889999999999999999998
Q ss_pred CCCC--H---HHHHHHHHhcCCCeEEEecc
Q 018278 205 KGYA--P---SITKVYMENTSPDFAVGEKW 229 (358)
Q Consensus 205 ~~i~--~---~~~~~~~~~~~p~~~~gE~~ 229 (358)
..-+ . .-+.+.+++..|-.++..-+
T Consensus 216 ~~~~~~~~~~~~~~~~i~~~qp~~ii~~r~ 245 (346)
T PF01120_consen 216 WPDPDEDWDSAELYNWIRKLQPDVIINNRW 245 (346)
T ss_dssp TSCCCTHHHHHHHHHHHHHHSTTSEEECCC
T ss_pred CCccccccCHHHHHHHHHHhCCeEEEeccc
Confidence 6532 1 22333466667744444443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B .... |
| >PLN02950 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=85.40 E-value=2.8 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecc
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+++++.+.|+++||+++.|+.+.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 468889999999999999999885
|
|
| >COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.12 E-value=28 Score=31.45 Aligned_cols=123 Identities=21% Similarity=0.340 Sum_probs=75.6
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCC
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~ 121 (358)
++-+-.++..|.+-+++.+-+=|- +...+ .+=.+.++++.+ .+.|.++|.=+-+.....-
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps-------------~~g~~-~~~~~~eelr~~----~~gg~~pIAYlsIg~ae~y-- 88 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPS-------------YCGPF-NTPWTIEELRTK----ADGGVKPIAYLSIGEAESY-- 88 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEecc-------------ccCCC-CCcCcHHHHHHH----hcCCeeEEEEEechhhhhh--
Confidence 444556777777888888877662 11122 333467777755 6678889888877655321
Q ss_pred CCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEee
Q 018278 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~ 201 (358)
+.| |+......+.+|-. ..++.| .+++ ...|..|+=++.+.+.++.+++ .|+||.-+
T Consensus 89 ---R~Y--wd~~w~~~~p~wLg----~edP~W---~Gny----------~VkYW~~eWkdii~~~l~rL~d-~GfdGvyL 145 (300)
T COG2342 89 ---RFY--WDKYWLTGRPDWLG----EEDPEW---PGNY----------AVKYWEPEWKDIIRSYLDRLID-QGFDGVYL 145 (300)
T ss_pred ---hhH--hhhhhhcCCccccc----CCCCCC---CCCc----------eeeccCHHHHHHHHHHHHHHHH-ccCceEEE
Confidence 111 22222222223321 111112 1111 2678889999999999999998 99999999
Q ss_pred ccCCCC
Q 018278 202 DFVKGY 207 (358)
Q Consensus 202 D~a~~i 207 (358)
|.+...
T Consensus 146 D~VD~y 151 (300)
T COG2342 146 DVVDAY 151 (300)
T ss_pred eeechH
Confidence 998765
|
|
| >COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.15 E-value=2.6 Score=40.63 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=39.8
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG---SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G---t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.++.+.++|+.|+++|.|+=-+.+- .+... .+ |.+= ...=+.+.|+.|.++||+|++|+
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~------~~-p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWAL-QATDG------DN-PYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhh-hccCC------CC-CCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 3566889999999999986332331 11100 33 3332 23356777999999999999996
|
|
| >PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D | Back alignment and domain information |
|---|
Probab=83.11 E-value=3.6 Score=37.67 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=39.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCC-----CCCCCCc--------cccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMP--------GRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-----~~~gY~~--------~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~V 107 (358)
+......-|+.+++-|||.|.+.=+-+.. ...|+.+ .|+..++ +.| -+.+.+.|+.|.++||.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N-~~Y--F~~~d~~i~~a~~~Gi~~ 104 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPN-PAY--FDHLDRRIEKANELGIEA 104 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT-----H--HHHHHHHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCC-HHH--HHHHHHHHHHHHHCCCeE
Confidence 34555666899999999999996544422 1123333 3445555 433 577899999999999988
Q ss_pred EEEeeccc
Q 018278 108 LADMVINH 115 (358)
Q Consensus 108 ilD~V~NH 115 (358)
++|+=|
T Consensus 105 --~lv~~w 110 (289)
T PF13204_consen 105 --ALVPFW 110 (289)
T ss_dssp --EEESS-
T ss_pred --EEEEEE
Confidence 577766
|
|
| >PRK15447 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=5.1 Score=36.93 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=40.6
Q ss_pred eecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 30 FNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 30 F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
|+|. .|+++.+. ..|++.|+++||+.- +..+ .- ..| +.+++++.|+.||++|.+|++
T Consensus 10 ~~~p-----~~~~~~~~---~~~~~~gaDaVY~g~--~~~~-----------~R-~~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 10 YYWP-----KETVRDFY---QRAADSPVDIVYLGE--TVCS-----------KR-REL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred cCCC-----CCCHHHHH---HHHHcCCCCEEEECC--ccCC-----------Cc-cCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 5575 56666554 457889999999972 1101 11 112 568999999999999999998
Q ss_pred E
Q 018278 110 D 110 (358)
Q Consensus 110 D 110 (358)
=
T Consensus 67 a 67 (301)
T PRK15447 67 S 67 (301)
T ss_pred E
Confidence 3
|
|
| >PRK09856 fructoselysine 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=21 Score=32.08 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=35.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vi 108 (358)
.+.+.|+.++++|+++|+|.+-. .+-|. .+ .+..+.++|.+.+.+.||+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~----~~~~~------~~----~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR----PHAFA------PD----LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC----ccccc------cc----cCchHHHHHHHHHHHcCCeEE
Confidence 47788999999999999984200 11111 11 134578889999999999984
|
|
| >cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination | Back alignment and domain information |
|---|
Probab=82.42 E-value=5.7 Score=36.72 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccCC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (358)
++++.|+.+++.+..+++++|.||+-+|--.
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 113 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFEN 113 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 4788899899988888888999999999743
|
CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. |
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=82.13 E-value=16 Score=32.96 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=38.6
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~V 107 (358)
+.++.+.++.++++|+++|+|.+--+ +. .. +..-+.++++++.+.+.+.|+++
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p----~~--------~~-~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNP----QQ--------WK-RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCC----CC--------Cc-CCCCCHHHHHHHHHHHHHcCCCC
Confidence 44577889999999999999965211 11 11 21237788899999999999985
|
|
| >PRK14581 hmsF outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=81.73 E-value=24 Score=36.34 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=73.6
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHH-HHHHHHHH-HcCCEEEEEeecccccccC
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADL-KSLIQAFR-QKGIKCLADMVINHRTAER 120 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~-~~Lv~~~H-~~Gi~VilD~V~NH~~~~~ 120 (358)
+.|-.-++.++++|+++|+|-.+....++ |=.-. .|=++ .++==.+|+ -+..=.++ +.|++|..-+.+=-..-..
T Consensus 334 ~nl~~l~~ri~~~~~~~VyLqafadp~gd-g~~~~-lYFpn-r~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~ 410 (672)
T PRK14581 334 ENLDKLVQRISDLRVTHVFLQAFSDPKGD-GNIRQ-VYFPN-RWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDP 410 (672)
T ss_pred hhHHHHHHHHHhcCCCEEEEEeeeCCCCC-Cceee-EEecC-CcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCc
Confidence 34445577899999999999987665443 31111 12244 444444554 44435555 4599999998764221110
Q ss_pred CCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEe
Q 018278 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200 (358)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR 200 (358)
. .+. ...|..... .. ...-.....|.--+|++|+.|.+...-+...-.+||+=
T Consensus 411 ~------------~~~-~~~~~~~~~----~~----------~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~Gil 463 (672)
T PRK14581 411 S------------LPR-ITRIDPKTG----KT----------SIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGII 463 (672)
T ss_pred c------------cch-hhhcccccC----cc----------ccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 0 000 001100000 00 00001122377778999999999999999844899987
Q ss_pred ecc
Q 018278 201 FDF 203 (358)
Q Consensus 201 ~D~ 203 (358)
|.-
T Consensus 464 fhD 466 (672)
T PRK14581 464 YHD 466 (672)
T ss_pred ecc
Confidence 743
|
|
| >PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=81.49 E-value=23 Score=31.89 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=37.4
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
.+.+.++.++++|+++|+|.+.- .+. ..... .+ +.++++++.+.+.++||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~----~~~-----~~~~~--~~-~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDE----SDE-----RLARL--DW-SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCC----ccc-----ccccc--cC-CHHHHHHHHHHHHHcCCCceE
Confidence 46688999999999999996421 110 00111 11 356789999999999999874
|
|
| >cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins | Back alignment and domain information |
|---|
Probab=80.90 E-value=3 Score=39.08 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeeccCCCC
Q 018278 177 PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 177 ~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i 207 (358)
++.+..+.+.+..+++.+|+||+=+|.=...
T Consensus 85 ~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 85 EDGSFPVADKLVEVAKYYGFDGWLINIETEL 115 (339)
T ss_pred cccchHHHHHHHHHHHHhCCCceEeeeeccC
Confidence 4556677788888888899999999987766
|
The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod |
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=80.51 E-value=3.6 Score=36.46 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=38.4
Q ss_pred CCchHHHH-------hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 39 GGWYNSLK-------NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 39 ~G~~~gl~-------~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
|||+-.+. +-+++.++|||++|+++ .| +..+. .++..++|+.+++.|++|+-.+
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiS--------dG-----ti~l~------~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEIS--------DG-----TIDLP------EEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE----------S-----SS---------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEec--------CC-----ceeCC------HHHHHHHHHHHHHCCCEEeecc
Confidence 67876653 44678899999999987 23 23344 6788999999999999999875
Q ss_pred e
Q 018278 112 V 112 (358)
Q Consensus 112 V 112 (358)
=
T Consensus 134 G 134 (244)
T PF02679_consen 134 G 134 (244)
T ss_dssp S
T ss_pred c
Confidence 3
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 358 | ||||
| 1ava_A | 403 | Amy2BASI PROTEIN-Protein Complex From Barley Seed L | 1e-132 | ||
| 3bsg_A | 414 | Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant | 1e-128 | ||
| 1ht6_A | 405 | Crystal Structure At 1.5a Resolution Of The Barley | 1e-128 | ||
| 2qps_A | 405 | "sugar Tongs" Mutant Y380a In Complex With Acarbose | 1e-128 | ||
| 2qpu_A | 405 | Sugar Tongs Mutant S378p In Complex With Acarbose L | 1e-127 | ||
| 1rp8_A | 405 | Crystal Structure Of Barley Alpha-Amylase Isozyme 1 | 1e-127 | ||
| 3bsh_A | 414 | Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant | 1e-127 | ||
| 1mwo_A | 435 | Crystal Structure Analysis Of The Hyperthermostable | 1e-25 | ||
| 1gcy_A | 527 | High Resolution Crystal Structure Of Maltotetraose- | 6e-24 | ||
| 2amg_A | 418 | Structure Of Hydrolase (Glycosidase) Length = 418 | 6e-24 | ||
| 1jda_A | 429 | Maltotetraose-Forming Exo-Amylase Length = 429 | 1e-23 | ||
| 1qi3_A | 429 | Mutant (D193n) Maltotetraose-Forming Exo-Amylase In | 2e-23 | ||
| 1qi5_A | 429 | Mutant (D294n) Maltotetraose-Forming Exo-Amylase In | 2e-23 | ||
| 3qgv_A | 435 | Crystal Structure Of A Thermostable Amylase Variant | 2e-23 | ||
| 1qpk_A | 418 | Mutant (D193g) Maltotetraose-Forming Exo-Amylase In | 4e-23 | ||
| 1qi4_A | 429 | Mutant (e219g) Maltotetraose-forming Exo-amylase In | 5e-23 | ||
| 1ud2_A | 480 | Crystal Structure Of Calcium-Free Alpha-Amylase Fro | 8e-20 | ||
| 1ud3_A | 480 | Crystal Structure Of Amyk38 N289h Mutant Length = 4 | 9e-20 | ||
| 2gjp_A | 485 | Structure Of Bacillus Halmapalus Alpha-Amylase, Cry | 5e-19 | ||
| 1w9x_A | 481 | Bacillus Halmapalus Alpha Amylase Length = 481 | 6e-19 | ||
| 3bh4_A | 483 | High Resolution Crystal Structure Of Bacillus Amylo | 1e-18 | ||
| 1e3x_A | 483 | Native Structure Of Chimaeric Amylase From B. Amylo | 8e-18 | ||
| 1wp6_A | 485 | Crystal Structure Of Maltohexaose-producing Amylase | 9e-18 | ||
| 3bc9_A | 599 | Alpha-Amylase B In Complex With Acarbose Length = 5 | 3e-17 | ||
| 1vjs_A | 483 | Structure Of Alpha-Amylase Precursor Length = 483 | 4e-17 | ||
| 2die_A | 485 | Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1 | 4e-17 | ||
| 1bli_A | 483 | Bacillus Licheniformis Alpha-Amylase Length = 483 | 2e-16 | ||
| 1ob0_A | 483 | Kinetic Stabilization Of Bacillus Licheniformis-Amy | 2e-16 | ||
| 1hvx_A | 515 | Bacillus Stearothermophilus Alpha-Amylase Length = | 8e-16 | ||
| 1lwh_A | 441 | Crystal Structure Of T. Maritima 4-Alpha-Glucanotra | 2e-11 | ||
| 1sma_A | 588 | Crystal Structure Of A Maltogenic Amylase Length = | 2e-10 | ||
| 1j0h_A | 588 | Crystal Structure Of Bacillus Stearothermophilus Ne | 2e-10 | ||
| 1j0j_A | 588 | Crystal Structure Of Neopullulanase E357q Complex W | 4e-10 | ||
| 1gvi_A | 588 | Thermus Maltogenic Amylase In Complex With Beta-Cd | 1e-09 | ||
| 2guy_A | 478 | Orthorhombic Crystal Structure (Space Group P21212) | 2e-09 | ||
| 2taa_A | 478 | Structure And Possible Catalytic Residues Of Taka-A | 3e-09 | ||
| 1bpl_A | 189 | Glycosyltransferase Length = 189 | 1e-08 | ||
| 1qho_A | 686 | Five-Domain Alpha-Amylase From Bacillus Stearotherm | 3e-08 | ||
| 1pj9_A | 686 | Bacillus Circulans Strain 251 Loop Mutant 183-195 L | 3e-08 | ||
| 1pez_A | 686 | Bacillus Circulans Strain 251 Mutant A230v Length = | 3e-08 | ||
| 1tcm_A | 686 | Cyclodextrin Glycosyltransferase W616a Mutant From | 5e-08 | ||
| 1cdg_A | 686 | Nucleotide Sequence And X-Ray Structure Of Cyclodex | 6e-08 | ||
| 1cgw_A | 686 | Site Directed Mutations Of The Active Site Residue | 6e-08 | ||
| 1cgx_A | 686 | Site Directed Mutations Of The Active Site Residue | 7e-08 | ||
| 1ea9_C | 583 | Cyclomaltodextrinase Length = 583 | 8e-08 | ||
| 1cgv_A | 686 | Site Directed Mutations Of The Active Site Residue | 1e-07 | ||
| 1kck_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 1e-07 | ||
| 1cgy_A | 686 | Site Directed Mutations Of The Active Site Residue | 1e-07 | ||
| 1wza_A | 488 | Crystal Structure Of Alpha-Amylase From H.Orenii Le | 1e-07 | ||
| 1dtu_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 1e-07 | ||
| 1cxl_A | 686 | Complex Between A Covalent Intermediate And Bacillu | 1e-07 | ||
| 1bpl_B | 294 | Glycosyltransferase Length = 294 | 1e-07 | ||
| 1ot2_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 2e-07 | ||
| 4cgt_A | 678 | Deletion Mutant Delta(145-150), F151d Of Cyclodextr | 2e-07 | ||
| 1cyg_A | 680 | Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgt | 3e-07 | ||
| 1v3k_A | 686 | Crystal Structure Of F283y Mutant Cyclodextrin Glyc | 3e-07 | ||
| 1cxk_A | 686 | Complex Between A Maltononaose Substrate And Bacill | 4e-07 | ||
| 1d7f_A | 686 | Crystal Structure Of Asparagine 233-Replaced Cyclod | 4e-07 | ||
| 1ot1_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 4e-07 | ||
| 1kcl_A | 686 | Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl | 4e-07 | ||
| 1pam_A | 686 | Cyclodextrin Glucanotransferase Length = 686 | 5e-07 | ||
| 1v3j_A | 686 | Crystal Structure Of F283l Mutant Cyclodextrin Glyc | 5e-07 | ||
| 1ukt_A | 686 | Crystal Structure Of Y100l Mutant Cyclodextrin Gluc | 2e-06 | ||
| 1eo5_A | 686 | Bacillus Circulans Strain 251 Cyclodextrin Glycosyl | 2e-06 | ||
| 1uks_A | 686 | Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN | 2e-06 | ||
| 1cgt_A | 684 | Structure Of Cyclodextrin Glycosyltransferase Refin | 4e-06 | ||
| 6cgt_A | 684 | Hoxa Complex Of Cyclodextrin Glycosyltransferase Mu | 5e-06 | ||
| 2wc7_A | 488 | Crystal Structure Of Nostoc Punctiforme Debranching | 8e-06 | ||
| 3gbd_A | 558 | Crystal Structure Of The Isomaltulose Synthase Smua | 1e-05 | ||
| 8cgt_A | 684 | Structure Of Cyclodextrin Glycosyltransferase Compl | 2e-05 | ||
| 2aaa_A | 484 | Calcium Binding In Alpha-Amylases: An X-Ray Diffrac | 3e-05 | ||
| 1cgu_A | 684 | Catalytic Center Of Cyclodextrin Glycosyltransferas | 3e-05 | ||
| 1m53_A | 570 | Crystal Structure Of Isomaltulose Synthase (Pali) F | 4e-05 | ||
| 3dc0_A | 422 | Crystal Structure Of Native Alpha-Amylase From Baci | 1e-04 | ||
| 1jf5_A | 585 | Crystal Structure Of Thermoactinomyces Vulgaris R-4 | 1e-04 | ||
| 4h2c_A | 557 | Trehalulose Synthase Mutb R284c Mutant Length = 557 | 1e-04 | ||
| 4gi6_A | 557 | Crystal Structure Of The Mutb F164l Mutant In Compl | 1e-04 | ||
| 2pwe_A | 556 | Crystal Structure Of The Mutb E254q Mutant In Compl | 1e-04 | ||
| 2pwg_A | 556 | Crystal Structure Of The Trehalulose Synthase Mutb | 1e-04 | ||
| 1zja_A | 557 | Crystal Structure Of The Trehalulose Synthase Mutb | 1e-04 | ||
| 4gin_A | 584 | Crystal Structure Of The Mutb R284c Mutant From Cry | 1e-04 | ||
| 1uok_A | 558 | Crystal Structure Of B. Cereus Oligo-1,6-Glucosidas | 1e-04 | ||
| 1wzl_A | 585 | Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T | 2e-04 | ||
| 1wzm_A | 585 | Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (t | 2e-04 | ||
| 1wzk_A | 585 | Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T | 2e-04 | ||
| 1bvz_A | 585 | Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vul | 3e-04 | ||
| 1jf6_A | 585 | Crystal Structure Of Thermoactinomyces Vulgaris R-4 | 3e-04 | ||
| 2z1k_A | 475 | Crystal Structure Of Ttha1563 From Thermus Thermoph | 3e-04 | ||
| 4aie_A | 549 | Structure Of Glucan-1,6-Alpha-Glucosidase From Lact | 3e-04 | ||
| 2zid_A | 543 | Crystal Structure Of Dextran Glucosidase E236q Comp | 4e-04 | ||
| 2zic_A | 543 | Crystal Structure Of Streptococcus Mutans Dextran G | 4e-04 | ||
| 2wan_A | 921 | Pullulanase From Bacillus Acidopullulyticus Length | 5e-04 | ||
| 2vnc_A | 718 | Crystal Structure Of Glycogen Debranching Enzyme Tr | 7e-04 | ||
| 2ze0_A | 555 | Alpha-glucosidase Gsj Length = 555 | 7e-04 | ||
| 1bf2_A | 750 | Structure Of Pseudomonas Isoamylase Length = 750 | 7e-04 | ||
| 4gkl_A | 422 | Crystal Structure Of A Noncanonic Maltogenic Alpha- | 7e-04 | ||
| 1ua7_A | 422 | Crystal Structure Analysis Of Alpha-Amylase From Ba | 7e-04 | ||
| 1bag_A | 425 | Alpha-Amylase From Bacillus Subtilis Complexed With | 7e-04 | ||
| 1vfm_A | 585 | Crystal Structure Of Thermoactinomyces Vulgaris R-4 | 8e-04 | ||
| 1jl8_A | 585 | Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoact | 8e-04 | ||
| 2pwf_A | 556 | Crystal Structure Of The Mutb D200a Mutant In Compl | 9e-04 |
| >pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed Length = 403 | Back alignment and structure |
|
| >pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant Length = 414 | Back alignment and structure |
|
| >pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 Length = 405 | Back alignment and structure |
|
| >pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose Length = 405 | Back alignment and structure |
|
| >pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose Length = 405 | Back alignment and structure |
|
| >pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1) Inactive Mutant D180a In Complex With Maltoheptaose Length = 405 | Back alignment and structure |
|
| >pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE Length = 414 | Back alignment and structure |
|
| >pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable Pyrocoocus Woesei Alpha-Amylase Length = 435 | Back alignment and structure |
|
| >pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming Exo-Amylase Length = 527 | Back alignment and structure |
|
| >pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase) Length = 418 | Back alignment and structure |
|
| >pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase Length = 429 | Back alignment and structure |
|
| >pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In Complex With Maltotetraose Length = 429 | Back alignment and structure |
|
| >pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In Complex With Maltotetraose Length = 429 | Back alignment and structure |
|
| >pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant Length = 435 | Back alignment and structure |
|
| >pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In Complex With Maltotetraose Length = 418 | Back alignment and structure |
|
| >pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In Complex With Maltotetraose Length = 429 | Back alignment and structure |
|
| >pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From Bacillus Sp. Strain Ksm-K38 (Amyk38) Length = 480 | Back alignment and structure |
|
| >pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant Length = 480 | Back alignment and structure |
|
| >pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase, Crystallized With The Substrate Analogue Acarbose And Maltose Length = 485 | Back alignment and structure |
|
| >pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase Length = 481 | Back alignment and structure |
|
| >pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus Amyloliquefaciens Alpha-Amylase Length = 483 | Back alignment and structure |
|
| >pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B. Amyloliquefaciens And B. Licheniformis At 1.92a Length = 483 | Back alignment and structure |
|
| >pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From Alkalophilic Bacillus Sp.707. Length = 485 | Back alignment and structure |
|
| >pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose Length = 599 | Back alignment and structure |
|
| >pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor Length = 483 | Back alignment and structure |
|
| >pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378 Length = 485 | Back alignment and structure |
|
| >pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase Length = 483 | Back alignment and structure |
|
| >pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase Through Introduction Of Hydrophobic Residues At The Surface Length = 483 | Back alignment and structure |
|
| >pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase Length = 515 | Back alignment and structure |
|
| >pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-Glucanotransferase Length = 441 | Back alignment and structure |
|
| >pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase Length = 588 | Back alignment and structure |
|
| >pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Neopullulanase Length = 588 | Back alignment and structure |
|
| >pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With Maltotetraose Length = 588 | Back alignment and structure |
|
| >pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd Length = 588 | Back alignment and structure |
|
| >pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of Aspergillus Niger Alpha-Amylase At 1.6 A Resolution Length = 478 | Back alignment and structure |
|
| >pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase A Length = 478 | Back alignment and structure |
|
| >pdb|1BPL|A Chain A, Glycosyltransferase Length = 189 | Back alignment and structure |
|
| >pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus Stearothermophilus, MaltoseACARBOSE COMPLEX Length = 686 | Back alignment and structure |
|
| >pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195 Length = 686 | Back alignment and structure |
|
| >pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v Length = 686 | Back alignment and structure |
|
| >pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From Bacillus Circulans Strain 251 Length = 686 | Back alignment and structure |
|
| >pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 In A Maltose-Dependent Crystal Form Length = 686 | Back alignment and structure |
|
| >pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 | Back alignment and structure |
|
| >pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 | Back alignment and structure |
|
| >pdb|1EA9|C Chain C, Cyclomaltodextrinase Length = 583 | Back alignment and structure |
|
| >pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 | Back alignment and structure |
|
| >pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant N193g Length = 686 | Back alignment and structure |
|
| >pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 | Back alignment and structure |
|
| >pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii Length = 488 | Back alignment and structure |
|
| >pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN Hexasaccharide Inhibitor Length = 686 | Back alignment and structure |
|
| >pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus Circulans Strain 251 Cgtase E257q Length = 686 | Back alignment and structure |
|
| >pdb|1BPL|B Chain B, Glycosyltransferase Length = 294 | Back alignment and structure |
|
| >pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135n Length = 686 | Back alignment and structure |
|
| >pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin Glycosyltransferase Length = 678 | Back alignment and structure |
|
| >pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase) Length = 680 | Back alignment and structure |
|
| >pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin Glycosyltransferase Length = 686 | Back alignment and structure |
|
| >pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus Circulans Strain 251 Cgtase E257qD229N Length = 686 | Back alignment and structure |
|
| >pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin Glucanotransferase From Alkalophilic Bacillus Sp. 1011 Determined At 1.9 A Resolution Length = 686 | Back alignment and structure |
|
| >pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135a Length = 686 | Back alignment and structure |
|
| >pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl Transferase Mutant G179l Length = 686 | Back alignment and structure |
|
| >pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase Length = 686 | Back alignment and structure |
|
| >pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin Glycosyltransferase Length = 686 | Back alignment and structure |
|
| >pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin Glucanotransferase Compexed With An Acarbose Length = 686 | Back alignment and structure |
|
| >pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase In Complex With Maltoheptaose Length = 686 | Back alignment and structure |
|
| >pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN Glucanotransferase Complexed With A Pseudo-Maltotetraose Derived From Acarbose Length = 686 | Back alignment and structure |
|
| >pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At 2.0 Angstroms Resolution Length = 684 | Back alignment and structure |
|
| >pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant Length = 684 | Back alignment and structure |
|
| >pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching Enzyme( Npde)(Acarbose Soaked) Length = 488 | Back alignment and structure |
|
| >pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From Protaminobacter Rubrum Length = 558 | Back alignment and structure |
|
| >pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed With A Thio-Maltohexaose Length = 684 | Back alignment and structure |
|
| >pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction Study At 2.1 Angstroms Resolution Of Two Enzymes From Aspergillus Length = 484 | Back alignment and structure |
|
| >pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase Derived From X-Ray Structure Analysis Combined With Site- Directed Mutagenesis Length = 684 | Back alignment and structure |
|
| >pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From Klebsiella Sp. Lx3 Length = 570 | Back alignment and structure |
|
| >pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus Sp. Kr-8104 Length = 422 | Back alignment and structure |
|
| >pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2 Mutant F286a Length = 585 | Back alignment and structure |
|
| >pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant Length = 557 | Back alignment and structure |
|
| >pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With Glucose Length = 557 | Back alignment and structure |
|
| >pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With The Substrate Sucrose Length = 556 | Back alignment and structure |
|
| >pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 Complexed To The Inhibitor Castanospermine Length = 556 | Back alignment and structure |
|
| >pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 (Triclinic Form) Length = 557 | Back alignment and structure |
|
| >pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals Soaked With The Inhibitor Deoxynojirimycin Length = 584 | Back alignment and structure |
|
| >pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase Length = 558 | Back alignment and structure |
|
| >pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt R469l Length = 585 | Back alignment and structure |
|
| >pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii) Mutatnt R469k Length = 585 | Back alignment and structure |
|
| >pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt D465n Length = 585 | Back alignment and structure |
|
| >pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R- 47 Length = 585 | Back alignment and structure |
|
| >pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase Mutant F286y Length = 585 | Back alignment and structure |
|
| >pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus Hb8 Length = 475 | Back alignment and structure |
|
| >pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From Lactobacillus Acidophilus Ncfm Length = 549 | Back alignment and structure |
|
| >pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex With Isomaltotriose Length = 543 | Back alignment and structure |
|
| >pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran Glucosidase Length = 543 | Back alignment and structure |
|
| >pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus Length = 921 | Back alignment and structure |
|
| >pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From Sulfolobus Solfataricus Length = 718 | Back alignment and structure |
|
| >pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj Length = 555 | Back alignment and structure |
|
| >pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase Length = 750 | Back alignment and structure |
|
| >pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase Amyb From Thermotoga Neapolitana Length = 422 | Back alignment and structure |
|
| >pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus Subtilis Complexed With Acarbose Length = 422 | Back alignment and structure |
|
| >pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With Maltopentaose Length = 425 | Back alignment and structure |
|
| >pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2ALPHA-Cyclodextrin Complex Length = 585 | Back alignment and structure |
|
| >pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin Based On A Co- Crystallization With Methyl Beta-Cyclodextrin Length = 585 | Back alignment and structure |
|
| >pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With Glucose Length = 556 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 358 | |||
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 1e-136 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 2e-89 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 1e-85 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 6e-84 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 9e-80 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 4e-78 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 2e-76 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 2e-63 | |
| 1hx0_A | 496 | Alpha amylase (PPA); inhibitor, carbohydrate, panc | 4e-39 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 7e-32 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 3e-26 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 2e-29 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 5e-29 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 9e-29 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 8e-28 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 2e-27 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 3e-27 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 2e-26 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 3e-26 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 3e-25 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 5e-24 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 2e-23 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 5e-23 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 2e-08 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 1e-22 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 1e-21 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 4e-20 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 4e-20 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 2e-19 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 4e-19 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 5e-19 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 1e-13 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 6e-11 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 5e-11 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 2e-10 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 3e-09 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 3e-09 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 6e-09 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 2e-07 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 2e-06 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 3e-06 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 1e-05 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 1e-04 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 2e-04 | |
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 2e-04 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 2e-04 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 2e-04 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 3e-04 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 5e-04 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 6e-04 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 6e-04 |
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Length = 405 | Back alignment and structure |
|---|
Score = 392 bits (1009), Expect = e-136
Identities = 208/320 (65%), Positives = 248/320 (77%), Gaps = 3/320 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR DF
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG---A 261
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GG A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCI 341
SDKVM GYAYILTHPG PCI
Sbjct: 303 SDKVMQGYAYILTHPGIPCI 322
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 2e-89
Identities = 95/335 (28%), Positives = 143/335 (42%), Gaps = 41/335 (12%)
Query: 26 LFQGFNWESSNKAGG-WYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQGY 74
+ QGF+W +A WYN L+ ++ G + +W+P P S+S +GY
Sbjct: 19 ILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGY 78
Query: 75 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGT 134
++ + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 79 FW-HDFNKN-GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFW 136
Query: 135 SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSDWMNWLKTE 193
+D D G + + D G+ F D++ +P+V D L+++
Sbjct: 137 RNDCADPG------------NYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQ 184
Query: 194 IGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALK 252
G G+RFDFV+GYAP +M +++ + F VGE W S P+ N + +K
Sbjct: 185 YGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNW-DWRNTASWQQIIK 243
Query: 253 DWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 312
DW A FDF K +Q + + N P + AVTF+DNHDTG
Sbjct: 244 DWSDRAK--CPVFDFALKERMQNGSIADWKHGLNGNPDPR-----WREVAVTFVDNHDTG 296
Query: 313 STQRL------WPFPSDKVMLGYAYILTHPGTPCI 341
+ W + YAYILT PGTP +
Sbjct: 297 YSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVV 331
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 1e-85
Identities = 96/376 (25%), Positives = 138/376 (36%), Gaps = 78/376 (20%)
Query: 25 LLFQGFNWESSNKA--------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---G 73
+ Q F WE + +N L P+L+ AG T VWLPP ++ +A G
Sbjct: 124 TILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVG 183
Query: 74 YMPGRLYDLD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA------- 118
Y L+DL +KYG++ +L++ I A IK D V+NHR
Sbjct: 184 YGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETV 243
Query: 119 ----ERKDGRGIYCI------FEG-----------GTSDDRLDWGPSFICRGDKEYSDGQ 157
+D G Y F G G D DW G + +
Sbjct: 244 LLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKS 303
Query: 158 --GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY 215
+ ED+ D+D+ N VQ ++ DW W+ I FDG+R D VK +
Sbjct: 304 WDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKW 363
Query: 216 MENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA-VAAFDFTT 269
M F VGE W LK ++ G + FDF
Sbjct: 364 MSAVQNSSNRDVFFVGEAW---------------VEDVDDLKGFLDTVGNPDLRVFDFPL 408
Query: 270 KGILQAAVQGE-LWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-SDKVM 326
+ + G + L++ PG+ AVTF+DNHDT + + +
Sbjct: 409 RSFFVDMLNGAYMADLRNAGLVNSPGY----ENRAVTFVDNHDTDRDEGSYTVSIYSRKY 464
Query: 327 LGYAYILTH-PGTPCI 341
YAYILT G P +
Sbjct: 465 QAYAYILTRAEGVPTV 480
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* Length = 435 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 6e-84
Identities = 97/342 (28%), Positives = 144/342 (42%), Gaps = 45/342 (13%)
Query: 15 AIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP--- 71
A +L ++ Q F W+ G W++ +++ IP+ AGI+ +WLPPPS+ ++
Sbjct: 1 AKYLELEEGGVIMQAFYWDVPGG-GIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYS 59
Query: 72 QGYMPGRLYDLD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG 123
GY P +DL +++GS+ +L LIQ GIK +AD+VINHR +
Sbjct: 60 MGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEW 119
Query: 124 RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKEL 183
+ T ++ G D ++ D F PDI H Q L
Sbjct: 120 NP-FVGDYTWTDFSKVASGKYTANYLDFHPNELHCCD--EGTFGGFPDICHHKEWDQYWL 176
Query: 184 ---SDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKP 240
++ IGFDGWRFD+VKGY + + ++ +AVGE W
Sbjct: 177 WKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLN-WWGGWAVGEYW----------- 224
Query: 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILP 299
D + AL W +G V FDF + A + L + + P
Sbjct: 225 ----DTNVDALLSWAYESGAKV--FDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDP 278
Query: 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
AVTF+ NHDT +P YA+ILT+ G P I
Sbjct: 279 FKAVTFVANHDTDIIWNKYP--------AYAFILTYEGQPVI 312
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 9e-80
Identities = 92/374 (24%), Positives = 144/374 (38%), Gaps = 75/374 (20%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP--SQSVAPQGYMPGRLYDL 82
+ Q + W G +N L + LS+AGIT +W+PP S A GY LYDL
Sbjct: 6 TMMQYYEWHL-ENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDL 64
Query: 83 D--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TA 118
+KYG++A L+ I + + I D+V+NH+ T
Sbjct: 65 GEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTN 124
Query: 119 ERKDGRGIYCIF----------EGGTSDDRLDWGP-------------SFICRGDKEYSD 155
+D G Y I SD + W + ++
Sbjct: 125 RWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNW 184
Query: 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY 215
++ D+ +ID +P VQ EL DW +W E+ DG+R D +K T +
Sbjct: 185 RVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDW 244
Query: 216 MENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK 270
+ + + F VGE W GAL+ ++ ++ FD
Sbjct: 245 VRHQRNEADQDLFVVGEYW---------------KDDVGALEFYLDEMNWEMSLFDVPLN 289
Query: 271 G-ILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM-LG 328
+A+ QG + +++ + P +AVTF+DNHDT + L + +D L
Sbjct: 290 YNFYRASQQGGSYDMRNIL--RGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLA 347
Query: 329 YAYILTH-PGTPCI 341
YA ILT G P +
Sbjct: 348 YATILTREGGYPNV 361
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483 | Back alignment and structure |
|---|
Score = 247 bits (631), Expect = 4e-78
Identities = 94/380 (24%), Positives = 147/380 (38%), Gaps = 83/380 (21%)
Query: 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYD 81
L Q F W + G + L+N LS+ GIT VW+PP + ++ GY P LYD
Sbjct: 3 GTLMQYFEWYT-PNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYD 61
Query: 82 LD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------- 116
L +KYG++++L+ I + + ++ D+V+NH+
Sbjct: 62 LGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPA 121
Query: 117 ---------------TAERKDGRG--------IYCIFEGGTSDDRLDWGPSFICRGDKEY 153
T R GRG + F+G D+ F RG+ +
Sbjct: 122 NRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKA 181
Query: 154 SDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
D + + + G D+ D+D+ +P V E W W E+ DG+R D K S
Sbjct: 182 WDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFL 241
Query: 213 KVYMENT-----SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
+ +++ F V E W + G L++++ + FD
Sbjct: 242 RDWVQAVRQATGKEMFTVAEYW---------------QNNAGKLENYLNKTSFNQSVFDV 286
Query: 268 TTKGILQAAVQGE----LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLW-PFPS 322
LQAA + RL D + P+ AVTF++NHDT Q L +
Sbjct: 287 PLHFNLQAASSQGGGYDMRRLLDGT-----VVSRHPEKAVTFVENHDTQPGQSLESTVQT 341
Query: 323 DKVMLGYAYILT-HPGTPCI 341
L YA+ILT G P +
Sbjct: 342 WFKPLAYAFILTRESGYPQV 361
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Length = 485 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 2e-76
Identities = 90/377 (23%), Positives = 140/377 (37%), Gaps = 78/377 (20%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDL 82
+ Q F W G +N L + +L + GIT VW+PP + + GY LYDL
Sbjct: 8 TMMQYFEWYL-PNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDL 66
Query: 83 D--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE--------------- 119
+KYG+++ L++ + + + GI+ D+V+NH+
Sbjct: 67 GEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNN 126
Query: 120 RKDGRGIYCIFEGGTSDD-------------------RLDWGPSFICRGDKEYSDGQGND 160
R E T D +DW S G G
Sbjct: 127 RNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKA 186
Query: 161 --------DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212
+ D+ DID +P V EL +W W +G DG+R D VK S T
Sbjct: 187 WDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFT 246
Query: 213 KVYM----ENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
+ ++ T + FAV E W GA+++++Q + FD
Sbjct: 247 RDWINHVRSATGKNMFAVAEFW---------------KNDLGAIENYLQKTNWNHSVFDV 291
Query: 268 TTKGIL-QAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM 326
L A+ G + +++ + P +AVTF+DNHD+ + L F +
Sbjct: 292 PLHYNLYNASKSGGNYDMRNIFNG--TVVQRHPSHAVTFVDNHDSQPEEALESFVEEWFK 349
Query: 327 -LGYAYILTH-PGTPCI 341
L YA LT G P +
Sbjct: 350 PLAYALTLTREQGYPSV 366
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 2e-63
Identities = 94/376 (25%), Positives = 138/376 (36%), Gaps = 77/376 (20%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP--SQSVAPQGYMPGRLYDL 82
+ Q F W + G + + N +LS+ GIT +WLPP S + GY LYDL
Sbjct: 7 TMMQYFEWYLPDD-GTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDL 65
Query: 83 D--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHR------------------ 116
+KYG++A IQA G++ AD+V +H+
Sbjct: 66 GEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSD 125
Query: 117 --------------TAERKDGRG--------IYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
T GRG + F+G D+ + RG +
Sbjct: 126 RNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAW 185
Query: 155 DGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS--- 210
D + + + G D+ D+D +P V EL W W DG+R D VK S
Sbjct: 186 DWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFP 245
Query: 211 --ITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFT 268
++ V + P F VGE W L +++ G ++ FD
Sbjct: 246 DWLSYVRSQTGKPLFTVGEYW---------------SYDINKLHNYIMKTNGTMSLFDAP 290
Query: 269 TK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLW-PFPSDKVM 326
A+ G + ++ + P AVTF+DNHDT Q L
Sbjct: 291 LHNKFYTASKSGGTFDMRTLMTN--TLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKP 348
Query: 327 LGYAYILT-HPGTPCI 341
L YA+ILT G PC+
Sbjct: 349 LAYAFILTRQEGYPCV 364
|
| >1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase; HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1 c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A 1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A* 1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A* 3ij8_A* ... Length = 496 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 4e-39
Identities = 62/345 (17%), Positives = 111/345 (32%), Gaps = 42/345 (12%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP--------QGYMPG 77
+ F W W + L G V + PP++++ + Y P
Sbjct: 13 IVHLFEWR-------WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQP- 64
Query: 78 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDD 137
Y L ++ G++ + + ++ G++ D VINH +
Sbjct: 65 VSYKLC-TRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGN 123
Query: 138 RL----DWGPSFICRGDKEYSDGQGND------DTGEDFQPAPDIDHLNPRVQKELSDWM 187
R + G + + G D+ V+ ++D++
Sbjct: 124 REFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYL 183
Query: 188 NWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGH 247
N L +IG G+R D K P K ++ S + D
Sbjct: 184 NKL-IDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQE----VIDLG 238
Query: 248 RGALKDWVQAAGGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFI 306
A+K G V F + K G + GE + G+ GF+ A+ F+
Sbjct: 239 GEAIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMP--SDRALVFV 296
Query: 307 DNHDT------GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVIS 344
DNHD G + L + + + ++L HP G ++ S
Sbjct: 297 DNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSS 341
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 7e-32
Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 87/327 (26%)
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----GRGIYCIFEGGTSDDRL 139
+ + L+ I AF +K + N + + D G +Y TS
Sbjct: 105 TAEKNTNWLRQTISAF----VKTQSA--WNSDSEKPFDDHLQKGALLYSNNSKLTSQANS 158
Query: 140 DW-----GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL---- 190
++ P+ G K+ G +F A D+D+ NP VQ E +W+++L
Sbjct: 159 NYRILNRTPTNQ-TGKKDPRYTADRTIGGYEFLLANDVDNSNPVVQAEQLNWLHFLMNFG 217
Query: 191 -----KTEIGFDGWRFDFVKGYAPSITKVYME-------------NTSPDFAVGEKWDSL 232
+ FD R D V + ++ + + ++ E W
Sbjct: 218 NIYANDPDANFDSIRVDAVDNVDADLLQIAGDYLKAAKGIHKNDKAANDHLSILEAWS-- 275
Query: 233 SYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPP 292
D + + + + ++ + A + + + L D N +
Sbjct: 276 --YNDTPYLHDDGDNMINMDNRLRLSLLYSLAKPLNQRSGMNPLITNSLVNRTDDNAETA 333
Query: 293 GFIGILPQNAVTFIDNHDTGSTQRL------WPFPS------------------------ 322
+ +FI HD+ + P+
Sbjct: 334 ------AVPSYSFIRAHDSEVQDLIRDIIKAEINPNVVGYSFTMEEIKKAFEIYNKDLLA 387
Query: 323 -------DKVMLGYAYILTH-PGTPCI 341
L YA +LT+ P +
Sbjct: 388 TEKKYTHYNTALSYALLLTNKSSVPRV 414
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844 | Back alignment and structure |
|---|
Score = 109 bits (272), Expect = 3e-26
Identities = 45/219 (20%), Positives = 71/219 (32%), Gaps = 49/219 (22%)
Query: 24 ALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS---------VAP 71
++F+GF+ ++ K + ++ + G+T + P S V
Sbjct: 611 RVMFEGFSNFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQ 670
Query: 72 QGYMPGRLYDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAE 119
GY YDL S KYG+ DL I+A KGIK +AD V + TA
Sbjct: 671 NGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYALPEKEVVTAT 730
Query: 120 RKDGRGIY------------CIFEGGTSDDRLDWGPSFICRGDKEYSD--GQGNDDTGED 165
R D G + D + +G +F+ +Y + + TG
Sbjct: 731 RVDKYGTPVAGSQIKNTLYVVDGKSSGKDQQAKYGGAFLEELQAKYPELFARKQISTGVP 790
Query: 166 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
P+ I W G +V
Sbjct: 791 MDPSVKIK-----------QWSAKYFNGTNILGRGAGYV 818
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 2e-29
Identities = 64/328 (19%), Positives = 114/328 (34%), Gaps = 60/328 (18%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP-----------QGYMPGRLYDLDASKY 87
+N+LK+++ D+ +AG T + P +Q Y P +
Sbjct: 13 NWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGN-RYL 71
Query: 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFIC 147
G++ + K + A + GIK + D VINH T + S++
Sbjct: 72 GTEQEFKEMCAAAEEYGIKVIVDAVINHTTFD-----------YAAISNEVKSIPNWTHG 120
Query: 148 RGD-KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
K +SD D T D + N +VQ L ++ G DG+RFD K
Sbjct: 121 NTQIKNWSD--RWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERAL-NDGADGFRFDAAKH 177
Query: 207 YAPSITKVY-------MENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG 259
Y + NTS +F GE + A +
Sbjct: 178 IELPDDGSYGSQFWPNITNTSAEFQYGEILQ----DSASRDAAYAN-------------Y 220
Query: 260 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILP-QNAVTFIDNHDT--GSTQR 316
V A ++ +++A++ + + + + VT++++HDT +
Sbjct: 221 MDVTASNYGHS--IRSALKNRNLGVSN----ISHYASDVSADKLVTWVESHDTYANDDEE 274
Query: 317 LWPFPSDKVMLGYAYILTHPGTPCIVIS 344
D + LG+A I + G+ + S
Sbjct: 275 STWMSDDDIRLGWAVIASRSGSTPLFFS 302
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* Length = 448 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 5e-29
Identities = 65/338 (19%), Positives = 109/338 (32%), Gaps = 55/338 (16%)
Query: 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGR 78
+P F W W + + L G V + PP++ +
Sbjct: 1 TPTTFVHLFEWN-------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPV 53
Query: 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDR 138
Y+L S+ G++A ++ G+ D +INH A G G S
Sbjct: 54 SYELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTG-------TAGNSFGN 105
Query: 139 LDWG--------PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190
+ S +D + D+D + VQ ++ ++N L
Sbjct: 106 KSFPIYSPQDFHESCTINNSDYGND--RYRVQNCELVGLADLDTASNYVQNTIAAYINDL 163
Query: 191 KTEIGFDGWRFDFVKGYAPS-ITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRG 249
IG G+RFD K A S I + + E D
Sbjct: 164 -QAIGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVI---------------DQGGE 207
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
A+ + G V F ++T+ L + + G+ GF+ +AV F+DNH
Sbjct: 208 AVGASEYLSTGLVTEFKYSTE--LGNTFRNGSLAWLSNFGEGWGFMP--SSSAVVFVDNH 263
Query: 310 D-----TGSTQRLWPFPSDKVMLGYAYILTHP-GTPCI 341
D G+ + L ++L +P G P +
Sbjct: 264 DNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPKV 301
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 9e-29
Identities = 62/323 (19%), Positives = 105/323 (32%), Gaps = 54/323 (16%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--------GYMPGRLYDLDASKYGSQ 90
GG + + + + + G T +W+ P ++ + GY ++YD++ S +G+
Sbjct: 39 GGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVN-SNFGTA 97
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
+LKSL A +G+ + D+V +H Y +F+ S I D
Sbjct: 98 DNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHP-YCLITDWD 156
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210
+ G+ PD+D V+ DW+ L + DG R D
Sbjct: 157 NLTMVEDCWE--GDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID----SVLE 210
Query: 211 ITKVYME--NTSPDF-AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
+ + N + VGE + G Q G L ++
Sbjct: 211 VQPDFFPGYNKASGVYCVGEIDN----GNPASDCPYQKVLDGVL--------------NY 252
Query: 268 T-TKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF 320
+L A +K P FI+NHD R +
Sbjct: 253 PIYWQLLYAFESSSGSISNLYNMIKSVASDCSD-----PTLLGNFIENHDNP---RFAKY 304
Query: 321 PSD--KVMLGYAYILTHPGTPCI 341
SD + +YI G P +
Sbjct: 305 TSDYSQAKNVLSYIFLSDGIPIV 327
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 8e-28
Identities = 64/327 (19%), Positives = 113/327 (34%), Gaps = 71/327 (21%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ------------GYMPGRLYDLDASKYGSQADLKSLIQA 99
L+ G+T +W+ P +++ GY + YG+ AD ++LI A
Sbjct: 66 LTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTN-PAYGTIADFQNLIAA 124
Query: 100 FRQKGIKCLADMVINH---RTAERKDGRGIYCIFEGGT--SDDRLDWGPSFICRGDKEYS 154
K IK + D NH ++++ +++ GT D F G ++S
Sbjct: 125 AHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFS 184
Query: 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FVKG 206
+ ++ D++H N V L D + ++G DG R + + K
Sbjct: 185 T--TENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMNAVKHMPFGWQKS 241
Query: 207 YAPSITKVYMENTSPDFAVGEKWD-SLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAF 265
+ ++ P F G+ + P+ AN+ G +
Sbjct: 242 FMAAVNNYK-----PVFTFGQWFLGVNEVSPENHKFANESGM---------------SLL 281
Query: 266 DFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL---------PQNAVTFIDNHDTGSTQR 316
DF ++ + + G +L + VTFIDNHD R
Sbjct: 282 DFRFAQKVRQVFRDNTDNMY-------GLKAMLEGSAADYAQVDDQVTFIDNHDME---R 331
Query: 317 LWPFPSD--KVMLGYAYILTHPGTPCI 341
++ K+ A+ LT G P I
Sbjct: 332 FHASNANRRKLEQALAFTLTSRGVPAI 358
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 62/321 (19%), Positives = 104/321 (32%), Gaps = 60/321 (18%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ-----------GYMPGRLYDLDASKYGSQADLKSLIQAF 100
L++ G+T +W+ P ++V GY + +G+ +D + L+ A
Sbjct: 63 LTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPN-PFFGTLSDFQRLVDAA 121
Query: 101 RQKGIKCLADMVINH---RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ 157
KGIK + D NH + +++ GT + + +
Sbjct: 122 HAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGGTTFSS 181
Query: 158 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FVKGYAP 209
D + D++H NP + + L D + ++G DG R D + K
Sbjct: 182 LEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMW-IDMGIDGIRMDAVKHMPFGWQKSLMD 240
Query: 210 SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFT- 268
I P F GE + + N + + DF
Sbjct: 241 EIDNYR-----PVFTFGEWFL----SENEVDANNHYFANESGM----------SLLDFRF 281
Query: 269 TKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322
+ + Q ++D+ + VTFIDNHD R
Sbjct: 282 GQKLRQVLRNNSDNWYGFNQMIQDTASAYDE-----VLDQVTFIDNHDMD---RFMIDGG 333
Query: 323 D--KVMLGYAYILTHPGTPCI 341
D KV + A +LT G P I
Sbjct: 334 DPRKVDMALAVLLTSRGVPNI 354
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 60/324 (18%), Positives = 108/324 (33%), Gaps = 56/324 (17%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--------GYMPGRLYDLDASKYGSQ 90
GG + + + + + G T +W+ P + + GY +Y L+ YG+
Sbjct: 39 GGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLN-ENYGTA 97
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
DLK+L A ++G+ + D+V NH + Y +F+ +S D D
Sbjct: 98 DDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYED 157
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210
+ + + G++ PD+D V+ E DW+ L + DG R D
Sbjct: 158 QTQVE---DCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRID----TVKH 210
Query: 211 ITKVYME--NTSPDF-AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAV-AAFD 266
+ K + N + +GE D + + +
Sbjct: 211 VQKDFWPGYNKAAGVYCIGEVLDGDP-------------------AYTCPYQNVMDGVLN 251
Query: 267 F-TTKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP 319
+ +L A + P TF++NHD R
Sbjct: 252 YPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPD-----STLLGTFVENHDNP---RFAS 303
Query: 320 FPSD--KVMLGYAYILTHPGTPCI 341
+ +D A+I+ + G P I
Sbjct: 304 YTNDIALAKNVAAFIILNDGIPII 327
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 61/330 (18%), Positives = 101/330 (30%), Gaps = 77/330 (23%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ-------------GYMPGRLYDLDASKYGSQADLKSLIQ 98
L+ G+T +W+P P +++ GY + +GS D ++LI
Sbjct: 66 LTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTN-PYFGSFTDFQNLIN 124
Query: 99 AFRQKGIKCLADMVINH--------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
IK + D NH T GG ++D + + G
Sbjct: 125 TAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHY---GG 181
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD-------- 202
++S D + D++ N + L + ++G DG R D
Sbjct: 182 TDFSS--YEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLDAVKHMPFG 238
Query: 203 FVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAV 262
+ K + SI P F GE + + G +
Sbjct: 239 WQKNFMDSILSYR-----PVFTFGEWFLG-------------TNEIDVNNTYFANESG-M 279
Query: 263 AAFDF-TTKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQ 315
+ DF ++ + Q ++ + + VTFIDNHD
Sbjct: 280 SLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNF-----INDMVTFIDNHDMD--- 331
Query: 316 RLWPFPS----DKVMLGYAYILTHPGTPCI 341
R F + V A+ LT G P I
Sbjct: 332 R---FYNGGSTRPVEQALAFTLTSRGVPAI 358
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 66/337 (19%), Positives = 109/337 (32%), Gaps = 65/337 (19%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ----GYMPGRLYDLDASKYGSQADLK 94
GG + + ++ G T +W P ++ A GY Y +D +YGS D
Sbjct: 144 GGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRID-PRYGSNEDFV 202
Query: 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
L R++G+ + D+V++H + + + D +++G F+ +
Sbjct: 203 RLSTEARKRGMGLIQDVVLSHIGKH-------HWWMKDLPTPDWINYGGKFVPTQHHRVA 255
Query: 155 DGQ--------GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD---- 202
N G + PD++ NP V L W G G R D
Sbjct: 256 VQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGY 315
Query: 203 ----FVKGYAPSITKVYMENTSPDF-AVGEKW--DSLSYGPDGKPDANQDGHRGALKDWV 255
F+ Y + Y P VG++W + AN DG+ L
Sbjct: 316 SDGAFLTEYTRRLMAEY-----PRLNMVGQEWSTRVPVVARWQRGKANFDGYTSHLP--- 367
Query: 256 QAAGGAVAAFDFTTKGILQAAVQGELW--------RLKDSNGKPPGFIGILPQNAVTFID 307
+ DF ++ A+ + P PQN V F
Sbjct: 368 -------SLMDFPLVDAMRNALSKTGEENGLNEVYETLSLDYLYPE-----PQNLVLFGG 415
Query: 308 NHDTGSTQR-LWPFPSD--KVMLGYAYILTHPGTPCI 341
NHD R D + + +++T P P
Sbjct: 416 NHDMA---RMFSAAGEDFDRWRMNLVFLMTMPRIPQF 449
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* Length = 471 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 3e-25
Identities = 66/328 (20%), Positives = 113/328 (34%), Gaps = 34/328 (10%)
Query: 28 QGFNWESSNKAGGWYNSLKNSIPD-LSNAGITHVWLPPPSQSVAPQ-----GYMPGRLYD 81
F W+ +N + + L G V + PP++ + Y
Sbjct: 15 HLFEWK--------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYI 66
Query: 82 LDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDW 141
++ ++ G ++ + + G++ D VINH T G G + + +
Sbjct: 67 IN-TRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPY 125
Query: 142 GPS-FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200
G F + N E D++ + V+ L D+MN + ++G G+R
Sbjct: 126 GSGDFHSPCEVNNYQDADNVRNCE-LVGLRDLNQGSDYVRGVLIDYMNHM-IDLGVAGFR 183
Query: 201 FDFVKGYAPSITKVY---MENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 257
D K +P V ++N + D+ + Y D A+
Sbjct: 184 VDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQE------VIDLGGEAISKNEYT 237
Query: 258 AGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT---GST 314
G V F F A G + + G G + +AV F+DNHD G +
Sbjct: 238 GFGCVLEFQFGVSLG-NAFQGGNQLKNLANWGPEWGLLE--GLDAVVFVDNHDNQRTGGS 294
Query: 315 QRLWPFPSDKVMLGYAYILTHP-GTPCI 341
Q L + A++L HP GT I
Sbjct: 295 QILTYKNPKPYKMAIAFMLAHPYGTTRI 322
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 66/324 (20%), Positives = 99/324 (30%), Gaps = 59/324 (18%)
Query: 52 LSNAGITHVWLPPPSQSVAPQGYMPGR---------LYDLDASKYGSQADLKSLIQAFRQ 102
L G+T +WL P ++ ++ +G+ +L+ Q
Sbjct: 61 LKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIE-EHFGNWTTFDTLVNDAHQ 119
Query: 103 KGIKCLADMVINH--------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD-KEY 153
GIK + D V NH T + G DD F GD +
Sbjct: 120 NGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDA--TKGYFHHNGDISNW 177
Query: 154 SDGQGNDDTGEDFQPA---PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK----G 206
D D+ N + + L+D L G DG R D VK G
Sbjct: 178 DDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQL-VAHGADGLRIDAVKHFNSG 236
Query: 207 YAPSITKVYMENTSPDF-AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAF 265
++ S+ + D VGE + D + + +G V F
Sbjct: 237 FSKSLADKLYQK--KDIFLVGEWYG----------DDPGTANHLEKVRYANNSGVNVLDF 284
Query: 266 DFTTKGILQAAVQGELW------RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP 319
D I + + + +N +TFIDNHD R
Sbjct: 285 DL-NTVIRNVFGTFTQTMYDLNNMVNQTGNEYKY-----KENLITFIDNHDMS---RFLS 335
Query: 320 FPSD--KVMLGYAYILTHPGTPCI 341
S+ + A+ILT GTP I
Sbjct: 336 VNSNKANLHQALAFILTSRGTPSI 359
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 71/310 (22%), Positives = 121/310 (39%), Gaps = 53/310 (17%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+ L + GIT ++L P +S + Y +++D +G + LK+LI +KGI+ +
Sbjct: 182 LDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVD-PHFGDKETLKTLIDRCHEKGIRVM 240
Query: 109 ADMVINHRTAERKDGRG---IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGED 165
D V NH G +++ G S DW F ++ + N DT
Sbjct: 241 LDAVFNHC------GYEFAPFQDVWKNGESSKYKDW---FHIHEFPLQTEPRPNYDTFAF 291
Query: 166 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FVKGYAPSITKVYME 217
P ++ NP V++ L D + E DGWR D F + + + +
Sbjct: 292 VPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALK-- 349
Query: 218 NTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GHRGALKDWVQAAGGAVAAFDFTTKGILQ 274
PD +GE W D++ + + DA + + + A ++A F +
Sbjct: 350 ---PDVYILGEIWHDAMPWLRGDQFDAVMNYPFTDGVLRFF--AKEEISARQFANQ---- 400
Query: 275 AAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQR-LWPFPSD--KVMLGYAY 331
+ + S + + A + +HD T R L D KV L + +
Sbjct: 401 ------MMHVLHSYPNN------VNEAAFNLLGSHD---TSRILTVCGGDIRKVKLLFLF 445
Query: 332 ILTHPGTPCI 341
LT G+PCI
Sbjct: 446 QLTFTGSPCI 455
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108 | Back alignment and structure |
|---|
Score = 99.8 bits (248), Expect = 5e-23
Identities = 38/225 (16%), Positives = 65/225 (28%), Gaps = 45/225 (20%)
Query: 25 LLFQGFNWESSNKAGGW---YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR--- 78
L+++GF+ + + +N GIT + P +S ++
Sbjct: 832 LIYEGFSNFQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDN 891
Query: 79 ------LYDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAER 120
YDL + KYG+ DL++ IQA ++ +AD+V N +A R
Sbjct: 892 GYAFTDRYDLGFNTPTKYGTDGDLRATIQALHHANMQVMADVVDNQVYNLPGKEVVSATR 951
Query: 121 KD--------------------GRGIYCIFEGGTSDDRLDW-GPSFICRGDKEYSDGQGN 159
G G Y G + L P +Y
Sbjct: 952 AGVYGNDDATGFGTQLYVTNSVGGGQYQEKYAGQYLEALKAKYPDLFEGKAYDYWYKNYA 1011
Query: 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
+D + D + + W G +V
Sbjct: 1012 NDGSNPYYTLSHGDRESIPADVAIKQWSAKYMNGTNVLGNGMGYV 1056
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 2e-08
Identities = 28/211 (13%), Positives = 56/211 (26%), Gaps = 37/211 (17%)
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL--------- 190
+ + DF A D+D+ NP VQ E +W+++L
Sbjct: 382 GYLKYGNNPLTPTTNSDYRQPGNAFDFLLANDVDNSNPVVQAENLNWLHYLMNFGTITAG 441
Query: 191 KTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGA 250
+ + FD R D V + + + V + A + H
Sbjct: 442 QDDANFDSIRIDAVDFIHNDTIQRTYDYLRDAYQVQQSE------------AKANQHISL 489
Query: 251 LKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL------------ 298
++ + A + + +AA + +
Sbjct: 490 VEAGLDAGTSTIHNDALIESNLREAATLSLTNEPGKNKPLTNMLQDVDGGTLITDHTQNS 549
Query: 299 ----PQNAVTFIDNHDTGSTQRLWPFPSDKV 325
+ I HD G +++ +D
Sbjct: 550 TENQATPNYSIIHAHDKGVQEKVGAAITDAT 580
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 1e-22
Identities = 70/311 (22%), Positives = 112/311 (36%), Gaps = 54/311 (17%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+ LS G+ V+ P ++ Y + +D ++G + LK L+ ++GI+ L
Sbjct: 178 LDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQID-PQFGDKDTLKKLVDLCHERGIRVL 236
Query: 109 ADMVINHRTAERKDGRG---IYCIFEGGTSDDRLDWGPSFICRGDK-EYSDGQGNDDTGE 164
D V NH GR + + G DW F R E DG DT
Sbjct: 237 LDAVFNHS------GRTFPPFVDVLKNGEKSKYKDW---FHIRSLPLEVVDGIPTYDTFA 287
Query: 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD--------FVKGYAPSITKVYM 216
P ++ +P V++ L + E G DGWR D F + + + +
Sbjct: 288 FEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQAN- 346
Query: 217 ENTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GHRGALKDWVQAAGGAVAAFDFTTKGIL 273
PD +GE W +S + + DA + A+ D+ A F+
Sbjct: 347 ----PDAYILGEVWHESSIWLEGDQFDAVMNYPFTNAVLDFF--IHQIADAEKFSFM--- 397
Query: 274 QAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQR-LWPFPSD--KVMLGYA 330
L + + + +D+HD T R L D K+ L
Sbjct: 398 -------LGKQLAGYPRQ------ASEVMFNLLDSHD---TARLLTQADGDKRKMKLAVL 441
Query: 331 YILTHPGTPCI 341
+ T+ GTPCI
Sbjct: 442 FQFTYFGTPCI 452
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 71/317 (22%), Positives = 115/317 (36%), Gaps = 67/317 (21%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+P L G+T ++ P S + Y +D ++G + L+ ++GIK +
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVDEAHRRGIKII 237
Query: 109 ADMVINH--------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160
D V NH R +K + Y DW F + N
Sbjct: 238 LDAVFNHAGDQFFAFRDVLQKGEQSRYK-----------DW---FFIEDFPVSKTSRTNY 283
Query: 161 DTGEDFQPA-PDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFD--------FVKGYAPS 210
+T PA P + NP V++ L D W++ G DGWR D F + +
Sbjct: 284 ETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ--GIDGWRLDVANEVDHAFWREFRRL 341
Query: 211 ITKVYMENTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GHRGALKDWVQAAGGAVAAFDF 267
+ + PD VGE W D+ + + D+ + R ++ + A G + A F
Sbjct: 342 VKSLN-----PDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFF--ATGEIHAERF 394
Query: 268 TTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQR-LWPFPSD--K 324
EL R + + Q +D+HD T+R L + K
Sbjct: 395 DA----------ELTRARMLYPEQ------AAQGLWNLLDSHD---TERFLTSCGGNEAK 435
Query: 325 VMLGYAYILTHPGTPCI 341
L + +T+ GTP I
Sbjct: 436 FRLAVLFQMTYLGTPLI 452
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 4e-20
Identities = 66/341 (19%), Positives = 108/341 (31%), Gaps = 56/341 (16%)
Query: 31 NWESSNKAGGWY----NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASK 86
+W+S G+ + + + N GI ++ P QS + Y Y +D
Sbjct: 40 DWDSMPTLQGYKGGDLWGIMEDLDYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVD-PM 98
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINH---RTAERKDGRGIYCIFEGGTSDDRLDWGP 143
G K L+ A Q+ IK + D V NH D E G ++W
Sbjct: 99 LGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVL------ENGPHSPWVNW-- 150
Query: 144 SFICRGDKEYSDGQGND---DTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGW 199
F G + P+ +H NP V++ + + WL + G DGW
Sbjct: 151 -FKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL--KFGIDGW 207
Query: 200 RFD---------FVKGYAPSITKVYMENTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GH 247
R D F + + + P+ VGE W DS + + D +
Sbjct: 208 RLDVPFEIKTPGFWQEFRDRTKAIN-----PEAYIVGEVWGDSRQWLDGTQFDGVMNYLF 262
Query: 248 RGALKDWV----QAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV 303
G + + + A ++ + + +
Sbjct: 263 AGPTIAFAAGDRVVLEQVQSRDYQPYPPLFAAEYATKIQEVLQLYPWE------IQLTQL 316
Query: 304 TFIDNHDTGSTQR-LWPFPSD--KVMLGYAYILTHPGTPCI 341
+ +HD T R + D V L +LT PG P I
Sbjct: 317 NLLASHD---TARLMTIAGGDIASVELSTLLLLTFPGAPSI 354
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 4e-20
Identities = 64/337 (18%), Positives = 112/337 (33%), Gaps = 50/337 (14%)
Query: 31 NWESSNKAGGWY----NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASK 86
WE+ G+ + +P L + G+ ++L P S A Y + +D
Sbjct: 34 PWEAPPTLRGFKGGTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVD-PI 92
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAER----KDGRGIYCIFEGGTSDDRLDWG 142
G L+ L++ G++ + D V NH T + + E G DW
Sbjct: 93 LGGNEALRHLLEVAHAHGVRVILDGVFNH-TGRGFFAFQH------LMENGEQSPYRDW- 144
Query: 143 PSFICRGDKEYS-DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWR 200
+ +G + N + P + P V++ L W+ G DGWR
Sbjct: 145 --YHVKGFPLKAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI--RFGVDGWR 200
Query: 201 FD---------FVKGYAPSITKVYMENTSPDFA-VGEKW-DSLSYGPDGKPDANQD-GHR 248
D F + + + P+ VGE W ++ + DA +
Sbjct: 201 LDVPNEIPDPTFWREFRQRVKGAN-----PEAYIVGEIWEEADFWLQGDMFDAVMNYPLA 255
Query: 249 GALKDWVQAAGGAVAAFDFTTKGILQAAVQGELW-RLKDSNGKPPGFIGILPQNAVTFID 307
A+ +V T G ++ RL+D G+ + + + +
Sbjct: 256 RAVLGFVGGEALDRDLAAQTGLGRIEPLQALAFSHRLEDLFGRYRPEV---VRAQMNLLT 312
Query: 308 NHDTGSTQR-LWPFPSD--KVMLGYAYILTHPGTPCI 341
+HDT R L + L A + PG P +
Sbjct: 313 SHDT---PRLLSLMRGSVERARLALALLFLLPGNPTV 346
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Length = 637 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 2e-19
Identities = 54/327 (16%), Positives = 99/327 (30%), Gaps = 69/327 (21%)
Query: 56 GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKG----IKCLADM 111
G ++L P ++ Y +D +G + L++LI + D
Sbjct: 205 GANILYLNPIFKAPTNHKYDTQDYMAVD-PAFGDNSTLQTLINDIHSTANGPKGYLILDG 263
Query: 112 VINH--RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE-YSDGQGNDDTGEDFQP 168
V NH + D + +G W + + Y+ G +
Sbjct: 264 VFNHTGDSHPWFDKYNNF-SSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSL------ 316
Query: 169 APDIDHLNP--RVQKELSDWMN-----WLKTEIGFDGWRFD------------------- 202
P +++ N V+ + + N +L DGWR D
Sbjct: 317 -PKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGNNGSDVTNHQ 375
Query: 203 FVKGYAPSITKVYMENTSPDFA-VGEKWDS----LSYGPDGKPDANQDGHRGALKDWVQA 257
+ ++ V + A +GE W + + G N DG + +W+
Sbjct: 376 IWSEFRNAVKGVN-----SNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQPVSEWITG 430
Query: 258 AGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQR- 316
+ +T L + + + Q+ + F+ NHD R
Sbjct: 431 KDYQNNSASISTTQFDSW-----LRGTRANYPTN------VQQSMMNFLSNHD---ITRF 476
Query: 317 LWPFPSD--KVMLGYAYILTHPGTPCI 341
D K L + +T+ GTP I
Sbjct: 477 ATRSGGDLWKTYLALIFQMTYVGTPTI 503
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 4e-19
Identities = 57/318 (17%), Positives = 99/318 (31%), Gaps = 70/318 (22%)
Query: 49 IPDLSNAGITHVWLPP--PSQSVAPQ-----GYMPGRLYDLDASKYGSQADLKSLIQAFR 101
+ + + G +WL P P V + Y ++ +YG+ AD K+L
Sbjct: 36 LQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGIN-PEYGTLADFKALTDRAH 94
Query: 102 QKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD------DRLDWGPSFICRGDKEYSD 155
+ G+K + D+V NH TS + +W F D +
Sbjct: 95 ELGMKVMLDIVYNH------------------TSPDSVLATEHPEW---FYHDADGQ--- 130
Query: 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFD--------FVKG 206
+ D+ D+D+ + + + D + W + DG+R D F
Sbjct: 131 ---LTNKVGDWSDVKDLDYGHHELWQYQIDTLLYWSQ---FVDGYRCDVAPLVPLDFWLE 184
Query: 207 YAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAF 265
+ Y P+ + E G + G+ G + A +
Sbjct: 185 ARKQVNAKY-----PETLWLAESA-----GSGFIEELRSQGYTGLSDSELYQAFDMTYDY 234
Query: 266 DFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV--TFIDNHDTGSTQRLWPFPSD 323
D + + R D + P N V F++NHD L ++
Sbjct: 235 DVFGDFKDYWQGRSTVERYVDLLQR---QDATFPGNYVKMRFLENHDNARMMSLMHSKAE 291
Query: 324 KVMLGYAYILTHPGTPCI 341
V +I G P I
Sbjct: 292 AVNN-LTWIFMQRGIPLI 308
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 5e-19
Identities = 59/337 (17%), Positives = 105/337 (31%), Gaps = 85/337 (25%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDAS-------KYGSQADLKSLIQAFR 101
I L + G+ ++L P S + Y D G+ D + L+Q
Sbjct: 271 IDHLEDLGVETIYLTPIFSSTSYHRY--------DTIDYKSIDKYLGTMEDFEKLVQVLH 322
Query: 102 QKGIKCLADMVINH--------RTAERKDGRGIYC---IFEGGTSDDRLDWGPSFICRGD 150
+ IK + D+ ++H A R+ Y F + ++ +I +
Sbjct: 323 SRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEE 382
Query: 151 KEYSDGQGNDDTGEDFQPA---------PDIDHLNPRVQKELSDWMN-WLKTEIGFDGWR 200
+ D + +H NPR D W+ G DG+R
Sbjct: 383 CRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWIDK--GIDGFR 440
Query: 201 FD--------FVKGYAPSITKVYMENTSPDFA-VGEKWDSLSYGPDGKPDANQDGH---- 247
D ++K Y I Y PDF +GE ++ P D D
Sbjct: 441 IDVAMGIHYSWMKQYYEYIKNTY-----PDFLVLGELAEN----PRIYMDYF-DSAMNYY 490
Query: 248 -RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFI 306
R A+ + + + +F ++ + + + +
Sbjct: 491 LRKAILELL--IYKRIDLNEFISR----------INNVYAYIPHYK------ALSLYNML 532
Query: 307 DNHDTGSTQR-LWPFPSDKVM-LGYAYILTHPGTPCI 341
+HD R ++K++ L Y I PG+P I
Sbjct: 533 GSHD---VPRIKSMVQNNKLLKLMYVLIFALPGSPVI 566
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* Length = 1039 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 1e-13
Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 37/187 (19%)
Query: 24 ALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPP---------SQSVAP 71
++++GF+ + ++ + + + GIT L P S+
Sbjct: 664 NVIYEGFSNFIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIID 723
Query: 72 QGYMPGRLYDL---DASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA---------- 118
GY YDL +KYGS DL++ +QA + G++ +AD V +
Sbjct: 724 NGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIYNLPGKEAVTVT 783
Query: 119 ------ERKDGRGI----YCIFEGGTSDDRLDWGPSFICRGDKEYSD--GQGNDDTGEDF 166
+ I Y G + + +G F+ KEY Q T
Sbjct: 784 RSDDHGTTWEVSPIKNVVYITNTIGGGEYQKKYGGEFLDTLQKEYPQLFSQVYPVTQTTI 843
Query: 167 QPAPDID 173
P+ I
Sbjct: 844 DPSVKIK 850
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* Length = 1039 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 6e-11
Identities = 35/214 (16%), Positives = 61/214 (28%), Gaps = 48/214 (22%)
Query: 134 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL--- 190
+ D + S ++ ++ G + G +F A DID+ NP VQ E +W+ +L
Sbjct: 209 VNSDLTKYANSDWRLMNRTATNIDGKNYGGAEFLLANDIDNSNPVVQAEELNWLYYLMNF 268
Query: 191 ------KTEIGFDGWRFD--------FVKGYAPSITKVYMENTSPD-----FAVGEKWDS 231
E FDG R D + Y S + E W
Sbjct: 269 GTITGNNPEANFDGIRVDAVDNVDVDLLSIARDYFNAAYNMEQSDASANKHINILEDWG- 327
Query: 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE------LWRLK 285
+V G D + + + G L +L
Sbjct: 328 -----------------WDDPAYVNKIGNPQLTMDDRLRNAIMDTLSGAPDKNQALNKLI 370
Query: 286 DS--NGKPPGFIGILPQNAVTFIDNHDTGSTQRL 317
+ + F+ HD+ + ++
Sbjct: 371 TQSLVNRANDNTENAVIPSYNFVRAHDSNAQDQI 404
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* Length = 441 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 64/339 (18%), Positives = 111/339 (32%), Gaps = 117/339 (34%)
Query: 56 GITHVWLPPPSQSVAPQGY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107
GI VWL P S++ GY +YGS+ + K +I+AF GIK
Sbjct: 36 GIDFVWLMPVFSSISFHGYDVVDFYSFKA---------EYGSEREFKEMIEAFHDSGIKV 86
Query: 108 LADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI--CRGDKEY------SDGQGN 159
+ D+ I+H T W F +GD Y ++ + +
Sbjct: 87 VLDLPIHH------------------TGFLH-TW---FQKALKGDPHYRDYYVWANKETD 124
Query: 160 DDTGEDF--QPA------------------PDIDHLNPRVQKELSDWMN-WLKTEIGFDG 198
D ++ + PD+++ NP+V E+ + L ++G DG
Sbjct: 125 LDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLL--DMGVDG 182
Query: 199 WRFDFVKGYAPSITKVYMENTS---------PDFAVGEKWDSLSYGPDGKPDANQDGHRG 249
+RFD K + +N + E W
Sbjct: 183 FRFDAAKH----MRDTIEQNVRFWKYFLSDLKGIFLAEIWAEARM--------------- 223
Query: 250 ALKDWVQAAGGAVAAFDFT-TKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV--TFI 306
+ +F + I +A + L +S + ++ ++ + F
Sbjct: 224 ----VDEHGRIFGYMLNFDTSHCIKEAVWKENTRVLIESIER-----AVIAKDYLPVNFT 274
Query: 307 DNHDTGSTQRLWP----FPSDKVMLGYAYILTHPGTPCI 341
NHD RL F +K+ L + + T PG P +
Sbjct: 275 SNHD---MSRLASFEGGFSKEKIKLSISILFTLPGVPLV 310
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* Length = 655 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-10
Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 29/182 (15%)
Query: 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFR 101
++ + L G+ ++ L P + + GY + G+ DL +L +A R
Sbjct: 113 VEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVR-PDLGTMDDLSALARALR 171
Query: 102 QKGIKCLADMVINHRTAE----------RKDGRGIYCIFEGGTSDD-----RLDWGPSFI 146
+GI + D+V+NH E R + +F D + P F
Sbjct: 172 GRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPDFA 231
Query: 147 CRGDKEYSDGQGNDDTGE------DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200
G+ + + G + G +Q D++ NP V E D + +L G + +R
Sbjct: 232 -PGNFSWDEEIGEGEGGWVWTTFNSYQ--WDLNWANPDVFLEFVDIILYL-ANRGVEVFR 287
Query: 201 FD 202
D
Sbjct: 288 LD 289
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A Length = 644 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 3e-09
Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 27/179 (15%)
Query: 45 LKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
+ +P L G+ ++ L P G+ ++ GS DL +L R
Sbjct: 108 VAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVE-PSLGSNDDLVALTSRLR 166
Query: 102 QKGIKCLADMVINH--------RTAERKD--GRGIYCIFEGGTSDDRLDWGPSF-ICRGD 150
+ GI AD V+NH + A D Y F T D + +
Sbjct: 167 EAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPD--RYEATLGQVFPH 224
Query: 151 KEYSDGQGNDDTGE-------DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
+ DDT + +Q D++ NP V +++ M L +G + +R D
Sbjct: 225 TAPGNFTWVDDTAQWMWTTFYPYQ--WDLNWSNPAVFGDMALAMLRL-ANLGVEAFRLD 280
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 3e-09
Identities = 46/353 (13%), Positives = 88/353 (24%), Gaps = 83/353 (23%)
Query: 32 WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP-----------PSQSVAPQGYMPGRLY 80
+ + G + + +P ++ G V+LPP + +++ G G +
Sbjct: 242 EGTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPW 301
Query: 81 DLDAS---------KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFE 131
+ + G+ D + + G++ D +
Sbjct: 302 AIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLGLEIALDFALQC---------------- 345
Query: 132 GGTSDDRL-----DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDW 186
+ D +W F R D + + +D P D + E
Sbjct: 346 --SPDHPWVHKHPEW---FHHRPDGTIAHAENPPKKYQDIYP-IAFDADPDGLATETVRI 399
Query: 187 MN-WLKTEIGFDGWRFD---FVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD 241
+ W+ + G +R D + T PD + E + P
Sbjct: 400 LRHWM--DHGVRIFRVDNPHTKPVAFWERVIADINGTDPDVIFLAEAFTR----PAMMAT 453
Query: 242 ANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWR-LKDSNGKPPGFIGILPQ 300
Q G F + + EL L + +G+ ++
Sbjct: 454 LAQIG------------------FQQSYTYFTWRNTKQELTEYLTELSGEAASYM----- 490
Query: 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353
F N L + T T I PL
Sbjct: 491 -RPNFFANTPDILHAYLQHGGRPAFEVRAVLAATLSPTWGIYSGYELCENTPL 542
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* Length = 628 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 6e-09
Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 30/180 (16%)
Query: 45 LKNSIPDLSNAGITHVWLPP--PS-QSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101
LK+ IP G+T++ L P + + GY D++ G+ DL+ +I A
Sbjct: 115 LKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVN-PALGTIGDLREVIAALH 173
Query: 102 QKGIKCLADMVINHRTAE----------RKDGRGIYCIFEGGTSDDRL--DWGPSFICRG 149
+ GI + D + NH + E Y IF D+ F
Sbjct: 174 EAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIF---P 230
Query: 150 DKEYSDGQGNDDTGE-------DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
D+ + G FQ D+++ NP V + ++ M +L +G D R D
Sbjct: 231 DQHPGGFS-QLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-ANLGVDILRMD 286
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 Length = 488 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 67/339 (19%), Positives = 99/339 (29%), Gaps = 105/339 (30%)
Query: 56 GITHVWLPPPSQSVAPQ--GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKGI 105
G+ +WL P +S P GY P YG+ D L++A Q+GI
Sbjct: 48 GVNGIWLMPIFKS--PSYHGYDVTDYYKINP---------DYGTLEDFHKLVEAAHQRGI 96
Query: 106 KCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI-CRGDKE--YSD------- 155
K + D+ INH TS+ W F+ DK Y D
Sbjct: 97 KVIIDLPINH------------------TSERH-PW---FLKASRDKNSEYRDYYVWAGP 134
Query: 156 GQGNDDTGEDFQPA-----------------PDIDHLNPRVQKELSDWMN-WLKTEIGFD 197
+T D PD+++ NP VQ+++ WL + G D
Sbjct: 135 DTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWL--KQGVD 192
Query: 198 GWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPD------ANQDGHRGAL 251
G+R D P W+ + A
Sbjct: 193 GFRLDGAMHIFP-------PAQYDK--NFTWWEKFRQEIEEVKPVYLVGEVWDISETVAP 243
Query: 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGE-----LWRLKDSNGKPPGFIGILPQNAVTFI 306
G + F+F + A + + K G +G F+
Sbjct: 244 ----YFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFL 299
Query: 307 DNHDTGSTQR----LWPFPSDKVMLGYAYILTHPGTPCI 341
NHD Q +K + + LT PG P I
Sbjct: 300 TNHD----QNRILDQLGQDRNKARVAASIYLTLPGNPFI 334
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} Length = 704 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 46/210 (21%)
Query: 56 GITHVWLPPPSQSVAPQ---GYMPGRLYDLDAS-------KYGSQADLKSLIQAFRQKGI 105
G+TH++L P ++ P GY D + G + + LI + KG+
Sbjct: 28 GVTHLYLSPVLKA-RPGSTHGY--------DVVDYNTINDELGGEEEYIRLIDEAKSKGL 78
Query: 106 KCLADMVINHRTA----------ERKDGRG----IYCIFEGGTSDDRL-DWGPSFICRGD 150
+ D+V NH A K GR Y F R+ G +
Sbjct: 79 GIIQDIVPNH-MAVHHTNWRLMDVLKKGRHSRYYNYFDFYEEEEKIRIPILGDRNF-KIT 136
Query: 151 KEYSDGQGN--DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208
+ + + + + ++ K + + F
Sbjct: 137 YVNDEPYLDYYGNLFPINDEGRNYLNDIEKLLKVQYYELVDWRDYPS-YRRFFA-----V 190
Query: 209 PSITKVYMENTSPDFAVGEKWDSLSYGPDG 238
+ V E LS+ DG
Sbjct: 191 NELIAVRQEL--EWVFEDSHSKILSFEVDG 218
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* Length = 504 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 33/181 (18%)
Query: 45 LKNSIPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102
+ + + + V + P A G+ P +D + GS D+ L
Sbjct: 22 MTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVD-ERLGSWDDVAEL-----S 75
Query: 103 KGIKCLADMVINHRTAE-------RKDG-----RGIYCIFEGGTSDDRLDWGPSFICRGD 150
K + D ++NH + E G ++ + + + I R
Sbjct: 76 KTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYR-P 134
Query: 151 KEYSDGQGNDDTGE---------DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201
+ G+ Q DID + + + L + + R
Sbjct: 135 RPGLPFTHYKFAGKTRLVWVSFTPQQ--VDIDTDSDKGWEYLMSIFDQM-AASHVSYIRL 191
Query: 202 D 202
D
Sbjct: 192 D 192
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 Length = 720 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-05
Identities = 43/310 (13%), Positives = 87/310 (28%), Gaps = 78/310 (25%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL-DASK----YGSQADLKSLIQAFRQK 103
+ + G++H++L P + G G YD+ D S+ G + + + LI+
Sbjct: 23 LWYFXDLGVSHLYLSPVLMASP--GSNHG--YDVIDHSRINDELGGEKEYRRLIETAHTI 78
Query: 104 GIKCLADMVINH---------------------------------RTAERKDGRGIYCIF 130
G+ + D+V NH + G + +
Sbjct: 79 GLGIIQDIVPNHMAVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLDTVI 138
Query: 131 EGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGE--DFQPAPDIDHLNPRVQKELSDWMN 188
G D F+ + + +D + Q + NP + D
Sbjct: 139 SKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTLMSWKNPPSYRRFFDVNT 198
Query: 189 WLK----------------TEIGFDGWRFDFVKG-YAPSITKVYMENTSPD--------F 223
+ ++ DG+R D + G Y P + + +
Sbjct: 199 LIGVNVEXDHVFQESHSXILDLDVDGYRIDHIDGLYDPEKYINDLRSIIKNXIIIVEKIL 258
Query: 224 AVGEKWDSLSYGPDGKPDANQ-----DGHRGALKDWVQAAGGAVAAFDFTT----KGILQ 274
E+ S G G N + ++ + + + + I+
Sbjct: 259 GFQEELKLNSDGTTGYDFLNYSNLLFNFNQEIMDSIYENFTAEKISISESIXKIKAQIID 318
Query: 275 AAVQGELWRL 284
E+ RL
Sbjct: 319 ELFSYEVXRL 328
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Length = 543 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
G+ +WL P S P GY +G+ AD+ +L+ + +G
Sbjct: 44 GVMAIWLSPVYDS--PMDDNGYDIANYEAIAD---------IFGNMADMDNLLTQAKMRG 92
Query: 105 IKCLADMVINH 115
IK + D+V+NH
Sbjct: 93 IKIIMDLVVNH 103
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
G +W+ P S PQ GY P YG+ D +LI+ + G
Sbjct: 53 GADAIWISPFYDS--PQDDMGYDIANYEKVWP---------TYGTNEDCFALIEKTHKLG 101
Query: 105 IKCLADMVINH 115
+K + D+VINH
Sbjct: 102 MKFITDLVINH 112
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 Length = 558 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
GI +WL P +S P GY M ++G+ D L+ ++
Sbjct: 44 GIDVIWLSPVYES--PNDDNGYDISDYCKIMN---------EFGTMEDWDELLHEMHERN 92
Query: 105 IKCLADMVINH 115
+K + D+V+NH
Sbjct: 93 MKLMMDLVVNH 103
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Length = 570 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
GI +W+ P S P GY M +YG+ D SL+ +++
Sbjct: 58 GIDAIWINPHYDS--PNTDNGYDISNYRQIMK---------EYGTMEDFDSLVAEMKKRN 106
Query: 105 IKCLADMVINH 115
++ + D+VINH
Sbjct: 107 MRLMIDVVINH 117
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
G+ VW+ P +S P GY M ++G+ D L+ ++G
Sbjct: 44 GVDIVWICPIYRS--PNADNGYDISDYYAIMD---------EFGTMDDFDELLAQAHRRG 92
Query: 105 IKCLADMVINH 115
+K + D+VINH
Sbjct: 93 LKVILDLVINH 103
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* Length = 557 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 22/71 (30%)
Query: 56 GITHVWLPPPSQSVAPQ---GY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKG 104
GI +W+ P S P GY M +YG+ D L+ +++G
Sbjct: 45 GIDAIWINPHYAS--PNTDNGYDISDYREVMK---------EYGTMEDFDRLMAELKKRG 93
Query: 105 IKCLADMVINH 115
++ + D+VINH
Sbjct: 94 MRLMVDVVINH 104
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Length = 669 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 56 GITHVWLPPPSQSVAPQGY--------MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107
G+ +WL P ++ GY P + G+++D L+ +GIK
Sbjct: 73 GVKALWLSPIHPCMSYHGYDVTDYTKVNP---------QLGTESDFDRLVTEAHNRGIKI 123
Query: 108 LADMVINH 115
D V+NH
Sbjct: 124 YLDYVMNH 131
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Length = 424 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 52 LSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
LS+ + + L P ++ + L +D +GS+ D SL+Q+ ++K I+ +
Sbjct: 45 LSSLKVKGLVLGPIHKN--QKDDVAQ--TDLLQID-PNFGSKEDFDSLLQSAKKKSIRVI 99
Query: 109 ADMVINH 115
D+ N+
Sbjct: 100 LDLTPNY 106
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 6e-04
Identities = 22/187 (11%), Positives = 57/187 (30%), Gaps = 22/187 (11%)
Query: 49 IPDLSNAGITHVWLPP--PSQSVAPQGYMPG------------RLYDLDASKYGSQADLK 94
+P + + G ++L P + +G P R +D + + K
Sbjct: 126 LPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFK 185
Query: 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
+ ++A GI+ + D + + R F ++ D+ P +
Sbjct: 186 AFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFKVP 245
Query: 155 DGQGNDDTG-------EDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207
D + + + ++P+ +++ + E+ + G+
Sbjct: 246 DEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNI-LELIVKEFGIITPPGF 304
Query: 208 APSITKV 214
+ I
Sbjct: 305 SDLINDP 311
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 358 | |||
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 100.0 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 100.0 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 100.0 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 100.0 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 100.0 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 100.0 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 100.0 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 100.0 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 100.0 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 100.0 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 100.0 | |
| 4aef_A | 645 | Neopullulanase (alpha-amylase II); hydrolase, ther | 100.0 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 100.0 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 100.0 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 100.0 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 100.0 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 100.0 | |
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 100.0 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 100.0 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 100.0 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 100.0 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 100.0 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 100.0 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 100.0 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 100.0 | |
| 4aie_A | 549 | Glucan 1,6-alpha-glucosidase; hydrolase, glycoside | 100.0 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 100.0 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 100.0 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 100.0 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 100.0 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 100.0 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 100.0 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 100.0 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 100.0 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 100.0 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 100.0 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 100.0 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 100.0 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 100.0 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 100.0 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 100.0 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 100.0 | |
| 2e8y_A | 718 | AMYX protein, pullulanase; multiple domain, beta-a | 100.0 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 100.0 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 100.0 | |
| 2wan_A | 921 | Pullulanase; hydrolase, glycoside hydrolase, polys | 100.0 | |
| 2vr5_A | 718 | Glycogen operon protein GLGX; hydrolase, glycosida | 100.0 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 100.0 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 100.0 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 100.0 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 3vgf_A | 558 | Malto-oligosyltrehalose trehalohydrolase; alpha/be | 100.0 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 100.0 | |
| 2wsk_A | 657 | Glycogen debranching enzyme; carbohydrate metaboli | 100.0 | |
| 1bf2_A | 750 | Isoamylase; hydrolase, glycosidase, debranching en | 100.0 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 100.0 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 100.0 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 3aml_A | 755 | OS06G0726400 protein; starch-branching, transferas | 100.0 | |
| 2fhf_A | 1083 | Pullulanase; multiple domain, beta-alpha-barrel, a | 100.0 | |
| 4aio_A | 884 | Limit dextrinase; hydrolase, pullulanase, glycosid | 100.0 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 100.0 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 100.0 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.95 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.93 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.9 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.89 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.88 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.59 | |
| 3mi6_A | 745 | Alpha-galactosidase; NESG, structural genomics, PS | 98.6 | |
| 2yfo_A | 720 | Alpha-galactosidase-sucrose kinase agask; hydrolas | 98.52 | |
| 2xn2_A | 732 | Alpha-galactosidase; hydrolase, glycosidase; HET: | 98.25 | |
| 1tz7_A | 505 | 4-alpha-glucanotransferase; (beta, alpha)8- barrel | 98.1 | |
| 1zy9_A | 564 | Alpha-galactosidase; TM1192, struc genomics, joint | 98.06 | |
| 1esw_A | 500 | Amylomaltase; (beta,alpha)8-barrel, glucanotransfe | 98.01 | |
| 1x1n_A | 524 | 4-alpha-glucanotransferase; disproportionating enz | 97.91 | |
| 4fnq_A | 729 | Alpha-galactosidase AGAB; glycoside hydrolase, hyd | 97.69 | |
| 2f2h_A | 773 | Putative family 31 glucosidase YICI; BETA8alpha8 b | 97.49 | |
| 1qnr_A | 344 | Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt | 97.49 | |
| 3vmn_A | 643 | Dextranase; TIM barrel, immunoglobrin fold, greek- | 97.43 | |
| 4ba0_A | 817 | Alpha-glucosidase, putative, ADG31B; hydrolase; HE | 97.13 | |
| 3lpp_A | 898 | Sucrase-isomaltase; glycoside hydrolase family 31, | 97.1 | |
| 2g3m_A | 693 | Maltase, alpha-glucosidase; hydrolase, glycoside h | 97.02 | |
| 3n9k_A | 399 | Glucan 1,3-beta-glucosidase; aromatic entranceway/ | 96.68 | |
| 3l4y_A | 875 | Maltase-glucoamylase, intestinal; glycoside hydrol | 96.67 | |
| 3cc1_A | 433 | BH1870 protein, putative alpha-N-acetylgalactosami | 96.59 | |
| 3nsx_A | 666 | Alpha-glucosidase; structural genomics, PSI-2, pro | 96.49 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 96.17 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 96.16 | |
| 2xvl_A | 1020 | Alpha-xylosidase, putative, XYL31A; hydrolase, gly | 96.16 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 96.15 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 96.13 | |
| 3civ_A | 343 | Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. | 95.56 | |
| 3vup_A | 351 | Beta-1,4-mannanase; TIM barrel, digestive fluid, H | 95.27 | |
| 1bqc_A | 302 | Protein (beta-mannanase); glycosyl hydrolase, fami | 95.19 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 95.14 | |
| 1ece_A | 358 | Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. | 95.05 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 95.01 | |
| 3jug_A | 345 | Beta-mannanase; TIM-barrel, glycosidase, hydrolase | 94.86 | |
| 3gyc_A | 393 | Putative glycoside hydrolase; YP_001304622.1, stru | 94.77 | |
| 3nco_A | 320 | Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 | 94.66 | |
| 3pzt_A | 327 | Endoglucanase; alpha/beta barrel, glycosyl hydrola | 94.64 | |
| 2whl_A | 294 | Beta-mannanase, baman5; glycoside hydrolase, hydro | 94.61 | |
| 3icg_A | 515 | Endoglucanase D; cellulase, xylanase, carbohydrate | 94.45 | |
| 1uuq_A | 440 | Mannosyl-oligosaccharide glucosidase; hydrolase, m | 94.44 | |
| 2c0h_A | 353 | Mannan endo-1,4-beta-mannosidase; hydrolase, signa | 94.28 | |
| 1tvn_A | 293 | Cellulase, endoglucanase G; glycoside hydrolase, C | 94.26 | |
| 3pzg_A | 383 | Mannan endo-1,4-beta-mannosidase. glycosyl hydrol | 94.25 | |
| 3ndz_A | 345 | Endoglucanase D; cellotriose, xylanase, carbohydra | 94.15 | |
| 1edg_A | 380 | Endoglucanase A; family A, cellulases, xylanases, | 94.1 | |
| 1vjz_A | 341 | Endoglucanase; TM1752, structural genomics, JCSG, | 94.02 | |
| 2y8k_A | 491 | Arabinoxylanase, carbohydrate binding family 6; hy | 93.95 | |
| 3n12_A | 333 | Chitinase A, chinctu2; zinc atoms, complex, hydrol | 93.89 | |
| 3qr3_A | 340 | Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A | 93.88 | |
| 3ebv_A | 302 | Chinitase A; chitinase A, CHIA, glycosidase, struc | 93.87 | |
| 1kwg_A | 645 | Beta-galactosidase; TIM barrel, glycoside hydrolas | 93.83 | |
| 3qho_A | 458 | Endoglucanase, 458AA long hypothetical endo-1,4-be | 93.72 | |
| 1ceo_A | 343 | Cellulase CELC; glycosyl hydrolase, family A/5 of | 93.69 | |
| 1rh9_A | 373 | Endo-beta-mannanase; endo-beta-mannase, retaining, | 93.47 | |
| 3aof_A | 317 | Endoglucanase; glycosyl hydrolase family 5, cellul | 93.45 | |
| 3l55_A | 353 | B-1,4-endoglucanase/cellulase; putative beta-1,4-e | 93.4 | |
| 3tty_A | 675 | Beta-GAL, beta-galactosidase; TIM barrel, glycosid | 93.17 | |
| 1wky_A | 464 | Endo-beta-1,4-mannanase; TIM barrel, catalytic dom | 93.11 | |
| 3ayr_A | 376 | Endoglucanase; TIM barrel, hydrolase, carbohydrate | 93.04 | |
| 2jep_A | 395 | Xyloglucanase; family 5, plant cell WALL, hydrolas | 92.94 | |
| 1g01_A | 364 | Endoglucanase; alpha/beta barrel, TIM barrel, hydr | 92.92 | |
| 3a24_A | 641 | Alpha-galactosidase; glycoside hydrolase family 97 | 92.73 | |
| 2aam_A | 309 | Hypothetical protein TM1410; structural genomics, | 92.51 | |
| 1h1n_A | 305 | Endo type cellulase ENGI; hydrolase, glycosyl hydr | 92.45 | |
| 1uas_A | 362 | Alpha-galactosidase; TIM-barrel, beta-alpha-barrel | 92.45 | |
| 2ki0_A | 36 | DS119; beta-alpha-beta, de novo protein; NMR {Synt | 92.38 | |
| 1egz_A | 291 | Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL | 92.19 | |
| 3ozo_A | 572 | N-acetylglucosaminidase; beta-N-acetyl-D-hexosamin | 92.12 | |
| 2ebn_A | 289 | Endo-beta-N-acetylglucosaminidase F1; hydrolase(gl | 92.09 | |
| 3a21_A | 614 | Putative secreted alpha-galactosidase; beta-alpha- | 92.05 | |
| 2osx_A | 481 | Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel | 91.82 | |
| 3a5v_A | 397 | Alpha-galactosidase; beta/alpha barrel, N-glycosyl | 91.58 | |
| 2x2h_A | 1027 | Alpha-1,4-glucan lyase isozyme 1; anhydrofructose | 91.58 | |
| 2cks_A | 306 | Endoglucanase E-5; carbohydrate metabolism, polysa | 91.57 | |
| 3poh_A | 451 | Endo-beta-N-acetylglucosaminidase F1; TIM barrel, | 91.56 | |
| 4axn_A | 328 | Chitinase C1; hydrolase; 1.68A {Serratia marcescen | 91.56 | |
| 7a3h_A | 303 | Endoglucanase; hydrolase, cellulose degradation, g | 91.46 | |
| 4f9d_A | 618 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; | 91.27 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 91.07 | |
| 4awe_A | 387 | Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana | 90.8 | |
| 2d73_A | 738 | Alpha-glucosidase SUSB; glycoside hydrolase family | 90.8 | |
| 1edt_A | 271 | Endo-beta-N-acetylglucosaminidase H, endo H; hydro | 89.99 | |
| 1szn_A | 417 | Alpha-galactosidase; (beta/alpha)8 barrel,TWO doma | 89.8 | |
| 1jak_A | 512 | Beta-N-acetylhexosaminidase; glycoside hydrolase, | 89.7 | |
| 2w61_A | 555 | GAS2P, glycolipid-anchored surface protein 2; glyc | 89.44 | |
| 2gjx_A | 507 | Beta-hexosaminidase alpha chain; beta-hexosaminida | 89.25 | |
| 3eyp_A | 469 | Putative alpha-L-fucosidase; structural genomics, | 89.13 | |
| 2zxd_A | 455 | Alpha-L-fucosidase, putative; TIM barrel, hydrolas | 89.03 | |
| 4hty_A | 359 | Cellulase; (alpha/beta)8 barrel, family 5 endogluc | 88.97 | |
| 3rcn_A | 543 | Beta-N-acetylhexosaminidase; structural genomics, | 87.68 | |
| 3ian_A | 321 | Chitinase; structural genomics, hydrolase, glycosi | 87.58 | |
| 1eok_A | 290 | Endo-beta-N-acetylglucosaminidase F3; alpha/beta-b | 87.32 | |
| 3ues_A | 478 | Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr | 87.14 | |
| 3cz8_A | 319 | Putative sporulation-specific glycosylase YDHD; st | 86.71 | |
| 2wvv_A | 450 | Alpha-L-fucosidase; alpha-L-fucose, hydrolase, gly | 86.0 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 85.8 | |
| 1now_A | 507 | Beta-hexosaminidase beta chain; (beta/alpha)8-barr | 85.53 | |
| 2cho_A | 716 | Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro | 85.01 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 85.0 | |
| 2y8v_A | 290 | CHIC, class III chitinase, putative; afchic, hydro | 84.92 | |
| 3gh5_A | 525 | HEX1, beta-hexosaminidase; beta-N-acetylhexosamini | 84.63 | |
| 4ac1_X | 283 | Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, g | 84.21 | |
| 3top_A | 908 | Maltase-glucoamylase, intestinal; membrane, hydrol | 84.16 | |
| 4h41_A | 340 | Putative alpha-L-fucosidase; hydrolase, carbohydra | 83.67 | |
| 3fnd_A | 312 | Chitinase; TIM-barrel, structural genomics, PSI-2, | 83.58 | |
| 3kzs_A | 463 | Glycosyl hydrolase family 5; structural genomics, | 83.46 | |
| 1yht_A | 367 | DSPB; beta barrel, hydrolase; 2.00A {Aggregatibact | 82.31 | |
| 3d3a_A | 612 | Beta-galactosidase; protein structure initiative I | 82.22 | |
| 3obe_A | 305 | Sugar phosphate isomerase/epimerase; structural ge | 81.97 | |
| 3thd_A | 654 | Beta-galactosidase; TIM-barrel domain, glycosyl hy | 80.21 | |
| 3gza_A | 443 | Putative alpha-L-fucosidase; NP_812709.1, structur | 80.13 |
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-70 Score=521.72 Aligned_cols=326 Identities=64% Similarity=1.210 Sum_probs=274.8
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~ 102 (358)
++|++|+|+||++++++|||+||+++|+|||+||||+|||+||++++++|||+|.||++||+|+|||++||++||++||+
T Consensus 1 ~~v~~~~F~~d~~~d~~G~~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~ 80 (405)
T 1ht6_A 1 HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHG 80 (405)
T ss_dssp CCCEEECCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHH
T ss_pred CccEEEeEEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 018278 103 KGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE 182 (358)
Q Consensus 103 ~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~ 182 (358)
+||+||+|+|+||++.+|+.+.+.|+.|.+..+..+.+|.....+.+...|.++.+++..++++..+||||++||+||++
T Consensus 81 ~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~ 160 (405)
T 1ht6_A 81 KGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRE 160 (405)
T ss_dssp TTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHH
T ss_pred CCCEEEEEECcCcccCCCCCCCCCcccCCCCCcCCCCCCCCccccCCCCCcCCCCCcccCCCCcCcCCccCcCCHHHHHH
Confidence 99999999999999999876677788888766666677876544544456666666777788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCC--
Q 018278 183 LSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG-- 260 (358)
Q Consensus 183 l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 260 (358)
|++++++|++++||||||+|+|++++.+||++++++.+|.+++||+|...++.+.+.++|+...+.+.+..|+...++
T Consensus 161 i~~~~~~w~~~~gvDGfR~D~~~~~~~~f~~~~~~~~~p~~~igE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~g~~~ 240 (405)
T 1ht6_A 161 LKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAA 240 (405)
T ss_dssp HHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHCCSCEEECCCCCCCBCTTSSBCSCCHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccCCCEEEEeccccCCHHHHHHHHHhhCCceEEEEeccCCcccCccccccccchhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999998889889999998755443344555432235677788876443
Q ss_pred -ceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCee
Q 018278 261 -AVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTP 339 (358)
Q Consensus 261 -~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P 339 (358)
...+|||++...+..++.++...+.+......+..+..|.+.++|++|||+.|+.+......++.++|++++||+||+|
T Consensus 241 ~~~~vfdf~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~fl~nHD~~r~~~~~~~~~~~~~~a~a~llt~pG~P 320 (405)
T 1ht6_A 241 SAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIP 320 (405)
T ss_dssp SSEEEECHHHHHHHHHHTTTCGGGGSCTTSSCSSHHHHCGGGEEEESCCTTTSTTTCSSCCCGGGHHHHHHHHHHSSSEE
T ss_pred ccceeechhhHHHHHHHHhhhHHHHHhhhcccchhhhcChhhhhhccCCcCCccccccccCcHHHHHHHHHHHHhCCCcc
Confidence 3445999998888888766666665433322222333567889999999999998877667788999999999999999
Q ss_pred eeecCcccc
Q 018278 340 CIVISVTYP 348 (358)
Q Consensus 340 ~IyyGdE~G 348 (358)
+||||+|++
T Consensus 321 ~iy~G~e~~ 329 (405)
T 1ht6_A 321 CIFYDHFFN 329 (405)
T ss_dssp EEEHHHHHT
T ss_pred eEEcCCCcC
Confidence 999999975
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-62 Score=472.59 Aligned_cols=300 Identities=23% Similarity=0.301 Sum_probs=235.2
Q ss_pred ceEEEeee---cCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 018278 24 ALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (358)
Q Consensus 24 ~v~~q~F~---~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~ 100 (358)
.||||+|. -+++++++|||+||+++|||||+||||+|||+||++++++|||++.||++|| |+|||++||++||++|
T Consensus 1 ~viYei~~~~F~~~~~~g~Gd~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~GY~~~dy~~id-p~~Gt~~df~~lv~~a 79 (441)
T 1lwj_A 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFK-AEYGSEREFKEMIEAF 79 (441)
T ss_dssp CCEEEECHHHHCCSSSSSSCCHHHHHHTHHHHHHTTCCEEEECCCEECSSSSCCSCSEEEEEC-TTTCCHHHHHHHHHHH
T ss_pred CeEEEEehHHhcCCCCCCccCHHHHHHhhHHHHHcCCCEEEeCCCcCCCCCCCCCcccccccC-cccCCHHHHHHHHHHH
Confidence 37888874 1566778899999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHcCCEEEEEeecccccccCCC---------CCcceeeccCCCCCCCCCCCCCcccCCCCccCCC-CCCCCCCCCCCCCC
Q 018278 101 RQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDG-QGNDDTGEDFQPAP 170 (358)
Q Consensus 101 H~~Gi~VilD~V~NH~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 170 (358)
|++||+||+|+|+||+|.+|++ +..+|+.|.+... .+.....++....|... .++++.++++..+|
T Consensus 80 H~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~y~d~y~~~~~~~----~~~~~~~~~~~~~w~~~~~~~~y~~~f~~~~p 155 (441)
T 1lwj_A 80 HDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKET----DLDERREWDGEKIWHPLEDGRFYRGLFGPFSP 155 (441)
T ss_dssp HHTTCEEEEEECTTBCCTTCHHHHHHHTTCHHHHTTBCBCCTTS----CTTCBCSSSCCBCEEECTTSCEEECTTCTTSC
T ss_pred HHCCCEEEEEeCCCcccCchHHHHHHhccCCCCcceeeecCCCC----CCcccccCCCccccccccCCceEEcccCCCCC
Confidence 9999999999999999998852 1234555544221 11100000111223221 33556677889999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC------CHHHHHHHHHhcCCCeEEEeccCCCCCCCCCCCCCCC
Q 018278 171 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------APSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQ 244 (358)
Q Consensus 171 dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i------~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~~~~ 244 (358)
|||++||+||++|++++++|+++ ||||||+|+|+++ +.+||+++.+..+.. ++||+|..
T Consensus 156 dln~~np~V~~~l~~~~~~wl~~-gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~-~igE~~~~------------- 220 (441)
T 1lwj_A 156 DLNYDNPQVFDEMKRLVLHLLDM-GVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGI-FLAEIWAE------------- 220 (441)
T ss_dssp BBCSSSHHHHHHHHHHHHHHHTT-TCCEEEETTGGGSSSSHHHHHHHHHHHTTTCCSE-EEECCCSC-------------
T ss_pred ccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEeChhhhccCCccHHHHHHHHHHHhHhh-EEEccCCC-------------
Confidence 99999999999999999999995 9999999999999 789999998776655 99999963
Q ss_pred CCchhhHHHHHHhcCCceeeeccchHHHHHHHHc-CchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCC-c
Q 018278 245 DGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-S 322 (358)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~-~ 322 (358)
.+.+..|.. +++.+|+|++...+...+. ++...+...+..... ..+...++|++|||++|+.+.++.+ .
T Consensus 221 ---~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~fl~nHD~~R~~~~~~~~~~ 291 (441)
T 1lwj_A 221 ---ARMVDEHGR---IFGYMLNFDTSHCIKEAVWKENTRVLIESIERAVI---AKDYLPVNFTSNHDMSRLASFEGGFSK 291 (441)
T ss_dssp ---HHHHHHHHH---HHSEEECHHHHHHHHHHHHTTCSHHHHHHHHHHTS---SCSSEEEEESCCTTSCCGGGTTTCCCH
T ss_pred ---HHHHHHHHH---hCCEeEehHHHHHHHHhhccCCHHHHHHHHHHHhc---cCCCceeeeccCCCCCCcccccCCcHH
Confidence 445566665 3678899999888877663 333222222111000 1345678999999999999988755 6
Q ss_pred chHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 323 DKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 323 ~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
++.++|++++|++||+|+||||||+|+.+.
T Consensus 292 ~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~ 321 (441)
T 1lwj_A 292 EKIKLSISILFTLPGVPLVFYGDELGMKGV 321 (441)
T ss_dssp HHHHHHHHHHHTSSSEEEEETTTTTTCCCC
T ss_pred HHHHHHHHHHHhCCCceEEEchHhhCCCCC
Confidence 789999999999999999999999999876
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-61 Score=470.68 Aligned_cols=312 Identities=27% Similarity=0.467 Sum_probs=230.3
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCC---------CCCCCCCCH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYD---------LDASKYGSQ 90 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~---------id~~~~Gt~ 90 (358)
+++||||.|.|+.+.+ +|||+||+++|+|||+||||+|||+||+++. .+|||++.||++ || |+|||+
T Consensus 1 ~~~vi~q~f~w~~~~~-gG~~~gi~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id-~~~Gt~ 78 (483)
T 3bh4_A 1 VNGTLMQYFEWYTPND-GQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVR-TKYGTK 78 (483)
T ss_dssp CCCCEEECCCTTCCSS-SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSS-CSSCCH
T ss_pred CCccEEEEEEeccCCC-CCCHHHHHHHHHHHHhcCCCEEEcCccccCCCCCCCCcccccccccccccccCccC-CCCCCH
Confidence 5789999999998865 7999999999999999999999999999954 589999999995 99 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccc--cCCCC-------C------------cceeeccC-CC--CCCCCCCCCCcc
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTA--ERKDG-------R------------GIYCIFEG-GT--SDDRLDWGPSFI 146 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~--~~~~~-------~------------~~~~~~~~-~~--~~~~~~~~~~~~ 146 (358)
+||++||++||++||+||+|+|+||++. .|++. . ..|..|.- +. ++....|+....
T Consensus 79 ~df~~lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~ 158 (483)
T 3bh4_A 79 SELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHF 158 (483)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCcccCcccccceeeeeeCccccccccccccccccccccccCCCCcccccCccccccC
Confidence 9999999999999999999999999975 22210 0 01111110 11 111111110000
Q ss_pred c-----------------CCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH
Q 018278 147 C-----------------RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (358)
Q Consensus 147 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~ 209 (358)
. +....|.+........+.+..+||||++||+||++|++++++|++++||||||+|+|++++.
T Consensus 159 ~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~ 238 (483)
T 3bh4_A 159 DGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKF 238 (483)
T ss_dssp EEEEEETTTTEEEEEEECSTTCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCH
T ss_pred CCCCcccccCccccccccCCCCCcccccccccCccccccCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEechhcCCH
Confidence 0 00112211100111223455679999999999999999999999889999999999999999
Q ss_pred HHHHHHHHh----cCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhh
Q 018278 210 SITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWR 283 (358)
Q Consensus 210 ~~~~~~~~~----~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~ 283 (358)
+||+++.++ .+| ++++||+|.. ..+.+..|+...+.....|||++...+..++.+ +...
T Consensus 239 ~f~~~~~~~~~~~~~~~~~~igE~~~~---------------~~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~~~~ 303 (483)
T 3bh4_A 239 SFLRDWVQAVRQATGKEMFTVAEYWQN---------------NAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYD 303 (483)
T ss_dssp HHHHHHHHHHHHHHCSCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEecCC---------------ChHHHHHHHhhcCCCceeecHHHHHHHHHHHhcCCccc
Confidence 999998553 345 8999999964 145567888766666778999998888877743 2223
Q ss_pred hhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcc-hHHHHHHHHHcCC-CeeeeecCccccCCCC
Q 018278 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYILTHP-GTPCIVISVTYPLFHP 352 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~-~~~~a~a~l~~~p-G~P~IyyGdE~G~~~~ 352 (358)
+...... ......|...++|++|||+.|..++.+.... +.++|+|++|++| |+|+||||||+|+.++
T Consensus 304 l~~~~~~--~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g~ 372 (483)
T 3bh4_A 304 MRRLLDG--TVVSRHPEKAVTFVENHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGT 372 (483)
T ss_dssp GGGTTTT--CHHHHCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCCCCS
T ss_pred HHHHHhh--hhhhcCCcceeeEcccCCCCccccccccchhHHHHHHHHHHHHCCCCeEEEEehhhcCCCCC
Confidence 3332221 1122346778999999999999887653333 4679999999997 9999999999999875
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-61 Score=470.69 Aligned_cols=312 Identities=28% Similarity=0.475 Sum_probs=229.8
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCC---------CCCCCCCCH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYD---------LDASKYGSQ 90 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~---------id~~~~Gt~ 90 (358)
+++||||+|.|+++.+ +|||+||+++|+|||+||||+|||+||+++. .+|||++.||++ || |+|||+
T Consensus 3 ~~~vi~q~f~w~~~~~-gG~~~gi~~~LdyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id-p~~Gt~ 80 (480)
T 1ud2_A 3 LNGTMMQYYEWHLEND-GQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVR-TKYGTK 80 (480)
T ss_dssp CCCCEEECCCTTCCCS-SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCCH
T ss_pred CCceEEEeeeccCCCC-CCcHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccC-CCCCCH
Confidence 5789999999999876 7999999999999999999999999999944 689999999996 99 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccc--cCCCC-------Cc------------ceee--ccCC-CCCCCC--CCCCC
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTA--ERKDG-------RG------------IYCI--FEGG-TSDDRL--DWGPS 144 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~--~~~~~-------~~------------~~~~--~~~~-~~~~~~--~~~~~ 144 (358)
+||++||++||++||+||+|+|+||++. .|++. .. .|.. |.+. .++... .|...
T Consensus 81 ~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~w~~~~~pg~~~~y~~~~~~~~~~ 160 (480)
T 1ud2_A 81 AQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHF 160 (480)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCccccccccccceeeecCCcccccccccccccccccccccCCCCCCcccCccccccc
Confidence 9999999999999999999999999974 33210 00 1111 1110 011110 11100
Q ss_pred cc--cCC-----------CCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHH
Q 018278 145 FI--CRG-----------DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSI 211 (358)
Q Consensus 145 ~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~ 211 (358)
.. ... ...|.+.......++.+..+||||++||+||++|++++++|++++||||||+|+|++++.+|
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~~W~~~~~~~~g~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~~f 240 (480)
T 1ud2_A 161 NGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY 240 (480)
T ss_dssp EEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred CCCCCcccccccccccccCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHccCCCEEEEcchhhCCHHH
Confidence 00 000 11221110011122345567999999999999999999999988999999999999999999
Q ss_pred HHHHHHh----cCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhh
Q 018278 212 TKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLK 285 (358)
Q Consensus 212 ~~~~~~~----~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~ 285 (358)
|++++++ .+| ++++||+|.. ..+.+..|+...++....|||++...+..++.+ +...+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~igE~~~~---------------~~~~~~~y~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~ 305 (480)
T 1ud2_A 241 TSDWVRHQRNEADQDLFVVGEYWKD---------------DVGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMR 305 (480)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGG
T ss_pred HHHHHHHHHHhcCCCcEEEEeccCC---------------CHHHHHHHHhccCCcceeechHHHHHHHHHHhcCCcccHH
Confidence 9998554 455 8999999964 145567888766656678999998888877642 222333
Q ss_pred hcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcc-hHHHHHHHHHcCC-CeeeeecCccccCCCC
Q 018278 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYILTHP-GTPCIVISVTYPLFHP 352 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~-~~~~a~a~l~~~p-G~P~IyyGdE~G~~~~ 352 (358)
..... ......|.+.++|++|||+.|+.++...... +.++|++++|++| |+|+||||||+|+.++
T Consensus 306 ~~~~~--~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g~ 372 (480)
T 1ud2_A 306 NILRG--SLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPND 372 (480)
T ss_dssp GTTTT--CHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGG
T ss_pred HHHhc--cccccCCCceEEEeccCCCCccccccccchhHHHHHHHHHHHHCCCCceEEecchhhCCCCC
Confidence 32211 1112346678999999999999887653222 4679999999997 9999999999999764
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-62 Score=477.48 Aligned_cols=307 Identities=21% Similarity=0.348 Sum_probs=232.7
Q ss_pred CCCceEEEeeec---CCCCCCCCchHHHHhhhhhH--------HHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCC
Q 018278 21 TSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDL--------SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS 89 (358)
Q Consensus 21 ~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl--------~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt 89 (358)
.++.||||+|.. +++++++|||+||+++|||| |+||||+|||+||++++++|||++.||++|| |+|||
T Consensus 2 ~~~~viYqi~~~~F~~~~~~g~Gdl~gi~~~LdyL~~~~~~~~~~LGv~~I~L~Pi~~~~~~~GYd~~dy~~id-p~~Gt 80 (488)
T 1wza_A 2 EKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKIN-PDYGT 80 (488)
T ss_dssp CCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEEC-GGGCC
T ss_pred CCCcEEEEEEChhhcCCCCCCcCCHHHHHHhhhhhhccccchhhhcCccEEEECCcccCCCCCCcCcccccccC-cccCC
Confidence 467899999852 45566789999999999999 9999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCC----------CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 159 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (358)
++||++||++||++||+||+|+|+||+|.+|++ +..+|+.|.+... .|...... ....|......
T Consensus 81 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~~~----~~~~~~~~-~~~~w~~~~~~ 155 (488)
T 1wza_A 81 LEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDT----DTKETKLD-GGRVWHYSPTG 155 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCC----CCCBCSSS-CBCSEEEETTE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccccCccHhhhhhhcCCCCCCcCeeecCCCCC----CCCCcccc-CCCcccccCCc
Confidence 999999999999999999999999999998751 2345665554221 11110000 11122211113
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH--------HHHHHHHH---hcCCCeEEEec
Q 018278 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------SITKVYME---NTSPDFAVGEK 228 (358)
Q Consensus 160 ~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------~~~~~~~~---~~~p~~~~gE~ 228 (358)
+..+.++..+||||++||+||++|++++++|+++ ||||||+|+|+++.+ +||+++.+ +.+|++++||+
T Consensus 156 ~~~~~f~~~~pdln~~np~Vr~~i~~~~~~Wl~~-gvDGfR~Da~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~vgE~ 234 (488)
T 1wza_A 156 MYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEV 234 (488)
T ss_dssp EEECSSCTTSCBBCTTSHHHHHHHHHHHHHHHHT-TCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEEC
T ss_pred eEEeccCCCCcccccCCHHHHHHHHHHHHHHHHc-CCCChhHhhHhhhccccCcchHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 4456678899999999999999999999999996 999999999999974 79988844 45678899999
Q ss_pred cCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCC-cc---CCCCCcee
Q 018278 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPG-FI---GILPQNAV 303 (358)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~-~~---~~~~~~~v 303 (358)
|.. ...+..|.. .++.++|+|++...+...+ .++...+...+..... .. +..+...+
T Consensus 235 ~~~----------------~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 296 (488)
T 1wza_A 235 WDI----------------SETVAPYFK--YGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDA 296 (488)
T ss_dssp CSC----------------HHHHGGGGT--TTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCB
T ss_pred CCC----------------HHHHHHHHh--cCCCEEECHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccccccceee
Confidence 963 344555554 2477899999988776554 2322222111100000 00 00123347
Q ss_pred ecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 304 TFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 304 ~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
+|++|||++|+.+.++.+.++.++|++++||+||+|+||||||+|+.+.
T Consensus 297 ~fl~nHD~~R~~~~~~~~~~~~~la~~~llt~pG~P~iy~G~E~G~~~~ 345 (488)
T 1wza_A 297 PFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQ 345 (488)
T ss_dssp CBSCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSCCEEETTGGGTCCCC
T ss_pred eeccCCCcchhhhhhcCCHHHHHHHHHHHHhCCCCcEEEechhcCccCC
Confidence 8999999999998887667789999999999999999999999999864
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-61 Score=468.02 Aligned_cols=312 Identities=28% Similarity=0.494 Sum_probs=228.4
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCC--CCCCCCCccccCC---------CCCCCCCC
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS--VAPQGYMPGRLYD---------LDASKYGS 89 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~--~~~~gY~~~d~~~---------id~~~~Gt 89 (358)
.+++||||+|.|+.+.+ +|||+||+++|||||+||||+|||+||+++ +.+|||++.||++ || |+|||
T Consensus 4 ~~~~vi~q~f~w~~~~~-gG~~~gi~~~LdyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~~~~~~q~~~id-p~~Gt 81 (485)
T 1wpc_A 4 GTNGTMMQYFEWYLPND-GNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVR-TKYGT 81 (485)
T ss_dssp -CCCCEEECCCTTCCSS-SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSS-CSSCC
T ss_pred CCCceEEEEEecCCCCC-CCcHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCCeecccccccccccCccC-CCCCC
Confidence 35799999999998864 799999999999999999999999999994 4689999999996 99 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccc--cCCCCC-------------------cceee--ccCC-CCCCCCCCCCCc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTA--ERKDGR-------------------GIYCI--FEGG-TSDDRLDWGPSF 145 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~--~~~~~~-------------------~~~~~--~~~~-~~~~~~~~~~~~ 145 (358)
++||++||++||++||+||+|+|+||++. .|++.. ..|.. |.+. .++....|+...
T Consensus 82 ~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~~ 161 (485)
T 1wpc_A 82 RSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYH 161 (485)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeccccCCCCcCcceeEEeeCccccccccccccccccccccCCCCCCCccccCcccccc
Confidence 99999999999999999999999999974 332100 01111 1110 011111111000
Q ss_pred cc------------------CCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC
Q 018278 146 IC------------------RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 146 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i 207 (358)
.. +....|.+........+.+..++|||++||+||++|++++++|++++||||||+|+|+++
T Consensus 162 ~~~~d~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i 241 (485)
T 1wpc_A 162 FDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHI 241 (485)
T ss_dssp EEEESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGS
T ss_pred CCCCCcccccccccceeeecCCCCCcccccccccCCccccccCccccCCHHHHHHHHHHHHHHHHhCCCCEEEhHhhhcC
Confidence 00 001112110000111233456799999999999999999999998899999999999999
Q ss_pred CHHHHHHHHHh----cCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-ch
Q 018278 208 APSITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-EL 281 (358)
Q Consensus 208 ~~~~~~~~~~~----~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~ 281 (358)
+.+||+++.++ .+| ++++||+|.. ..+.+..|+...++....|||++...+..++.+ ..
T Consensus 242 ~~~f~~~~~~~~~~~~~~~~~~igE~~~~---------------~~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~~ 306 (485)
T 1wpc_A 242 KYSFTRDWINHVRSATGKNMFAVAEFWKN---------------DLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGN 306 (485)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccC---------------ChHHHHHHHhhcCCcceeeCHHHHHHHHHHHccCCc
Confidence 99999998543 445 8999999964 145567788766656678999998888887743 22
Q ss_pred hhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcc-hHHHHHHHHHcCC-CeeeeecCccccCCC
Q 018278 282 WRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYILTHP-GTPCIVISVTYPLFH 351 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~-~~~~a~a~l~~~p-G~P~IyyGdE~G~~~ 351 (358)
..+...... ......|...++|++|||+.|..++.+.... +.++|++++|++| |+|+||||||+|+.+
T Consensus 307 ~~l~~~~~~--~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~~ 376 (485)
T 1wpc_A 307 YDMRNIFNG--TVVQRHPSHAVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPT 376 (485)
T ss_dssp SCGGGTTTT--CHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGG
T ss_pred ccHHHHHhh--hhcccCCCcceEEeccCCCCccccccccchhHHHHHHHHHHHhCCCCeeEEEeccccCcCC
Confidence 233332221 1112246677999999999999887653322 4679999999997 999999999999974
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-62 Score=480.42 Aligned_cols=301 Identities=20% Similarity=0.297 Sum_probs=229.5
Q ss_pred hcCCCCCCceEEEeeecCCCC---C------C-----------------CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC
Q 018278 16 IFLPFTSPALLFQGFNWESSN---K------A-----------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV 69 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~~~~~---~------~-----------------~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~ 69 (358)
..|.|.+++||||+|. +++. + + +|||+||+++|||||+||||+|||+||++++
T Consensus 4 ~~~~W~~~~viYqi~~-~~F~~~gd~~~d~~~~~~~~~w~~~~~~~~~~~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~ 82 (488)
T 2wc7_A 4 QTPDWVKHAVFYQIFP-DRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQNLGINAIYFTPIFQSA 82 (488)
T ss_dssp CCCHHHHTCCEEEECG-GGTCCCSSCCCCSCTTCCGGGGGGCHHHHC-CCCCHHHHHHTHHHHHHHTCCEEEESCCEEEC
T ss_pred CCCCccccceEEEEcc-ccccCCCCccCCcccccccccccCCCccCccCCcCHHHHHHhhHHHHHcCCCEEEECCCCCCC
Confidence 4678999999999997 5441 1 2 7999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC-----------CCcceeeccCCCCCCC
Q 018278 70 APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGGTSDDR 138 (358)
Q Consensus 70 ~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~-----------~~~~~~~~~~~~~~~~ 138 (358)
.+|||++.||++|| |+|||++||++||++||++||+||+|+|+||+|.+|++ +..+|+.+.+...
T Consensus 83 ~~~GYd~~dy~~id-p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~s~y~~~y~~~~~~~--- 158 (488)
T 2wc7_A 83 SNHRYHTHDYYQVD-PMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPL--- 158 (488)
T ss_dssp TTCTTSEEEEEEEC-GGGTHHHHHHHHHHHHHHTTCEEEEEECCSBCCSSSHHHHHHHHHGGGCTTGGGBCBCSSSC---
T ss_pred CCCCCCCcCccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeCCCcCCCcCHHHHHHHhcCCCCCCCCceeecCCCC---
Confidence 99999999999999 99999999999999999999999999999999998752 1223333222000
Q ss_pred CCCCCCcccCCCCccC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHH-HHHHHH
Q 018278 139 LDWGPSFICRGDKEYS-DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS-ITKVYM 216 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~-~~~~~~ 216 (358)
..+. ....++..+.+...+||||++||+||++|++++++|+ ++||||||+|++++++.+ ||+++.
T Consensus 159 ------------~~~~~~~~~~~~~~~~~~~~pdln~~np~vr~~i~~~~~~Wl-~~gvDGfR~D~~~~i~~~~~~~~~~ 225 (488)
T 2wc7_A 159 ------------SPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDGWRLDVPFEIKTPGFWQEFR 225 (488)
T ss_dssp ------------CSSCTTSCCCBCBGGGCTTSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCCCTTHHHHHH
T ss_pred ------------CCCCCCCCCCccccCCCCCcCeeccCCHHHHHHHHHHHHHHH-HCCCCEEEEecccccChHHHHHHHH
Confidence 0000 0012344455678899999999999999999999999 599999999999999998 999884
Q ss_pred ---HhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCch-----------
Q 018278 217 ---ENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL----------- 281 (358)
Q Consensus 217 ---~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~----------- 281 (358)
++.+| ++++||+|.... .|+. ..+++.+++|.+...+...+.+..
T Consensus 226 ~~~~~~~p~~~~vgE~~~~~~-------------------~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (488)
T 2wc7_A 226 DRTKAINPEAYIVGEVWGDSR-------------------QWLD-GTQFDGVMNYLFAGPTIAFAAGDRVVLEQVQSRDY 285 (488)
T ss_dssp HHHHHHCTTCEEEECCCSCCG-------------------GGCS-SSSCSEEEEHHHHHHHHHHHTGGGCCGGGCCTTTC
T ss_pred HHHHhhCCCeEEEEEecCCcH-------------------Hhhc-CCCcCceeCchHHHHHHHHHhcCcccccccccccc
Confidence 45567 899999996421 1222 234667788888777766654321
Q ss_pred --------hhhhhcCCC-CCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 282 --------WRLKDSNGK-PPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 282 --------~~~~~~~~~-~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
..+...+.. ........+...++|++|||++|+.+.++.+.++.++|++++||+||+|+||||||+|+.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 365 (488)
T 2wc7_A 286 QPYPPLFAAEYATKIQEVLQLYPWEIQLTQLNLLASHDTARLMTIAGGDIASVELSTLLLLTFPGAPSIYYGDEVGLPGG 365 (488)
T ss_dssp CCCSCCCHHHHHHHHHHHHTSSCHHHHTTCEECSCCTTSCCHHHHTTTCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCC
T ss_pred ccccCCCHHHHHHHHHHHHHhccchhhcceeEeccccchhhHHHhcCCcHHHHHHHHHHHHhCCCCcEEEEeeccCcCCC
Confidence 111110000 00000001235689999999999999887666789999999999999999999999999865
Q ss_pred CC
Q 018278 353 LN 354 (358)
Q Consensus 353 ~n 354 (358)
.+
T Consensus 366 ~d 367 (488)
T 2wc7_A 366 ID 367 (488)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-61 Score=471.00 Aligned_cols=312 Identities=27% Similarity=0.448 Sum_probs=230.5
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCC---------CCCCCCCC
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYD---------LDASKYGS 89 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~---------id~~~~Gt 89 (358)
.+++||||+|.|+.+.+ +|+|+||+++|+|||+||||+|||+||+++. .+|||++.||++ || |+|||
T Consensus 3 ~~~~v~~q~F~W~~~~~-gG~~~gi~~~LdyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~l~~f~~~~~id-p~~Gt 80 (515)
T 1hvx_A 3 PFNGTMMQYFEWYLPDD-GTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVR-TKYGT 80 (515)
T ss_dssp CCCCCEEECCCTTCCSS-SCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCC
T ss_pred CCCceEEEEEEccCCCC-CCcHHHHHHHHHHHHhcCCCEEEeCCcccCCCCCCCCcCeecccccccccccCccC-CCCCC
Confidence 57899999999999876 7999999999999999999999999999954 589999999997 99 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccc--cCCCC-------C------------cceee--ccCC-CCCCCCCCCCCc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTA--ERKDG-------R------------GIYCI--FEGG-TSDDRLDWGPSF 145 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~--~~~~~-------~------------~~~~~--~~~~-~~~~~~~~~~~~ 145 (358)
++||++||++||++||+||+|+|+||++. .|++. . ..|.. |.+. .++....|+...
T Consensus 81 ~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~pg~~~~y~~~~~~~~~ 160 (515)
T 1hvx_A 81 KAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYH 160 (515)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCCccCCCcccceeEEEecCcccccccccccccccccccccCCCCCccccCcccccc
Confidence 99999999999999999999999999974 22210 0 01111 1110 011111111000
Q ss_pred cc-----------------CCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC
Q 018278 146 IC-----------------RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 146 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 208 (358)
.. +....|.+........+.+..++|||++||+||++|++++++|++++||||||+|+|++++
T Consensus 161 ~~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfRlDaa~~i~ 240 (515)
T 1hvx_A 161 FDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK 240 (515)
T ss_dssp EEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC
T ss_pred cCCCCccccccccccccccCCCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEehhhhcC
Confidence 00 0011221110011122334567999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHh----cCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chh
Q 018278 209 PSITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELW 282 (358)
Q Consensus 209 ~~~~~~~~~~----~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~ 282 (358)
.+||+++.++ .+| ++++||+|.. ..+.+..|+...++....|||++...+..++.+ +..
T Consensus 241 ~~f~~~~~~~v~~~~~~~~~~igE~~~~---------------~~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~~~ 305 (515)
T 1hvx_A 241 FSFFPDWLSYVRSQTGKPLFTVGEYWSY---------------DINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTF 305 (515)
T ss_dssp TTHHHHHHHHHHHHHCCCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEEecCC---------------ChHHHHHHHhccCCcceeecHHHHHHHHHHHhcCCch
Confidence 9999998553 456 8999999964 145667888866666788999998888887743 222
Q ss_pred hhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCC-cchHHHHHHHHHcCC-CeeeeecCccccCCC
Q 018278 283 RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-SDKVMLGYAYILTHP-GTPCIVISVTYPLFH 351 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~-~~~~~~a~a~l~~~p-G~P~IyyGdE~G~~~ 351 (358)
.+...... ......|.+.++|++|||+.|..++.... ..+.++|++++|++| |+|+||||||+|+.+
T Consensus 306 ~l~~~~~~--~~~~~~~~~~~~fl~nHD~~r~~s~~~~~~~~~~~la~a~~l~~~~G~P~iyyG~E~G~~~ 374 (515)
T 1hvx_A 306 DMRTLMTN--TLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQ 374 (515)
T ss_dssp CGGGTTTT--CHHHHCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGG
T ss_pred hHHHHHHh--hHhhcCCccceEEeccccCCcchhcccchhhHHHHHHHHHHHhCCCCceEEEeccccCCCC
Confidence 33332221 11123466789999999999998876532 234689999999997 999999999999874
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-61 Score=470.77 Aligned_cols=297 Identities=19% Similarity=0.301 Sum_probs=228.2
Q ss_pred CCCCCceEEEeeecCCC---CC------C----------------CCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCC
Q 018278 19 PFTSPALLFQGFNWESS---NK------A----------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQG 73 (358)
Q Consensus 19 ~~~~~~v~~q~F~~~~~---~~------~----------------~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~g 73 (358)
.|.+++||||+|. +++ ++ + +|||+||+++|+|||+||||+|||+||++++++||
T Consensus 2 ~W~~~~viYqi~~-~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~g 80 (475)
T 2z1k_A 2 AWYEGAFFYQIFP-DRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHR 80 (475)
T ss_dssp CTTSSCCEEEECG-GGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEEESSTTC
T ss_pred CcccCceEEEEcc-CeecCCCCcccCCCccccccccCCCCccccCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCC
Confidence 6999999999997 443 22 3 79999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC-----------CCcceeeccCCCCCCCCCCC
Q 018278 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGGTSDDRLDWG 142 (358)
Q Consensus 74 Y~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 142 (358)
|++.||++|| |+|||++||++||++||++||+||+|+|+||++.+|++ +..+|+.+.+.
T Consensus 81 Y~~~dy~~id-p~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~--------- 150 (475)
T 2z1k_A 81 YHTVDYFQVD-PILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGF--------- 150 (475)
T ss_dssp CSEEEEEEEC-GGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBCSS---------
T ss_pred cCCCCcCccC-cccCCHHHHHHHHHHHHHCCCEEEEEEecccccCCCHHHHHHHhcCCCCCCcceeecCCC---------
Confidence 9999999999 99999999999999999999999999999999988752 11222222210
Q ss_pred CCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHH-HHHHHH---Hh
Q 018278 143 PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS-ITKVYM---EN 218 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~-~~~~~~---~~ 218 (358)
.. ..+ .+..++..+.+...+||||++||+||++|++++++|+ ++||||||+|++++++.+ ||+++. ++
T Consensus 151 -----~~-~~~-~~~~~y~~~~~~~~~pdln~~np~v~~~i~~~~~~w~-~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~ 222 (475)
T 2z1k_A 151 -----PL-KAY-TAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLDVPNEIPDPTFWREFRQRVKG 222 (475)
T ss_dssp -----SC-CTT-SSSCSBCBGGGCTTSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCCCHHHHHHHHHHHHH
T ss_pred -----CC-cCC-CCCCCccccCCCCCcCccccCCHHHHHHHHHHHHHHH-HCCCCEEeecccccCCHHHHHHHHHHHHhh
Confidence 00 000 0123444555678899999999999999999999999 599999999999999998 999884 44
Q ss_pred cCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc-----------------
Q 018278 219 TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE----------------- 280 (358)
Q Consensus 219 ~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~----------------- 280 (358)
.+| ++++||+|.... .|+. ..+++.+++|.+...+...+.+.
T Consensus 223 ~~p~~~~igE~~~~~~-------------------~~~~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (475)
T 2z1k_A 223 ANPEAYIVGEIWEEAD-------------------FWLQ-GDMFDAVMNYPLARAVLGFVGGEALDRDLAAQTGLGRIEP 282 (475)
T ss_dssp HCTTCEEEECCSSCCS-------------------GGGS-SSSCSEEBCHHHHHHHHHHHHGGGSCHHHHTTSTTCSCCC
T ss_pred cCCCcEEEEEecCCcc-------------------cccc-CCCcCeeeChhHHHHHHHHHhCCccccccccccccccccC
Confidence 567 899999996421 1221 23466778888877777665332
Q ss_pred --hhhhhhcCCC-CCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 281 --LWRLKDSNGK-PPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 281 --~~~~~~~~~~-~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
...+...+.. ........+...++|++|||++|+.+.++.+.++.++|++++|++||+|+||||||+|+.+..+
T Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~E~g~~~~~d 359 (475)
T 2z1k_A 283 LQALAFSHRLEDLFGRYRPEVVRAQMNLLTSHDTPRLLSLMRGSVERARLALALLFLLPGNPTVYYGEEVGMAGGKD 359 (475)
T ss_dssp CCHHHHHHHHHHHTTSSCHHHHTTCEECSCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCCST
T ss_pred CCHHHHHHHHHHHHHhccchhhhhheeeccCCchhhHHHhcCCcHHHHHHHHHHHHhCCCCCEEEeecccCcCCCCC
Confidence 1122111000 0001001124568999999999999888766778999999999999999999999999986544
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=491.11 Aligned_cols=313 Identities=17% Similarity=0.199 Sum_probs=234.9
Q ss_pred hhcCCCCCCceEEEeeecCCCCC---------------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCC
Q 018278 15 AIFLPFTSPALLFQGFNWESSNK---------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQG 73 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~~~~~~---------------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~g 73 (358)
...|+|.++.||||+|. +++.+ ++|||+||+++|||||+||||+|||+||++++++||
T Consensus 217 ~~~p~W~~~~viYqI~p-~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~~~G 295 (696)
T 4aee_A 217 VDKPRWYMGTVYYQIFI-DSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHIDHLEDLGVETIYLTPIFSSTSYHR 295 (696)
T ss_dssp CSSCCTTSSCCEEEECG-GGTCCCCGGGCCSSCCCCCSSCCSSCCCCCHHHHHTTHHHHHHHTCCEEEECCCEEESSSSC
T ss_pred CCCcchhhcCeEEEEeh-HHhcCCCCCCCccccccccCCcccccCCcCHHHHHHHhHHHHHcCCCEEEECCcccCCCCCC
Confidence 56799999999999996 43321 589999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCC-----------CCCcceeeccCCCCC------
Q 018278 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK-----------DGRGIYCIFEGGTSD------ 136 (358)
Q Consensus 74 Y~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~-----------~~~~~~~~~~~~~~~------ 136 (358)
|++.||++|| |+|||++||++||++||++||+||+|+|+||+|.+|+ .+..+|+.+.+....
T Consensus 296 Yd~~Dy~~id-p~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~f~~~~~~~~~s~y~dwy~~~~~~~~~~~~~~ 374 (696)
T 4aee_A 296 YDTIDYKSID-KYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELM 374 (696)
T ss_dssp CSEEEEEEEC-GGGCCHHHHHHHHHHHHHTTCEEEEEECSSEECTTSHHHHHHHHHCTTSTTGGGBCBCSCCCHHHHHHH
T ss_pred cCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEeccccccCccCHHHHHHHhcCCCCCCCCceEecCCCCccccccc
Confidence 9999999999 9999999999999999999999999999999999875 123344444331110
Q ss_pred ----CCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHH
Q 018278 137 ----DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212 (358)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~ 212 (358)
....|...... ....+.....++..+.+...+||||++||+||++|++++++|+ ++||||||+|+|++++.+||
T Consensus 375 ~~~~~~~~~~s~~~~-~~~~~~~~~~~y~~~~~~~~~pdLN~~np~Vr~~i~~~~~~Wl-~~GvDGfRlDaa~~i~~~f~ 452 (696)
T 4aee_A 375 LKYIDGEECRSRELY-KLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWI-DKGIDGFRIDVAMGIHYSWM 452 (696)
T ss_dssp HHHHSSSSCCGGGGG-GSHHHHHSCCSBCBGGGCTTCEEBCTTCHHHHHHHHHHHHHHH-TTTCCEEEETTGGGSCHHHH
T ss_pred ccccCCCcccccccc-ccccccCCCCceeeecCCCCchhhcCCCHHHHHHHHHHHHHHH-hCCCCEEEEechhhCCHHHH
Confidence 01111100000 0001111234566667889999999999999999999999999 59999999999999999999
Q ss_pred HHHH---HhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhhhh
Q 018278 213 KVYM---ENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLK 285 (358)
Q Consensus 213 ~~~~---~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~~~ 285 (358)
+++. ++.+| ++++||+ ... .|+. ..+++.+++|++...+...+.. +...+.
T Consensus 453 ~~~~~~v~~~~p~~~~igE~-~~~--------------------~~l~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~ 510 (696)
T 4aee_A 453 KQYYEYIKNTYPDFLVLGEL-AEN--------------------PRIY-MDYFDSAMNYYLRKAILELLIYKRIDLNEFI 510 (696)
T ss_dssp HHHHHHHHHHCTTCEEEECC-CSC--------------------GGGT-TTTCSEEBCHHHHHHHHHHHTSCCSCHHHHH
T ss_pred HHHHHHHHhhCCCcEEEecc-cch--------------------hhhc-CCccceEECcHHHHHHHHHHhcCCCCHHHHH
Confidence 9984 44567 8899998 321 1222 2456788999998888777632 222222
Q ss_pred hcCCCC-CCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 286 DSNGKP-PGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 286 ~~~~~~-~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
..+... ...........++|++|||++|+.+.++.+. +.++|++++||+||+|+||||||+|+.+..+
T Consensus 511 ~~l~~~~~~~~~~~~~~~~nfl~nHD~~R~~s~~~~~~-~~kla~a~llt~pG~P~IYyGdE~G~~~~~d 579 (696)
T 4aee_A 511 SRINNVYAYIPHYKALSLYNMLGSHDVPRIKSMVQNNK-LLKLMYVLIFALPGSPVIYYGDEIGLEGGRD 579 (696)
T ss_dssp HHHHHHHTTSCHHHHHHCEECSCCTTSCCHHHHHCCHH-HHHHHHHHHHHSSSEEEEETTGGGTCCCCST
T ss_pred HHHHHHHHhcchhhhhheeEecCCCCCCeehhhcCCcH-HHHHHHHHHHhCCCceEEEecccccccCCCC
Confidence 111100 0000001123589999999999998876444 8999999999999999999999999976543
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=477.07 Aligned_cols=312 Identities=19% Similarity=0.256 Sum_probs=232.7
Q ss_pred cCCCCCCceEEEeeec---CCCCC-------------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC----C
Q 018278 17 FLPFTSPALLFQGFNW---ESSNK-------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----A 70 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~---~~~~~-------------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~----~ 70 (358)
...|.+.+||||+|.- +.+++ .||||+||+++|||||+||||+|||+||++++ +
T Consensus 100 ~~~~~~~~viY~i~~drF~~gd~~nd~~~~~~~~~~~~~~~~~~gGdl~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~~ 179 (601)
T 3edf_A 100 RQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYS 179 (601)
T ss_dssp CCCCCTTCCEEEECHHHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCHHHHHHTHHHHHHTTCCEEEESCCEECCCSSSG
T ss_pred cCCCCccCeEEEEehHHhcCCCCCcCcCcCcccccCccccccccCcCHHHHHHHHHHHHHcCCCEEEECccccCCCCCCC
Confidence 4568888999999841 11111 58999999999999999999999999999976 4
Q ss_pred CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC----CCcceeeccCCCCCCCCCCCCCcc
Q 018278 71 PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEGGTSDDRLDWGPSFI 146 (358)
Q Consensus 71 ~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
+|||++.||++|| |+|||.+||++||++||++||+||+|+|+||+|.+|++ +..+|+.+.++ .....|.....
T Consensus 180 ~~GY~~~dy~~id-p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~p~~dw~~~~~~--~~~~~~~~~~~ 256 (601)
T 3edf_A 180 YHGYAATDHYRID-PRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGK--FVPTQHHRVAV 256 (601)
T ss_dssp GGCCSCSEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCSSTTSBGGGGS--CCBCCCCGGGG
T ss_pred CCCcCcccccccc-ccCCCHHHHHHHHHHHHHcCCEEEEEECCcccCCcchhhhhCCccCceeeCCC--CCCCccccccc
Confidence 6999999999999 99999999999999999999999999999999999862 22244433221 11111210000
Q ss_pred cCCCCccCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC
Q 018278 147 CRGDKEYSDG--QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP 221 (358)
Q Consensus 147 ~~~~~~~~~~--~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p 221 (358)
. ..+... ...+..+++...+||||++||+||++|++++++|++++||||||+|++++++.+||+++. ++.+|
T Consensus 257 ~---d~~~~~~~~~~~~~~wf~~~lpdLN~~np~V~~~l~~~~~~Wi~~~GVDGfRlD~~~~~~~~f~~~~~~~v~~~~p 333 (601)
T 3edf_A 257 Q---DPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEYP 333 (601)
T ss_dssp G---CTTCCHHHHHHHHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEESSGGGSCHHHHHHHHHHHHHHCT
T ss_pred c---CCCCccccccccccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCEEEeeccccCCHHHHHHHHHHHHHhCC
Confidence 0 000000 000112345678999999999999999999999997799999999999999999999984 44566
Q ss_pred -CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh-------cCCceeeeccchHHHHHHHHcCc-----hhhhhhcC
Q 018278 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-------AGGAVAAFDFTTKGILQAAVQGE-----LWRLKDSN 288 (358)
Q Consensus 222 -~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~df~~~~~l~~~~~~~-----~~~~~~~~ 288 (358)
++++||+|... ...+..|... ..++.+++||++...+..++.+. +..+...+
T Consensus 334 ~~~~vgE~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~v~nf~~~~~l~~~~~~~~~~~~~~~l~~~~ 398 (601)
T 3edf_A 334 RLNMVGQEWSTR---------------VPVVARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETL 398 (601)
T ss_dssp TCEEEECCCCSC---------------HHHHHTTSTTCCCTTCCCCCCCEEBCHHHHHHHHHHHHCTTSSSTTHHHHHHH
T ss_pred CeEEEeeecCCc---------------hHHHhhhhccccccccccccCCeEEChHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 88999999752 1222222221 23467889999999888887543 22222221
Q ss_pred CCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCC
Q 018278 289 GKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFH 351 (358)
Q Consensus 289 ~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~ 351 (358)
.. ......+...++|++|||++|+.+.++.+.++.++|++++||+||+|+||||||+|+.+
T Consensus 399 ~~--~~~~~~~~~~~~fl~NHD~~R~~s~~~~~~~~~k~a~alllt~pG~P~IYyG~E~G~~~ 459 (601)
T 3edf_A 399 SL--DYLYPEPQNLVLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTMPRIPQFYSGDEILMTS 459 (601)
T ss_dssp GG--GGGSSCGGGSEEESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCC
T ss_pred hh--hcccCCccceEEeeccCCCCCchhhcCCCHHHHHHHHHHHHhcCCCcEEEeehcccccC
Confidence 11 11122356779999999999998877667778999999999999999999999999987
|
| >4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=488.10 Aligned_cols=309 Identities=18% Similarity=0.229 Sum_probs=224.4
Q ss_pred hcCCCCCCceEEEeeec---CCCC----------CCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCC
Q 018278 16 IFLPFTSPALLFQGFNW---ESSN----------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL 82 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~---~~~~----------~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~i 82 (358)
..|+|++++||||+|.- ++++ ..||||+||++||||||+||||+||||||++++++|||++.||++|
T Consensus 199 ~~P~W~~~aViYqI~p~~F~~~~~~~g~~~~~~~~~gGdl~Gi~~kLdYLk~LGvt~I~L~Pif~s~~~~GYd~~dy~~i 278 (645)
T 4aef_A 199 EFPTWVIDRVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHV 278 (645)
T ss_dssp CCCGGGGGCCEEEECHHHHCCCSSCC---------CCCCHHHHHHTHHHHHHHTCCEEEECCCEEESSTTCSSEEEEEEE
T ss_pred CCChhHcCCEEEEEecchhcCCCCCCcccCCcCcCCCcCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCcCccCCCcc
Confidence 46899999999999851 2222 1369999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC-----------CCcceeeccCCCCCCCCCCCCCcccCCCC
Q 018278 83 DASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGGTSDDRLDWGPSFICRGDK 151 (358)
Q Consensus 83 d~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (358)
| |+|||++||++||++||++||+||||+|+||+|.+|++ +..+|+.+.+........+. ......
T Consensus 279 d-p~~Gt~~df~~LV~~aH~~GI~VIlD~V~NHts~~h~wf~~~~~~~~~s~~~d~y~~~~~~~~~~~~~~---~~~~~~ 354 (645)
T 4aef_A 279 A-RRLGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYRIIKFPVVSKEFLQ---ILHSKS 354 (645)
T ss_dssp C-GGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHSTTCTTGGGBCBSSSSCSCTTHHH---HHHHSC
T ss_pred C-cccCCHHHHHHHHHHhhhcCCEEEEEecccccccCCchhhhHhhcCCCCCcccccEeccCCCccccccc---ccCCCc
Confidence 9 99999999999999999999999999999999998852 12223322221111000000 000001
Q ss_pred ccCC-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCC-Ce
Q 018278 152 EYSD-------GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP-DF 223 (358)
Q Consensus 152 ~~~~-------~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p-~~ 223 (358)
.|.. ....+........|||||++||+||+++++++++|++ +||||||+|+|++++++||+++.++.++ .+
T Consensus 355 ~w~~~~~~~~~~~~~y~~~~~~~~~pdLn~~np~V~~~~~~~~~~Wl~-~gvDGfR~D~a~~i~~~f~~~~~~~~~~~~~ 433 (645)
T 4aef_A 355 SWEEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKVREFIKNVILFWTN-KGVDGFRMDVAHGVPPEVWKEVREALPKEKY 433 (645)
T ss_dssp GGGTTHHHHHHHCCSBCEETTEEEEEBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHSCTTCE
T ss_pred ccccccccccccccccccccccccCccccccCHHHHHHHHHHHHHHHh-cCCCEEEeccccccchhHHHHHHhhhhcccc
Confidence 1110 0112222333456899999999999999999999998 7999999999999999999999888777 78
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc---hhhhhhcCCCCCCccCCCCC
Q 018278 224 AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGFIGILPQ 300 (358)
Q Consensus 224 ~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 300 (358)
++||+|.... .+. .......+++.+...+...+..+ ...+.+............+.
T Consensus 434 ~~gE~~~~~~-------------------~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (645)
T 4aef_A 434 LIGEVMDDAR-------------------LWL--FDKFHGVMNYRLYDAILRFFGYEEITAEEFLNELELLSSYYGPAEY 492 (645)
T ss_dssp EEECCCSCCG-------------------GGT--TTTCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHGGGGG
T ss_pred ccccccccch-------------------hhh--ccccceecchhHHHHHHHhhhccccchHHHHHHHHHHhhhcccccc
Confidence 9999996521 011 12345567777766666554221 11111110000000111223
Q ss_pred ceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCC
Q 018278 301 NAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFH 351 (358)
Q Consensus 301 ~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~ 351 (358)
..++|++|||++|+.+..+ +.++.++|++++||+||+|+||||||+|+.+
T Consensus 493 ~~~~fl~nHD~~R~~s~~g-d~~~~~~a~a~llt~pG~P~iyyGdE~G~~~ 542 (645)
T 4aef_A 493 LMYNFLDNHDVERFLDIVG-DKRKYVCALVFLMTYKGIPSLFYGDEIGLRG 542 (645)
T ss_dssp GCBCCSCCTTSCCHHHHHC-CHHHHHHHHHHHHHSSSBCEEETTGGGTCCC
T ss_pred ccccccCCCCCcccccccC-CHHHHHHHHHHHHHcCCCcEEECChhhCCCC
Confidence 4578999999999988876 6678899999999999999999999999875
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-60 Score=474.37 Aligned_cols=301 Identities=20% Similarity=0.314 Sum_probs=230.6
Q ss_pred hcCCCCCCceEEEeeecC---CC-----------CC--------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCC
Q 018278 16 IFLPFTSPALLFQGFNWE---SS-----------NK--------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQG 73 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~~---~~-----------~~--------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~g 73 (358)
..|.|.++.||||+|..+ ++ ++ .+|||+||+++|+|||+||||+||||||++++.+||
T Consensus 127 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~G 206 (588)
T 1j0h_A 127 EAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHK 206 (588)
T ss_dssp CCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSSC
T ss_pred CCCccccccEEEEEcchhhcCCCCCcCcccccccCCCCCcccccCCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCC
Confidence 467899999999998411 11 11 379999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC-----------CCcceeeccCCCCCCCCCCC
Q 018278 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGGTSDDRLDWG 142 (358)
Q Consensus 74 Y~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 142 (358)
|++.|||+|| |+|||++||++||++||++||+||||+|+||++.+|+. +..+|+.+.+..
T Consensus 207 Yd~~dy~~id-p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~dwy~~~~~~-------- 277 (588)
T 1j0h_A 207 YDTADYFEVD-PHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFP-------- 277 (588)
T ss_dssp CSCSEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSS--------
T ss_pred cCccccCccC-ccCCCHHHHHHHHHHHHHCCCEEEEEECcCcCcccchhHHHHHhcCCCCCcccccccccCC--------
Confidence 9999999999 99999999999999999999999999999999987641 222333332210
Q ss_pred CCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHH---HHhc
Q 018278 143 PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENT 219 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~---~~~~ 219 (358)
.+.+..+++....+...+||||++||+||++|++++++|++++||||||+|+|++++.+||+++ +++.
T Consensus 278 ---------~~~~~~~~y~~~~~~~~~pdLn~~np~Vr~~l~~~~~~Wl~~~giDGfR~D~a~~~~~~f~~~~~~~v~~~ 348 (588)
T 1j0h_A 278 ---------LQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKAL 348 (588)
T ss_dssp ---------CCCSSSCSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHH
T ss_pred ---------CCCCCCCCeEEecCCCCccccccCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHh
Confidence 0001122444555678899999999999999999999999889999999999999999999998 4556
Q ss_pred CC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhhhhhcCCCC-CCc
Q 018278 220 SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKP-PGF 294 (358)
Q Consensus 220 ~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~~~~~~~~~-~~~ 294 (358)
+| ++++||.|.... .|+. ..+++.+++|+++..+...+.. +...+...+... ...
T Consensus 349 ~p~~~~igE~~~~~~-------------------~~~~-g~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~y 408 (588)
T 1j0h_A 349 KPDVYILGEIWHDAM-------------------PWLR-GDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSY 408 (588)
T ss_dssp CTTCEEEECCSSCCG-------------------GGCS-SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEEecCchh-------------------hhhc-CCCcCEEEChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 77 899999996521 1222 2346678888888777766532 112222111000 000
Q ss_pred cCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 295 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 295 ~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
....+...++|++|||++|+.+..+.+.++.++|++++|++||+|+||||||+|+.+..+
T Consensus 409 ~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~~~~~~pG~P~iy~G~E~g~~~~~d 468 (588)
T 1j0h_A 409 PNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGND 468 (588)
T ss_dssp CHHHHHTCBCBSCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSCCEEETTGGGTCCCCST
T ss_pred ccchhhhheeecCCCCCchhhhhcCCcHHHHHHHHHHHHhCCCCcEEEeecccCccCCCC
Confidence 000112347899999999999888766778999999999999999999999999987654
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-60 Score=470.16 Aligned_cols=312 Identities=20% Similarity=0.269 Sum_probs=235.0
Q ss_pred cCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHH
Q 018278 17 FLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d 92 (358)
.|.|+++.||||+|.. +++++++|||+||+++|+|||+||||+|||+||++++. +|||++.||++|| |+|||++|
T Consensus 2 ~~~W~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~Ldyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~id-p~~Gt~~d 80 (543)
T 2zic_A 2 QKHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIA-DIFGNMAD 80 (543)
T ss_dssp CCCGGGGCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCHHH
T ss_pred CccchhhCeEEEEEcHHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccC-cccCCHHH
Confidence 4889999999999852 34456789999999999999999999999999999986 6999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccccCCC----------CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCC
Q 018278 93 LKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDT 162 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (358)
|++||++||++||+||+|+|+||+|.+|++ +..+|+.|.+. +.+|...+. ...+.+....++++.
T Consensus 81 f~~lv~~~h~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~----p~~~~~~f~-~~~w~~~~~~~~~y~ 155 (543)
T 2zic_A 81 MDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCDQ----PNDLESIFG-GSAWQYDDKSDQYYL 155 (543)
T ss_dssp HHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHCTTSGGGGGBCEESS----CCSCBCTTS-SBSEEEETTTTEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEecCcccccchhhHhhhcCCCCCCcceeecCCC----CCcccccCC-CCCCcccCCCCcEEE
Confidence 999999999999999999999999998752 23356666541 233432221 122233344455666
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH--------------HHHHHHHHhc--CC-CeEE
Q 018278 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------------SITKVYMENT--SP-DFAV 225 (358)
Q Consensus 163 ~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------------~~~~~~~~~~--~p-~~~~ 225 (358)
..+...+||||++||+||++|++++++|++ +||||||+|+|++++. ++|+++.++. +| ++++
T Consensus 156 ~~f~~~~pdLN~~np~Vr~~i~~~~~~Wl~-~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v 234 (543)
T 2zic_A 156 HFFSKKQPDLNWENANLRQKIYDMMNFWID-KGIGGFRMDVIDMIGKIPAQHIVSNGPKLHAYLKEMNAASFGQHDLLTV 234 (543)
T ss_dssp CSSCTTSCBBCTTCHHHHHHHHHHHHHHHT-TTCCEEEETTGGGTTCBGGGTBCSSCTTHHHHHHHHHHHTGGGSCCEEE
T ss_pred CcccCCCCccCcCCHHHHHHHHHHHHHHHh-cCCCEEEECCccceeecCCCccccccHHHHHHHHHHHHHHhccCCeEEE
Confidence 778889999999999999999999999998 9999999999999985 7888885432 34 8999
Q ss_pred EeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-CCceeeeccchHHHHHHHH-cC---------chhhhhhcCCCCCCc
Q 018278 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQAAV-QG---------ELWRLKDSNGKPPGF 294 (358)
Q Consensus 226 gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~l~~~~-~~---------~~~~~~~~~~~~~~~ 294 (358)
||+|.. ..+.+..|+... .++..+|+|.+.. + ... .+ +...+...+......
T Consensus 235 gE~~~~---------------~~~~~~~y~~~~~~~~~~~~~f~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 297 (543)
T 2zic_A 235 GETWGA---------------TPEIAKQYSNPVNHELSMVFQFEHIG-L-QHKPEAPKWDYVKELNVPALKTIFNKWQTE 297 (543)
T ss_dssp EECTTC---------------CHHHHHHHHCGGGCSCSEEECCTTGG-G-GBCTTSCTTSBCSSCCHHHHHHHHHHHHHH
T ss_pred eeecCC---------------CHHHHHHHhCCCCCccceEecchhhc-c-ccccccccccccCCCCHHHHHHHHHHHHHh
Confidence 999853 145667787653 4577888887642 1 000 00 111221111000000
Q ss_pred cCCCCCceeecccCCCCCcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 295 IGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 295 ~~~~~~~~v~f~~nHD~~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
....+...++|++|||++|+.+.++... ++.++|++++||+||+|+||||||+|+.+.
T Consensus 298 ~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~~~k~a~~~llt~pG~P~iy~G~E~G~~~~ 359 (543)
T 2zic_A 298 LELGQGWNSLFWNNHDLPRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNY 359 (543)
T ss_dssp SCTTTCCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCC
T ss_pred cccCCCeeeeeecCCCCccchhhcCCchhhhHHHHHHHHHHHHhCCCceEEEeccccCCCCC
Confidence 0001234578999999999988776433 268899999999999999999999999874
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-60 Score=468.80 Aligned_cols=319 Identities=17% Similarity=0.234 Sum_probs=237.0
Q ss_pred hhcCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCH
Q 018278 15 AIFLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~ 90 (358)
...|.|.++.||||+|.. +++++++|||+||+++|+|||+||||+|||+||++++. +|||+|.||++|+ |+|||+
T Consensus 14 ~~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id-p~~Gt~ 92 (570)
T 1m53_A 14 SEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIM-KEYGTM 92 (570)
T ss_dssp -CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCH
T ss_pred ccCchhHhhCcEEEEechhhccCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccC-cccCCH
Confidence 457889999999999863 34456789999999999999999999999999999986 6999999999999 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccCC----------CCCcceeeccCCCC-CCCCCCCCCcccCCCCccCCCCCC
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERK----------DGRGIYCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGN 159 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 159 (358)
+||++||++||++||+||+|+|+||+|.+|+ .+..+|+.|.+... ..+.+|...+. ...+.+....++
T Consensus 93 ~df~~lv~~aH~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~-~~~w~~~~~~~~ 171 (570)
T 1m53_A 93 EDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFG-GSAWQKDAKSGQ 171 (570)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTS-SBSEEECTTTCC
T ss_pred HHHHHHHHHHHHCCCEEEEEEeccccccccHHHHHhhcCCCCCCccceeecCCCCCCCCccccccCC-CccccccCCCCc
Confidence 9999999999999999999999999999874 23446777765321 12345543332 222334445566
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH--------------------------HHHH
Q 018278 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------------------------SITK 213 (358)
Q Consensus 160 ~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------------------------~~~~ 213 (358)
++...+...+||||++||+||++|++++++|++ +||||||+|+|+++.. +||+
T Consensus 172 ~y~~~f~~~~pdLN~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 250 (570)
T 1m53_A 172 YYLHYFARQQPDLNWDNPKVREDLYAMLRFWLD-KGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQ 250 (570)
T ss_dssp EEECSSCTTCCBBCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHH
T ss_pred EEECcccCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccccccccCCCcccccccccccCchHHHHHHH
Confidence 777778899999999999999999999999997 9999999999998864 4677
Q ss_pred HHHH---hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-CCceeeeccchHHHHH---HHHc-C--chhh
Q 018278 214 VYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQ---AAVQ-G--ELWR 283 (358)
Q Consensus 214 ~~~~---~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~l~---~~~~-~--~~~~ 283 (358)
++.+ +..+++++||+|... .+.+..|+... .+++.+|+|.+..... ..+. + +...
T Consensus 251 ~~~~~v~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 315 (570)
T 1m53_A 251 EMNRKVLSRYDVATAGEIFGVP---------------LDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQ 315 (570)
T ss_dssp HHHHHTGGGSCCEEEEECTTCC---------------GGGTHHHHCGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHH
T ss_pred HHHHHHhccCCeEEEecccCCC---------------HHHHHHHhcccCcccceeechhhhhcccccccccccCCCCHHH
Confidence 7644 233589999999531 34566777542 4577788887642100 0000 0 1111
Q ss_pred hhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCc-----chHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS-----DKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~-----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
+...+....... ..+...++|++|||++|+.+.++... ++.++|++++||+||+|+||||||+|+.+.
T Consensus 316 l~~~l~~~~~~~-~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~ 388 (570)
T 1m53_A 316 FRQIISKMDVTV-GKYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNY 388 (570)
T ss_dssp HHHHHHHHHHHH-TTTCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTTTCCCC
T ss_pred HHHHHHHHHHhc-ccCCcccccCCCCCchhhHHhhCCCchhHHHHHHHHHHHHHHhCCCCeEEEechhcCCCCC
Confidence 211110000000 01234578999999999888765432 258999999999999999999999999885
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-59 Score=466.32 Aligned_cols=318 Identities=19% Similarity=0.262 Sum_probs=235.1
Q ss_pred hcCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHH
Q 018278 16 IFLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~ 91 (358)
+.|.|+++.||||+|.. +++++++|||+||+++|+|||+||||+|||+||++++. +|||++.||++|+ |+|||++
T Consensus 2 p~~~w~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~id-p~~Gt~~ 80 (557)
T 1zja_A 2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVM-KEYGTME 80 (557)
T ss_dssp CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-TTTCCHH
T ss_pred CcchhhhcCcEEEEEchHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccC-cccCCHH
Confidence 46889999999999852 34456789999999999999999999999999999986 6999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCC----------CCcceeeccCCCC-CCCCCCCCCcccCCCCccCCCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGND 160 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (358)
||++||++||++||+||+|+|+||+|.+|++ +..+|+.|.+... ..+.+|...+. +..+.+....+.+
T Consensus 81 df~~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~-~~~w~~~~~~~~~ 159 (557)
T 1zja_A 81 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG-GSAWEKDPVTGQY 159 (557)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCBTTBCSSCCBCTTS-SBSEEEETTTTEE
T ss_pred HHHHHHHHHHHCCCEEEEEEeccccccchhHHHHhhcCCCCCCccceEecCCcCCCCCccccccCC-CccccccCCcCcE
Confidence 9999999999999999999999999998741 3345776655321 12345543332 1223333445566
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH--------------------------HHHHH
Q 018278 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------------------------SITKV 214 (358)
Q Consensus 161 ~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------------------------~~~~~ 214 (358)
+...+...+||||++||+||++|++++++|++ +||||||+|+|++++. +||++
T Consensus 160 y~~~f~~~~pdLN~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 238 (557)
T 1zja_A 160 YLHYFGRQQPDLNWDTPKLREELYAMLRFWLD-KGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQE 238 (557)
T ss_dssp EECSSCTTSCBBCTTCHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHH
T ss_pred EEecccccCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEeecchhhcccccccCcCCCcccccccccccCChHHHHHHHH
Confidence 66777889999999999999999999999997 9999999999998864 57777
Q ss_pred HHH---hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-CCceeeeccchHHHHH--HHHc-C--chhhhh
Q 018278 215 YME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQ--AAVQ-G--ELWRLK 285 (358)
Q Consensus 215 ~~~---~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~l~--~~~~-~--~~~~~~ 285 (358)
+.+ +..+++++||+|... .+.+..|.... .+++.+|+|.+...-. ..+. + +...+.
T Consensus 239 ~~~~v~~~~~~~~igE~~~~~---------------~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 303 (557)
T 1zja_A 239 MHEKVFDHYDAVTAGEIFGAP---------------LNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFR 303 (557)
T ss_dssp HHHHTGGGSCCEEEEECCSCC---------------GGGHHHHHCGGGCSCSEEECCTTTTTTBCTTSSCBCCCCHHHHH
T ss_pred HHHHHhccCCeEEEEeccCCC---------------HHHHHHHhccCCCcccEEEehhhhhhcccccccccCCCCHHHHH
Confidence 644 233589999999531 34566777642 4577778886541100 0000 0 111111
Q ss_pred hcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCc-----chHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS-----DKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~-----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
..+........ .+...++|++|||++|+.++++... ++.++|++++||+||+|+||||||+|+.+.
T Consensus 304 ~~l~~~~~~~~-~~~~~~~fl~nHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~ 374 (557)
T 1zja_A 304 QTIDKVDAIAG-EYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNY 374 (557)
T ss_dssp HHHHHHHHHHT-TTCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCC
T ss_pred HHHHHHHHhcc-cCCccceeccCCCCcchhhhhCCCchhhHHHHHHHHHHHHHhCCCceEEEecccccccCC
Confidence 11100000000 1234478999999999888765432 258999999999999999999999999985
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-60 Score=466.91 Aligned_cols=308 Identities=19% Similarity=0.275 Sum_probs=229.1
Q ss_pred CCCCceEEEeeec---CCCCCC------------CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--------CCCCCCc
Q 018278 20 FTSPALLFQGFNW---ESSNKA------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMP 76 (358)
Q Consensus 20 ~~~~~v~~q~F~~---~~~~~~------------~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--------~~~gY~~ 76 (358)
|+++.||||+|.. ++++++ +|||+||+++|+|||+||||+|||+||+++. ++|||++
T Consensus 5 ~w~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~GY~~ 84 (484)
T 2aaa_A 5 SWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQ 84 (484)
T ss_dssp HHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSE
T ss_pred hhccCcEEEEeCccccCCCCCCCCCCCccccccCCCCHHHHHHHHHHHHhcCCCEEEeCccccCcccccccCCCCCCcCc
Confidence 4478899999852 222222 4999999999999999999999999999864 5799999
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCC
Q 018278 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDG 156 (358)
Q Consensus 77 ~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (358)
.|||+|+ |+|||.+||++||++||++||+||+|+|+||++.+++....+|+.|.+-.. ...|++... ...|.+.
T Consensus 85 ~dy~~id-~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~---~~~~~~~ 158 (484)
T 2aaa_A 85 QKIYDVN-SNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDS--SSYFHPYCL---ITDWDNL 158 (484)
T ss_dssp EEEEEEC-TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCS--GGGBCCCCB---CCCTTCH
T ss_pred ccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEECcCCcCCCCCCCcccccccccCCc--ccccCCCCC---cccCCCC
Confidence 9999999 999999999999999999999999999999999877533344544432100 000110000 0011110
Q ss_pred C--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCC
Q 018278 157 Q--GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 234 (358)
Q Consensus 157 ~--~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~ 234 (358)
. ..+..+.+...+||||++||+||++|++++++|++++||||||+|+|++++.+||+++.++ .+++++||+|...
T Consensus 159 ~~~~~~w~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~~~~i~~~f~~~~~~~-~~~~~igE~~~~~-- 235 (484)
T 2aaa_A 159 TMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKA-SGVYCVGEIDNGN-- 235 (484)
T ss_dssp HHHHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHH-HTSEEEECCCCSC--
T ss_pred ccccccccccCccccCccccCCHHHHHHHHHHHHHHHHhcCCCEEEecccccCCHHHHHHHHhc-CCcEEEecCCCCC--
Confidence 0 0112233456799999999999999999999999999999999999999999999999876 3489999999641
Q ss_pred CCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc---CchhhhhhcCCCCCCccCCCCCceeecccCCCC
Q 018278 235 GPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ---GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (358)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~ 311 (358)
...+..|. +.+..++||++...+..++. ++...+.+.+..... ....+...++|++|||+
T Consensus 236 -------------~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~f~~nHD~ 298 (484)
T 2aaa_A 236 -------------PASDCPYQ---KVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVAS-DCSDPTLLGNFIENHDN 298 (484)
T ss_dssp -------------HHHHGGGG---GTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHH-HCSCGGGSEECSCCTTS
T ss_pred -------------hHHHHhhc---ccCCceeccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCChhhhceeccCCCc
Confidence 23333343 34677899999988888775 333444332110000 01134567899999999
Q ss_pred CcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 312 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 312 ~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
.|+.+... +.++.++|++++|++||+|+||||||+|+.+..+
T Consensus 299 ~r~~~~~~-~~~~~~~a~a~~l~~~G~P~iy~G~E~g~~~~~d 340 (484)
T 2aaa_A 299 PRFAKYTS-DYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGKV 340 (484)
T ss_dssp CCGGGTCC-CHHHHHHHHHHHHHSSSEEEEETTTTTTCCCCTT
T ss_pred cccccccC-CHHHHHHHHHHHHhcCCccEEEecccccccCCCC
Confidence 99998874 5668899999999999999999999999876443
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-59 Score=466.08 Aligned_cols=317 Identities=18% Similarity=0.262 Sum_probs=234.5
Q ss_pred cCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHH
Q 018278 17 FLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d 92 (358)
.|.|+++.||||+|.. +++++++|||+||+++|+|||+||||+|||+||++++. +|||+|.||++|+ |+|||++|
T Consensus 2 ~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~ldyl~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id-~~~Gt~~d 80 (558)
T 1uok_A 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIM-NEFGTMED 80 (558)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCHHH
T ss_pred CchhhhcCeEEEEecHHhcCCCCCCcCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccC-cccCCHHH
Confidence 4789999999999852 34556789999999999999999999999999999986 6999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccccCC----------CCCcceeeccCCCC-CCCCCCCCCcccCCCCccCCCCCCCC
Q 018278 93 LKSLIQAFRQKGIKCLADMVINHRTAERK----------DGRGIYCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGNDD 161 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (358)
|++||++||++||+||+|+|+||+|.+|+ .+..+|+.|.+... ..+.+|...+. ...+.+....++++
T Consensus 81 f~~lv~~~h~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~-~~~w~~~~~~~~~y 159 (558)
T 1uok_A 81 WDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFS-GSAWQYDEMTDEYY 159 (558)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTS-SBSEEEETTTTEEE
T ss_pred HHHHHHHHHHCCCEEEEEEecccccccchHHHHHhcCCCCCcccceEeccCcCCCCCccccccCC-CccccccCCcCcEE
Confidence 99999999999999999999999999874 13346666654321 12344443321 12223334445666
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH----------------------------HHHH
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----------------------------SITK 213 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~----------------------------~~~~ 213 (358)
...+...+||||++||+||++|++++++|++ +||||||+|+|+++++ +||+
T Consensus 160 ~~~f~~~~pdLn~~np~Vr~~i~~~~~~W~~-~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (558)
T 1uok_A 160 LHLFSKKQPDLNWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLH 238 (558)
T ss_dssp ECSSCTTSCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHH
T ss_pred eeccccccccccCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccccccCCCCCcccccccccccccCChHHHHHHH
Confidence 6777889999999999999999999999998 9999999999998864 4777
Q ss_pred HHHH---hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHh-cCCceeeeccchHHHHH---HHHc-C--chhh
Q 018278 214 VYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQ---AAVQ-G--ELWR 283 (358)
Q Consensus 214 ~~~~---~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~l~---~~~~-~--~~~~ 283 (358)
++.+ ...+++++||+|.. ..+.+..|+.. ..+++.+|+|.+...-. ..+. + +...
T Consensus 239 ~~~~~~~~~~~~~~vgE~~~~---------------~~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 303 (558)
T 1uok_A 239 EMNEEVLSHYDIMTVGEMPGV---------------TTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLT 303 (558)
T ss_dssp HHHHHTGGGSCCEEEEECTTC---------------CHHHHHHHHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHH
T ss_pred HHHHHhhccCCeEEEEeccCC---------------CHHHHHHHhccCCCccceEEehhhhhcccccccccccCCCCHHH
Confidence 7644 23358999999953 14556677764 24567788887642100 0000 0 1111
Q ss_pred hhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
+...+....... ..+...++|++|||++|..+.++... ++.++|++++||+||+|+||||||+|+.+.
T Consensus 304 l~~~l~~~~~~~-~~~~~~~~fl~NHD~~R~~~~~g~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~ 375 (558)
T 1uok_A 304 LKENLTKWQKAL-EHTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNV 375 (558)
T ss_dssp HHHHHHHHHHHT-SSSSCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCC
T ss_pred HHHHHHHHHHhc-ccCCccceeecCCCccchhhhcCCchhhhHHHHHHHHHHHHhCCCceEEEechhcCccCC
Confidence 111100000000 01234478999999999888776432 258899999999999999999999999985
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-59 Score=464.78 Aligned_cols=310 Identities=28% Similarity=0.524 Sum_probs=228.0
Q ss_pred hhcCCCCCCceEEEeeecC---------CCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCCCccccCC-
Q 018278 15 AIFLPFTSPALLFQGFNWE---------SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLYD- 81 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~~---------~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---~~gY~~~d~~~- 81 (358)
...|+|.++.||||+|.|. .++ .||||+||+++|+|||+||||+|||+||+++.+ +|||++.||++
T Consensus 114 ~~~p~w~~~~viyq~F~w~~~~~~f~~~~~~-~gG~~~gi~~~LdyLk~LGvtaIwL~Pi~~~~s~~~~~GYd~~dy~~l 192 (599)
T 3bc9_A 114 PQIPDQEVNHTILQAFYWEMNTGEYATEHPE-EANLWNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDL 192 (599)
T ss_dssp CCCCGGGCCCCEEECCCTTTTSHHHHHHCGG-GGGHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSCSEEETTCS
T ss_pred CCCchhhcCceEEEEeeccccccccccCCCC-CCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCChhhcccc
Confidence 4578999999999999997 333 369999999999999999999999999999654 59999999996
Q ss_pred --------CCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc--CCCC----------Ccceeecc----CCCCCC
Q 018278 82 --------LDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE--RKDG----------RGIYCIFE----GGTSDD 137 (358)
Q Consensus 82 --------id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~--~~~~----------~~~~~~~~----~~~~~~ 137 (358)
|| |+|||++||++||++||++||+||+|+|+||++.. |++. ..++..|. ++....
T Consensus 193 ~e~~q~g~id-p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NH~~~~~~~~wf~~~~~~~~~~~~~~~~w~~~~~pg~~~~ 271 (599)
T 3bc9_A 193 GEFDQKGTVR-TKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFNFPGRNGE 271 (599)
T ss_dssp SCSCBTTBSS-BTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEBCTTCSSSTTCEEEEEEEBCCTTTTTS
T ss_pred cccccccccC-CCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCCCCcCCccccccccCCCCCcccccccccccCCCCCCC
Confidence 99 99999999999999999999999999999999742 3210 00111111 011111
Q ss_pred CCC--CCCCcccC----C-----------CCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEe
Q 018278 138 RLD--WGPSFICR----G-----------DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200 (358)
Q Consensus 138 ~~~--~~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR 200 (358)
+.+ |+.....+ . ...|.. ....++.+..+||||++||+||++|++++++|++++||||||
T Consensus 272 Y~~~~~~w~~f~g~d~~~~~~~~~~f~~~~~~W~~---~~~~~~~~~~~pdLn~~np~Vr~~l~~~l~~Wl~e~GVDGfR 348 (599)
T 3bc9_A 272 YSNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDW---TYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFR 348 (599)
T ss_dssp SCCCCBCGGGEEEEEEETTTTEEEEEEBTTCCCCC---CSSTTCSCCSSEEECTTCHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CccCccccccCCCCCCccccccccccccCCCCccc---ccCCccccccCCCcCCCCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 111 11000000 0 011110 001223455679999999999999999999999889999999
Q ss_pred eccCCCCCHHHHHHHHHh----cCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCC-ceeeeccchHHHHH
Q 018278 201 FDFVKGYAPSITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG-AVAAFDFTTKGILQ 274 (358)
Q Consensus 201 ~D~a~~i~~~~~~~~~~~----~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~df~~~~~l~ 274 (358)
+|+|++++.+||++++++ .+| ++++||+|.. ..+.+.+|+...++ ....|||++...+.
T Consensus 349 lDaa~~i~~~f~~~~~~~l~~~~~p~~~~igE~~~~---------------~~~~~~~y~~~~~~~~~~~fdf~~~~~~~ 413 (599)
T 3bc9_A 349 LDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVE---------------DVDDLKGFLDTVGNPDLRVFDFPLRSFFV 413 (599)
T ss_dssp ETTGGGSCHHHHHHHHHHHHHTCSSCCEEEECCCCC---------------SHHHHHHHHHHHCCTTEEEECHHHHHHHH
T ss_pred ecccccCCHHHHHHHHHHHHHhhCCCeEEEEcccCC---------------CHHHHHHHhcccCCccceecChHHHHHHH
Confidence 999999999999999654 345 8999999964 14566778876544 67889999988888
Q ss_pred HHHcCc-hhhhhhcCCCCCCccC--CCCCceeecccCCCCCcCcCCCCCCc-chHHHHHHHHH-cCCCeeeeecCccccC
Q 018278 275 AAVQGE-LWRLKDSNGKPPGFIG--ILPQNAVTFIDNHDTGSTQRLWPFPS-DKVMLGYAYIL-THPGTPCIVISVTYPL 349 (358)
Q Consensus 275 ~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~v~f~~nHD~~r~~~~~~~~~-~~~~~a~a~l~-~~pG~P~IyyGdE~G~ 349 (358)
.++.+. +.++... .... ..|.++++|++|||++|..++..... ++.++|+|+++ ++||+|+||||||+|+
T Consensus 414 ~~~~g~~l~~~~~~-----~~~~~~~~p~~~v~fl~NHD~~R~~s~~~~~~~~~~~lA~a~ll~t~pG~P~IyyG~E~G~ 488 (599)
T 3bc9_A 414 DMLNGAYMADLRNA-----GLVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRKYQAYAYILTRAEGVPTVYWKDYYIW 488 (599)
T ss_dssp HHTTCCCGGGGGSC-----SGGGSTTTGGGEEECSCCTTTSCSSSCSSCCCCSSHHHHHHHHHHCSSSEEEEEHHHHHTS
T ss_pred HHhcchhHHHHHHH-----HHhhccCCchhheeEecCCCCCccccccccHhHHHHHHHHHHHHHcCCCceEEEechhhCC
Confidence 777543 2222221 1111 13567899999999999988733221 35788989875 6899999999999998
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-60 Score=471.63 Aligned_cols=301 Identities=19% Similarity=0.286 Sum_probs=230.5
Q ss_pred hhcCCCCCCceEEEeeecCC-CCC----------------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCC
Q 018278 15 AIFLPFTSPALLFQGFNWES-SNK----------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP 71 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~~~-~~~----------------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~ 71 (358)
...|.|.++.|+||+|..+. +++ .+|||+||+++|||||+||||+||||||++++++
T Consensus 122 ~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~f~~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~ 201 (585)
T 1wzl_A 122 FTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSH 201 (585)
T ss_dssp CCCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSS
T ss_pred cCCcchhccceEEEEcchhhcCCCcccccccccccCccCCCcccccCCCCHHHHHHHhHHHHHcCCCEEEECCcccCCCC
Confidence 35788999999999985221 111 2699999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC-----------CCcceeeccCCCCCCCCC
Q 018278 72 QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGGTSDDRLD 140 (358)
Q Consensus 72 ~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 140 (358)
|||++.||++|+ |+|||.+||++||++||++||+||||+|+||++.+|++ +..+|+.+.+..
T Consensus 202 ~GYd~~dy~~id-~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~------ 274 (585)
T 1wzl_A 202 HKYDTADYLAID-PQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFP------ 274 (585)
T ss_dssp SCCSCSEEEEEC-TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSS------
T ss_pred CCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEEcCCcCCCccHHHHHHHhcCCCCCccCceEecCCC------
Confidence 999999999999 99999999999999999999999999999999988751 112233222100
Q ss_pred CCCCcccCCCCccCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHH---H
Q 018278 141 WGPSFICRGDKEYSDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---M 216 (358)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~---~ 216 (358)
.......++..+. +...+||||++||+||++|++++++|+ ++||||||+|++++++.+||+++ +
T Consensus 275 -----------~~~~~~~~y~~~~~~~~~~pdln~~~~~vr~~l~~~~~~Wl-~~gvDGfR~D~a~~~~~~f~~~~~~~v 342 (585)
T 1wzl_A 275 -----------VSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREFRRLV 342 (585)
T ss_dssp -----------CCCSSCCSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHHH
T ss_pred -----------CCCCCCCCeeEcccCCCCCCeeCcCCHHHHHHHHHHHHHHH-hCCCeEEEEeccccCCHHHHHHHHHHH
Confidence 0000112333344 677899999999999999999999999 69999999999999999999998 4
Q ss_pred HhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc---hhhhhhcCCCC-
Q 018278 217 ENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKP- 291 (358)
Q Consensus 217 ~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~---~~~~~~~~~~~- 291 (358)
++.+| ++++||+|.... .|+. ..+.+.+++|.++..+...+.++ ...+...+...
T Consensus 343 ~~~~p~~~~igE~~~~~~-------------------~~~~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 402 (585)
T 1wzl_A 343 KSLNPDALIVGEIWHDAS-------------------GWLM-GDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRAR 402 (585)
T ss_dssp HHHCTTCEEEECCSSCCG-------------------GGCS-SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEEecCchH-------------------HHhc-CCCcCEEECHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 55677 899999996521 1221 23456778888887777766442 12221111000
Q ss_pred CCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 292 PGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 292 ~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
.......+...++|++|||++|+.+.++.+.++.++|++++|++||+|+||||||+|+.+..+
T Consensus 403 ~~y~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~~~~~~pG~P~iy~G~E~g~~~~~d 465 (585)
T 1wzl_A 403 MLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATD 465 (585)
T ss_dssp TTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCST
T ss_pred HhcchhhhccceEecCCCCchhhHHhcCCcHHHHHHHHHHHHhCCCCcEEEeecccCcCCCCC
Confidence 001001124568999999999999888766788999999999999999999999999987654
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-60 Score=469.45 Aligned_cols=311 Identities=21% Similarity=0.310 Sum_probs=232.6
Q ss_pred hhcCCCCCCceEEEeeecCCC--CC---------------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCC
Q 018278 15 AIFLPFTSPALLFQGFNWESS--NK---------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP 71 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~~~~--~~---------------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~ 71 (358)
...|.|.++.|+||+|. +++ ++ .+|||+||+++|+|||+||||+|||+||++++++
T Consensus 122 ~~~~~W~~~~viYqi~~-~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~ 200 (583)
T 1ea9_C 122 FQPPAWVKDAIFYQIFP-ERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTN 200 (583)
T ss_dssp CCCCTHHHHCCCCEECS-TTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSS
T ss_pred CCCCcccccceEEEEch-HHhcCCCCccCccccccccCCCCcccccCCcCHHHHHHhhHHHHHcCCCEEEECCCccCCCC
Confidence 35678889999999985 322 11 2689999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCC
Q 018278 72 QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDK 151 (358)
Q Consensus 72 ~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (358)
|||++.||++|+ |+|||++||++||++||++||+||||+|+||++.+|++... ....+..+++.+|...... .
T Consensus 201 ~GYd~~dy~~id-p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~---~~~~g~~s~y~~~y~~~~~---~ 273 (583)
T 1ea9_C 201 HKYDTEDYFQID-PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVD---VLKNGEKSKYKDWFHIRSL---P 273 (583)
T ss_dssp STTSCSCTTCCC-TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHH---HHTTTTTCTTTTSSCBCSS---S
T ss_pred CCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEEccccCCCccHHHHH---HHhcCCCCCccCceEecCC---C
Confidence 999999999999 99999999999999999999999999999999988741000 0011122223333221100 0
Q ss_pred ccCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHH---HHhcCC-CeEEE
Q 018278 152 EYSD-GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVG 226 (358)
Q Consensus 152 ~~~~-~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~---~~~~~p-~~~~g 226 (358)
.+.+ ...++..+.+...+||||++||+||++|++++++|++++||||||+|++++++.+||+++ +++.+| ++++|
T Consensus 274 ~~~~~~~~~y~~~~~~~~~pdln~~~p~Vr~~l~~~~~~W~~~~gvDGfR~D~~~~~~~~f~~~~~~~v~~~~p~~~~ig 353 (583)
T 1ea9_C 274 LEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILG 353 (583)
T ss_dssp CCCTTSCCSBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCCCCCCCCceecCCCCCcceeccCCHHHHHHHHHHHHHHHHhcCceEEEecccccCCHHHHHHHHHHHHhhCCCeEEEE
Confidence 0001 112444556678899999999999999999999999779999999999999999999998 455677 89999
Q ss_pred eccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc---hhhhhhcCCCC-CCccCCCCCce
Q 018278 227 EKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKP-PGFIGILPQNA 302 (358)
Q Consensus 227 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~ 302 (358)
|+|.... .|+. ..+.+.+++|.++..+...+.++ ...+.+.+... .......+...
T Consensus 354 E~~~~~~-------------------~~~~-~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 413 (583)
T 1ea9_C 354 EVWHESS-------------------IWLE-GDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVM 413 (583)
T ss_dssp CCCSCCT-------------------TTTT-TTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTC
T ss_pred EEcCChH-------------------HHhc-CCCcCEEECHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcchhhhhhh
Confidence 9996522 1111 23466788888887777766442 12222111100 01100112345
Q ss_pred eecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 303 VTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 303 v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
++|++|||+.|+.+..+.+.++.++|++++||+||+|+||||||+|+.+..
T Consensus 414 ~~~~~nHD~~r~~~~~~~~~~~~~la~~~~~~~pG~P~iy~G~E~g~~~~~ 464 (583)
T 1ea9_C 414 FNLLDSHDTARLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGH 464 (583)
T ss_dssp EECSCCTTSCCHHHHHCSCHHHHHHHHHHHTTSSSEECCCSSCSSCCCCCS
T ss_pred eeecCCCCchhhhhhcCCcHHHHHHHHHHHHcCCCCcEEEeccccCccCCC
Confidence 899999999999888776677899999999999999999999999998754
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-59 Score=467.38 Aligned_cols=319 Identities=16% Similarity=0.185 Sum_probs=236.9
Q ss_pred hhcCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCH
Q 018278 15 AIFLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~ 90 (358)
.+.|.|+++.||||+|.. +++++++|||+||+++|+|||+||||+|||+||++++. +|||++.||++|| |+|||+
T Consensus 9 ~~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~~GY~~~dy~~id-~~~Gt~ 87 (589)
T 3aj7_A 9 ETEPKWWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVW-PTYGTN 87 (589)
T ss_dssp GGSCCHHHHCCEEEECGGGSCCSSSSSSCCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEEC-TTTCCH
T ss_pred CCCccchhhCeEEEEEhHHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCcCcccccccc-cccCCH
Confidence 457889999999999852 34567789999999999999999999999999999985 6899999999999 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccCCC----------CCcceeeccCCCC-------CCCCCCCCCcccCCCCcc
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTS-------DDRLDWGPSFICRGDKEY 153 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 153 (358)
+||++||++||++||+||+|+|+||++.+|++ +..+|+.|.++.. ..+.+|...+. ...+.+
T Consensus 88 ~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~g~~~~p~~~~~~f~-g~~w~~ 166 (589)
T 3aj7_A 88 EDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFG-GSAWTF 166 (589)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCSSSTTGGGBCEECCSEECTTSCEECSSCBBCTTS-SBSEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEecccccccchhHHHHHhcCCCCCCCCceeecCCcccccccCCCCCCcccccCC-Ccccee
Confidence 99999999999999999999999999998751 2345666654321 12345543321 222333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEeeccCCCCC------------------------
Q 018278 154 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD-WMNWLKTEIGFDGWRFDFVKGYA------------------------ 208 (358)
Q Consensus 154 ~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~-~~~~w~~~~gvDGfR~D~a~~i~------------------------ 208 (358)
....+.++...+...+||||++||+||++|++ ++++|++ +||||||+|+|+++.
T Consensus 167 ~~~~~~~y~~~f~~~~pdLN~~np~Vr~~l~~~~~~~Wl~-~gvDGfRlDa~~~i~~~~~~~d~~~~~~~~~~~~~~~~~ 245 (589)
T 3aj7_A 167 DEKTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWLD-HGVDGFRIDVGSLYSKVVGLPDAPVVDKNSTWQSSDPYT 245 (589)
T ss_dssp ETTTTEEEECSSSTTCCBBCTTCHHHHHHHHHHHTHHHHH-TTCCEEEETTGGGSCCCTTCCCCCCCCTTCSSBCCHHHH
T ss_pred cCCCCeEEECccCCCCCccCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEccccccccccCCCcCCccccccccccccccc
Confidence 34445666777889999999999999999999 9999998 899999999999984
Q ss_pred ------HHHHHHHHH----hc--CC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-CCceeeeccchHHHHH
Q 018278 209 ------PSITKVYME----NT--SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQ 274 (358)
Q Consensus 209 ------~~~~~~~~~----~~--~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~l~ 274 (358)
.+||+++.+ .. +| ++++||+|... .+.+..|.... .++...|+|.....
T Consensus 246 ~n~~~~~~~l~~~~~~~~~~v~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~f~f~~~~~-- 308 (589)
T 3aj7_A 246 LNGPRIHEFHQEMNQFIRNRVKDGREIMTVGEMQHAS---------------DETKRLYTSASRHELSELFNFSHTDV-- 308 (589)
T ss_dssp SSCTTHHHHHHHHHHHHHHHCSSCCCCEEEEEEECCC---------------HHHHHHHHCGGGCSCSEEEECHHHHT--
T ss_pred cccHHHHHHHHHHHHHHHHHhccCCCeEEEEEeCCCC---------------HHHHHHhhccCCCccceeeehhhhhh--
Confidence 256777654 33 34 89999999641 34556676543 24566677765311
Q ss_pred HHH--------cCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCC-----cchHHHHHHHHHcCCCeeee
Q 018278 275 AAV--------QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-----SDKVMLGYAYILTHPGTPCI 341 (358)
Q Consensus 275 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~-----~~~~~~a~a~l~~~pG~P~I 341 (358)
... ..+...+...+..........+...++|++|||++|+.++++.+ .++.++|++++||+||+|+|
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~fl~NHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~i 388 (589)
T 3aj7_A 309 GTSPLFRYNLVPFELKDWKIALAELFRYINGTDCWSTIYLENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYV 388 (589)
T ss_dssp TEETTEEEEECCCCHHHHHHHHHTTTGGGTTSSCCCEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHHTSSSEEEE
T ss_pred hcccccccccCCCCHHHHHHHHHHHHHhcccCCCcccccccCCCCcchHHHhCCCchhhHHHHHHHHHHHHHHCCCCcEE
Confidence 100 11122222221111100100233457899999999988877643 25689999999999999999
Q ss_pred ecCccccCCCCC
Q 018278 342 VISVTYPLFHPL 353 (358)
Q Consensus 342 yyGdE~G~~~~~ 353 (358)
|||||+|+.+..
T Consensus 389 y~G~E~G~~~~~ 400 (589)
T 3aj7_A 389 YQGQELGQINFK 400 (589)
T ss_dssp ETTGGGTCCCCC
T ss_pred EcChhcccCCCC
Confidence 999999999863
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-60 Score=479.40 Aligned_cols=318 Identities=21% Similarity=0.313 Sum_probs=227.6
Q ss_pred hcCCCCCCceEEEeeecCCCCC----------------C---------CCchHHHHhhhhhHHHcCCCEEEeCCCCCC--
Q 018278 16 IFLPFTSPALLFQGFNWESSNK----------------A---------GGWYNSLKNSIPDLSNAGITHVWLPPPSQS-- 68 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~~~~~~----------------~---------~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-- 68 (358)
++|+|.+++||||+|. +++.+ + +|||+||+++|||||+||||+|||+||+++
T Consensus 1 ~~~~~~~~~viYqI~p-~~F~d~d~~n~~~~~~~~~~d~~~~~~~~~~gGdl~gi~~kLdyLk~LGv~aIwL~Pi~~~~~ 79 (686)
T 1qho_A 1 SSSASVKGDVIYQIII-DRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLD 79 (686)
T ss_dssp CTTSCCTTCCEEEECG-GGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECS
T ss_pred CCcccCccCcEEEEec-cccCCCCcccCcccccccccCCCccccccccCCCHHHHHHhhHHHHhcCCCEEEECccccCCc
Confidence 4688999999999996 44321 1 599999999999999999999999999985
Q ss_pred -------CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC---CCcceeeccCCCC--C
Q 018278 69 -------VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD---GRGIYCIFEGGTS--D 136 (358)
Q Consensus 69 -------~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~---~~~~~~~~~~~~~--~ 136 (358)
.++|||++.||++|| |+|||++||++||++||++||+||+|+|+||++..|.. .......+.++.. .
T Consensus 80 ~~~~~g~~~~~GYd~~Dy~~id-p~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~g~~~~~ 158 (686)
T 1qho_A 80 TLAGTDNTGYHGYWTRDFKQIE-EHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGN 158 (686)
T ss_dssp SCSSTTCCCTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEEC
T ss_pred ccccCCCCCcCCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccCccccCCccccc
Confidence 367999999999999 99999999999999999999999999999999998742 1111111111100 0
Q ss_pred CCCCC-CCCcccCCC-CccCCCCCCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH
Q 018278 137 DRLDW-GPSFICRGD-KEYSDGQGNDDTGEDF-----QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (358)
Q Consensus 137 ~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~ 209 (358)
.+.+| ...+..... ..|.+....+ .+.+ ..+||||++||+||++|++++++|++ +||||||+|++++++.
T Consensus 159 ~~~~~~~~~f~~~~~i~~w~~~~~~~--y~~~~~~~~~~~pDLn~~np~Vr~~l~~~~~~Wl~-~GVDGfRlDa~~~i~~ 235 (686)
T 1qho_A 159 YFDDATKGYFHHNGDISNWDDRYEAQ--WKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHFNS 235 (686)
T ss_dssp SSSCTTTCCBCCSCBCSCTTCHHHHH--HSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCH
T ss_pred CCCCcccCeeecCCCcCcCCCCcccc--eeecccCCcCCCCccccCCHHHHHHHHHHHHHHHh-cCCCEEEEeccccCCH
Confidence 11111 111110011 1221110000 0111 45899999999999999999999999 9999999999999999
Q ss_pred HHHHHHHH---hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhh
Q 018278 210 SITKVYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWR 283 (358)
Q Consensus 210 ~~~~~~~~---~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~ 283 (358)
+||+++.+ +.++++++||.|.+.+ + .........|.... ...+|||++...+...+.+ +...
T Consensus 236 ~f~~~~~~~v~~~~~~~~vgE~~~~~~------~----~~~~~~~~~~~~~~--~~~~~df~~~~~~~~~~~~~~~~~~~ 303 (686)
T 1qho_A 236 GFSKSLADKLYQKKDIFLVGEWYGDDP------G----TANHLEKVRYANNS--GVNVLDFDLNTVIRNVFGTFTQTMYD 303 (686)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCCCCCT------T----STTHHHHHHHHHHS--SCEEBCHHHHHHHHHHHTSCSSCHHH
T ss_pred HHHHHHHHHHHhcCCceEEeeeecCCC------c----ccchhhhhhhcccC--CCeeeccHHHHHHHHHHhcCCCCHHH
Confidence 99998854 4467999999986410 0 00123445565532 2457999999888888743 2333
Q ss_pred hhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
+...+..... ....+...++|++|||++|+.+ +..+.++.++|++++|++||+|+||||||+|+.+.
T Consensus 304 l~~~l~~~~~-~~~~~~~~~~fl~NHD~~R~~s-~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~ 370 (686)
T 1qho_A 304 LNNMVNQTGN-EYKYKENLITFIDNHDMSRFLS-VNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGG 370 (686)
T ss_dssp HHHHHHHHHH-HCTTGGGCEECSCCTTSCCHHH-HCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCC
T ss_pred HHHHHHHHHH-hccchhhceeeccCCCCccccc-cCCCHHHHHHHHHHHHcCCCcCEEEecccccccCC
Confidence 3322110000 0113456789999999999988 34355688999999999999999999999998754
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-60 Score=467.03 Aligned_cols=307 Identities=21% Similarity=0.296 Sum_probs=226.3
Q ss_pred CCCCCCceEEEeeec---CCCCCC------------CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--------CCCCC
Q 018278 18 LPFTSPALLFQGFNW---ESSNKA------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGY 74 (358)
Q Consensus 18 ~~~~~~~v~~q~F~~---~~~~~~------------~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--------~~~gY 74 (358)
|.| +..+|||+|.. ++++++ ||||+||+++|+|||+||||+|||+||++++ ++|||
T Consensus 4 ~~w-~~~~iYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~GY 82 (478)
T 2guy_A 4 ADW-RSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGY 82 (478)
T ss_dssp HHH-TTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTSC
T ss_pred hhh-ccCcEEEEecccccCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCCCCCC
Confidence 445 77899999951 222222 4999999999999999999999999999864 57999
Q ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccC
Q 018278 75 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (358)
Q Consensus 75 ~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (358)
++.|||+|| |+|||++||++||++||++||+||+|+|+||++.+++....+|..|.+.. ...|.... + ....|.
T Consensus 83 ~~~d~~~id-p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~---~~~~~~~~-~-~~~~~~ 156 (478)
T 2guy_A 83 WQQDIYSLN-ENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFS---SQDYFHPF-C-FIQNYE 156 (478)
T ss_dssp SEEEEEEEC-TTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCC---SGGGBCCS-C-BCCCTT
T ss_pred CcccccccC-ccCCCHHHHHHHHHHHHHCCCEEEEEECcccCCCCCCcccccccccCCCC---chhhcCCC-C-cccCCC
Confidence 999999999 99999999999999999999999999999999998753333444333210 00110000 0 000111
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCC
Q 018278 155 DGQ--GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSL 232 (358)
Q Consensus 155 ~~~--~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~ 232 (358)
+.. .+...+.+...+||||++||+||++|++++++|++++||||||+|+|++++.+||+++.++ ..++++||+|...
T Consensus 157 ~~~~~~~~w~g~~~~~~~dln~~~~~V~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~f~~~~~~~-~~~~~igE~~~~~ 235 (478)
T 2guy_A 157 DQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKA-AGVYCIGEVLDGD 235 (478)
T ss_dssp CHHHHHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHH-HTSEEEECCCCSC
T ss_pred CCcccccccccCCCCCCCeeCcCCHHHHHHHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHhc-CCceEEeeecCCC
Confidence 100 0111122345689999999999999999999999999999999999999999999999875 3489999999641
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc---CchhhhhhcCCCCCCccCCCCCceeecccCC
Q 018278 233 SYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ---GELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309 (358)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nH 309 (358)
.+.+..|. +.+..++||++...+..++. ++...+.+....... ....+...++|++||
T Consensus 236 ---------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~f~~nH 296 (478)
T 2guy_A 236 ---------------PAYTCPYQ---NVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKS-DCPDSTLLGTFVENH 296 (478)
T ss_dssp ---------------HHHHGGGG---GTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHH-HSSCGGGSEECSCCT
T ss_pred ---------------chhHHhhh---ccCccccCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-hCcChhhceeeccCC
Confidence 23333343 34677899999888887774 233333332110000 011245668999999
Q ss_pred CCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 310 DTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 310 D~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
|+.|+.+... +.++.++|++++|++||+|+||||+|+|+.+.
T Consensus 297 D~~r~~~~~~-~~~~~~~a~a~~l~~pG~P~iy~G~E~g~~~~ 338 (478)
T 2guy_A 297 DNPRFASYTN-DIALAKNVAAFIILNDGIPIIYAGQEQHYAGG 338 (478)
T ss_dssp TSCCGGGTCC-CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCC
T ss_pred CCcccccccC-CHHHHHHHHHHHHcCCCccEEEeehhhccCCC
Confidence 9999988764 55678999999999999999999999998753
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-59 Score=457.67 Aligned_cols=304 Identities=30% Similarity=0.487 Sum_probs=228.8
Q ss_pred CCCceEEEeeecCCCCCCCCch-HHHHhhhhhHHHcCCCEEEeCCCC----------CCCCCCCCCccccCCCC-CCCCC
Q 018278 21 TSPALLFQGFNWESSNKAGGWY-NSLKNSIPDLSNAGITHVWLPPPS----------QSVAPQGYMPGRLYDLD-ASKYG 88 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~-~gl~~~L~yl~~LGv~~I~l~Pi~----------~~~~~~gY~~~d~~~id-~~~~G 88 (358)
.+++||+|.|+|+++.+.|||| +||+++|||||+||||+||||||+ +++++|||+ ||+|| .|+||
T Consensus 14 ~~~~vi~q~F~w~~~~~~gGd~~~gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~---~~~id~~p~~G 90 (527)
T 1gcy_A 14 GGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYF---WHDFNKNGRYG 90 (527)
T ss_dssp GGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTT---CSSSCSCSSSC
T ss_pred CCCcEEEEEEEcCCCcccCCcHHHHHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcc---cccCCCCCCCC
Confidence 4679999999999998889999 999999999999999999999999 555789999 88888 49999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-C
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-Q 167 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 167 (358)
|++||++||++||++||+||+|+|+||++.+|+.. .|. . +..+|.....+.....|. +++..+..+ .
T Consensus 91 t~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~~~~~--~~~--~-----~~~~~y~~~~~~~~~~~~---~~~~~~~~f~~ 158 (527)
T 1gcy_A 91 SDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDK--EIN--L-----PAGQGFWRNDCADPGNYP---NDCDDGDRFIG 158 (527)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSC--SCC--C-----CSSSSCBGGGSCCCSSSC---BTTBSSCCSTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeecCcCCCCCCc--ccc--C-----CCcchhcccccCCCCCcc---cCcccCccccc
Confidence 99999999999999999999999999999988621 122 0 011121111111111221 233333344 8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcC-CCeEEEeccCCCCCCCCCCCCCCCCC
Q 018278 168 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS-PDFAVGEKWDSLSYGPDGKPDANQDG 246 (358)
Q Consensus 168 ~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~-p~~~~gE~~~~~~~~~~~~~~~~~~~ 246 (358)
.+||||++||+||++|++++++|++++||||||+|+|++++.+||+++.++.+ |.+++||+|....-. ....|....
T Consensus 159 ~~~dLn~~np~Vr~~i~~~~~~w~~~~gvDGfRlDa~~~i~~~f~~~~~~~~~~p~~~vgE~~~~~~~~--~~~~y~~~~ 236 (527)
T 1gcy_A 159 GDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEY--PNWDWRNTA 236 (527)
T ss_dssp STTBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGS--CTTSGGGGS
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHhcCCceEEEEecCCCCcc--ccccccccc
Confidence 89999999999999999999999999999999999999999999999988775 789999999752100 001221111
Q ss_pred -chhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCC-----
Q 018278 247 -HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF----- 320 (358)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~----- 320 (358)
..+.+..|+... ....|||.+...+..++. ....+ .... ......|...++|++|||+.|+.+..+.
T Consensus 237 ~~~~~~~~~~~~~--~~~~fdf~~~~~l~~~~~-~~~~l-~~~~---~~~~~~~~~~~~f~~nHD~~r~~~~~~g~~~~~ 309 (527)
T 1gcy_A 237 SWQQIIKDWSDRA--KCPVFDFALKERMQNGSI-ADWKH-GLNG---NPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWA 309 (527)
T ss_dssp CHHHHHHHHHHHH--TSCEECHHHHHHHHHSCG-GGGGG-SGGG---CSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSC
T ss_pred chhhHHHHHhhcc--CCceechHHHHHHHHHHH-Hhhhh-hhcC---CccccChhhceEEEeCCCCCCcccccCcccccc
Confidence 134556676643 466799998877776654 23332 1111 1112245678999999999998765432
Q ss_pred -CcchHHHHHHHHHcCCCeeeeecCcccc
Q 018278 321 -PSDKVMLGYAYILTHPGTPCIVISVTYP 348 (358)
Q Consensus 321 -~~~~~~~a~a~l~~~pG~P~IyyGdE~G 348 (358)
..++.++|++++|++||+|+||||||++
T Consensus 310 ~~~~~~~~a~a~~lt~~G~P~iy~G~E~~ 338 (527)
T 1gcy_A 310 LQDGLIRQAYAYILTSPGTPVVYWDHMYD 338 (527)
T ss_dssp CCGGGHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred CChhHHHHHHHHHhCCCCcceeecccccC
Confidence 3578999999999999999999999975
|
| >4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-60 Score=468.67 Aligned_cols=319 Identities=20% Similarity=0.289 Sum_probs=224.1
Q ss_pred hcCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHH
Q 018278 16 IFLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~ 91 (358)
.+|+|++++||||+|.. +++++++|||+||++||||||+||||+||||||+++++ +|||++.||++|| |+|||++
T Consensus 2 a~~~Ww~~~viYei~~~~F~d~~~dg~Gdl~Gi~~kLdYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vd-p~~Gt~~ 80 (549)
T 4aie_A 2 ASASWWKNAVVYQVYPKSFQDSNGDGIGDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAID-PQYGTMA 80 (549)
T ss_dssp --CCGGGSCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEEC-TTTCCHH
T ss_pred CCchhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcC-cccCCHH
Confidence 36889999999999852 45667789999999999999999999999999999975 8999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCC----------CCCcceeeccCCC-CCCCCCCCCCcccCCCCccCCCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERK----------DGRGIYCIFEGGT-SDDRLDWGPSFICRGDKEYSDGQGND 160 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (358)
||++||++||++||+||||+|+||||.+|+ .+..+|+.|.+.. ...+.+|...+. .....+.+..+.+
T Consensus 81 dfk~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 159 (549)
T 4aie_A 81 DMDELISKAKEHHIKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFS-GSAWKYDERSGQY 159 (549)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTSTTGGGBCEECCBTTBCSSCCBCTTS-SBSEEEETTTTEE
T ss_pred HHHHHHHHHHHCCCEEEEEECccCCcCCcchhhhhhhcccccccccccccCCcccCCCCCcccccC-CCcccccccCCce
Confidence 999999999999999999999999999875 1234455554422 222333433221 1223344455566
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHH--------------HHHH---hcCCCe
Q 018278 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK--------------VYME---NTSPDF 223 (358)
Q Consensus 161 ~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~--------------~~~~---~~~p~~ 223 (358)
..+.+...+||||++||+|+++|++++++|++ +||||||+|+|++++++++. .+.+ ...+++
T Consensus 160 ~~~~f~~~~~dln~~np~v~~~i~~~~~~W~e-~gvDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (549)
T 4aie_A 160 YLHFFADQQPDLNWQNTELRQKIYNMMNFWLD-KGIGGFRMDVIELIGKDPDKNIRENGPMLHPYLQEMNKATFGKRDVM 238 (549)
T ss_dssp EECSSCTTSCBBCTTCHHHHHHHHHHHHHHHH-TTCCEEEETTGGGTTCBGGGTBCTTCTTHHHHHHHHHHHTTTTTCCE
T ss_pred EecccCCCCCccccCCHHHHHHHHHHHHHHHH-hcCCceeEecHHhccccchhhhcccccccchHHHhhhhcccccccee
Confidence 67788899999999999999999999999998 89999999999999765432 2211 123488
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcC-CceeeeccchHHHHHHHHcC-------chhhhhhcCCCCCCcc
Q 018278 224 AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG-GAVAAFDFTTKGILQAAVQG-------ELWRLKDSNGKPPGFI 295 (358)
Q Consensus 224 ~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~df~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~ 295 (358)
++||.|... ...+..|..... .....|+|............ ....+...........
T Consensus 239 ~vgE~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (549)
T 4aie_A 239 TVGETWNAT---------------PKIAEEYSDPDRHELSMVFQFENQSLDQQPGKEKWDLKPLDLGELKKVLVKWQTKI 303 (549)
T ss_dssp EEEECTTCC---------------HHHHHHHHCGGGCSCSEEECCGGGGGGBCTTSCTTSBCCCCHHHHHHHHHHHHHSS
T ss_pred eeecccCCC---------------HHHHHHhcCCccccccccccccccccccccccccccccccchHHHHHHHHHhhhhc
Confidence 999999641 344455554322 23334444322110000000 0000000000000000
Q ss_pred CCCCCceeecccCCCCCcCcCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 296 GILPQNAVTFIDNHDTGSTQRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 296 ~~~~~~~v~f~~nHD~~r~~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
.......++|++|||++|..++++.. .++.++++++++|+||+|+||||||+|+.+.
T Consensus 304 ~~~~~~~~~f~~nHD~~r~~s~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~ 364 (549)
T 4aie_A 304 DFDHAWNSLFWENHDIPRVISRWGNDQEYRVQCAKMFAIILHMMHGTPYIFNGEEIGMTNC 364 (549)
T ss_dssp CTTSCCCEECSCCTTSCCHHHHHSCCSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCC
T ss_pred cccccccceeeccCCchhhhhhcCCcHHHHHHHHHHHHHHHhcCCCceEEEcchhhCccCC
Confidence 11123446899999999988766533 2467889999999999999999999999764
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-59 Score=470.26 Aligned_cols=306 Identities=20% Similarity=0.264 Sum_probs=231.8
Q ss_pred CceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 23 PALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 23 ~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
..||||++.. +++++++|||+||+++|+||++|||++|||+||++++++|||++.||++|+ |+|||++||++||++
T Consensus 37 ~~viY~i~~~~f~~~~~~~~G~~~g~~~~l~yl~~lGv~~i~l~Pi~~~~~~~gY~~~dy~~i~-~~~Gt~~d~~~lv~~ 115 (669)
T 3k8k_A 37 ADISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVN-PQLGTESDFDRLVTE 115 (669)
T ss_dssp SCCEEEECTTTSCCSSSSSSCCHHHHHTTHHHHHTTTCSEEEECCCSSBSSTTCCSBSCTTSCC-TTTCCHHHHHHHHHH
T ss_pred CcEEEEEEhHHhcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccccc-cccCCHHHHHHHHHH
Confidence 3899999752 455677899999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccccCC----------CCCcceeeccC-CC-----------------CCCCCCCCCCcccCC--
Q 018278 100 FRQKGIKCLADMVINHRTAERK----------DGRGIYCIFEG-GT-----------------SDDRLDWGPSFICRG-- 149 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~----------~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~-- 149 (358)
||++||+||+|+|+||+|.+|+ .+..+|+.|.+ .. .+.+.+|...+....
T Consensus 116 ~h~~gi~vi~D~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~f~g~~~~ 195 (669)
T 3k8k_A 116 AHNRGIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDETAAV 195 (669)
T ss_dssp HHHTTCEEEEEECCSEEETTSHHHHHHHHCTTSTTGGGBCEESCHHHHHHTTCSTTSCSSGGGGCCGGGEEESCSCCCCE
T ss_pred HHHcCCEEEEEECcccCCCcCHHHHHHhhCCCCCccceeEECCCCcccccccccccccccccccCCCcccccccCCCccc
Confidence 9999999999999999999874 24456776662 10 112222211110000
Q ss_pred -----------------------------------------------------------------------------CCc
Q 018278 150 -----------------------------------------------------------------------------DKE 152 (358)
Q Consensus 150 -----------------------------------------------------------------------------~~~ 152 (358)
.+.
T Consensus 196 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (669)
T 3k8k_A 196 KGLLKFTLDWSNAPSPILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRTSNASF 275 (669)
T ss_dssp EEEEEEEEECTTTTSCEEEEEECSSCCCCCCCCCCTTCCEEEETTTEEEECEEEETTEEEEEEEEEESSCEEEESCCSSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000
Q ss_pred c----------------------------------CCCCCCCCCCCCCCC-CCCCCCC-------CHHHHHHHHHHHHHH
Q 018278 153 Y----------------------------------SDGQGNDDTGEDFQP-APDIDHL-------NPRVQKELSDWMNWL 190 (358)
Q Consensus 153 ~----------------------------------~~~~~~~~~~~~~~~-~~dln~~-------n~~v~~~l~~~~~~w 190 (358)
| ....+.++.+.+... |||||++ ||+| ++|++++++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~~~~qPDLN~~~~~~~~~Np~V-~~l~dvl~~W 354 (669)
T 3k8k_A 276 WPSGTKYGASSSSEKLALNKDFKLTNAGNPANIMFDSQQITYFHSHFCTDWFADLNYGPVDQAGESPAY-QAIADAAKGW 354 (669)
T ss_dssp CCTTCEEBBSSTTCCBCTTSCEECBCSSSCBCBCBTTCCCCEEECTTSCTTEEEBCCCSGGGGGGCHHH-HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccCCccCCCCCccCCCCHHH-HHHHHHHHHH
Confidence 1 111333445566667 9999999 9999 9999999999
Q ss_pred HHhcCCCeEeeccCCCC--------CHHHHHHHH---Hh------cCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHH
Q 018278 191 KTEIGFDGWRFDFVKGY--------APSITKVYM---EN------TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALK 252 (358)
Q Consensus 191 ~~~~gvDGfR~D~a~~i--------~~~~~~~~~---~~------~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (358)
++ .||||||+|+|+++ +.+||+++. ++ .+| +++|||+|.. ...+.
T Consensus 355 l~-~GVDGFRlDaa~~i~k~~~~~~~~~f~~e~~~~v~~~~~~~g~~pd~~lvGEv~~~----------------~~~~~ 417 (669)
T 3k8k_A 355 IA-RGVDGLRLDAVKHIYHSETSEENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSE----------------YDKVA 417 (669)
T ss_dssp HT-TTCCEEEETTGGGSSSCSSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEEEECCCSC----------------HHHHG
T ss_pred HH-CCCCEEEEechhhhhhccCCCccHHHHHHHHHHHHHHhhhcccCCCeEEEeccCCC----------------HHHHH
Confidence 99 59999999999999 688998884 34 456 8999999963 34444
Q ss_pred HHHHhcCCceeeeccchHHHHHHHHcC-chhh----hhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHH
Q 018278 253 DWVQAAGGAVAAFDFTTKGILQAAVQG-ELWR----LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVML 327 (358)
Q Consensus 253 ~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~ 327 (358)
.|. .++.++|+|.+...+..++.+ +... +.......... ......++|++|||++|+.++++.+.+++++
T Consensus 418 ~y~---~~l~~vfnF~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~Fl~NHD~~R~~s~~g~d~~~~kl 492 (669)
T 3k8k_A 418 PYY---KGLPALFEFSFWYRLEWGINNSTGCYFAKDILSYQQKYANY--RSDYIEATKLSNHDEDRTSSKLGKSADKCKL 492 (669)
T ss_dssp GGG---GTCSEEECHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTT--CTTCEEECCSCCTTSCCHHHHTTTCHHHHHH
T ss_pred HHh---ccCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh--cccceeeeeccCCCCCccccccCCCHHHHHH
Confidence 555 257889999998877766532 2211 11111000000 0112357899999999999988767788999
Q ss_pred HHHHHHcCCCeeeeecCccccCCCC
Q 018278 328 GYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 328 a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
|+++|||+||+|+||||||+||.+.
T Consensus 493 a~allltlpG~P~IYyGdEiGm~~~ 517 (669)
T 3k8k_A 493 AAAVLLTSAGHPYIYYGEELGLYGT 517 (669)
T ss_dssp HHHHHHTSSSCCEEETTTTTTCCCC
T ss_pred HHHHHHhCCCccEEEecccccccCC
Confidence 9999999999999999999999975
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=459.01 Aligned_cols=318 Identities=20% Similarity=0.303 Sum_probs=231.9
Q ss_pred cCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHH
Q 018278 17 FLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d 92 (358)
.|.|+++.||||+|.. +++++++|||+||+++|+|||+||||+|||+||++++. +|||++.||++|+ |+|||++|
T Consensus 2 ~~~w~~~~viYqi~~~~F~d~~~dg~Gd~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~~gY~~~dy~~id-~~~Gt~~d 80 (555)
T 2ze0_A 2 KKTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADNGYDISDYYAIM-DEFGTMDD 80 (555)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTCSCSEEEEEC-GGGCCHHH
T ss_pred ChhhhhcCcEEEEEchHhcCCCCCCcCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCcCcccccccC-cccCCHHH
Confidence 4789999999999862 44566789999999999999999999999999999985 6999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccccCC----------CCCcceeeccCCCC-CCCCCCCCCcccCCCCccCCCCCCCC
Q 018278 93 LKSLIQAFRQKGIKCLADMVINHRTAERK----------DGRGIYCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGNDD 161 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (358)
|++||++||++||+||+|+|+||+|.+|+ .+..+|+.|.+... ..+.+|...+. ...+.+....+.++
T Consensus 81 ~~~lv~~~h~~Gi~vilD~V~NH~~~~~~~f~~~~~~~~~~~~~~y~~~~~~~g~~p~~~~~~f~-~~~w~~~~~~~~~~ 159 (555)
T 2ze0_A 81 FDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNNWESIFG-GSAWQYDERTGQYY 159 (555)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSBCCTTSHHHHHHHHCSSSTTGGGBCEECCBTTBCSSCEECTTS-SBSEEEETTTTEEE
T ss_pred HHHHHHHHHHCCCEEEEEEecccccchhhHHHHhhcCCCCCccccccccCCCCCCCCCcccccCC-CccceecCCCCcee
Confidence 99999999999999999999999999874 23346666654321 12344443321 12223334445566
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH-----------------------------HHH
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------------------------SIT 212 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------------------------~~~ 212 (358)
...+...+||||++||+||++|++++++|++ +||||||+|+|++++. +++
T Consensus 160 ~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 2ze0_A 160 LHIFDVKQPDLNWENSEVRQALYEMVNWWLD-KGIDGFRIDAISHIKKKPGLPDLPNPKGLKYVPSFAGHMNQPGIMEYL 238 (555)
T ss_dssp ECSSCTTCCBBCTTCHHHHHHHHHHHHHHHH-HTCCEEEEESGGGSSCCTTCCCCC----CCSEECHHHHSSCTTHHHHH
T ss_pred ecccCccCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccccccccCCcccccccccccccccCcHHHHHHH
Confidence 6778889999999999999999999999998 9999999999998854 466
Q ss_pred HHHHH---hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-CCceeeeccchHHHHHHH--HcCchhhhhh
Q 018278 213 KVYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQAA--VQGELWRLKD 286 (358)
Q Consensus 213 ~~~~~---~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~l~~~--~~~~~~~~~~ 286 (358)
+++.+ ...+++++||+|... .+.+..|.... .+++.+|+|.+...+... ...+...+..
T Consensus 239 ~~~r~~v~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~ 303 (555)
T 2ze0_A 239 RELKEQTFARYDIMTVGEANGVT---------------VDEAEQWVGEENGVFNMIFQFEHLGLWERRADGSIDVRRLKR 303 (555)
T ss_dssp HHHHHHTGGGSSCEEEEECTTCC---------------TTTTHHHHCSSSCSCSEEECCTTCCCCCCCC--CCCHHHHHH
T ss_pred HHHHHHhhccCCeEEEeccCCCC---------------HHHHHHHhccccccccceeehHHHhhhhccccCCCCHHHHHH
Confidence 66643 233589999999531 23455676532 356777888754210000 0001111111
Q ss_pred cCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCc----chHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 287 SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~----~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
.+........ .....++|++|||++|+.+.++... ++.++|+++++|+||+|+||||||+|+.+..
T Consensus 304 ~~~~~~~~~~-~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~~~~l~t~pG~P~iy~G~E~G~~~~~ 373 (555)
T 2ze0_A 304 TLTKWQKGLE-NRGWNALFLENHDLPRSVSTWGNDRDYWAESAKALGALYFFMQGTPFIYQGQEIGMTNVR 373 (555)
T ss_dssp HHHHHHHHHT-TTCCBEECSCCTTSCCHHHHTSCSSSSHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCC
T ss_pred HHHHHHhhcc-CCCceeeeecCCCCcchhhhhCCchhhhHHHHHHHHHHHHhCCCceEEEeceecCcCCCC
Confidence 0000000000 1223468999999999888765332 2488999999999999999999999999853
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-58 Score=442.46 Aligned_cols=289 Identities=32% Similarity=0.548 Sum_probs=220.4
Q ss_pred CCceEEEeeecCCCCCCCCc-hHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCCCccccC---------CCCCCCCC
Q 018278 22 SPALLFQGFNWESSNKAGGW-YNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLY---------DLDASKYG 88 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~-~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---~~gY~~~d~~---------~id~~~~G 88 (358)
++.||||+|.|+.++ +|| |+||+++|+|||+||||+|||+||+++++ +|||+|.||+ +|+ |+||
T Consensus 8 ~~~viyq~f~w~~~~--~G~~~~gi~~~Ldyl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy~~lg~~~~~~~id-~~~G 84 (435)
T 1mxg_A 8 EGGVIMQAFYWDVPG--GGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVE-TRFG 84 (435)
T ss_dssp GTCCEEECCCTTCCC--SSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSS-CSSC
T ss_pred CCcEEEEEEEeccCC--CCCHHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCcCcccccccccccccCcCC-CCCC
Confidence 689999999999875 689 99999999999999999999999999875 5899999999 599 9999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCC--CCcc---eeeccCCCC-CCCCCCCCCcccCCCCccCCCCCCCCC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKD--GRGI---YCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGNDDT 162 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~--~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (358)
|++||++||++||++||+||+|+|+||++.+++. +... |..|....+ ..+..|... ... .+ ..+..
T Consensus 85 t~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~--~~----~~~~~ 156 (435)
T 1mxg_A 85 SKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDF--HPN--EL----HCCDE 156 (435)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGB--SSS--SS----CSCCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccccCCCcccCCCCCccccccCCCccCCCCccccccC--CCC--Cc----CccCC
Confidence 9999999999999999999999999999987631 1222 222322101 111122110 000 00 01111
Q ss_pred CCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCCCC
Q 018278 163 GEDFQPAPDIDHLNPRVQKEL----SDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDG 238 (358)
Q Consensus 163 ~~~~~~~~dln~~n~~v~~~l----~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~ 238 (358)
+ .+..+||||++||+||++| .+++++|++ +||||||+|+|++++.+||+++.++. +++++||+|...
T Consensus 157 g-~~~~~~dln~~np~V~~~l~~~~~~~~~~w~~-~gvDGfR~Da~~~i~~~f~~~~~~~~-~~~~vgE~~~~~------ 227 (435)
T 1mxg_A 157 G-TFGGFPDICHHKEWDQYWLWKSNESYAAYLRS-IGFDGWRFDYVKGYGAWVVRDWLNWW-GGWAVGEYWDTN------ 227 (435)
T ss_dssp C-CCTTSCBBCTTSHHHHHHHTSSTTSHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHH-CCCEEECCCCSC------
T ss_pred C-cccCccccCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEhhhhhhccHHHHHHHHHhc-CceEEEccccCC------
Confidence 1 2568999999999999665 689999998 99999999999999999999998765 578999999651
Q ss_pred CCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCC
Q 018278 239 KPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRL 317 (358)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~ 317 (358)
.+.+..|+...+ .++|||++...+..++.+ +...+..............|.+.++|++|||++|+..
T Consensus 228 ---------~~~~~~~~~~~~--~~~fd~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~- 295 (435)
T 1mxg_A 228 ---------VDALLSWAYESG--AKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWN- 295 (435)
T ss_dssp ---------HHHHHHHHHHHT--SEEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSC-
T ss_pred ---------hHHHHhhhccCC--CceeehHHHHHHHHHHhcCCHHHHHHHHhccccccccCHHHhhhhcccCCccchhh-
Confidence 345677876543 778999999999988854 3333333222111222335678899999999998641
Q ss_pred CCCCcchHHHHHHHHHcCCCeeeeecCccccC
Q 018278 318 WPFPSDKVMLGYAYILTHPGTPCIVISVTYPL 349 (358)
Q Consensus 318 ~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~ 349 (358)
.++|++++||+||+|+||||||+|.
T Consensus 296 -------~~~a~a~~lt~~G~P~iyyG~e~~~ 320 (435)
T 1mxg_A 296 -------KYPAYAFILTYEGQPVIFYRDFEEW 320 (435)
T ss_dssp -------HHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred -------HHHHHHHHHcCCCccEEEecccccc
Confidence 2789999999999999999999874
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=469.52 Aligned_cols=310 Identities=22% Similarity=0.313 Sum_probs=223.3
Q ss_pred CCceEEEeeecCCCCCC----------------------CCchHHHHhhhh--hHHHcCCCEEEeCCCCCC---------
Q 018278 22 SPALLFQGFNWESSNKA----------------------GGWYNSLKNSIP--DLSNAGITHVWLPPPSQS--------- 68 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~----------------------~G~~~gl~~~L~--yl~~LGv~~I~l~Pi~~~--------- 68 (358)
+++||||+|. +++.++ +|||+||+++|| |||+||||+|||+||+++
T Consensus 10 ~~~viYqI~p-~rF~d~~~~n~~~~~~~~~~~~~~~~~~gGdl~gi~~kLd~~yLk~LGv~aIwL~Pi~~~~~~~~~~~~ 88 (680)
T 1cyg_A 10 TSDVVYQIVV-DRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDAS 88 (680)
T ss_dssp TTCCEEEECG-GGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHHHHTSTTTTTTCCEEEECCCEEECCCCCSSSS
T ss_pred ccceEEEEec-ccccCCCCCcCCCCcccCCCccccccccCcCHHHHHhhcCHHHHHhCCCCEEEeCccccCccccccccC
Confidence 8899999996 443221 499999999999 999999999999999975
Q ss_pred --CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCC---cceeeccCCCC--CCCCCC
Q 018278 69 --VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR---GIYCIFEGGTS--DDRLDW 141 (358)
Q Consensus 69 --~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~---~~~~~~~~~~~--~~~~~~ 141 (358)
.++|||++.||++|| |+|||++||++||++||++||+||+|+|+||++..|.... .....+.++.. .++.+|
T Consensus 89 g~~~~~GY~~~Dy~~id-p~~Gt~~df~~Lv~~aH~~GIkVilD~V~NHts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (680)
T 1cyg_A 89 GSASYHGYWARDFKKPN-PFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDA 167 (680)
T ss_dssp CCCSTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCT
T ss_pred CCCCCCCcCchhccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccccCcchhhcCccccCcccccccCCCc
Confidence 257999999999999 9999999999999999999999999999999999874211 11111211100 011111
Q ss_pred CCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHH---h
Q 018278 142 GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME---N 218 (358)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~---~ 218 (358)
...+.......|.+.... ..+.+..+||||++||+||++|++++++|++ +||||||+|++++++.+||+++.+ +
T Consensus 168 ~~~f~~~~~~~~~~~~~~--~y~~~~~~pDLn~~np~Vr~~i~~~~~~Wl~-~GVDGfRlDa~~~i~~~f~~~~~~~v~~ 244 (680)
T 1cyg_A 168 NMYFHHNGGTTFSSLEDG--IYRNLFDLADLNHQNPVIDRYLKDAVKMWID-MGIDGIRMDAVKHMPFGWQKSLMDEIDN 244 (680)
T ss_dssp TCCBCCSCBCCCSSHHHH--HSSBSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCCEEEESCGGGSCSHHHHHHHHHHHH
T ss_pred hhceecCCCCCcCCCccc--cccCcCCCCccccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCCHHHHHHHHHHHhh
Confidence 111111111222211111 1223447999999999999999999999999 999999999999999999998854 3
Q ss_pred cCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhhhhhcCCCCCCcc
Q 018278 219 TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPPGFI 295 (358)
Q Consensus 219 ~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~~~~~~~~~~~~~ 295 (358)
.+|++++||.|.+.. ........|... . ...++||++...+..++.+ +...+...+.... ..
T Consensus 245 ~~~~~~vgE~~~~~~------------~~~~~~~~~~~~-~-~~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 309 (680)
T 1cyg_A 245 YRPVFTFGEWFLSEN------------EVDANNHYFANE-S-GMSLLDFRFGQKLRQVLRNNSDNWYGFNQMIQDTA-SA 309 (680)
T ss_dssp HCCCEEEECCCCCTT------------CCCHHHHHHHHH-S-SCEEBCHHHHHHHHHHHTTCSCCHHHHHHHHHHHH-HH
T ss_pred cCCcEEEccCCCCCc------------ccchhhhhhhcc-C-CCceECchHHHHHHHHHhcCCCCHHHHHHHHHHHH-hh
Confidence 467999999986411 001234445543 2 2467999999888888753 2333332211000 00
Q ss_pred CCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 296 GILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 296 ~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
...+...++|++|||++|+.+. ..+.++.++|++++|++||+|+||||||+|+.+.
T Consensus 310 ~~~~~~~~~fl~NHD~~R~~s~-~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~ 365 (680)
T 1cyg_A 310 YDEVLDQVTFIDNHDMDRFMID-GGDPRKVDMALAVLLTSRGVPNIYYGTEQYMTGN 365 (680)
T ss_dssp CTTGGGCEECSCCTTSCCSCCT-TCCTHHHHHHHHHHHHSSSEEEEETTGGGTCCCC
T ss_pred ccchhhceEEecCCCcchhccc-CCCHHHHHHHHHHHHhCCCCCEEEEeecccccCC
Confidence 1134567899999999999883 3355789999999999999999999999998754
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-58 Score=467.38 Aligned_cols=310 Identities=21% Similarity=0.311 Sum_probs=223.4
Q ss_pred CCCceEEEeeecCCCCC-------------C---------CCchHHHHhhhh--hHHHcCCCEEEeCCCCCC--------
Q 018278 21 TSPALLFQGFNWESSNK-------------A---------GGWYNSLKNSIP--DLSNAGITHVWLPPPSQS-------- 68 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~-------------~---------~G~~~gl~~~L~--yl~~LGv~~I~l~Pi~~~-------- 68 (358)
++++||||+|. +++.+ + +|||+||+++|| |||+||||+|||+||+++
T Consensus 12 ~~~~viYqi~~-~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk~LGvtaIwL~Pi~~~~~~~~~~~ 90 (683)
T 3bmv_A 12 YSTDVIYQIVT-DRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDS 90 (683)
T ss_dssp CTTCCEEECCG-GGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCCEEET
T ss_pred CccCcEEEEec-ccccCCCCCCCCCCcccCCCccccccccCcCHHHHHHhcCHHHHHHcCCCEEEeCccccCcccccccc
Confidence 48999999996 44322 1 499999999999 999999999999999984
Q ss_pred -----CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCC---cceeeccCCC--CCCC
Q 018278 69 -----VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR---GIYCIFEGGT--SDDR 138 (358)
Q Consensus 69 -----~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~---~~~~~~~~~~--~~~~ 138 (358)
.++|||++.||++|| |+|||++||++||++||++||+||+|+|+||++..|.... .....+.++. ..++
T Consensus 91 g~~g~~~~~GYd~~dy~~id-p~~Gt~~dfk~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~ 169 (683)
T 3bmv_A 91 TFGGSTSYHGYWARDFKRTN-PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYT 169 (683)
T ss_dssp TTEEECSTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECST
T ss_pred cccCCCCCCCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEEcccccccccccCcchhccCccccCCcccccCC
Confidence 367999999999999 9999999999999999999999999999999999874211 1111111110 0011
Q ss_pred CCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHH-
Q 018278 139 LDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME- 217 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~- 217 (358)
.+|...+.......|.+.... ..+.+..+||||++||+||++|++++++|++ +||||||+|++++++.+||+++.+
T Consensus 170 ~~~~~~f~~~~~~~w~~~~~~--~y~~~~~~pdLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~~~f~~~~~~~ 246 (683)
T 3bmv_A 170 NDTNGYFHHYGGTDFSSYEDG--IYRNLFDLADLNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHMPFGWQKNFMDS 246 (683)
T ss_dssp TCTTCCBCCSCBCCCSSHHHH--HHSBSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGSCHHHHHHHHHH
T ss_pred CCcccccccCCCCCcCCcccc--cccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCCHHHHHHHHHH
Confidence 111111111111222111000 1122346999999999999999999999999 999999999999999999998854
Q ss_pred --hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhhhhhcCCCCC
Q 018278 218 --NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPP 292 (358)
Q Consensus 218 --~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~~~~~~~~~~ 292 (358)
+.+|++++||.|.+.. ........|... .+ ..++||++...+...+.+ +...+...+....
T Consensus 247 v~~~~~~~~vgE~~~~~~------------~~~~~~~~~~~~-~~-~~~~df~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 312 (683)
T 3bmv_A 247 ILSYRPVFTFGEWFLGTN------------EIDVNNTYFANE-SG-MSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTA 312 (683)
T ss_dssp HHHHSCCEEEECCCCCTT------------CCCHHHHHHHHH-SS-SEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHH
T ss_pred HHhcCCceEEccccCCCc------------ccchhhhhhhcc-CC-CceECchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4467999999986421 001234455543 23 357999999988888753 2333332211000
Q ss_pred CccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 293 GFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 293 ~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
. ....+...++|++|||++|+. ...+.++.++|++++|++||+|+||||||+|+.+.
T Consensus 313 ~-~~~~~~~~~~fl~NHD~~R~~--~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~ 369 (683)
T 3bmv_A 313 S-DYNFINDMVTFIDNHDMDRFY--NGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGN 369 (683)
T ss_dssp H-HCTTGGGCEECSCCSSSCCSC--CSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCC
T ss_pred H-hccchhhceeeccCCCCcccc--cCCCHHHHHHHHHHHHhCCCCCEEEeeeeecccCC
Confidence 0 011345678999999999988 44456789999999999999999999999999754
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-58 Score=466.40 Aligned_cols=312 Identities=23% Similarity=0.347 Sum_probs=223.7
Q ss_pred CCCceEEEeeecCCCCC-------------C---------CCchHHHHhhhh--hHHHcCCCEEEeCCCCCC--------
Q 018278 21 TSPALLFQGFNWESSNK-------------A---------GGWYNSLKNSIP--DLSNAGITHVWLPPPSQS-------- 68 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~-------------~---------~G~~~gl~~~L~--yl~~LGv~~I~l~Pi~~~-------- 68 (358)
++++||||+|. +++.+ + +|||+||+++|| |||+||||+|||+||+++
T Consensus 12 ~~~~viYqi~~-~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk~LGvt~IwL~Pi~~~~~~~~~~~ 90 (686)
T 1d3c_A 12 FSTDVIYQIFT-DRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYS 90 (686)
T ss_dssp CTTCCEEEECG-GGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHHHHTTTTGGGTCCEEEECCCEEECCCCEESS
T ss_pred CccCcEEEEec-ccccCCCCCcCCCCcccCCCccccccccCcCHHHHHHhcCHHHHHhcCCCEEEeCCcccCCccccccc
Confidence 38899999996 43322 1 499999999999 999999999999999984
Q ss_pred ----CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCC---CcceeeccCCCC--CCCC
Q 018278 69 ----VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG---RGIYCIFEGGTS--DDRL 139 (358)
Q Consensus 69 ----~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~---~~~~~~~~~~~~--~~~~ 139 (358)
.++|||++.||++|| |+|||++||++||++||++||+||+|+|+||++..|... ......+.++.. ..+.
T Consensus 91 g~~~~~~~GYd~~dy~~id-p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (686)
T 1d3c_A 91 GVNNTAYHGYWARDFKKTN-PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTN 169 (686)
T ss_dssp SCEECCTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTT
T ss_pred CccCCCCCCCCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeCcCccccccccccchhhcCccccCCcccccCCC
Confidence 357999999999999 999999999999999999999999999999999987421 111111211100 0011
Q ss_pred CCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHH--
Q 018278 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME-- 217 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~-- 217 (358)
++...+.......|.+.... ..+.+..+||||++||+||++|++++++|++ +||||||+|++++++.+||+++.+
T Consensus 170 ~~~~~f~~~~~~~~~~~~~~--~y~~~~~~pDLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~~~f~~~~~~~v 246 (686)
T 1d3c_A 170 DTQNLFHHNGGTDFSTTENG--IYKNLYDLADLNHNNSTVDVYLKDAIKMWLD-LGIDGIRMNAVKHMPFGWQKSFMAAV 246 (686)
T ss_dssp CTTCCBCCSCBCCSSSHHHH--HHSBBTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHH
T ss_pred CccCceecCCCCCcCCCccc--cccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCCHHHHHHHHHHH
Confidence 11111111111222111000 1122346999999999999999999999999 999999999999999999999854
Q ss_pred -hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhhhhhcCCCCCC
Q 018278 218 -NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPPG 293 (358)
Q Consensus 218 -~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~~~~~~~~~~~ 293 (358)
+.+|++++||.|.+.. ........|... .+ ..++||++...+...+.+ +...+...+....
T Consensus 247 ~~~~~~~~vgE~~~~~~------------~~~~~~~~~~~~-~~-~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~- 311 (686)
T 1d3c_A 247 NNYKPVFTFGQWFLGVN------------EVSPENHKFANE-SG-MSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSA- 311 (686)
T ss_dssp HTTSCCEEEECCCCCTT------------CCCHHHHHHHHH-SS-SEEBCHHHHHHHHHHHTTCSSCHHHHHHHHHHHH-
T ss_pred HhcCCceEEeccccCCc------------ccchhhhhhhcc-CC-CceeCcHHHHHHHHHHhcCCCCHHHHHHHHHHHH-
Confidence 4567899999986411 001234455543 22 357999999888888753 2333332211000
Q ss_pred ccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 294 FIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 294 ~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
.....+...++|++|||++|+.+ ...+.++.++|++++|++||+|+||||||+|+.+..
T Consensus 312 ~~~~~~~~~~~fl~nHD~~R~~~-~~~~~~~~~~a~a~llt~pG~P~IyyG~E~g~~~~~ 370 (686)
T 1d3c_A 312 ADYAQVDDQVTFIDNHDMERFHA-SNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGGT 370 (686)
T ss_dssp HHCTTGGGCEECSCCTTSCCSSC-TTSCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCS
T ss_pred hhccccccceeeccCCCcccccc-ccCCHHHHHHHHHHHHhCCCCcEEEecceecccCCC
Confidence 00113456789999999999988 344557899999999999999999999999997543
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-58 Score=447.02 Aligned_cols=298 Identities=22% Similarity=0.327 Sum_probs=220.8
Q ss_pred CCCCCceEEEeeecCCCCCCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCCCCC------CCCCccccCCCCCCCCCCHH
Q 018278 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSVAP------QGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 19 ~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~~~------~gY~~~d~~~id~~~~Gt~~ 91 (358)
.|.+++||+|.|.|+ |+||+++ |+|||+||||+|||+||+++++. |||++.| |+|| |+|||++
T Consensus 6 ~~~~~~~i~~~F~w~--------~~gi~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~d-y~id-p~~Gt~~ 75 (471)
T 1jae_A 6 FASGRNSIVHLFEWK--------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVS-YIIN-TRSGDES 75 (471)
T ss_dssp CCTTCEEEEEETTCC--------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCC-SCSE-ETTEEHH
T ss_pred CCCCCCeEEEEecCC--------HHHHHHHHHHHHHHcCCCEEEeCccccccCCCCCCccccccccc-cccc-CCCCCHH
Confidence 356889999999985 9999999 69999999999999999998753 6999999 5999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCC-CCCcceeeccCC-CCCCCCCCCCCcccCCC--CccCCCCCCCCCCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERK-DGRGIYCIFEGG-TSDDRLDWGPSFICRGD--KEYSDGQGNDDTGEDFQ 167 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 167 (358)
||++||++||++||+||+|+|+||++.+|. ...+.++.+... .+..+..|. .+.... +.|.+. ....++++.
T Consensus 76 d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~f~~~~~i~~~~~~--~~~~~~~~~ 151 (471)
T 1jae_A 76 AFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSG--DFHSPCEVNNYQDA--DNVRNCELV 151 (471)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGG--GBCCCCBCCCTTCH--HHHHHSBBT
T ss_pred HHHHHHHHHHHCCCEEEEEEecccccCCCCcCCCCCccCccCCcCCCCCCCHh--HcCCCCCccCCCCh--hhccccccC
Confidence 999999999999999999999999999861 011122211000 000111111 000100 222221 123456678
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcC-----------C-CeEEEeccCCCCCC
Q 018278 168 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS-----------P-DFAVGEKWDSLSYG 235 (358)
Q Consensus 168 ~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~-----------p-~~~~gE~~~~~~~~ 235 (358)
.+||||++||+||++|++++++|++ +||||||+|+|++++++||+++.++.+ | ++++||+|....
T Consensus 152 ~~pdLn~~np~V~~~i~~~~~~w~~-~gvDGfRlDa~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~-- 228 (471)
T 1jae_A 152 GLRDLNQGSDYVRGVLIDYMNHMID-LGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGG-- 228 (471)
T ss_dssp TBCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSS--
T ss_pred CCCccCcCCHHHHHHHHHHHHHHHH-cCCCEEEeechhcCCHHHHHHHHHHHhhhccccccccCCCceEEEeeecCCC--
Confidence 9999999999999999999999996 999999999999999999999866532 3 689999996521
Q ss_pred CCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC--chhhhhhcCCCCCCccCCCCCceeecccCCCCCc
Q 018278 236 PDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG--ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 313 (358)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r 313 (358)
... ....| .++..+++|++...+..++.+ +...+.+.... .....+.+.++|++|||++|
T Consensus 229 -----~~~------~~~~y----~~~~~~~~f~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~fl~nHD~~R 290 (471)
T 1jae_A 229 -----EAI------SKNEY----TGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGPE---WGLLEGLDAVVFVDNHDNQR 290 (471)
T ss_dssp -----SSC------CGGGT----TTSSEEECHHHHHHHHHHHTTTSCGGGGGGCSGG---GTCCCGGGEEECSCCTTHHH
T ss_pred -----ccc------chhhh----cCCCceeccHHHHHHHHHHhCCCcHHHHHHhhhh---cCCCChhheeEEeecCCCCC
Confidence 000 00012 246678999999999888854 44444443110 11123567899999999999
Q ss_pred Cc--CCCC-CCcchHHHHHHHHHcCC-CeeeeecCccccCCC
Q 018278 314 TQ--RLWP-FPSDKVMLGYAYILTHP-GTPCIVISVTYPLFH 351 (358)
Q Consensus 314 ~~--~~~~-~~~~~~~~a~a~l~~~p-G~P~IyyGdE~G~~~ 351 (358)
+. +... .+.++.++|+|++||+| |+|+||||||+|+.+
T Consensus 291 ~~g~~~~~~~~~~~~~la~a~llt~pyG~P~iy~G~E~g~~~ 332 (471)
T 1jae_A 291 TGGSQILTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFTDND 332 (471)
T ss_dssp HSCTTCCCTTSHHHHHHHHHHHHHSCSSEEEEEECBCCSSTT
T ss_pred CCCCcccccCCHHHHHHHHHHHHhCcCCceEEEecceecCCC
Confidence 86 4443 34568999999999999 999999999999864
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-57 Score=441.32 Aligned_cols=292 Identities=16% Similarity=0.231 Sum_probs=220.7
Q ss_pred hhhcCCCCCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-------CCCCCccccCCCCCCC
Q 018278 14 LAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-------PQGYMPGRLYDLDASK 86 (358)
Q Consensus 14 ~~~~~~~~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-------~~gY~~~d~~~id~~~ 86 (358)
+.-.|.|.++.||||+|. ++..+ +|||+||+++|+|||+||||+|||+||++++. ++||++.||++|+ |+
T Consensus 3 ~~~~~~w~~~~viYei~~-~~f~~-~G~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~-~~ 79 (449)
T 3dhu_A 3 LRDTQTQLRNEMIYSVFV-RNYSE-AGNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGIN-PE 79 (449)
T ss_dssp ----CGGGGGCCEEEECH-HHHSS-SCSHHHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCC-GG
T ss_pred CCCCchhhhcCEEEEEEh-hhhCC-CCCHHHHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccC-cc
Confidence 345799999999999996 54444 69999999999999999999999999998764 3689999999999 99
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCC--CcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCC
Q 018278 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG--RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGE 164 (358)
Q Consensus 87 ~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (358)
|||++||++||++||++||+||+|+|+||++.+++.. ...|+.... ...+. ....
T Consensus 80 ~Gt~~~~~~lv~~~h~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~-----------------~~~~~------~~~~ 136 (449)
T 3dhu_A 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVLATEHPEWFYHDA-----------------DGQLT------NKVG 136 (449)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEEECCSEECTTSHHHHHCGGGBCBCT-----------------TSCBC------CSST
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEccCcCcCccchhhcCccceEECC-----------------CCCcC------CCCC
Confidence 9999999999999999999999999999999876410 111221110 00000 0112
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC-CeEEEeccCCCCCCCCCCC
Q 018278 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGEKWDSLSYGPDGKP 240 (358)
Q Consensus 165 ~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p-~~~~gE~~~~~~~~~~~~~ 240 (358)
.|..++|||++||+||+++++++++|++ . |||||+|+|++++.+||+++. ++.+| ++++||.|..
T Consensus 137 ~w~~~~dLn~~np~Vr~~l~~~l~~w~~-~-vDGfRlDaa~~~~~~f~~~~~~~~~~~~p~~~~~gE~~~~--------- 205 (449)
T 3dhu_A 137 DWSDVKDLDYGHHELWQYQIDTLLYWSQ-F-VDGYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAGS--------- 205 (449)
T ss_dssp TCTTCEEBCTTSHHHHHHHHHHHHHHTT-T-CSEEEETTGGGSCHHHHHHHHHHHHHHSTTCEEEECCCCH---------
T ss_pred CCCCCCccCCCCHHHHHHHHHHHHHHHH-h-CCEEEEEChhhCCHHHHHHHHHHHHhhCCCeEEEeccCCc---------
Confidence 3457999999999999999999999999 5 999999999999999999984 45567 8899999853
Q ss_pred CCCCCCchhhHHHHHHhc-----------CCceeeeccchHHHHHHHHcCc--hhhhhhcCCCCCCccCCCCCceeeccc
Q 018278 241 DANQDGHRGALKDWVQAA-----------GGAVAAFDFTTKGILQAAVQGE--LWRLKDSNGKPPGFIGILPQNAVTFID 307 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~df~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~f~~ 307 (358)
...+++... ..++.+++|++...+...+.+. ...+.+.+...... ...+...++|++
T Consensus 206 ---------~~~~~~~~~g~~~~~~~~l~~~fd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~fl~ 275 (449)
T 3dhu_A 206 ---------GFIEELRSQGYTGLSDSELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDLLQRQDAT-FPGNYVKMRFLE 275 (449)
T ss_dssp ---------HHHHHHHHTTCCCCCHHHHHTTCSEEEGGGTHHHHHHHHTTSSCHHHHHHHHHHHHTT-SCTTCEEEECSC
T ss_pred ---------hHHHHHHhcCccccccchhhhccCccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh-cCCchhheeecc
Confidence 111222211 2456778888888876665442 33333221110011 112345689999
Q ss_pred CCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 308 NHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 308 nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
|||++|+.+.+. +.++.++|++++|++||+|+||||+|+|+.+..
T Consensus 276 NHD~~R~~~~~~-~~~~~k~a~a~~lt~pG~P~IyyG~E~g~~~~~ 320 (449)
T 3dhu_A 276 NHDNARMMSLMH-SKAEAVNNLTWIFMQRGIPLIYNGQEFLAEHQP 320 (449)
T ss_dssp CTTSCCHHHHCC-SHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCC
T ss_pred cCCccchhhhcC-CHHHHHHHHHHHHhCCCCcEEEccEecccCCCC
Confidence 999999988776 567889999999999999999999999998654
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-57 Score=437.70 Aligned_cols=294 Identities=21% Similarity=0.311 Sum_probs=214.5
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhh-hhhHHHcCCCEEEeCCCCCCCCC----CCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSVAP----QGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~-L~yl~~LGv~~I~l~Pi~~~~~~----~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
.+||+|.|.|+ |+||+++ |||||+||||+||||||+++++. |||++.| |+|| |+|||++||++||
T Consensus 2 ~~~~~q~F~w~--------~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~-y~id-p~~Gt~~dfk~Lv 71 (448)
T 1g94_A 2 PTTFVHLFEWN--------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVS-YELQ-SRGGNRAQFIDMV 71 (448)
T ss_dssp CCCEEEETTCC--------HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSC-SCSC-BTTBCHHHHHHHH
T ss_pred CCEEEEEecCc--------HHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccc-cccC-CCCCCHHHHHHHH
Confidence 57999999865 9999998 59999999999999999998753 6999997 6999 9999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCC--CcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 018278 98 QAFRQKGIKCLADMVINHRTAERKDG--RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~NH~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (358)
++||++||+||+|+|+||++.+|+.. ...|..+.- .+..+..|..... .....|.+... ....+.+..+||||++
T Consensus 72 ~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~-~~g~~~~~~~~-~~~~~~~~~~~dln~~ 148 (448)
T 1g94_A 72 NRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSF-PIYSPQDFHESCT-INNSDYGNDRY-RVQNCELVGLADLDTA 148 (448)
T ss_dssp HHHHHTTCEEEEEEECSEECSSCEEBTTSCEEBTTBC-SSCCGGGBCCCCB-CCTTHHHHCHH-HHHHSBSTTCEEBCTT
T ss_pred HHHHHCCCEEEEEEeeccccCCCCCCCCCCCCccccC-CCCCHHHcCCCCC-cCccccCCccc-ccceeeccCCCCcCCC
Confidence 99999999999999999999987311 011211000 0111112211000 00001211000 0112335789999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHH
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 254 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (358)
||+||++|++++++|++ +||||||+|+|++++.+||+++.++.++ ++++||+|.... + ......|
T Consensus 149 np~Vr~~i~~~~~~w~~-~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~vgE~~~~~~-------~------~~~~~~y 214 (448)
T 1g94_A 149 SNYVQNTIAAYINDLQA-IGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGG-------E------AVGASEY 214 (448)
T ss_dssp SHHHHHHHHHHHHHHHH-HTCCEEEEETGGGSCHHHHHHHHHTSCSCCEEEECCCCSSC-------C------SSCGGGG
T ss_pred CHHHHHHHHHHHHHHHh-cCCCEEeecccccCCHHHHHHHHHHhccCCeEEEEeecCCC-------C------cccHHhh
Confidence 99999999999999996 9999999999999999999999998875 899999996421 0 1112233
Q ss_pred HHhcCCceeeeccchHHHHHHHHc-CchhhhhhcCCCCCCccCCCCCceeecccCCCCCcC--c---CCCCCCcchHHHH
Q 018278 255 VQAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGST--Q---RLWPFPSDKVMLG 328 (358)
Q Consensus 255 ~~~~~~~~~~~df~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~--~---~~~~~~~~~~~~a 328 (358)
.. ...+++|++...+..++. ++...+.+... ......+...++|++|||+.|+ . +....+.++.++|
T Consensus 215 ~~----~~~~~~f~~~~~l~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~f~~nHD~~r~~~~~g~~l~~~~~~~~~la 287 (448)
T 1g94_A 215 LS----TGLVTEFKYSTELGNTFRNGSLAWLSNFGE---GWGFMPSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLA 287 (448)
T ss_dssp GG----GSEEECHHHHHHHHHHHHHSCGGGGGGTTG---GGTCCCGGGEEECSCCTTGGGTSSCCTTSCCGGGTHHHHHH
T ss_pred cC----CCceeeccchhhHHHHhcCCCHHHHHHhhh---hcCCCChhHceEEecCCCCCCCCCCcccccccCCHHHHHHH
Confidence 32 246788888777777774 44555544311 1112346788999999999998 3 2222245688999
Q ss_pred HHHHHcCC-CeeeeecCccccCC
Q 018278 329 YAYILTHP-GTPCIVISVTYPLF 350 (358)
Q Consensus 329 ~a~l~~~p-G~P~IyyGdE~G~~ 350 (358)
++++||+| |+|+||||||+|+.
T Consensus 288 ~a~~l~~~~G~P~iy~G~E~G~~ 310 (448)
T 1g94_A 288 NVFMLAYPYGYPKVMSSYDFHGD 310 (448)
T ss_dssp HHHHHHSCSSEEEEEECBCCTTC
T ss_pred HHHHHhCCCCeeEEEechhcccc
Confidence 99999999 99999999999986
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-57 Score=454.19 Aligned_cols=287 Identities=17% Similarity=0.221 Sum_probs=205.2
Q ss_pred CCchHHHHhhhhhHHH-cCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcC--C--EEEEEeec
Q 018278 39 GGWYNSLKNSIPDLSN-AGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKG--I--KCLADMVI 113 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~-LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~G--i--~VilD~V~ 113 (358)
+|||+||+++|+|||+ ||||+||||||++++++|||++.||++|+ |+|||++||++||++||++| | +||||+|+
T Consensus 187 gG~~~gi~~~LdyLk~~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id-~~~Gt~~dfk~LV~~~H~~G~~I~~~VIlD~V~ 265 (637)
T 1ji1_A 187 GGDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVD-PAFGDNSTLQTLINDIHSTANGPKGYLILDGVF 265 (637)
T ss_dssp CCCHHHHHHTHHHHHTTTCCCEEEESCCEECSSSSCCSCSEEEEEC-TTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECC
T ss_pred CcCHHHHHHhHHHHHhccCCCEEEECCCccCCCCCCcCccchhhhc-cccCCHHHHHHHHHHHHhCCCCccceEEEEECc
Confidence 4999999999999999 99999999999999999999999999999 99999999999999999999 9 99999999
Q ss_pred ccccccCCCCCcceeeccC-C----CCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHH---
Q 018278 114 NHRTAERKDGRGIYCIFEG-G----TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP--RVQKEL--- 183 (358)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~--~v~~~l--- 183 (358)
||++.+|++.... ..|.. + ...++.+|. .+.+....+..++....+|+||++|| +||++|
T Consensus 266 NH~~~~~~~f~~~-~~f~~~g~y~~~~~py~~~y---------~~~~~~~~~~~~~g~~~~pdln~~~p~~~Vr~~i~~~ 335 (637)
T 1ji1_A 266 NHTGDSHPWFDKY-NNFSSQGAYESQSSPWYNYY---------TFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNN 335 (637)
T ss_dssp SBCCTTSTTTCTT-CCSSSCCTTTCTTCTTGGGB---------CEEETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTS
T ss_pred ccCCCCcHHHhhh-hccCccccccCCCCcccccc---------ccCCCCCCcccccCCCCcccccccCChHHHHHHHHhh
Confidence 9999988621110 00100 0 000111111 11111112222233456899999999 999999
Q ss_pred -HHHHHHHHHh-cCCCeEeeccCCCC---C--------HHHHHHHHH---hcCC-CeEEEeccCCCCCCCCCCCCCCCCC
Q 018278 184 -SDWMNWLKTE-IGFDGWRFDFVKGY---A--------PSITKVYME---NTSP-DFAVGEKWDSLSYGPDGKPDANQDG 246 (358)
Q Consensus 184 -~~~~~~w~~~-~gvDGfR~D~a~~i---~--------~~~~~~~~~---~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~ 246 (358)
++++++|+++ +||||||+|+|+++ + .+||+++.+ +.+| +++|||.|....
T Consensus 336 ~~~~~~~Wl~~~~gvDGfR~Da~~~l~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~ligE~~~~~~------------- 402 (637)
T 1ji1_A 336 SNSVAKTYLNPPYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNAN------------- 402 (637)
T ss_dssp TTSHHHHHHSTTTCCCEEEETTGGGCBSTTCCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCG-------------
T ss_pred hHHHHHHHHhCcCCCCEEEEEchhhhhccCccccccchHHHHHHHHHHHHhhCCCeEEEEEecCCch-------------
Confidence 9999999998 99999999999999 6 789998844 4566 899999996521
Q ss_pred chhhHHHHHHhcCCceeeecc-chHHHHHHHHcC----------chhhhhhcCCC-CCCccCCCCCceeecccCCCCCcC
Q 018278 247 HRGALKDWVQAAGGAVAAFDF-TTKGILQAAVQG----------ELWRLKDSNGK-PPGFIGILPQNAVTFIDNHDTGST 314 (358)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~df-~~~~~l~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~v~f~~nHD~~r~ 314 (358)
.|+....+++..++| .++..+...+.+ +...+...+.. ........+...++|++|||+.|+
T Consensus 403 ------~~~~~g~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~nHD~~rl 476 (637)
T 1ji1_A 403 ------PWTAQGNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQSMMNFLSNHDITRF 476 (637)
T ss_dssp ------GGTTTSSSCSEEBCTTTTHHHHHHHHTSBCTTSCBCCCCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCH
T ss_pred ------hhhccCCccceEEecHHHHHHHHHHhcCCccccccCCCCHHHHHHHHHHHHHhccccchhhceecccCCchhhH
Confidence 111111234444554 344444433322 11111111000 000000012346899999999999
Q ss_pred cCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 315 QRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 315 ~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
.+.+..+.++.++|++++|++||+|+||||||+|+.+..|+
T Consensus 477 ~~~~~g~~~~~~~a~a~ll~~pG~P~iy~GdE~G~~~~~d~ 517 (637)
T 1ji1_A 477 ATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADP 517 (637)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCCSTT
T ss_pred hhhcCCcHHHHHHHHHHHHhCCCCceEEeeeccccCCCCCC
Confidence 88876566789999999999999999999999999876543
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-57 Score=451.81 Aligned_cols=311 Identities=17% Similarity=0.188 Sum_probs=228.1
Q ss_pred cCCCCCC--ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC---CCCCCCccccCCCCCCCCCCHH
Q 018278 17 FLPFTSP--ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 17 ~~~~~~~--~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~~ 91 (358)
.|.|.++ .|+||++. ++. +|||+||+++|+|||+||||+|||+||++++ ++|||+|.||++|+ |+|||++
T Consensus 82 ~~~W~~~~~~viY~i~~-~~F---~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vd-p~~Gt~~ 156 (644)
T 3czg_A 82 HAGWFGQPHMLGYSAYA-DRF---AGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVE-PSLGSND 156 (644)
T ss_dssp CTTGGGSTTCCEEEECH-HHH---HSSHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBC-GGGCCHH
T ss_pred CCccccCCCcEEEEEec-hhh---CCCHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccC-cccCCHH
Confidence 5789877 79999995 555 3899999999999999999999999999987 47999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCC---------CCcceeeccCCCCCCCCCCC----CCcc--cCCCCccCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDWG----PSFI--CRGDKEYSDG 156 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~---------~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~ 156 (358)
||++||++||++||+||+|+|+||+|.+|++ +..+|+.+.+... .+.+|. ..+. ....+.+.++
T Consensus 157 df~~Lv~~aH~~GI~VilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~-~p~~~~~~~~~~f~~~~~~~~~~~~~ 235 (644)
T 3czg_A 157 DLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRT-VPDRYEATLGQVFPHTAPGNFTWVDD 235 (644)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSH-HHHHHHHHCCCC------CCEEEETT
T ss_pred HHHHHHHHHHHCCCEEEEEEecCCcccchhhHHHHhcCCCcccCceecCCCCC-CCcchhhcccccCCCCCCCCccccCC
Confidence 9999999999999999999999999998852 1223444332110 000110 0000 0112233344
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-------------HHHHHHH---HHhcC
Q 018278 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVY---MENTS 220 (358)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~---~~~~~ 220 (358)
++++++..+...+||||++||+|+++|++++++|++ +||||||+|+++++. .+||+++ +++.+
T Consensus 236 ~~~~~~~~f~~~~pdLN~~np~V~~~i~~~~~~wl~-~GvDGfRlDa~~~i~~~~~~~~~n~p~~~~~l~~~r~~~~~~~ 314 (644)
T 3czg_A 236 TAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLAN-LGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVA 314 (644)
T ss_dssp TTEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTEEEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCceEecccccCCCcCCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecccccccccCCcccCcHHHHHHHHHHHHHHHHhC
Confidence 456667778899999999999999999999999996 999999999999984 4678776 44556
Q ss_pred C-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc----CCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCc
Q 018278 221 P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA----GGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGF 294 (358)
Q Consensus 221 p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 294 (358)
| ++++||+|.. ...+..|++.. .+...+|+|++...+..++ .++...+..........
T Consensus 315 p~~~ligE~~~~----------------~~~~~~y~~~~~~~~~~~~~~ynf~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 378 (644)
T 3czg_A 315 PAVVMKAEAIVP----------------MTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRGDILHNVIAHSPPL 378 (644)
T ss_dssp TTCEEEEECCSC----------------GGGSGGGGCCGGGTTSSCSEEECHHHHHHHHHHHHHTCTHHHHHHHHTCCCC
T ss_pred CCeEEEEEecCC----------------HHHHHHhhCCCcccccccceeechHHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 6 8999999954 23344565432 3577889999877665554 45444444333221111
Q ss_pred cCCCCCceeecccCCCCC--------------------cCcCCC---------------------------------C--
Q 018278 295 IGILPQNAVTFIDNHDTG--------------------STQRLW---------------------------------P-- 319 (358)
Q Consensus 295 ~~~~~~~~v~f~~nHD~~--------------------r~~~~~---------------------------------~-- 319 (358)
..+...++|++|||+- |..+.+ +
T Consensus 379 --~~~~~~~nfl~nHD~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~g~~~~s~~~G~~y~~N~t~d~Ri~g~las~~g~~ 456 (644)
T 3czg_A 379 --PRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAALAGIQ 456 (644)
T ss_dssp --CTTCEEEEESCCSSCBCGGGGHHHHTCCSSSCCCCHHHHHHHHTTCSTTCCCCCEEC-----CCCCEECCHHHHHTHH
T ss_pred --CCCCeeeEEeccCcccccccchhhhhhccccchhhHHHHHHhhcCCCCcccccCcccccCCccccccccccccccchh
Confidence 1235678999999962 211100 0
Q ss_pred -----CC-------cchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 320 -----FP-------SDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 320 -----~~-------~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
.+ .++.++|++++|++||+|+||||||+|+.+.
T Consensus 457 ~a~~~~d~~~~~~~~~r~~la~a~llt~pG~P~IY~GdE~G~~~~ 501 (644)
T 3czg_A 457 AAQEAGDAAALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMVND 501 (644)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTSSEEEEEETTGGGTCCCC
T ss_pred hhhccccchhhhhHHHHHHHHHHHHHHcCCcceEEcchhhcCCCC
Confidence 00 2467899999999999999999999999875
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=440.26 Aligned_cols=309 Identities=17% Similarity=0.195 Sum_probs=225.6
Q ss_pred cCCCCCC--ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC---CCCCCCccccCCCCCCCCCCHH
Q 018278 17 FLPFTSP--ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 17 ~~~~~~~--~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~~ 91 (358)
.|.|.+. .|+||++. ++. +|||+||+++|+|||+||||+|||+||++++ ++|||+|.||++|| |+|||++
T Consensus 89 ~~~W~~~~~~viY~~~~-~~f---~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vd-p~~Gt~~ 163 (628)
T 1g5a_A 89 NPDWILSNKQVGGVCYV-DLF---AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVN-PALGTIG 163 (628)
T ss_dssp CGGGGGCTTCCEEEECH-HHH---HSSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBC-TTTCCHH
T ss_pred CcccccCCCcEEEEEch-hhh---CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcC-ccCCCHH
Confidence 4678877 69999995 554 4899999999999999999999999999987 47999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCC---------CCcceeeccCCCCCCCCCCCC----Ccc--cCCCCccCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDWGP----SFI--CRGDKEYSDG 156 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~ 156 (358)
||++||++||++||+||+|+|+||+|.+|++ +..+|+.+.+... .+..|.. .+. ....+.+...
T Consensus 164 d~~~Lv~~ah~~GI~VilD~V~NH~s~~~~wf~~~~~g~~~y~d~y~~~~~~~-~P~~~~~~~~~~f~~~~~~~~~~~~~ 242 (628)
T 1g5a_A 164 DLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRR-MPDQYDRTLREIFPDQHPGGFSQLED 242 (628)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSH-HHHHHTTTCCCSSTTTCSTTEEECTT
T ss_pred HHHHHHHHHHHCCCEEEEEEecCcccccchhHHHHhcCCCccccccccCCCCC-CcccccccccccCCCCCCCccccCCC
Confidence 9999999999999999999999999998852 2234444432110 0001100 000 0011122222
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-------------HHHHHHH---HHhcC
Q 018278 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVY---MENTS 220 (358)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~---~~~~~ 220 (358)
+.+....+...+||||++||+|+++|++++++|++ +||||||+|+|+++. .++|+++ +++.+
T Consensus 243 -~~~~~~~f~~~~pdLN~~np~V~~~i~~~l~~w~~-~GvDGfRlDa~~~i~k~~g~~~~~~p~~~~~~~~~r~~~~~~~ 320 (628)
T 1g5a_A 243 -GRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLAN-LGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAA 320 (628)
T ss_dssp -SCEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCSEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred -CCEEeccCCCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecccccccccCccccCcHHHHHHHHHHHHHHHHhC
Confidence 34555667788999999999999999999999996 999999999999884 3677776 45556
Q ss_pred C-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCC
Q 018278 221 P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGIL 298 (358)
Q Consensus 221 p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 298 (358)
| ++++||+|.. .+.+..|++. +++...|+|++...+..++ .++...+........... .
T Consensus 321 p~~~~igE~~~~----------------~~~~~~y~~~-~~~~~~y~f~l~~~~~~~~~~~~~~~l~~~l~~~~~~~--~ 381 (628)
T 1g5a_A 321 PAVFFKSEAIVH----------------PDQVVQYIGQ-DECQIGYNPLQMALLWNTLATREVNLLHQALTYRHNLP--E 381 (628)
T ss_dssp TTCEEEECCCSC----------------HHHHGGGBST-TSBSEEECHHHHHHHHHHHHHCCCHHHHHHHHHSCCCC--T
T ss_pred CCeEEEEEecCC----------------HHHHHHhhCC-CCcceeecHHHHHHHHHhhccCCHHHHHHHHHHhhccc--C
Confidence 7 8999999953 4556667664 4578899999887766654 444444433322111111 1
Q ss_pred CCceeecccCCCCC--------------------cCcCCC---------------C------------------------
Q 018278 299 PQNAVTFIDNHDTG--------------------STQRLW---------------P------------------------ 319 (358)
Q Consensus 299 ~~~~v~f~~nHD~~--------------------r~~~~~---------------~------------------------ 319 (358)
....++|++|||+- |..+.+ .
T Consensus 382 ~~~~~nfl~nHD~i~~~~~~~~~~~~g~~~~~~~r~l~~~~~g~~~~s~~~g~~~~~n~d~~d~Ri~~~~as~~g~~~~~ 461 (628)
T 1g5a_A 382 HTAWVNYVRSHDDIGWTFADEDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDD 461 (628)
T ss_dssp TCEEEEESCCSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEECCCTTTCCCEEECCHHHHHTGGGTC
T ss_pred CCeeEeehhccccccccccchhhhhccccchhHHHHHHHHhcCccccccccccccccCccchhhhhccccccccccccch
Confidence 23568999999962 210000 0
Q ss_pred -CCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 320 -FPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 320 -~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
...++.++|++++|++||+|+||||||+|+.+.
T Consensus 462 ~~~~~~~~la~a~llt~pG~P~IY~G~EiG~~~~ 495 (628)
T 1g5a_A 462 PHAVDRIKLLYSIALSTGGLPLIYLGDEVGTLND 495 (628)
T ss_dssp TTHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCC
T ss_pred hhHHHHHHHHHHHHHhCCCCcEEEecccccCCCC
Confidence 002467899999999999999999999999875
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-55 Score=437.77 Aligned_cols=312 Identities=15% Similarity=0.160 Sum_probs=233.6
Q ss_pred hcCCCCCCc--eEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC---CCCCCCccccCCCCCCCCCCH
Q 018278 16 IFLPFTSPA--LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 16 ~~~~~~~~~--v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~ 90 (358)
..|.|.+++ |+||++. ++. +|||+||+++|+|||+||||+|||+|+++++ +++||+|.||++|+ |+|||+
T Consensus 86 ~~~~W~~~~~~viY~~~~-~~f---~G~~~gl~~~LdyL~~lGv~~v~l~P~~~~~~~~~~~GY~~~dy~~i~-~~~Gt~ 160 (655)
T 3ucq_A 86 LRPDWLQRPEMVGYVAYT-DRF---AGTLKGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVR-PDLGTM 160 (655)
T ss_dssp HCTTGGGSTTCCEEEECH-HHH---HSSHHHHHTTHHHHHHTTCCEEEECCCEEECSSCCGGGTSEEEEEEEC-GGGCCH
T ss_pred cCCCcccCCceEEEEEeh-hhh---CCCHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCCCcCCcCcCccC-ccCCCH
Confidence 578999987 9999985 544 3899999999999999999999999999875 57999999999999 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccCCC---------CCcceeec-cCCCC------CCCCCCCCCcccCCCCccC
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIF-EGGTS------DDRLDWGPSFICRGDKEYS 154 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~---------~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~ 154 (358)
+||++||++||++||+||+|+|+||+|.+|++ +..+|+.+ .+... ..+..|.. .....+.|.
T Consensus 161 ~d~~~lv~~~h~~Gi~Vi~D~V~NH~s~~~~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~ 238 (655)
T 3ucq_A 161 DDLSALARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPD--FAPGNFSWD 238 (655)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHTTCCCSCTT--TSCSSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeeccccccchHHHHHhhcCCCCCcccEEEcCCCCCCccccccCcccccc--CCCCccccc
Confidence 99999999999999999999999999998842 12233322 21100 00111110 001112233
Q ss_pred CC----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-------------HHHHHHH--
Q 018278 155 DG----QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVY-- 215 (358)
Q Consensus 155 ~~----~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~-- 215 (358)
+. .+.+++..+...+||||++||+|+++|++++++|++ +||||||+|+|+++. .++++++
T Consensus 239 ~~~~~~~~~~~~~~f~~~qpDLn~~np~V~~~i~~~l~~w~~-~GvDGfRlDa~~~l~k~~g~~~~~~~~~~~~l~~~r~ 317 (655)
T 3ucq_A 239 EEIGEGEGGWVWTTFNSYQWDLNWANPDVFLEFVDIILYLAN-RGVEVFRLDAIAFIWKRLGTDCQNQPEVHHLTRALRA 317 (655)
T ss_dssp TTSSSSSCEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHH
T ss_pred ccccccCCceEeccccCCCCccCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhccccCCCccCCcHHHHHHHHHHHH
Confidence 22 556677888999999999999999999999999997 999999999999984 4677665
Q ss_pred -HHhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcC----CceeeeccchHHHHHHHH-cCchhhhhhcC
Q 018278 216 -MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG----GAVAAFDFTTKGILQAAV-QGELWRLKDSN 288 (358)
Q Consensus 216 -~~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~df~~~~~l~~~~-~~~~~~~~~~~ 288 (358)
++...| .+++||+|.. .+.+..|++... .+..+|||++...+..++ .++...+.++.
T Consensus 318 ~~~~~~p~~~~vgE~~~~----------------~~~~~~y~~~~~~~~~~~~~~fdf~l~~~~~~a~~~~~~~~L~~~l 381 (655)
T 3ucq_A 318 AARIVAPAVAFKAEAIVA----------------PADLIHYLGTRAHHGKVSDMAYHNSLMVQLWSSLASRNTRLFEEAL 381 (655)
T ss_dssp HHHHHCTTCEEEECCCCC----------------HHHHGGGTCCSSSSCCSCSEEECHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHhCCCeEEEEecCCC----------------HHHHHHHhCCCCccccccCeEECccchHHHHHHHhcCCHHHHHHHH
Confidence 455566 8999999854 456667776432 367899999998888776 34445555544
Q ss_pred CCCCCccCCCCCceeecccCCCCCcCcC-----------------------------------------------CCC--
Q 018278 289 GKPPGFIGILPQNAVTFIDNHDTGSTQR-----------------------------------------------LWP-- 319 (358)
Q Consensus 289 ~~~~~~~~~~~~~~v~f~~nHD~~r~~~-----------------------------------------------~~~-- 319 (358)
...... ..+...++|++|||+-.+.- ..+
T Consensus 382 ~~~~~~--~~~~~~v~Fv~nHD~i~l~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~n~~~~~~~i~~~~ 459 (655)
T 3ucq_A 382 RAFPPK--PTSTTWGLYVRCHDDIGWAISDEDAARAGLNGAAHRHFLSDFYSGQFPGSFARGLVFQYNPVNGDRRISGSA 459 (655)
T ss_dssp HTCCCC--CTTCEEEECSCCSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEESCCTTTCCCEEECCH
T ss_pred HhCcCC--CCCCeEEEEeeeCCCCCccCChHHHHhhcccchHHHHHHHHHhcccCCcccccCcccccccccccccccccc
Confidence 322221 13456799999999932210 000
Q ss_pred ------------CC-------cchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 320 ------------FP-------SDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 320 ------------~~-------~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
.+ .++.++|++++|++||+|+||||||+|+.+..
T Consensus 460 ~s~~g~~~al~~~d~~~~~~~~~r~~la~aill~~pGiP~iy~GdE~G~~nd~ 512 (655)
T 3ucq_A 460 ASLAGLEAALETGDPGRIEDAVRRLLLLHTVILGFGGVPLLYMGDELALLNDY 512 (655)
T ss_dssp HHHTTHHHHHHHCCHHHHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCG
T ss_pred cchhhHHHHhccCCchhhhhHHHHHHHHHHHHHhCCCeeEEEchHhhcCCCch
Confidence 00 13778999999999999999999999998753
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-53 Score=410.08 Aligned_cols=282 Identities=21% Similarity=0.259 Sum_probs=208.8
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCCCCCCCCCC
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYDLDASKYGS 89 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~id~~~~Gt 89 (358)
.++.||||.|.| +|+||+++|+|||+||||+|||+||+++. .+|||++.||++++ |+|||
T Consensus 3 ~~~~~~~q~f~~--------~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~-~~~G~ 73 (422)
T 1ua7_A 3 IKSGTILHAWNW--------SFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGN-RYLGT 73 (422)
T ss_dssp TTTSCEEECTTB--------CHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEE-TTTEE
T ss_pred CcCcEEEEEecC--------CHHHHHHHHHHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccC-CCCCC
Confidence 468899999986 69999999999999999999999998742 16899999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (358)
++||++||++||++||+||+|+|+||++.+++..... .. ...+|.... .....|.+. ....++++.++
T Consensus 74 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~---~~-----~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~ 141 (422)
T 1ua7_A 74 EQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNE---VK-----SIPNWTHGN--TQIKNWSDR--WDVTQNSLLGL 141 (422)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTSCHH---HH-----TSTTCEEEC--CBCCCTTCH--HHHHHSBBTTB
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcccCCccccCcc---cc-----CCcccccCC--CCCCCcCch--hcccccccCCC
Confidence 9999999999999999999999999999987632110 00 011221100 000111100 00122456678
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC--------HHHHHHHHHhcCC-CeEEEeccCCCCCCCCCCC
Q 018278 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA--------PSITKVYMENTSP-DFAVGEKWDSLSYGPDGKP 240 (358)
Q Consensus 170 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~--------~~~~~~~~~~~~p-~~~~gE~~~~~~~~~~~~~ 240 (358)
+|||++||+||++|++++++|++ +||||||+|+|++++ .+||+++. .+| ++++||+|.+.
T Consensus 142 ~dln~~~~~v~~~l~~~~~~w~~-~gvDGfR~D~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~vgE~~~~~-------- 210 (422)
T 1ua7_A 142 YDWNTQNTQVQSYLKRFLERALN-DGADGFRFDAAKHIELPDDGSYGSQFWPNIT--NTSAEFQYGEILQDS-------- 210 (422)
T ss_dssp CEECTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCTTSGGGCCSHHHHHT--CSSCSEEEECCCCST--------
T ss_pred CccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEhhhhcCccchhhhHHHHHHHhh--cCCCceEEEEeecCC--------
Confidence 99999999999999999999997 999999999999986 57999876 345 89999999652
Q ss_pred CCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc---hhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCC
Q 018278 241 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRL 317 (358)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~ 317 (358)
......|.... ...+|.+...+.+++.+. ...+.+. . .+..|.++++|++|||+.|....
T Consensus 211 -------~~~~~~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~---~~~~~~~~~~f~~nHD~~r~~~~ 273 (422)
T 1ua7_A 211 -------ASRDAAYANYM----DVTASNYGHSIRSALKNRNLGVSNISHY---A---SDVSADKLVTWVESHDTYANDDE 273 (422)
T ss_dssp -------TCCHHHHHTTS----EEECHHHHHHHHHHHHHTCCCHHHHSSC---S---SSSCGGGEEECSSCHHHHHSTTC
T ss_pred -------CccHHHHhhcC----CcchhHHHHHHHHHHhCCCcCHHHHhhc---c---ccCChhheeEEEecCCCCCCCcc
Confidence 12234555422 345667777777776432 3333321 1 13356778999999999887632
Q ss_pred --CCCCcchHHHHHHHHHc-CCCeeeeecCccccCCC
Q 018278 318 --WPFPSDKVMLGYAYILT-HPGTPCIVISVTYPLFH 351 (358)
Q Consensus 318 --~~~~~~~~~~a~a~l~~-~pG~P~IyyGdE~G~~~ 351 (358)
.....++.++|++++++ .||+|+||||+|+|+.+
T Consensus 274 ~~~~~~~~~~~la~a~ll~~~~G~P~iy~G~E~g~~~ 310 (422)
T 1ua7_A 274 ESTWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGGNG 310 (422)
T ss_dssp SSTTCCHHHHHHHHHHHHTSSSSEEEEECCCTTCBTT
T ss_pred ccccCCHHHHHHHHHHHHhCCCCeeEEecCcccCCCC
Confidence 12344578899999999 59999999999999765
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-52 Score=412.72 Aligned_cols=298 Identities=17% Similarity=0.201 Sum_probs=199.2
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~ 98 (358)
.++.||||++. .+.. ++|||+||+++|+|||+||||+||||||++++ .+|||++.||++|+ |+|||++||++||+
T Consensus 124 ~~~~viYei~~-~~f~-~~G~~~gi~~~L~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~-~~~Gt~~d~~~lv~ 200 (602)
T 2bhu_A 124 LADCVFYEVHV-GTFT-PEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPY-APYGRPEDLMALVD 200 (602)
T ss_dssp GGGCCEEEECH-HHHS-SSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEEC-GGGCCHHHHHHHHH
T ss_pred cccceEEEEee-cccc-cCCCHHHHHHHHHHHHHcCCCEEEECChhhccCCCCCCcccccCcccC-cCCCCHHHHHHHHH
Confidence 36689999997 3332 26999999999999999999999999999876 46899999999999 99999999999999
Q ss_pred HHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 018278 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (358)
Q Consensus 99 ~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~ 178 (358)
+||++||+||+|+|+||++.+++... .|.+ .|... .....| .++||++||+
T Consensus 201 ~~H~~Gi~VilD~V~NH~~~~~~~~~----~~~~-------~~~~~---~~~~~w---------------~~~ln~~~~~ 251 (602)
T 2bhu_A 201 AAHRLGLGVFLDVVYNHFGPSGNYLS----SYAP-------SYFTD---RFSSAW---------------GMGLDYAEPH 251 (602)
T ss_dssp HHHHTTCEEEEEECCSCCCSSSCCHH----HHCG-------GGEEE---EEECSS---------------SEEECTTSHH
T ss_pred HHHHCCCEEEEEecccccccCCcccc----ccCc-------ccccC---CCCCCC---------------CCCccCCCHH
Confidence 99999999999999999997754110 0100 01000 000011 2469999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeeccCCCC----CHHHHHHHHH---hcCCCeEEEeccCCCCCC---CCC-CCCCCCCCc
Q 018278 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGY----APSITKVYME---NTSPDFAVGEKWDSLSYG---PDG-KPDANQDGH 247 (358)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a~~i----~~~~~~~~~~---~~~p~~~~gE~~~~~~~~---~~~-~~~~~~~~~ 247 (358)
||++|++++++|++++||||||+|+++++ +.+||+++.+ +..+++++||.+...... +.+ +..|+.+ +
T Consensus 252 v~~~i~~~~~~W~~~~gvDGfR~D~~~~i~~~~~~~fl~~~~~~v~~~~~~~li~E~~~~~~~~~~~~~g~~~~~n~~-~ 330 (602)
T 2bhu_A 252 MRRYVTGNARMWLRDYHFDGLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDD-F 330 (602)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCCSEEECTH-H
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEechHhhhccchHHHHHHHHHHHhhcCCeEEEEEeCCCCcccccCCCCcceEECch-h
Confidence 99999999999998899999999999999 6679988744 343488999998652210 000 1223321 2
Q ss_pred hhhHHHHHHhcCCceeeeccch-HHHHHHHHc------Cchhhhh---hcCCCCCCccCCCCCceeecccCCCCC-----
Q 018278 248 RGALKDWVQAAGGAVAAFDFTT-KGILQAAVQ------GELWRLK---DSNGKPPGFIGILPQNAVTFIDNHDTG----- 312 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~df~~-~~~l~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~v~f~~nHD~~----- 312 (358)
.+.++.++.+... ...-+|.. ...+...+. +...... ...+.. .....|.+.++|++|||+.
T Consensus 331 ~~~l~~~~~g~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~fl~nHD~~~n~~~ 407 (602)
T 2bhu_A 331 HHETRVTLTGEQE-GYYAGYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHP--SDALEAPNFVYCIQNHDQIGNRPL 407 (602)
T ss_dssp HHHHHHHHHCCCS-GGGGGCCCSHHHHHHHHHHSSSCEEEEECCTTCCEEEECC--CTTCCGGGEEEESCCHHHHHTSTT
T ss_pred hHHHHHHhcCCCc-ccccccccCHHHHHHHHHhccccccccchhhccccccCcc--ccCCCccceeeehhcCccccccCc
Confidence 2233333221110 00000100 011111111 0000000 000000 0112356779999999983
Q ss_pred --cCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 313 --STQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 313 --r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
|+....+...++.++|++++|++||+|+||||||+|+.+++.
T Consensus 408 g~r~~~~~~~~~~~~k~a~a~ll~~pG~P~iy~G~E~G~~~~~~ 451 (602)
T 2bhu_A 408 GERLHQSDGVTLHEYRGAAALLLTLPMTPLLFQGQEWAASTPFQ 451 (602)
T ss_dssp CCCGGGSTTCCHHHHHHHHHHHHHSSSEEEEETTGGGTCSSCCC
T ss_pred cchhhhhhcccHHHHHHHHHHHHhCCCCcEEecchhhcCcCCCc
Confidence 433332335578999999999999999999999999998743
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=405.18 Aligned_cols=290 Identities=17% Similarity=0.135 Sum_probs=208.9
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhh-hHHHcCCCEEEeCCCC-CCCC-CCCCCccccCCCCCCCCCCHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPS-QSVA-PQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~-yl~~LGv~~I~l~Pi~-~~~~-~~gY~~~d~~~id~~~~Gt~~d~~~Lv~ 98 (358)
+++|++++|. |++. ||+|+||+++|+ |||+| ||+|||+||+ ++++ +|||+|.||++|| |+|||++||++||+
T Consensus 2 ~n~i~~~sf~-d~~~--gg~~~~i~~~ld~yL~~L-v~~IwL~Pi~~~~~~~~~GY~~~dy~~id-p~~Gt~~df~~Lv~ 76 (504)
T 1r7a_A 2 KNKVQLITYA-DRLG--DGTIKSMTDILRTRFDGV-YDGVHILPFFTPFDGADAGFDPIDHTKVD-ERLGSWDDVAELSK 76 (504)
T ss_dssp CSSCEEEECS-SSBS--SSSHHHHHHHHHHHSTTT-CCEEEECCCEECSSSSSTTSSCSEEEEEC-TTTCCHHHHHHHHT
T ss_pred CccEeeeeeE-eccC--CCCHHHHHHHHHHHHHHH-hCeEEECCcccCCCCCCCCCCccChhhcC-cccCCHHHHHHHHh
Confidence 6899999996 8773 589999999998 99999 9999999999 8886 9999999999999 99999999999996
Q ss_pred HHHHcCCEEEEEeecccccccCCC-----------CCcceeec-c----CCCCCCCCCCCCCcccCC-----CCccCCCC
Q 018278 99 AFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIF-E----GGTSDDRLDWGPSFICRG-----DKEYSDGQ 157 (358)
Q Consensus 99 ~~H~~Gi~VilD~V~NH~~~~~~~-----------~~~~~~~~-~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (358)
||+||+|+|+||+|.+|++ +..+|+.. . ++.+ ..+|...+.... .+.+. ++
T Consensus 77 -----Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~~y~~~y~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~-~~ 148 (504)
T 1r7a_A 77 -----THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGAT--EEDLAGIYRPRPGLPFTHYKFA-GK 148 (504)
T ss_dssp -----TSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBC--HHHHHTSCCSSSSCSEEEEEET-TE
T ss_pred -----CCEEEEEECCCcCCCcchHHHHHhhcCCCCccccceEeccccCcCCCC--CcchhhhcCCCCCCCCCCceEc-CC
Confidence 9999999999999998741 22334331 1 1100 011111010000 01111 23
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC----------HH---HHHHH---HHhcCC
Q 018278 158 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA----------PS---ITKVY---MENTSP 221 (358)
Q Consensus 158 ~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~----------~~---~~~~~---~~~~~p 221 (358)
+.+.+..+...+||||++||+||++|++++++|++ +||||||+|+|+++. .+ +++++ +++ .+
T Consensus 149 ~~~~~~~f~~~~pdLn~~np~Vr~~i~~~~~~W~~-~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 226 (504)
T 1r7a_A 149 TRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMAA-SHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGVK-RG 226 (504)
T ss_dssp EEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHH-TT
T ss_pred ceEEECccCCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEcccccccccCCCcccCchhHHHHHHHHHHHhCc-CC
Confidence 34445566789999999999999999999999995 999999999999773 23 33443 333 34
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHH-cCchhhhhhcCCCCCCccCCCCC
Q 018278 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQ 300 (358)
Q Consensus 222 ~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 300 (358)
++++||.|.. .. ...........+|+|++...+..++ .++...+...... .|.
T Consensus 227 ~~~igE~~~~----------------~~---~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~-------~p~ 280 (504)
T 1r7a_A 227 LEILIEVHSY----------------YK---KQVEIASKVDRVYDFALPPLLLHALSTGHVEPVAHWTDI-------RPN 280 (504)
T ss_dssp CEEEECCCSC----------------HH---HHHHHHTTSSEEEECSHHHHHHHHHHHCCCHHHHHHHHH-------SCS
T ss_pred cEEEEEeccc----------------cc---cccccCCccceEECchhhhhhhhhhhccchHHHHHHHHh-------Ccc
Confidence 8999999853 11 1111235678889999876666554 3333333332111 234
Q ss_pred ceeecccCCCCCcCcCC--------------------------------------------------------CCCCcch
Q 018278 301 NAVTFIDNHDTGSTQRL--------------------------------------------------------WPFPSDK 324 (358)
Q Consensus 301 ~~v~f~~nHD~~r~~~~--------------------------------------------------------~~~~~~~ 324 (358)
..++|++|||+.|+... ++...++
T Consensus 281 ~~~nfl~nHD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~~~~~ 360 (504)
T 1r7a_A 281 NAVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQH 360 (504)
T ss_dssp SEEECSCCSSCBCSTTTSCCSSCTTSCCSSCHHHHHHHHHHHHHHTTTHHHHHSGGGSBCSCSSSBCSCHHHHTTTCHHH
T ss_pred ccceecccCCcccccccccccccccccccCCHHHHHHHHHHHhhccccccccccccccccCCccccccchhhhccCcHHH
Confidence 67999999999986421 1123357
Q ss_pred HHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 325 VMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 325 ~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
.++|++++||+||+|+||||||+|+.+.
T Consensus 361 ~~la~a~llt~pG~P~iy~GdE~G~~~~ 388 (504)
T 1r7a_A 361 YIAARAVQFFLPGVPQVYYVGALAGKND 388 (504)
T ss_dssp HHHHHHHHHHSSSEEEEEHHHHTTCCCC
T ss_pred HHHHHHHHHhCCCceEEEeccccccCCC
Confidence 8899999999999999999999999754
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-52 Score=420.76 Aligned_cols=302 Identities=20% Similarity=0.272 Sum_probs=204.6
Q ss_pred CCCceEEEeeec---CCCCCC---CCchHHHHh-----------hhhhHHHcCCCEEEeCCCCCCCC----------CCC
Q 018278 21 TSPALLFQGFNW---ESSNKA---GGWYNSLKN-----------SIPDLSNAGITHVWLPPPSQSVA----------PQG 73 (358)
Q Consensus 21 ~~~~v~~q~F~~---~~~~~~---~G~~~gl~~-----------~L~yl~~LGv~~I~l~Pi~~~~~----------~~g 73 (358)
+++.||||++.. ++++++ .|||.|+++ +|+|||+||||+||||||+++++ +||
T Consensus 212 ~~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e~~~~~l~Gi~~~LdyLk~LGvtaI~L~Pi~~~~~~de~~~~~~~~wG 291 (718)
T 2e8y_A 212 PVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTHVELLPVNDFAGVDEEKPLDAYNWG 291 (718)
T ss_dssp GGGCCEEEECHHHHHHSTTSCCSSTTSGGGGGCTTCBCTTSCBCHHHHHHHHTCSEEEESCCEEESSSCTTSGGGCCCCC
T ss_pred hhhcEEEEEehHHhcCCCCCCCCCCCCeeccccccccccccchhhhHHHHHcCCCEEEECCccccCccccccccccCcCC
Confidence 567899999852 223332 388888876 89999999999999999997643 599
Q ss_pred CCccccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCc
Q 018278 74 YMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145 (358)
Q Consensus 74 Y~~~d~~~id~~~~Gt--------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
|++.||++|+ ++||+ ++||++||++||++||+||||+|+||++.+|. .| |.+..+ .|.-..
T Consensus 292 Yd~~dy~a~~-~~yg~~p~~g~~~~~dfk~LV~~aH~~GI~VIlDvV~NHt~~~~~----~~--f~~~~p----~y~~~~ 360 (718)
T 2e8y_A 292 YNPLHFFAPE-GSYASNPHDPQTRKTELKQMINTLHQHGLRVILDVVFNHVYKREN----SP--FEKTVP----GYFFRH 360 (718)
T ss_dssp CSEEEEEEEC-STTSSCSSSHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCSSGGG----SH--HHHHST----TTSBCB
T ss_pred CCccCCCCcC-cccccCCCCccccHHHHHHHHHHHHHCCCEEEEEEecccccCccc----cc--ccccCC----CeEEec
Confidence 9999999999 99997 69999999999999999999999999999862 01 221111 110000
Q ss_pred ccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHH---HHhcCC-
Q 018278 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP- 221 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~---~~~~~p- 221 (358)
.. .+.+..+.. ..+|||++||+||++|++++++|++++||||||||++++++.++|+++ +++.+|
T Consensus 361 --~~-------~g~~~n~~~--~g~dln~~np~Vr~~i~d~~~~Wl~e~gVDGfR~D~~~~~~~~~~~~~~~~~~~~~p~ 429 (718)
T 2e8y_A 361 --DE-------CGKPSNGTG--VGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGILDIDTVLYMKEKATKAKPG 429 (718)
T ss_dssp --CT-------TSSBCCTTS--SSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHSTT
T ss_pred --CC-------CCcccCCCC--cccccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeccccCCHHHHHHHHHHHHHhCCC
Confidence 00 000100111 136899999999999999999999999999999999999999999887 445567
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHH---------HcCc---hhhhhhcC-
Q 018278 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAA---------VQGE---LWRLKDSN- 288 (358)
Q Consensus 222 ~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~---------~~~~---~~~~~~~~- 288 (358)
++++||.|...+. +... .... .+-...-.....|++.++..+... ..+. ...+...+
T Consensus 430 ~~ligE~w~~~~~-------~~~~--~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~f~~~~~~f~~g~~~~~~~l~~~l~ 499 (718)
T 2e8y_A 430 ILLFGEGWDLATP-------LPHE--QKAA-LANAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNGESAQAVMHGIA 499 (718)
T ss_dssp CEEEECCCCCCCS-------SCGG--GBCC-GGGGGGCTTCEEECHHHHHHHHCCSSSTTCCCGGGTCGGGHHHHHHHHB
T ss_pred eEEEEeecCCCCc-------cccc--cccc-cccccCCCceEEEChHHHHHhhcccccccccceecCChhhHHHHHHHHh
Confidence 8899999975221 0000 0000 000000112344666666555421 1111 11122111
Q ss_pred CCC--CC--ccCCCCCceeecccCCCCCcCcCCCC----C-----CcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 289 GKP--PG--FIGILPQNAVTFIDNHDTGSTQRLWP----F-----PSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 289 ~~~--~~--~~~~~~~~~v~f~~nHD~~r~~~~~~----~-----~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
... .. .....|...++|++|||+.|+.+++. . ..++.++|++++|++||+|+||||||+|+.+..|
T Consensus 500 ~~~~~~~~~~~~~~~~~~vnfv~nHD~~rl~~~~~~~~~~~~~~~~~~~~kla~a~ll~~~G~P~iy~GdE~g~~~~g~ 578 (718)
T 2e8y_A 500 GSSGWKALAPIVPEPSQSINYVESHDNHTFWDKMSFALPQENDSRKRSRQRLAVAIILLAQGVPFIHSGQEFFRTKQGV 578 (718)
T ss_dssp TTSCBTTBCCSSSSGGGEEECSCCSSSSCHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTSBSEEEEETTGGGTCCCTTC
T ss_pred cCccccccccccCCcccEEEEEecCCCchHHhhhhccCCCCCHHHHHHHHHHHHHHHHHCCCCcEEeechhhCccCCCC
Confidence 100 00 11224667899999999998765432 1 1257899999999999999999999999987654
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=406.00 Aligned_cols=305 Identities=13% Similarity=0.123 Sum_probs=211.2
Q ss_pred cCCCCCCceEEEeee-----cCCCCC------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-------CC
Q 018278 17 FLPFTSPALLFQGFN-----WESSNK------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-------PQ 72 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~-----~~~~~~------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-------~~ 72 (358)
.+.|.++.||||++. |+..+. .+|||+|++++|+|||+||||+||||||++++. +|
T Consensus 77 ~~~~~~~~~iYe~~~~~f~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~g~~~~ 156 (637)
T 1gjw_A 77 TPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPS 156 (637)
T ss_dssp SGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSSCC
T ss_pred ccCchhhCeEEEEeeccccCCCCCCCCccccccccchhccccHHHHHHHHHHHHHcCCCEEEeCCCeecccccccCCCCC
Confidence 345777889999984 332211 249999999999999999999999999998652 35
Q ss_pred CCCccccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCC--CCcceeeccCCCCCCC--CC
Q 018278 73 GYMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKD--GRGIYCIFEGGTSDDR--LD 140 (358)
Q Consensus 73 gY~~~d~~~id~~~~Gt--------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~--~~~~~~~~~~~~~~~~--~~ 140 (358)
||++.||++++ ++||| .+||++||++||++||+||+|+|+||++.+++. ...+|+.+.+...... ..
T Consensus 157 gY~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~p~~f~~~~~~~~~~y~~p 235 (637)
T 1gjw_A 157 PYSVKNPMELD-ERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPP 235 (637)
T ss_dssp TTSEEEEEEEC-GGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCCC
T ss_pred ccCCCCcCCcC-cccCCCcccccchHHHHHHHHHHHHHCCCEEEEEECcCCCcCcchhhhhCCceeEecccccccccCCc
Confidence 99999999999 99999 799999999999999999999999999998752 1223443222100000 00
Q ss_pred CCCC--------------------------c------------------------------ccCCC-----------Ccc
Q 018278 141 WGPS--------------------------F------------------------------ICRGD-----------KEY 153 (358)
Q Consensus 141 ~~~~--------------------------~------------------------------~~~~~-----------~~~ 153 (358)
|.+. + .+... ..|
T Consensus 236 ~~~~l~~~~~~~~~~~~~Y~~~~~~~~~~~f~~~~~~~~p~~w~~~~~~~g~~~~~~~~~fg~~~~~~~~dw~~~~~~~w 315 (637)
T 1gjw_A 236 RAEELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTW 315 (637)
T ss_dssp CCTTSCSBCCCHHHHHHHHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSCCB
T ss_pred cccccccCCcccccccccccChhhhhhhhhcccCccccChhhcccccccccchhhhhhhccccccCcccccccccCCCCc
Confidence 0000 0 00000 011
Q ss_pred CCCCC------------CCC--CCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHH
Q 018278 154 SDGQG------------NDD--TGEDF-------QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212 (358)
Q Consensus 154 ~~~~~------------~~~--~~~~~-------~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~ 212 (358)
.+... .+. ....+ ..+++||++||+||++|++++++|++++||||||||+|++++.+||
T Consensus 316 ~d~~~l~~~~~~p~~~~~~~~~~~~dy~~f~~~~~~~~~ln~~np~V~~~l~d~~~~W~~e~gvDGfRlD~a~~l~~~f~ 395 (637)
T 1gjw_A 316 DDVTFLRLYLDHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKELL 395 (637)
T ss_dssp TTEEECCCBSSCCGGGGGGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGSCHHHH
T ss_pred ccceeeecccCCchhhhhccccCCCcceecchhhhcccCcccCCHHHHHHHHHHHHHHhhhcCCceEEecchhhCCHHHH
Confidence 10000 000 00000 1356679999999999999999999999999999999999999999
Q ss_pred HHHH---HhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcC
Q 018278 213 KVYM---ENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSN 288 (358)
Q Consensus 213 ~~~~---~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~ 288 (358)
+++. ++.+| ++++||.|... ....|.. .+.+.++++.+.... -...+..+....
T Consensus 396 ~~~~~~v~~~~p~~~ligE~~~~~-----------------~~~~~~~--~gfd~~~~~~~~~~~---~~~~~~~~~~~l 453 (637)
T 1gjw_A 396 DLIIKNVKEYDPAFVMIAEELDME-----------------KDKASKE--AGYDVILGSSWYFAG---RVEEIGKLPDIA 453 (637)
T ss_dssp HHHHHHHHHHCTTCEEEECCCCGG-----------------GHHHHHH--HTCSEECCCHHHHHT---CTTTGGGHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCc-----------------chhhHhh--cCCceEeccchhccc---cHHHHHHHHHhh
Confidence 9884 45677 88999999631 1123444 235566777654321 001122221111
Q ss_pred CCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCC-CeeeeecCccccCCCC
Q 018278 289 GKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVISVTYPLFHP 352 (358)
Q Consensus 289 ~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~p-G~P~IyyGdE~G~~~~ 352 (358)
...+...++|++|||+.|+.+++. ..++.++|+++++++| |+|+||||||+|+.++
T Consensus 454 -------~~~~~~~v~fl~nHD~~Rl~~~~~-~~~~~~~a~~l~l~~~~GiP~iy~GdE~G~~~p 510 (637)
T 1gjw_A 454 -------EELVLPFLASVETPDTPRIATRKY-ASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQP 510 (637)
T ss_dssp -------HTCSSCEEECSCCTTSCCGGGSTT-HHHHHHHHHHHHHTSTTEEEEEETTGGGTCCSC
T ss_pred -------hccchHHhhcccCCCccccccccc-CcHHHHHHHHHHHHcCCCCcEEEeeeecCccCc
Confidence 124677899999999999998875 2356788889999998 9999999999998754
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-50 Score=402.23 Aligned_cols=279 Identities=13% Similarity=0.110 Sum_probs=199.2
Q ss_pred CceEEEeeecCCCCC---CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC---------------CCC--CCccc----
Q 018278 23 PALLFQGFNWESSNK---AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---------------PQG--YMPGR---- 78 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~---~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---------------~~g--Y~~~d---- 78 (358)
..++||+|. .+..+ .+|||+||+++|+|||+||||+|||+||+++++ ++| |++.|
T Consensus 231 ~~~iYEi~~-rsf~~~~~~~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~~~~~~~d~GspY~i~d~~~~ 309 (695)
T 3zss_A 231 YGAWYEFFP-RSEGTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGG 309 (695)
T ss_dssp CEEEEECCG-GGSCCSSCCSCCHHHHGGGHHHHHHTTCCEEEECCCSCBCCTTCCCGGGCSSCCTTCCCCTTSBCBTTBC
T ss_pred cceEEEEeh-hHhcCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCcccCCccccccccccccccccCCCCcccccCCCCC
Confidence 367888775 33321 289999999999999999999999999999753 345 88888
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCC--CcceeeccCCCCCCCCCCCCCcccCCCCccCCC
Q 018278 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG--RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDG 156 (358)
Q Consensus 79 ~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (358)
|++|| |+|||.+||++||++||++||+||+|+|+|| +.+|++. ..+|+.+.+.. . ..+..
T Consensus 310 y~~id-p~~Gt~edfk~LV~~aH~~GI~VilD~V~Nh-s~~~~~~~~~~dwf~~~~dg---~------------~~~~~- 371 (695)
T 3zss_A 310 HDSIH-PALGTLDDFDHFVTEAGKLGLEIALDFALQC-SPDHPWVHKHPEWFHHRPDG---T------------IAHAE- 371 (695)
T ss_dssp TTSCC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCEE-CTTSTHHHHCGGGSCCCTTS---C------------CCCEE-
T ss_pred ccccC-cccCCHHHHHHHHHHHHHCCCEEEEEeeccC-CccchhhhcccceeeecCCC---C------------cccCC-
Confidence 99999 9999999999999999999999999999998 5666521 12233222100 0 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC-CeEEEeccC
Q 018278 157 QGNDDTGEDFQPAPDIDHLN--PRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGEKWD 230 (358)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~n--~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p-~~~~gE~~~ 230 (358)
.....+..++|||++| |+|+++|++++++|++ +||||||+|++++++.+||+++. ++.+| ++++||+|.
T Consensus 372 ----~~~~~~~~~~dLn~~n~~p~V~~~l~~~l~~Wi~-~GVDGfRlD~a~~~~~~f~~~~~~~v~~~~pd~~~vgE~~~ 446 (695)
T 3zss_A 372 ----NPPKKYQDIYPIAFDADPDGLATETVRILRHWMD-HGVRIFRVDNPHTKPVAFWERVIADINGTDPDVIFLAEAFT 446 (695)
T ss_dssp ----ETTEEETTCEECCCSSCHHHHHHHHHHHHHHHHH-TTCCEEEESSGGGSCHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred ----CCCccccccccccccCCcHHHHHHHHHHHHHHHH-hCCCEEEecCcchhhHHHHHHHHHHHHhhCCCceEEEeecC
Confidence 0011234567899999 9999999999999998 99999999999999999999984 45577 899999995
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCC
Q 018278 231 SLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 310 (358)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD 310 (358)
. ...+..+.. .++...++|.........+..-...+... .. .....++|++|||
T Consensus 447 ~----------------p~~~~~l~~--~gfd~~~~y~~~~~~~~~l~~~~~~l~~~-------~~-~~~~~~~FvdNHD 500 (695)
T 3zss_A 447 R----------------PAMMATLAQ--IGFQQSYTYFTWRNTKQELTEYLTELSGE-------AA-SYMRPNFFANTPD 500 (695)
T ss_dssp C----------------HHHHHHHHH--TTCSEEECSGGGCCSHHHHHHHHHHHTTG-------GG-GTCCEEEESCBTT
T ss_pred C----------------hHHhhhhhc--cCcCceechhhhhcchhHHHHHHHhhhhh-------hh-hcccceecccCCC
Confidence 3 223333332 34555666543110000000000111110 00 1123468999999
Q ss_pred CCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 311 TGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 311 ~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
+.|..+..+ +..+.++++++++|+||+|+||||+|+|+.++
T Consensus 501 ~~R~~s~~g-~~~~~kla~all~tl~GiP~IYyGdE~G~~g~ 541 (695)
T 3zss_A 501 ILHAYLQHG-GRPAFEVRAVLAATLSPTWGIYSGYELCENTP 541 (695)
T ss_dssp BCCHHHHHH-CHHHHHHHHHHHHHHCSEEEEETTGGGTCCCB
T ss_pred ccchhcccc-hHHHHHHHHHHHHhcCCCcEEEcCeeccccCC
Confidence 999776554 45678899999999999999999999999865
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=420.14 Aligned_cols=300 Identities=20% Similarity=0.241 Sum_probs=202.5
Q ss_pred CCCCCceEEEeeec---CCCCCC---CCchHHHHhh-----------hhhHHHcCCCEEEeCCCCCCCC---------CC
Q 018278 19 PFTSPALLFQGFNW---ESSNKA---GGWYNSLKNS-----------IPDLSNAGITHVWLPPPSQSVA---------PQ 72 (358)
Q Consensus 19 ~~~~~~v~~q~F~~---~~~~~~---~G~~~gl~~~-----------L~yl~~LGv~~I~l~Pi~~~~~---------~~ 72 (358)
.|+++.||||++.. ++++++ .|+|.|++++ |+|||+||||+||||||+++++ +|
T Consensus 428 ~~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g~~e~~~~~l~Gi~~~LdyLk~LGvtaI~L~Pi~e~~~~de~~~~~~~w 507 (921)
T 2wan_A 428 ANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSIDETQPDTYNW 507 (921)
T ss_dssp SSGGGCCEEEECHHHHHCSTTSCCSSTTSGGGGGCCSCBCGGGCBCHHHHHHHHTCCEEEESCCEEESSSCTTSTTSCCC
T ss_pred CCchhcEEEEEEcCcccCCCCCCCCCCCCeeheeccccccccccchhhHHHHHcCCCEEEeCCccccCcccccccCcCCc
Confidence 34577999999852 222222 3778887765 9999999999999999999764 69
Q ss_pred CCCccccCCCCCCC-----CCC--HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCc
Q 018278 73 GYMPGRLYDLDASK-----YGS--QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145 (358)
Q Consensus 73 gY~~~d~~~id~~~-----~Gt--~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
||++.||++++ ++ +|| ++|||+||++||++||+||||+|+||++.++. .| |.+..+. |....
T Consensus 508 GYd~~dy~ap~-~~y~~dp~Gt~~~~dfk~LV~~aH~~GI~VILDvV~NHt~~~~~----~~--f~~~~p~----y~~~~ 576 (921)
T 2wan_A 508 GYDPRNYNVPE-GAYATTPEGTARITELKQLIQSLHQQRIGVNMDVVYNHTFDVMV----SD--FDKIVPQ----YYYRT 576 (921)
T ss_dssp CCSEEEEEEEC-GGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCSSS----SH--HHHHSTT----TTBCB
T ss_pred CCCCcCCCCCC-cccccCCCCCccHHHHHHHHHHHHHcCCEEEEEEcccccccccc----cc--ccCCCCC----eEEEc
Confidence 99999997555 44 566 79999999999999999999999999999862 01 2221111 10000
Q ss_pred ccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHH---HHhcCC-
Q 018278 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP- 221 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~---~~~~~p- 221 (358)
.....+.+ + ....+|||++||+||++|++++++|++++||||||||++++++.++|+++ +++.+|
T Consensus 577 --~~~g~~~~-------~--~g~~~dln~~~p~Vr~~i~d~l~~Wl~e~gVDGfR~Da~~~~~~~~~~~~~~~l~~~~p~ 645 (921)
T 2wan_A 577 --DSNGNYTN-------G--SGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISNELHAINPG 645 (921)
T ss_dssp --CTTSCBCC-------T--TSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGGCHHHHHHHHHHHHHHCTT
T ss_pred --CCCCcccC-------C--CCcccccccCCHHHHHHHHHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHHHHHhCCc
Confidence 00001110 0 11235799999999999999999999889999999999999999999887 455677
Q ss_pred CeEEEeccCCC-C-CCCCCCC-CCCCCCchhhHHHHHHhcCCc-eeeeccchHHHHHHHH---------cC---chhhhh
Q 018278 222 DFAVGEKWDSL-S-YGPDGKP-DANQDGHRGALKDWVQAAGGA-VAAFDFTTKGILQAAV---------QG---ELWRLK 285 (358)
Q Consensus 222 ~~~~gE~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~df~~~~~l~~~~---------~~---~~~~~~ 285 (358)
++++||.|... . +...... .++ ..++ ...|++.++..++... .+ ....+.
T Consensus 646 ~~ligE~w~~~~~~~~~~~~~~~~~--------------~~gf~~~~~nd~~rd~~~~~~f~~~~~~f~~g~~~~~~~l~ 711 (921)
T 2wan_A 646 IVLYGEPWTGGTSGLSSDQLVTKGQ--------------QKGLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIK 711 (921)
T ss_dssp CEEEECSSCSSCCSSCTTTSCCTTT--------------TTTTTCEEECHHHHHHHHCCTTCTTCCCTTTTCSSCHHHHH
T ss_pred eEEEEecccCCCcccccchhccccc--------------cCCCCeEEechHHHHHHhcccccccchhhhcCChhHHHHHH
Confidence 89999999741 1 1000000 000 0111 3456666665554310 11 111121
Q ss_pred hcCCCCCCccCCCCCceeecccCCCCCcCcCCCC----C-----CcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP----F-----PSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~----~-----~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
..+..........|...++|++|||+.|+..++. . ..++.++|++++|++||+||||||||+|+.++.|
T Consensus 712 ~~l~~~~~~~~~~p~~~vnfv~nHD~~rl~d~l~~~~~~~~~~~~~~~~rla~a~llt~pG~P~iy~GdE~g~~~~g~ 789 (921)
T 2wan_A 712 NGVIGSIQDFTSAPSETINYVTSHDNMTLWDKILASNPSDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGGN 789 (921)
T ss_dssp HHHBTTTTTTCSSGGGEEECSCCSSSCCHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSBSEEEEETTGGGTCCCTTC
T ss_pred HHHhcchhhcccCcceeEEeeeccCCccHHHHhhhhCCCCCHHHHHHHHHHHHHHHHHCCCCcEEEcchhhcccCCCC
Confidence 1111000011124677899999999988765421 1 1246899999999999999999999999987665
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-49 Score=400.71 Aligned_cols=300 Identities=18% Similarity=0.238 Sum_probs=200.0
Q ss_pred CCCCceEEEeeecCCCC--------CCCCchHHHHhh--hhhHHHcCCCEEEeCCCCCCCC-----------CCCCCccc
Q 018278 20 FTSPALLFQGFNWESSN--------KAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSVA-----------PQGYMPGR 78 (358)
Q Consensus 20 ~~~~~v~~q~F~~~~~~--------~~~G~~~gl~~~--L~yl~~LGv~~I~l~Pi~~~~~-----------~~gY~~~d 78 (358)
|.++.||||++. ++.. +.+|||+||+++ |+|||+||||+||||||++++. +|||++.|
T Consensus 170 ~~~~~vIYeihv-~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~ 248 (718)
T 2vr5_A 170 PLKDTVIYEVHV-KGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPIN 248 (718)
T ss_dssp CTTSCCEEEECT-TTTTTTCTTSCTTSTTSHHHHTSHHHHHHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCCBSC
T ss_pred ChhHCEEEEEEc-chhhcCCCCCCcccCcCHHHHhcchhhHHHHHcCCCeEEEeCCEecCccccccccCCcCccCcCccc
Confidence 456789999996 3322 347999999999 9999999999999999999763 58999999
Q ss_pred cCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCC
Q 018278 79 LYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDK 151 (358)
Q Consensus 79 ~~~id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (358)
|++|+ |+||| .+|||+||++||++||+||||+|+||++..++... ...|.+... ..|.... ..
T Consensus 249 y~~~~-~~yGt~~~~~~~~~dfk~lv~~~H~~Gi~VilDvV~NH~~~~~~~~~--~~~~~~~~~---~~yy~~~--~~-- 318 (718)
T 2vr5_A 249 FFSPE-CRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHLGP--TLSFRGIDN---TAYYMLQ--PD-- 318 (718)
T ss_dssp SSSBC-GGGCSSCTTTHHHHHHHHHHHHHHTTTCEEEEEECCSCCSSCSTTSC--CSSHHHHHS---TTTBCBC--TT--
T ss_pred CcccC-hhhcCCCCCCchHHHHHHHHHHHHHCCCEEEEEeccCcccCccccCc--cccccCCCC---CcceEeC--CC--
Confidence 99999 99999 89999999999999999999999999998875211 001111000 0111000 00
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHH---------HHHHHHHh-cCC
Q 018278 152 EYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS---------ITKVYMEN-TSP 221 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~---------~~~~~~~~-~~p 221 (358)
+...+ ..+...+++||++||+||++|++++++|++++||||||||+|++++.+ +++++... ..|
T Consensus 319 ----~~~~~--~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gvDGfR~D~~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 392 (718)
T 2vr5_A 319 ----NKRYY--LDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDLAAALARELYSVNMLNTFFIALQQDPILS 392 (718)
T ss_dssp ----TSSSB--CCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTGGGGGBSSSSBCTTCHHHHHHHHCTTGG
T ss_pred ----CCcee--ecCCCccCeecCCCHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhhhccCCccchHHHHHHHHhCcccC
Confidence 00001 112234578999999999999999999999999999999999998654 45554332 334
Q ss_pred -CeEEEeccCCCC--CCCCCCC----CCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCc
Q 018278 222 -DFAVGEKWDSLS--YGPDGKP----DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGF 294 (358)
Q Consensus 222 -~~~~gE~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~ 294 (358)
++++||.|.... +...+.+ .|| +.+++.++.|+.+... ....+...+.+.......
T Consensus 393 ~~~liaE~w~~~~~~~~~~~f~~~~~~wn-~~~r~~~~~f~~g~~~--------~~~~~~~~l~~~~~~y~~-------- 455 (718)
T 2vr5_A 393 QVKLIAEPWDVGQGGYQVGNFPYQWAEWN-GKYRDSIRRFWRGEAL--------PYSEIANRLLGSPDIYLG-------- 455 (718)
T ss_dssp GSEEEECCBCSSTTCBCTTCSCTTEEEEC-HHHHHHHHHHHHTCCE--------EHHHHHHHHTTCHHHHGG--------
T ss_pred CcEEEecccccCCCcccccCCchhHHHHh-HHHHHHHHHHHcCCcc--------hHHHHHHHHhcchhhhcc--------
Confidence 889999997532 1111111 122 1223444444432210 011111111111111100
Q ss_pred cCCCCCceeecccCCCCCcCcCCCCC-------------------------------C-------cchHHHHHHHHHcCC
Q 018278 295 IGILPQNAVTFIDNHDTGSTQRLWPF-------------------------------P-------SDKVMLGYAYILTHP 336 (358)
Q Consensus 295 ~~~~~~~~v~f~~nHD~~r~~~~~~~-------------------------------~-------~~~~~~a~a~l~~~p 336 (358)
.+..|...++|++|||+.|+..++.. . .++.++|++++|++|
T Consensus 456 ~~~~p~~~vnf~~~HD~~~l~dl~~~~~k~~~~~g~~~~dg~~~n~sw~~~~~g~~~~~~~~~~~~~~~r~a~a~ll~~~ 535 (718)
T 2vr5_A 456 NNKTPFASINYVTSHDGFTLEDLVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMITLLVSQ 535 (718)
T ss_dssp GTCCGGGEEECSCCSSSCCHHHHSSCSSCCCGGGSSTTCCSCSCCCCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred cCCCcceeeeeeecCCCCCHHHHHHHhhhhhhhcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 01235678999999999753321110 0 235789999999999
Q ss_pred CeeeeecCccccCCCCC
Q 018278 337 GTPCIVISVTYPLFHPL 353 (358)
Q Consensus 337 G~P~IyyGdE~G~~~~~ 353 (358)
|+||||||||+|+++..
T Consensus 536 G~P~iy~GdE~G~~~~G 552 (718)
T 2vr5_A 536 GTPMILGGDELSRTQRG 552 (718)
T ss_dssp SEEEEETTTTTTCCCTT
T ss_pred CCcEEEechhhcccCCC
Confidence 99999999999998544
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-50 Score=401.20 Aligned_cols=287 Identities=16% Similarity=0.190 Sum_probs=197.3
Q ss_pred CCceEEEeeecCCCC----CC-CCchHHHHhhh-hhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCCCCCCCHHHH
Q 018278 22 SPALLFQGFNWESSN----KA-GGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADL 93 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~----~~-~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~~d~ 93 (358)
+..+|||++. .+.. ++ .|||+||+++| +|||+||||+||||||++++. +|||++.||++|+ |+|||.+||
T Consensus 130 ~~~~iYei~~-~~f~~~~~~g~~g~~~~i~~~ll~yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y~~~~-~~~Gt~~~~ 207 (617)
T 1m7x_A 130 APISIYEVHL-GSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPT-RRFGTRDDF 207 (617)
T ss_dssp SCCEEEEECT-TSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEEC-GGGSCHHHH
T ss_pred CCcEEEEEEH-HHhcCCCCCCCccCHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccCCccC-ccCCCHHHH
Confidence 4679999985 4432 33 58999999997 999999999999999999875 6999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCC
Q 018278 94 KSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDID 173 (358)
Q Consensus 94 ~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 173 (358)
++||++||++||+||||+|+||++.+... |..|.+. . ...+... . + +.. . .| ..++||
T Consensus 208 ~~lv~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~d~~-~--~y~~~~~---~------~--g~~-~--~w-~~~~ln 265 (617)
T 1m7x_A 208 RYFIDAAHAAGLNVILDWVPGHFPTDDFA----LAEFDGT-N--LYEHSDP---R------E--GYH-Q--DW-NTLIYN 265 (617)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCCCSTTS----STTGGGS-C--SSBCC--------------------------CCCBC
T ss_pred HHHHHHHHHCCCEEEEEEecCcccCccch----hhhcCCC-c--cccccCc---c------c--CCc-C--CC-CCceec
Confidence 99999999999999999999999765321 2122211 0 0000000 0 0 000 0 01 124699
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC------------------------CHHHHHHH---HHhcCC-CeEE
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAV 225 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~---~~~~~p-~~~~ 225 (358)
++||+||++|++++++|++++||||||+|+++++ +.+||+++ +++.+| +++|
T Consensus 266 ~~~p~v~~~i~~~~~~W~~~~gvDGfR~D~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~~i 345 (617)
T 1m7x_A 266 YGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTM 345 (617)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcCEEEEcchhhhhhccccccccccccccccccCCchHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999998874 14688887 445667 8999
Q ss_pred EeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchh-------hhhhcCCCCCCccCCC
Q 018278 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELW-------RLKDSNGKPPGFIGIL 298 (358)
Q Consensus 226 gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~ 298 (358)
||.|...+ .. ...+.....+++..+++.+.......+.++.. .+... .....
T Consensus 346 aE~~~~~~-------~~--------~~~~~~~g~gfd~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~ 404 (617)
T 1m7x_A 346 AEESTDFP-------GV--------SRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFG------ILYNY 404 (617)
T ss_dssp ECCSSCCT-------TT--------TBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGG------GTTTT
T ss_pred EeCCCCCc-------cc--------eeeccCCCCccCcEeCCchHHHHHHHhccCccchhhhhccchhh------hhccc
Confidence 99986421 00 00111112235556776665544444433210 11111 00111
Q ss_pred CCceeecccCCCCCcC-----cCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 299 PQNAVTFIDNHDTGST-----QRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 299 ~~~~v~f~~nHD~~r~-----~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
+. ...+++|||+.|. .+.+..+ .+++++|++++|++||+|+||||||+|+.++.+
T Consensus 405 ~~-~fv~~~nHD~~~~g~~~~~~~~~g~~~~~~~~~r~a~~~~l~~pG~P~iy~G~E~G~~~~~~ 468 (617)
T 1m7x_A 405 TE-NFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWN 468 (617)
T ss_dssp TS-CEEEEECGGGSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCC
T ss_pred cc-ceEEEeCCCCcccCccchhhhCCCcHHHHHHHHHHHHHHHHHCCCCcEEEcchhcCCCCCCC
Confidence 11 1234599999853 2333322 256899999999999999999999999987654
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-50 Score=383.73 Aligned_cols=249 Identities=16% Similarity=0.200 Sum_probs=186.6
Q ss_pred hcCCCCCCceEEEee-ecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHH
Q 018278 16 IFLPFTSPALLFQGF-NWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLK 94 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F-~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~ 94 (358)
+.+.|+++.|+||++ .....++++|||+||+++|||||+||||+|||+||+++++ .+|++.||++|| |+|||++||+
T Consensus 8 ~~~~ww~~~viYqi~~~~sf~gdg~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~-~~y~~~dy~~id-p~~Gt~~d~~ 85 (424)
T 2dh2_A 8 PAQKWWHTGALYRIGDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK-DDVAQTDLLQID-PNFGSKEDFD 85 (424)
T ss_dssp CCCCGGGSSCEEEECCHHHHHCTTCCSHHHHHTTHHHHHHTTCSEEEECCCEEECT-TCSTTEEEEEEC-GGGCCHHHHH
T ss_pred CcccccccCeEEEEcCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCC-CCCCcccccccC-ccCCCHHHHH
Confidence 456799999999998 5333367899999999999999999999999999999975 579999999999 9999999999
Q ss_pred HHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCC
Q 018278 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDH 174 (358)
Q Consensus 95 ~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 174 (358)
+||++||++||+||+|+|+||+| +|+ |+ ..
T Consensus 86 ~lv~~ah~~Gi~vilD~V~NH~s-~~~-------------------wF------------------------------~~ 115 (424)
T 2dh2_A 86 SLLQSAKKKSIRVILDLTPNYRG-ENS-------------------WF------------------------------ST 115 (424)
T ss_dssp HHHHHHHHTTCEEEEECCTTTTS-SST-------------------TC------------------------------SS
T ss_pred HHHHHHHHCCCEEEEEECCCcCC-Ccc-------------------cc------------------------------cc
Confidence 99999999999999999999998 543 21 01
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH--HHHHHH---HHhcCC-C-eEEEeccCCCCCCCCCCCCCCCCCc
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--SITKVY---MENTSP-D-FAVGEKWDSLSYGPDGKPDANQDGH 247 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--~~~~~~---~~~~~p-~-~~~gE~~~~~~~~~~~~~~~~~~~~ 247 (358)
++|+||+++++++++|++ +||||||+|++++++. +||+++ +++.+| . ++++|.+..
T Consensus 116 q~~~Vr~~~~~~~~~Wl~-~gvDGfRlD~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~---------------- 178 (424)
T 2dh2_A 116 QVDTVATKVKDALEFWLQ-AGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGTNSSD---------------- 178 (424)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCCEEEECCGGGSTTHHHHHHHHHHHHHHHCTTCEEEEECSCCC----------------
T ss_pred cCHHHHHHHHHHHHHHHH-cCCCEEEEeccccCCccHHHHHHHHHHHHHhCCCcEEEEEEecCC----------------
Confidence 358999999999999998 9999999999999976 477665 455555 3 456776532
Q ss_pred hhhHHHHHHhcCCceeeeccchHH-------HHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCC
Q 018278 248 RGALKDWVQAAGGAVAAFDFTTKG-------ILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF 320 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~df~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~ 320 (358)
...+.+|++.. ....|+|.+.. .+...+.. ...... . + .+ ..|+ |++|..+.+.
T Consensus 179 ~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~--~---~-~~---~~~~---d~~r~~s~~~- 239 (424)
T 2dh2_A 179 LQQILSLLESN--KDLLLTSSYLSDSGSTGEHTKSLVTQ----YLNATG--N---R-WC---SWSL---SQARLLTSFL- 239 (424)
T ss_dssp HHHHHHHTTTC--TTCEEECSTTTTCSSCHHHHHHHHHH----HHHHHT--T---C-CC---EECS---CSSCCGGGTS-
T ss_pred HHHHHHHhccc--cccccchhhhcCCCCCHHHHHHHHHH----HHHhhc--c---C-ce---eeee---cCcchhhhcC-
Confidence 34455555532 23456554321 11111111 000000 0 0 11 2344 5677766655
Q ss_pred CcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 321 PSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 321 ~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
+.++.++|.++++|+||+|+||||||+|+.++
T Consensus 240 ~~~~~k~~~~lllt~pG~P~iY~GeE~G~~~~ 271 (424)
T 2dh2_A 240 PAQLLRLYQLMLFTLPGTPVFSYGDEIGLDAA 271 (424)
T ss_dssp CHHHHHHHHHHHTTSSSEEEEETTGGGTCCGG
T ss_pred CHHHHHHHHHHHHHCCCCeEEEeceecCCcCC
Confidence 44678999999999999999999999999864
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-50 Score=397.75 Aligned_cols=285 Identities=21% Similarity=0.235 Sum_probs=200.1
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~ 100 (358)
+.+||+++. .+..+ +|||++|+++|+|||+||||+||||||++.+ .+|||++.|||+|+ ++|||.+||++||++|
T Consensus 136 ~~~iYe~~v-~~f~~-~G~~~~~~~~L~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~-~~~G~~~~~~~lv~~~ 212 (618)
T 3m07_A 136 QAVVYEMHT-GTFTP-EGTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPH-SAYGTPDDFKAFIDAA 212 (618)
T ss_dssp GCCEEEECH-HHHSS-SCSHHHHHTTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEEC-TTTCCHHHHHHHHHHH
T ss_pred hCeEEEEeh-hhcCC-CCCHHHHHHHHHHHHHcCCCEEEeCChhccCCCCCCCcCcccccccC-cCcCCHHHHHHHHHHH
Confidence 479999986 33322 5899999999999999999999999997654 58999999999999 9999999999999999
Q ss_pred HHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 018278 101 RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (358)
Q Consensus 101 H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~ 180 (358)
|++||+||+|+|+||++.+++.... +.+ .|.. ......| .++||++||+||
T Consensus 213 H~~Gi~VilD~V~NH~~~~~~~~~~----~~~-------~~~~---~~~~~~w---------------g~~ln~~~p~V~ 263 (618)
T 3m07_A 213 HGYGLSVVLDIVLNHFGPEGNYLPL----LAP-------AFFH---KERMTPW---------------GNGIAYDVDAVR 263 (618)
T ss_dssp HHTTCEEEEEECCSCCCSSSCCHHH----HCG-------GGEE---EEEEETT---------------EEEECTTSHHHH
T ss_pred HHCCCEEEEeecCccCCCCcccccc----cCc-------hhhc---CCCCCCC---------------CCCcCCCCHHHH
Confidence 9999999999999999987652110 000 0100 0000111 135999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEeeccCCCC----CHHHHHHHH---HhcC---CCeEEEeccCCCCCCCCCCCCCCCCCchhh
Q 018278 181 KELSDWMNWLKTEIGFDGWRFDFVKGY----APSITKVYM---ENTS---PDFAVGEKWDSLSYGPDGKPDANQDGHRGA 250 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~i----~~~~~~~~~---~~~~---p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~ 250 (358)
++|++++++|++++||||||+|+++++ +.+||+++. ++.. +++++||.|.+......... .
T Consensus 264 ~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~v~~~~p~~~~~li~E~~~~~~~~l~~~~-~-------- 334 (618)
T 3m07_A 264 RYIIEAPLYWLTEYHLDGLRFDAIDQIEDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISLHPRDQ-D-------- 334 (618)
T ss_dssp HHHHHHHHHHHHHTTCSEEEETTGGGCCCCSSSCHHHHHHHHHHHHCCSSCCEEEECCSSCCCTTSCCCT-T--------
T ss_pred HHHHHHHHHHHHHhCccEEEecchhhhcccchHHHHHHHHHHHHHhCCCCCEEEEEEecCCchhhhcccc-c--------
Confidence 999999999998899999999999999 888999884 3343 38899999976331110000 0
Q ss_pred HHHHHHhcCCceeeeccchHHHHHHHHcCchh------------h----hhhcC----------CCCCC--ccCCCCCce
Q 018278 251 LKDWVQAAGGAVAAFDFTTKGILQAAVQGELW------------R----LKDSN----------GKPPG--FIGILPQNA 302 (358)
Q Consensus 251 ~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~------------~----~~~~~----------~~~~~--~~~~~~~~~ 302 (358)
+..++.+..+++.++..+...+.++.. . +...+ ....+ .....+.+.
T Consensus 335 -----g~~g~~d~~~n~~~~~~l~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~f~~~g~~s~~~~~~~G~~~~~~~~~~~ 409 (618)
T 3m07_A 335 -----GNAPLFTAEWNDDFHNAVHVFATGETQAYYNDFADAPEKHLARALAEGFAYQGEISPQTGEPRGVKSTGQPPVAF 409 (618)
T ss_dssp -----SCCSSCSEEECHHHHHHHHHHHHCCCSGGGGGGCSCHHHHHHHHHHHSCSCSSCBCTTTSSBCCCCCTTSCGGGE
T ss_pred -----CCccccceeechhHHHHHHHHhcCCccchhhhcccCcHHHHHHHHHHhhccCcccccccccccCCccccCChhhh
Confidence 000012333333333333322221100 0 00000 00000 011245678
Q ss_pred eecccCCCC-------CcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 303 VTFIDNHDT-------GSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 303 v~f~~nHD~-------~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
++|++|||+ +|+.+.. ..++.++|++++|++||+|+||||||+|+..|+..
T Consensus 410 v~fl~NHD~~gnr~~G~Rl~~~~--~~~~~~~a~alllt~PG~P~iy~G~E~G~~~pf~~ 467 (618)
T 3m07_A 410 VDFIQNHDQVGNRAQGDRLITLA--GAERTKVLLATLLLSPHIPLLFMGEEYGESRPFLF 467 (618)
T ss_dssp EECSCCHHHHHTSTTCCCHHHHH--CHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCCC
T ss_pred eeeecccccccccccccchhhhc--CHHHHHHHHHHHHhCCCcCEEecchhhCCCCCccc
Confidence 999999999 6766543 35688999999999999999999999999987654
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=405.01 Aligned_cols=300 Identities=22% Similarity=0.383 Sum_probs=203.3
Q ss_pred CCceEEEeeecCCC---------CCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCC-------------------CC-CC
Q 018278 22 SPALLFQGFNWESS---------NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-------------------VA-PQ 72 (358)
Q Consensus 22 ~~~v~~q~F~~~~~---------~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-------------------~~-~~ 72 (358)
++.|||+++..+.. ..++|||+||+++|+|||+||||+||||||++. .+ +|
T Consensus 150 ~~~viYE~hv~~f~~~~~~~~~~~~~~Gt~~gi~~~L~yLk~LGvt~I~L~Pi~~~~~~~e~~~~~~~~~~~~~~~~~~w 229 (714)
T 2ya0_A 150 EDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNW 229 (714)
T ss_dssp GGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCC
T ss_pred cccEEEEEEehhhccCCCCccccccCCcCHHHHHHHhHHHHHcCCCEEEECCcccccccCcccccccccccccCcCcCcc
Confidence 45799998732111 123599999999999999999999999999973 11 49
Q ss_pred CCCccccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCC
Q 018278 73 GYMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144 (358)
Q Consensus 73 gY~~~d~~~id~~~~Gt--------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
||++.+||+|+ ++||+ .+|||+||++||++||+||||+|+||++..++ |.+..+ +|...
T Consensus 230 GY~~~~~~a~~-~~yg~~~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~--------~~~~~~----~yy~~ 296 (714)
T 2ya0_A 230 GYDPQNYFSLT-GMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDL--------FEDLEP----NYYHF 296 (714)
T ss_dssp SCSBSCSSSBC-STTSSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTBCSCHHH--------HHTTST----TTSBC
T ss_pred CCCCccCcccC-hhhccCCCCccchHHHHHHHHHHHHHCCCEEEEEeccCcccCccc--------ccccCC----CeeEE
Confidence 99999999999 99998 79999999999999999999999999998752 222111 11100
Q ss_pred cccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC
Q 018278 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP 221 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p 221 (358)
. +..+.... .+ ...++|+++|+||++|++++++|++++||||||||++++++.++|+++. ++.+|
T Consensus 297 ~---------~~~g~~~~--~~-~~~~l~~~~~~v~~~i~d~l~~W~~e~~vDGfR~D~~~~~~~~~~~~~~~~~~~~~p 364 (714)
T 2ya0_A 297 M---------DADGTPRT--SF-GGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNP 364 (714)
T ss_dssp B---------CTTCCBCE--ET-TEEBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCT
T ss_pred e---------CCCCCCcc--cc-CCCCcccCCHHHHHHHHHHHHHHHHhhCceEEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 0 00000000 00 0145999999999999999999999999999999999999999998774 44577
Q ss_pred -CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc---------C---chhhhhhcC
Q 018278 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ---------G---ELWRLKDSN 288 (358)
Q Consensus 222 -~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~---------~---~~~~~~~~~ 288 (358)
+++|||.|....-. .+... ......|.... .....|+..++..++..+. + .+..+...+
T Consensus 365 ~~~ligE~w~~~~g~-~~~~~------~~~~~~~~~~~-~~~~~f~d~~r~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 436 (714)
T 2ya0_A 365 NLIMLGEGWRTYAGD-ENMPT------KAADQDWMKHT-DTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNL 436 (714)
T ss_dssp TCEEEECCCSCCCCS-TTCCC------CBSSGGGGGGC-SSSEEECHHHHHHHHCCSSSTTCCCTTTTCCEEHHHHHHHH
T ss_pred CeEEEecccccccCc-ccccc------cccchhHHhcC-CCccccchHHHHHHhccCCcccchhhhcCCcccHHHHHHHH
Confidence 89999999742100 00000 00011222221 1233455555555543210 1 111222111
Q ss_pred -CCCCCccCCCCCceeecccCCCCCcCcCCC----CCC----------cchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 289 -GKPPGFIGILPQNAVTFIDNHDTGSTQRLW----PFP----------SDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 289 -~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~----~~~----------~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
..........|.++|+|++|||+.|+...+ ..+ .++.++|++++|++||+||||||||+|++++.
T Consensus 437 ~~~~~~~~~~~p~~~vnfv~nHD~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~la~~lll~~~G~P~i~~GdE~g~~~~~ 516 (714)
T 2ya0_A 437 IAQPTNFEADSPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQF 516 (714)
T ss_dssp TTCCTTSCCSSGGGEEECSCCSSSSCHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCCCBC
T ss_pred hcCccccCCCCHHHHhhHHHhCCCcchhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHCCCCcEEEechhhcccCCC
Confidence 111112223567899999999998864322 111 13778999999999999999999999998875
Q ss_pred C
Q 018278 354 N 354 (358)
Q Consensus 354 n 354 (358)
|
T Consensus 517 ~ 517 (714)
T 2ya0_A 517 R 517 (714)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-50 Score=397.40 Aligned_cols=287 Identities=17% Similarity=0.176 Sum_probs=202.7
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
++.+||+.+. .+..+ .|||++|+++|+|||+||||+||||||++++ .+|||++.|||+|+ ++|||.+||++||++
T Consensus 100 ~~~~iYe~~~-~~f~~-~G~~~~~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~~~~-~~~Gt~~d~~~lv~~ 176 (558)
T 3vgf_A 100 EDLIIYEIHV-GTFTP-EGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQ-NSYGGPEGFRKLVDE 176 (558)
T ss_dssp GGCCEEEECH-HHHSS-SCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEEC-GGGTHHHHHHHHHHH
T ss_pred cccEEEEEeH-HHhCC-CCCHHHHHHHHHHHHHcCCcEEEECCcccCCCCCCcCcccccccccc-cccCCHHHHHHHHHH
Confidence 3469999986 33322 5899999999999999999999999998865 47899999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCC-CCCCHH
Q 018278 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDI-DHLNPR 178 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl-n~~n~~ 178 (358)
||++||+||+|+|+||++.+++.... + ..|..... ...|.+ ..++ +.++|+
T Consensus 177 ~h~~Gi~VilD~V~NH~~~~~~~~~~----~--------~~~~~~~~---~~~~g~-------------~~n~~~~~~~~ 228 (558)
T 3vgf_A 177 AHKKGLGVILDVVYNHVGPEGNYMVK----L--------GPYFSQKY---KTPWGL-------------TFNFDDAESDE 228 (558)
T ss_dssp HHHTTCEEEEEECCSCCCSSSCCGGG----T--------SCCEEEEE---EETTEE-------------EECSSSTTHHH
T ss_pred HHHcCCEEEEEEeeccccCCCCcccc----c--------CCccCCCC---CCCCCC-------------cccCCCCCCHH
Confidence 99999999999999999987652110 0 00110000 001110 0012 235899
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeeccCCCC----CHHHHHHHHHh---cCCCeEEEeccCCCCCCCCCCCCCCCCCchhhH
Q 018278 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGY----APSITKVYMEN---TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 251 (358)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a~~i----~~~~~~~~~~~---~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~ 251 (358)
||++|++++++|++++||||||+|+++++ +.+||+++.+. .. ++++||.+.+. ...+
T Consensus 229 v~~~l~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~~~~~~-~~~iaE~~~~~---------------~~~~ 292 (558)
T 3vgf_A 229 VRKFILENVEYWIKEYNVDGFRLSAVHAIIDTSPKHILEEIADVVHKYN-RIVIAESDLND---------------PRVV 292 (558)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEESCGGGCCCCSSSCHHHHHHHHHHHTT-CEEEEECSSCC---------------GGGT
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecccccccccHHHHHHHHHHHHhhcC-EEEEEecCCCC---------------ccee
Confidence 99999999999998899999999999999 67899888543 34 88999998642 1112
Q ss_pred HHHHHhcCCceeeeccchHHHHHHHHcCchh----------hhhhc----CCCC------------CCccCCCCCceeec
Q 018278 252 KDWVQAAGGAVAAFDFTTKGILQAAVQGELW----------RLKDS----NGKP------------PGFIGILPQNAVTF 305 (358)
Q Consensus 252 ~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~----------~~~~~----~~~~------------~~~~~~~~~~~v~f 305 (358)
..+.....+++..+++.++..+...+.++.. .+... .... .......|.+.++|
T Consensus 293 ~~~~~~g~g~d~~~~~~~~~~l~~~~~~e~~~~~~d~~~~~~l~~~l~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~v~F 372 (558)
T 3vgf_A 293 NPKEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVY 372 (558)
T ss_dssp SCGGGTCCCCSEEECHHHHHHHHHHHHCCCSGGGGGCCCHHHHHHHHHHSCSCSSEEETTTTEEECCCCTTCCGGGEEEC
T ss_pred ccccCCCCceeeEEcHHHHHHHHHHhcCCccccccccccHHHHHHHHHhhhccccccchhhhcccCCCcccCChHHheee
Confidence 2222222345566777777766666543211 11110 0000 00001256788999
Q ss_pred ccCCCC--CcCcC-CC--CCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 306 IDNHDT--GSTQR-LW--PFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 306 ~~nHD~--~r~~~-~~--~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
++|||+ .|... +. ..+.++.++|++++||+||+|+||||+|+|+.+|+..
T Consensus 373 v~NHD~~gnr~~g~r~~~~~~~~~~~la~al~lt~pG~P~Iy~G~E~g~~~p~~~ 427 (558)
T 3vgf_A 373 IQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYIPMIFMGEEYGEENPFYF 427 (558)
T ss_dssp SCCHHHHHTSTTCCCGGGTSCHHHHHHHHHHHHTSSSEEEEETTGGGTCCSCCCC
T ss_pred eeccchhccccccccccccCCHHHHHHHHHHHHhCCCcceeecChhhcCCCCCcc
Confidence 999998 44321 11 1255688999999999999999999999999987653
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=387.85 Aligned_cols=302 Identities=19% Similarity=0.273 Sum_probs=205.2
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCCC--------CCCCCccccCCCCCCCCCCHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--------PQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~~--------~~gY~~~d~~~id~~~~Gt~~ 91 (358)
..+.||+|.|.|. |+.|++++ +||++||||+|||+|+.|+.. ++||+|.| |+|+ |+|||++
T Consensus 8 ~g~~~i~~~f~W~--------w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~d-y~i~-~~~Gt~~ 77 (496)
T 4gqr_A 8 QGRTSIVHLFEWR--------WVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVS-YKLC-TRSGNED 77 (496)
T ss_dssp TTCCEEEEETTCC--------HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSC-SCSC-BTTBCHH
T ss_pred CCCcEEEEecCCC--------HHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccC-ceeC-CCCCCHH
Confidence 3468999999994 99998876 799999999999999999631 36999999 5899 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCCCCcce---eeccCCCC-CCCCCCCCCccc-----CCCCccCC-CCCCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIY---CIFEGGTS-DDRLDWGPSFIC-----RGDKEYSD-GQGNDD 161 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~-~~~~~~ 161 (358)
|||+||++||++||+||+|+|+||++.+++...... ..+..... .+...|...... .......+ ......
T Consensus 78 df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (496)
T 4gqr_A 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQV 157 (496)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEEEETTSCSBSCBTTCCCBBTTTTBBTTTTBCGGGBSTTTCCSSSSBCCCTTCHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEccCcCCCccccccccCcCCcccccccccCCCCCCCccccCCCcccCCCCcccccCCccee
Confidence 999999999999999999999999999876322110 00110000 000000000000 00000000 000112
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcC----------C-CeEEEeccC
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS----------P-DFAVGEKWD 230 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~----------p-~~~~gE~~~ 230 (358)
..+++..+||||++||+||++|++++++|++ +||||||+|+|+|++.++|+++....+ + .++++|.+.
T Consensus 158 ~~~~~~~~~Dln~~n~~V~~~l~~~~~~~~~-~gvDGfR~D~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 236 (496)
T 4gqr_A 158 RDCRLTGLLDLALEKDYVRSKIAEYMNHLID-IGVAGFRLDASKHMWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVID 236 (496)
T ss_dssp HHSBGGGEEEBCTTSHHHHHHHHHHHHHHHH-HTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCC
T ss_pred EeeecCCCCccccCCHHHHHHHHHHHHHHHh-cCcceeecccccccchHHHHHHHHHHHhhccchhcccCcceEEeeeec
Confidence 2345678999999999999999999999997 999999999999999999999866432 2 578899886
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc-hhhhhhcCCCCCCccCCCCCceeecccCC
Q 018278 231 SLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGFIGILPQNAVTFIDNH 309 (358)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~f~~nH 309 (358)
... .. ...+. ......+++|.+...+..++... ...+..............+..+++|++||
T Consensus 237 ~~~-------~~--------~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Fv~NH 299 (496)
T 4gqr_A 237 LGG-------EP--------IKSSD--YFGNGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGFVPSDRALVFVDNH 299 (496)
T ss_dssp CSS-------SS--------CCGGG--GTTTSEEECHHHHHHHHHHHTTGGGCCGGGGGGTTGGGTCCCGGGEEECSCCT
T ss_pred cCc-------cc--------cchhh--hcCCCcccchhhHHHHHHHHhhccchhHHHHHhhhhhhccCCccceeeecccc
Confidence 421 00 00110 12345678888888888776432 11111111111112233467889999999
Q ss_pred CCCcCcCCCCC------CcchHHHHHHHHHcCC-CeeeeecCccccCC
Q 018278 310 DTGSTQRLWPF------PSDKVMLGYAYILTHP-GTPCIVISVTYPLF 350 (358)
Q Consensus 310 D~~r~~~~~~~------~~~~~~~a~a~l~~~p-G~P~IyyGdE~G~~ 350 (358)
|++|..+..+. ...+.++|++++++.| |+|+||+|.|.++.
T Consensus 300 D~~R~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~G~P~i~~g~~~~~~ 347 (496)
T 4gqr_A 300 DNQRGHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWPRQ 347 (496)
T ss_dssp TGGGSSSTTGGGCCCGGGHHHHHHHHHHHHHSCSSEEEEEECBCCCCC
T ss_pred cccccccccCCccccccCHHHHHHHHHHHHhccCCccceeeccccccc
Confidence 99998876532 2235567888888887 99999888776543
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=399.36 Aligned_cols=299 Identities=19% Similarity=0.241 Sum_probs=197.4
Q ss_pred CCCCceEEEeeec---CCCC----CCCCchHHHHhh--hhhHHHcCCCEEEeCCCCCCCC-----------CCCCCcccc
Q 018278 20 FTSPALLFQGFNW---ESSN----KAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSVA-----------PQGYMPGRL 79 (358)
Q Consensus 20 ~~~~~v~~q~F~~---~~~~----~~~G~~~gl~~~--L~yl~~LGv~~I~l~Pi~~~~~-----------~~gY~~~d~ 79 (358)
|.++.||||++.. ++.+ +++|||+||+++ |+|||+||||+||||||++++. +|||++.||
T Consensus 147 ~~~~~vIYei~v~~F~~~~~~~~~~~~G~~~gi~~~~~l~yL~~LGvt~i~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y 226 (657)
T 2wsk_A 147 PWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAM 226 (657)
T ss_dssp CGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHTSHHHHHHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCCEEEE
T ss_pred CchhcEEEEEEcceeeccCCCCCccCCcCHHHHhcccchHHHHHcCCCEEEECCccccCccccccccccccccCcCcccC
Confidence 4567899999852 2222 257999999999 9999999999999999999764 689999999
Q ss_pred CCCCCCCCC-----CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccC
Q 018278 80 YDLDASKYG-----SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (358)
Q Consensus 80 ~~id~~~~G-----t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (358)
++|+ ++|| |.+||++||++||++||+||||+|+||++.+++.... ..+.+... ..|...
T Consensus 227 ~~~~-~~~G~~p~~~~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~--~~~~~~~~---~~~y~~---------- 290 (657)
T 2wsk_A 227 FALH-PAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL--FSLRGIDN---RSYYWI---------- 290 (657)
T ss_dssp EEEC-GGGCSSGGGHHHHHHHHHHHHHHTTCEEEEEECCSCCTTCSTTSBC--CSHHHHHH---HHHBCB----------
T ss_pred CCCC-HHHcCCCCcCHHHHHHHHHHHHHCCCEEEEEEeecccccccccCcc--ccccCCCC---ccceEE----------
Confidence 9999 9999 5899999999999999999999999999988753110 00000000 001000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH--------HHHHHHHH-hcCC-CeE
Q 018278 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------SITKVYME-NTSP-DFA 224 (358)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------~~~~~~~~-~~~p-~~~ 224 (358)
+..+. ...+...+++||++||+||++|++++++|++++||||||||+|+++.+ ++++++.. ...| +++
T Consensus 291 ~~~~~--~~~~~~~~~~ln~~~p~v~~~i~d~~~~W~~e~gvDGfR~D~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~l 368 (657)
T 2wsk_A 291 REDGD--YHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKL 368 (657)
T ss_dssp CTTSS--BCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTTHHHHBSSSBCTTCHHHHHHHHCTTGGGSEE
T ss_pred CCCCC--eeCCCCcCCcccCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccccccccccchhHHHHHHHHhCcccCCcEE
Confidence 00000 011223457899999999999999999999999999999999988743 35665533 2334 889
Q ss_pred EEeccCCCC--CCCCCCC----CCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCC
Q 018278 225 VGEKWDSLS--YGPDGKP----DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL 298 (358)
Q Consensus 225 ~gE~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (358)
+||.|.... +...+.+ .|+ +.+++.++.|+.+... ....+...+.+....... ....
T Consensus 369 iaE~w~~~~~~~~~~~f~~~~~~~n-~~~~~~~~~~~~g~~~--------~~~~~~~~l~~~~~~y~~--------~~~~ 431 (657)
T 2wsk_A 369 IAEPWDIAPGGYQVGNFPPLFAEWN-DHFRDAARRFWLHYDL--------PLGAFAGRFAASSDVFKR--------NGRL 431 (657)
T ss_dssp EECCBCSSTTCBCTTCSCTTEEEEE-HHHHHHHHHHHHTSCS--------CHHHHHHHHBTTHHHHSS--------TTCC
T ss_pred EEccccCCCCcccccCCCccHHHHh-HHHHHHHHHHhccCCc--------hHHHHHHHHhcchhhhcc--------CCCC
Confidence 999987532 1111111 122 1123344444432210 011111111111110000 0124
Q ss_pred CCceeecccCCCCCcCcCCC-----------------------------CC---------CcchHHHHHHHHHcCCCeee
Q 018278 299 PQNAVTFIDNHDTGSTQRLW-----------------------------PF---------PSDKVMLGYAYILTHPGTPC 340 (358)
Q Consensus 299 ~~~~v~f~~nHD~~r~~~~~-----------------------------~~---------~~~~~~~a~a~l~~~pG~P~ 340 (358)
+...++|++|||+.++..+. +. ..++.++|++++|++||+|+
T Consensus 432 ~~~~~nf~~~HD~~~l~dl~~~~~~~~~~~g~~~~~g~~~~~s~n~~~~g~~~~~~~~~~~~~~~r~~~a~ll~~~G~P~ 511 (657)
T 2wsk_A 432 PSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPM 511 (657)
T ss_dssp GGGEEECSCCSSSCCHHHHTTCSSCCCGGGSSTTCSSCSCCCCCCTTSSSSCCCHHHHHHHHHHHHHHHHHHHHSBSEEE
T ss_pred ccceeehhhcCCCCcHHHHHHHHhhhhhhccccccCCcccccccccccccCCCchhHHHHHHHHHHHHHHHHHHcccCCE
Confidence 56789999999986432111 00 12357899999999999999
Q ss_pred eecCccccCCCCC
Q 018278 341 IVISVTYPLFHPL 353 (358)
Q Consensus 341 IyyGdE~G~~~~~ 353 (358)
||||||+|+.+..
T Consensus 512 iy~GdE~G~~~~g 524 (657)
T 2wsk_A 512 LLAGDEHGHSQHG 524 (657)
T ss_dssp EETTTTTTCCCTT
T ss_pred EEechhhccccCC
Confidence 9999999998643
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-49 Score=399.57 Aligned_cols=308 Identities=20% Similarity=0.258 Sum_probs=198.3
Q ss_pred CCceEEEeeecC---CC----CCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--------------CCCCCCccccC
Q 018278 22 SPALLFQGFNWE---SS----NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------------APQGYMPGRLY 80 (358)
Q Consensus 22 ~~~v~~q~F~~~---~~----~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--------------~~~gY~~~d~~ 80 (358)
+..+||+++... .. ...+|||++|+++|+|||+||||+||||||+++. ++|||++.||+
T Consensus 177 ~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~gl~~~l~yLk~LGvt~V~L~Pi~~~~~~~~~~~~~~~g~~~~wGY~~~dy~ 256 (750)
T 1bf2_A 177 KDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYF 256 (750)
T ss_dssp GGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSS
T ss_pred cccEEEEEEhhHhhCcCCCCCccCCcCHHHHHHHHHHHHHcCCCEEEECCcccCccccccccccccccccccCcCccccc
Confidence 558999998521 11 1247999999999999999999999999999975 35899999999
Q ss_pred CCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCcc
Q 018278 81 DLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153 (358)
Q Consensus 81 ~id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (358)
+|+ ++||| .+||++||++||++||+||||+|+||++..++.... +....+...|.... ......+
T Consensus 257 ~~~-~~yGt~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~------d~~~~p~~~~~~~d-~~~~y~~ 328 (750)
T 1bf2_A 257 SPD-RRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSS------DPTTATIYSWRGLD-NATYYEL 328 (750)
T ss_dssp CBC-GGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSS------CSSCBBCSSHHHHH-HHHHBCB
T ss_pred ccC-ccccCCCCCccHHHHHHHHHHHHHHCCCEEEEEEecccccCccccccc------ccccCCCcccccCC-CCcceEE
Confidence 999 99999 999999999999999999999999999988752210 00000001110000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHH-----------------------
Q 018278 154 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS----------------------- 210 (358)
Q Consensus 154 ~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~----------------------- 210 (358)
....+.+ ..+....++||++||+|+++|++++++|++++||||||||+|++++.+
T Consensus 329 ~~~~~~~--~~~~g~~~~ln~~~p~V~~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~f~~~~~~~~~~~~~~g~~~~~~~ 406 (750)
T 1bf2_A 329 TSGNQYF--YDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAA 406 (750)
T ss_dssp CTTSSSB--CCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGBCCSSSSCCTTSTTCTTCSCCBCTT
T ss_pred CCCCCce--ecCCCcCCccccCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhcCchhhhcccccccccccccccccccc
Confidence 0000011 112234578999999999999999999999999999999999988654
Q ss_pred -----HHHHHHHh-c---C--C-CeEEEeccCCCC--CCCCCC----CCCCCCCchhhHHHHHHhcCCceeeeccchHHH
Q 018278 211 -----ITKVYMEN-T---S--P-DFAVGEKWDSLS--YGPDGK----PDANQDGHRGALKDWVQAAGGAVAAFDFTTKGI 272 (358)
Q Consensus 211 -----~~~~~~~~-~---~--p-~~~~gE~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~ 272 (358)
|++.+... . . | +++|||.|.... ++..+. ..|| +.+++.++.++.+.. .+......
T Consensus 407 ~~~~~~~~~i~~~~~~~~~~g~~~~liaE~w~~~~~~~~~~~F~~~~~~wn-~~~rd~l~~f~~g~~-----~~~~~~~~ 480 (750)
T 1bf2_A 407 DSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFPQGWSEWN-GLFRDSLRQAQNELG-----SMTIYVTQ 480 (750)
T ss_dssp CTTSHHHHHHHHSCBCCTTCCSSBEEEECCCCSSTTCCCTTCSCTTCEEEC-HHHHHHHHHHHHCBT-----TBCCCHHH
T ss_pred cchHHHHHHHHhCcchhhccCCCceEEeccccCCccchhhccCCccHHHHh-HHHHHHHHHHhcCCC-----CCCCCHHH
Confidence 45554332 1 2 4 789999997532 111111 1222 222334444433200 00000111
Q ss_pred HHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCC--------------------------------
Q 018278 273 LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF-------------------------------- 320 (358)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~-------------------------------- 320 (358)
+...+.+....... ....|..+++|++|||+.|+..++..
T Consensus 481 l~~~l~~~~~~y~~--------~~~~p~~~vnfv~nHD~~~l~dl~s~~~~~n~~~~~~G~n~dG~~~n~s~n~g~~g~t 552 (750)
T 1bf2_A 481 DANDFSGSSNLFQS--------SGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGT 552 (750)
T ss_dssp HHHHHTTCHHHHGG--------GTCCGGGEEECSCCSSSCCHHHHTTCSSCCCCCCTTSCCCCCCCSCCCCCCTTTTTTS
T ss_pred HHHHhhcchhhhcc--------CCCCcceEEEEeecCCCCcHHHHHhhhcccchhhhhccCCCCCccccccccccccCCc
Confidence 11111111100000 01246788999999999875322110
Q ss_pred -----CcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 321 -----PSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 321 -----~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
..++.++|++++|++||+||||||||+|.+...
T Consensus 553 ~~~~~r~~~~r~a~a~ll~~~G~P~i~~GdE~g~t~~G 590 (750)
T 1bf2_A 553 GAAVDQRRAARTGMAFEMLSAGTPLMQGGDEYLRTLQC 590 (750)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCTT
T ss_pred hhhHHHHHHHHHHHHHHHHcCCcceeeechhhccCCCC
Confidence 013578999999999999999999999988543
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=399.44 Aligned_cols=303 Identities=19% Similarity=0.310 Sum_probs=205.1
Q ss_pred CCCceEEEeeecCCCC---------CCCCchHHHHhhhhhHHHcCCCEEEeCCCCCC------------------CC-CC
Q 018278 21 TSPALLFQGFNWESSN---------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS------------------VA-PQ 72 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~---------~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~------------------~~-~~ 72 (358)
.++.|||+++..+... ++.|||++|+++|+|||+||||+||||||++. .+ +|
T Consensus 265 ~~~~vIYElhvr~ft~~~~~~~~~~~~~Gt~~gl~~~L~yLk~LGvtaV~L~Pi~~~~~~~e~~~~~~~~~~~~~~~ynw 344 (877)
T 3faw_A 265 RQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNW 344 (877)
T ss_dssp GGGCEEEEECTTGGGCCGGGTTTCSSCTTSHHHHGGGHHHHHHHTCSEEEESCCBCBSSCBTTCCCCCCSCCSSSCSCCC
T ss_pred ccccEEEEEEchHhcCCCCCCccccCCCCCHHHHHHHHHHHHHcCCCEEEEcchhcccccccccccccccccCCCCCCcc
Confidence 3457999998643221 12499999999999999999999999999973 12 39
Q ss_pred CCCccccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCC
Q 018278 73 GYMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144 (358)
Q Consensus 73 gY~~~d~~~id~~~~Gt--------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
||++.+|++|+ ++||| .+||++||++||++||+||||+|+||++..++ |.+..+ .|...
T Consensus 345 GY~~~~~~a~~-~~yGt~p~~~~~~~~efk~lV~~~H~~GI~VILDvV~NH~a~~~~--------~~~~~p----~yy~~ 411 (877)
T 3faw_A 345 GYDPQSYFALS-GMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYL--------FEDIEP----NYYHF 411 (877)
T ss_dssp SCSBSCSSSBC-STTCSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCTHH--------HHTTST----TTSBC
T ss_pred CcCcCcccccc-ccccCCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeeccccCccc--------cccCCC----ceeee
Confidence 99999999999 99999 79999999999999999999999999998763 322111 11100
Q ss_pred cccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC
Q 018278 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP 221 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p 221 (358)
.+..+..... ...++||+++|+||++|++++++|++++||||||||++++++.++|++++ ++.+|
T Consensus 412 ---------~~~dg~~~~~---~~g~~ln~~~p~Vr~~i~d~l~~Wv~e~gVDGFRfD~a~~~~~~~~~~~~~~~~~~~P 479 (877)
T 3faw_A 412 ---------MNEDGSPRES---FGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGDHDAAAIELAYKEAKAINP 479 (877)
T ss_dssp ---------BCTTSCBCEE---TTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCT
T ss_pred ---------eCCCCCeecc---CCCcccccCCHHHHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHHHHHHhhCC
Confidence 0000000000 01256999999999999999999999999999999999999999998884 44577
Q ss_pred -CeEEEeccCCCC----CCCC-CC---CCCCC--CCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcC-C
Q 018278 222 -DFAVGEKWDSLS----YGPD-GK---PDANQ--DGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSN-G 289 (358)
Q Consensus 222 -~~~~gE~~~~~~----~~~~-~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~-~ 289 (358)
++++||.|.... +... .. ..|+. ..+.+.+++++.+.........|.. .-..++..+...+ .
T Consensus 480 ~~~ligE~Wd~~~g~~~~~~~~~~~~~~~~~~~i~~f~d~iR~~~rg~~~~~~~~gf~~------g~~~~l~~~~~~l~~ 553 (877)
T 3faw_A 480 NMIMIGEGWRTFQGDQGKPVKPADQDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFIT------GGPQSLQGIFKNIKA 553 (877)
T ss_dssp TCEEEECCCSCCCCBTTBCCCBSSGGGGGGCSSEEEECHHHHHHHHCCTTCTTCCCGGG------TCCEEHHHHHHHHTT
T ss_pred CcEEEEcccccccccccccccccchhhhhcCCccchhhHHHHHHHccccccccchhhhc------CCcHHHHHHHHHhhc
Confidence 889999998421 0000 00 11110 1134555555543210000000000 0000111111111 1
Q ss_pred CCCCccCCCCCceeecccCCCCCcCcCCCCCC------------cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 290 KPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP------------SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 290 ~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~------------~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
.........|..+|+||+|||+.|+..++... .++.++|++++|+++|+||||+|||+|.++..|
T Consensus 554 ~~~~~~~~~P~~sVnFV~nHD~~tl~Dlls~~~k~n~~~~~~~~~~r~~lA~alllls~GiP~i~~GdE~grs~~gn 630 (877)
T 3faw_A 554 QPGNFEADSPGDVVQYIAAHDNLTLHDVIAKSINKDPKVAEEDIHRRLRLGNVMILTSQGTAFIHSGQEYGRTKRLL 630 (877)
T ss_dssp CCSSSCCSSGGGEEECSCCSSSSCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTSSSEEEEETTTTTTCCCBCC
T ss_pred CccccccCCccceeeeeecccchhHHhhhhhhhcCCcccCHHHHHHHHHHHHHHHHhcCCccccccchhhhcccCCC
Confidence 11111123578899999999998866544211 246789999999999999999999999988764
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-48 Score=387.56 Aligned_cols=291 Identities=19% Similarity=0.200 Sum_probs=199.9
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
..+||+++. .+..+ +|||++|+++| +|||+||||+||||||++++. +|||++.||++|+ ++|||.+||++||++
T Consensus 245 ~~~IYE~h~-~s~~~-~G~~~~l~~~l~~yLk~lG~t~I~L~Pi~e~~~~~~wGY~~~~y~a~~-~~yGt~~dfk~lV~~ 321 (722)
T 3k1d_A 245 AMSTYEVHL-GSWRP-GLSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPT-SRFGTPDDFRALVDA 321 (722)
T ss_dssp CCEEEEECT-TTSST-TCCHHHHHHHHHHHHHHHTCSEEEESCCEECSCGGGTTCSCSEEEEEC-GGGCCHHHHHHHHHH
T ss_pred CeEEEEEeh-hhccC-CCCHHHHHHHHHHHHHHcCCCeEEECCcccCCCCCCCCCCcccCcCcc-ccCCCHHHHHHHHHH
Confidence 459999986 55544 59999999998 999999999999999999874 6999999999999 999999999999999
Q ss_pred HHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 018278 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v 179 (358)
||++||+||+|+|+||++.+... ...|.+ ..... . .+..... ...+ +.++||+++|+|
T Consensus 322 ~H~~GI~VilD~V~NH~~~~~~~----~~~fdg-~~~y~--~------------~d~~~~~--~~~W-g~~~ln~~~p~V 379 (722)
T 3k1d_A 322 LHQAGIGVIVDWVPAHFPKDAWA----LGRFDG-TPLYE--H------------SDPKRGE--QLDW-GTYVFDFGRPEV 379 (722)
T ss_dssp HHHTTCEEEEEECTTCCCCCTTT----TTTTTS-SCCSB--C------------CCCCSSS--TTCC-CCCCBCTTSHHH
T ss_pred HHHcCCEEEEEEEeeccCCccch----hhcCCC-Ccccc--c------------CCcccCc--cCCC-CCeeecCCCHHH
Confidence 99999999999999999876320 001111 10000 0 0000000 0011 225699999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeeccCCCC------------------------CHHHHHHH---HHhcCC-CeEEEeccCC
Q 018278 180 QKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKWDS 231 (358)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~---~~~~~p-~~~~gE~~~~ 231 (358)
|++|++++++|++++||||||+|+++++ +.+||+++ +++.+| +++|||.+.+
T Consensus 380 r~~l~~~~~~Wl~~~gvDGfR~Dav~~mly~d~~r~~g~w~~n~~gg~~n~~~~~fl~~l~~~v~~~~P~~~~iaE~~t~ 459 (722)
T 3k1d_A 380 RNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEGGWTPNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTP 459 (722)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCTHHHHBCCCCCCSSCCSCCCSSCSBCHHHHHHHHHHHHHHHHHSTTCEEEECCCSS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcchhhhhhccccccccccccccCCCccChHHHHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 9999999999999999999999999876 35788887 455677 8999998864
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhhhcCCCCCCccCCCCCceeecccCCC
Q 018278 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 310 (358)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD 310 (358)
.+ .. .........+++..+++.++..+...+.. ...+................ ...+++.|||
T Consensus 460 ~p-------~v--------~~~~~~gGlGfd~~wn~~~~~d~l~y~~~~~~~r~~~~~~lt~~~~ya~~-e~f~l~~sHD 523 (722)
T 3k1d_A 460 WS-------GV--------TRPTNIGGLGFSMKWNMGWMHDTLDYVSRDPVYRSYHHHEMTFSMLYAFS-ENYVLPLSHD 523 (722)
T ss_dssp CC-------CT--------TSCGGGTCCCCSEEECHHHHHHHHHHHHSCGGGGGGGHHHHHGGGGTTTS-SCEEEEECGG
T ss_pred Cc-------cc--------ccccccCCCccccccccchHHHHHHHHhcCchhhhhhhhccchhhhhhcc-cceecccCcc
Confidence 21 11 11111112344555565554433333322 11110000000000111111 2256789999
Q ss_pred CC-----cCcCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 311 TG-----STQRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 311 ~~-----r~~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
+. |+.+....+ .+++++++++||++||+|+||||+|+|+..+.+
T Consensus 524 ~~~~Gk~~ll~~~~gd~~~~~a~lr~~~a~~lt~PG~plif~G~E~G~~~e~~ 576 (722)
T 3k1d_A 524 EVVHGKGTLWGRMPGNNHVKAAGLRSLLAYQWAHPGKQLLFMGQEFGQRAEWS 576 (722)
T ss_dssp GSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCC
T ss_pred hhccCccchhhhCCCcHHHHHHHHHHHHHHHHhCCCeeEEecccccccccccc
Confidence 97 555555444 347889999999999999999999999987654
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=403.68 Aligned_cols=300 Identities=22% Similarity=0.383 Sum_probs=201.5
Q ss_pred CCceEEEeeecCCC---------CCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCC-------------------CC-CC
Q 018278 22 SPALLFQGFNWESS---------NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-------------------VA-PQ 72 (358)
Q Consensus 22 ~~~v~~q~F~~~~~---------~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~-------------------~~-~~ 72 (358)
++.|||+++..+.. ....|||+||+++|+|||+||||+||||||+++ .+ +|
T Consensus 457 ~~~vIYE~hv~~ft~~~~~~~~~~~~~Gt~~gl~~~LdyLk~LGvtaV~L~Pv~~~~~~~e~~~~~~~~~y~~~~~~ynw 536 (1014)
T 2ya1_A 457 EDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNW 536 (1014)
T ss_dssp GGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCC
T ss_pred cccEEEEEecCCCCCCCCccccccCCCcCHHHHHHHhHHHHHcCCCeEEecCcccccccccccccccccccccCcCCccc
Confidence 34799998732111 123599999999999999999999999999973 11 49
Q ss_pred CCCccccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCC
Q 018278 73 GYMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144 (358)
Q Consensus 73 gY~~~d~~~id~~~~Gt--------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
||++.+||+++ ++||+ .+|||+||++||++||+||||+|+||++..+. |.+..+ .|...
T Consensus 537 GY~~~~y~a~~-~~ygt~p~~~~~~~~efk~lV~~~H~~GI~VIlDvV~NHt~~~~~--------~~~~~~----~yy~~ 603 (1014)
T 2ya1_A 537 GYDPQNYFSLT-GMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDL--------FEDLEP----NYYHF 603 (1014)
T ss_dssp SCSBSCSSSBC-STTCSCTTCTTHHHHHHHHHHHHHHTTTCEEEEEECTTCCSCHHH--------HHTTST----TTSBC
T ss_pred CCCcCcCcccc-ccccCCCccccchHHHHHHHHHHHHHcCCEEEEEEeccccccccc--------cccCCC----CeeEE
Confidence 99999999999 99998 79999999999999999999999999998653 222111 11100
Q ss_pred cccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC
Q 018278 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP 221 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p 221 (358)
. +..+.... .+ ...++|+++|+||++|++++++|++++||||||||++++++.++|+++. ++.+|
T Consensus 604 ~---------~~~g~~~~--~~-~~~~l~~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p 671 (1014)
T 2ya1_A 604 M---------DADGTPRT--SF-GGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNP 671 (1014)
T ss_dssp B---------CTTCCBCE--ET-TEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCT
T ss_pred e---------CCCCCccc--CC-CCCCcCcCCHHHHHHHHHHHHHHHHhcCceEEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 0 00000000 00 0145999999999999999999999999999999999999999998873 44577
Q ss_pred -CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc---------C---chhhhhhcC
Q 018278 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ---------G---ELWRLKDSN 288 (358)
Q Consensus 222 -~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~---------~---~~~~~~~~~ 288 (358)
+++|||.|....-. .+... ......|+... .....|+..++..++..+. + .+..+...+
T Consensus 672 ~~~ligE~W~~~~g~-~~~~~------~~~~~~w~~~~-~~~~~f~d~~r~~l~~~~~~~~~~~~~~g~~~~~~~l~~~l 743 (1014)
T 2ya1_A 672 NLIMLGEGWRTYAGD-ENMPT------KAADQDWMKHT-DTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNL 743 (1014)
T ss_dssp TCEEEECCCSCCCCS-TTCCC------CBSSGGGGGGC-SSSEEECHHHHHHHSCCTTSTTCCCTTTTCCEEHHHHHHHH
T ss_pred CeEEEEeecccccCc-ccccc------cccccchhhcC-CcccchhHHHHHHHhcccccccchhhhccCcccHHHHHHHH
Confidence 89999999742100 00000 00011222211 1233455554444432110 0 111121111
Q ss_pred -CCCCCccCCCCCceeecccCCCCCcCcCCC----CCC----------cchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 289 -GKPPGFIGILPQNAVTFIDNHDTGSTQRLW----PFP----------SDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 289 -~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~----~~~----------~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
..........|.++|+|++|||+.|+...+ ..+ .++.++|++++|++||+||||||||+|++++.
T Consensus 744 ~~~~~~~~~~~p~~~vnfv~nHD~~~l~d~v~~~~~~~~~~~~~~~~~~~~~rla~~lll~spGiP~i~~GdE~g~t~~~ 823 (1014)
T 2ya1_A 744 IAQPTNFEADSPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQF 823 (1014)
T ss_dssp TTCCSSSCCSSGGGEEECSCCSSSSCHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHTSSSEEEEETTTTTTCCCBC
T ss_pred hcCccccccCChhhheEeeecCCCCcccchhhhhccCCcccchhhHHHHHHHHHHHHHHHhCCCCcEEEechhhcccCCC
Confidence 111112223577899999999998864322 111 13778999999999999999999999998775
Q ss_pred C
Q 018278 354 N 354 (358)
Q Consensus 354 n 354 (358)
|
T Consensus 824 ~ 824 (1014)
T 2ya1_A 824 R 824 (1014)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=388.38 Aligned_cols=291 Identities=15% Similarity=0.182 Sum_probs=197.2
Q ss_pred CCceEEEeeecCCC-CCCCCchHHHHh-hhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 22 SPALLFQGFNWESS-NKAGGWYNSLKN-SIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 22 ~~~v~~q~F~~~~~-~~~~G~~~gl~~-~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
...+||+++..... .++.|||++|++ +|+|||+||||+||||||++++ ++|||++.|||+|+ |+|||++||++||
T Consensus 179 ~~~~IYE~hv~~~~~~~~~Gt~~~l~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~a~~-~~~Gt~~df~~lv 257 (755)
T 3aml_A 179 DAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVS-SRSGTPEDLKYLV 257 (755)
T ss_dssp SSCEEEEEESTTCSSSSSCCCHHHHHHHTHHHHHHTTCCEEEEESCEECSCGGGTTCSCSEEEEEC-GGGCCHHHHHHHH
T ss_pred CCCEEEEEeeeccccCCCCCCHHHHHHHHHHHHHHcCCCEEEECchhcCCCCCCCCCccCCCCccC-CCCCCHHHHHHHH
Confidence 45799999973322 234699999988 7999999999999999999987 68999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 018278 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~ 177 (358)
++||++||+||||+|+||++.+++.... .|..+. .....|... +... +. ..+ ..++||++||
T Consensus 258 ~~~H~~Gi~VilD~V~NH~~~~~~~g~~---~fd~~~-~~~~~yf~~----~~~g-------~~--~~w-~~~~lN~~~p 319 (755)
T 3aml_A 258 DKAHSLGLRVLMDVVHSHASNNVTDGLN---GYDVGQ-NTHESYFHT----GDRG-------YH--KLW-DSRLFNYANW 319 (755)
T ss_dssp HHHHHTTCEEEEEECCSCBCCCTTTSGG---GGCSSC-CGGGSSBCC----GGGG-------EE--TTT-TEECBCTTSH
T ss_pred HHHHHCCCEEEEEEeccccccccccchh---ccccCC-CCCcceeec----CCCC-------cc--CCC-CCceeccCCH
Confidence 9999999999999999999998752211 121100 000111110 0000 00 011 2467999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEeeccCCCC--------------------------CHHHHHHH---HHhcCC-CeEEEe
Q 018278 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY--------------------------APSITKVY---MENTSP-DFAVGE 227 (358)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i--------------------------~~~~~~~~---~~~~~p-~~~~gE 227 (358)
+||++|++++++|++++||||||||+++++ ..+||+.+ +++..| +++|||
T Consensus 320 ~V~~~l~~~l~~Wl~e~gvDGfR~Dav~~m~~~~~g~~~~f~~~~~~~~~~~~~~~ai~fl~~~~~~v~~~~p~~~lIaE 399 (755)
T 3aml_A 320 EVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAE 399 (755)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEETTHHHHHBTTTTTTCCCCSCGGGTSSTTBCHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecchhhhhhcccCcccccccccccccccccchhHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 999999999999999999999999999743 11456554 556677 899999
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC------chhhhhhcCCCCCCccCCCCCc
Q 018278 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG------ELWRLKDSNGKPPGFIGILPQN 301 (358)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 301 (358)
.|.+.+ . ....+..+.-+++..+++.+...+...+.+ ....+...+.. ...+.+
T Consensus 400 ~~~~~p-------~--------~~~~~~~gglgFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~-----~~~~~~ 459 (755)
T 3aml_A 400 DVSGMP-------V--------LCRPVDEGGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTN-----RRYTEK 459 (755)
T ss_dssp CSSCCT-------T--------TTSCGGGTSCCCSEEECTTHHHHHHHHHHHCCGGGCCHHHHHHHHHC-----SCTTSC
T ss_pred ccCCCc-------c--------ceeeccCCCccccccccccchHHHHHHHhhCCccccCHHHHHHHHHh-----ccCchh
Confidence 986522 1 111121111111222222233333333221 11222222111 024567
Q ss_pred eeecccCCCCCcCcCCC-----------------CC-------CcchHHHHHHHHHcCCCeeee-ecCccccCCC
Q 018278 302 AVTFIDNHDTGSTQRLW-----------------PF-------PSDKVMLGYAYILTHPGTPCI-VISVTYPLFH 351 (358)
Q Consensus 302 ~v~f~~nHD~~r~~~~~-----------------~~-------~~~~~~~a~a~l~~~pG~P~I-yyGdE~G~~~ 351 (358)
.++|++|||+.|..... .. ..++.++|.++++++||+|+| |||+|+|+.+
T Consensus 460 ~vnf~~nHD~~r~g~~~~~f~l~d~~~~~~~~~l~~~~~~~~~~~~~~k~a~~~llt~pG~P~lly~G~E~G~~~ 534 (755)
T 3aml_A 460 CIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPE 534 (755)
T ss_dssp EEECSCCCCTTSCCCBCHHHHHHTTHHHHSCBSSSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETTGGGTCCS
T ss_pred heehhhcCCccccccccccccccchhhhhhhhhccccchhhhhhHHHHHHHHHHHHHCCCCEEEEeCchhcCCcC
Confidence 89999999998874321 00 124678999999999999977 9999999975
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=386.25 Aligned_cols=190 Identities=22% Similarity=0.307 Sum_probs=143.6
Q ss_pred eEEEeeec---CCCCC----CCCchHHHHh-------hhhhHHHcCCCEEEeCCCCCC------C---------------
Q 018278 25 LLFQGFNW---ESSNK----AGGWYNSLKN-------SIPDLSNAGITHVWLPPPSQS------V--------------- 69 (358)
Q Consensus 25 v~~q~F~~---~~~~~----~~G~~~gl~~-------~L~yl~~LGv~~I~l~Pi~~~------~--------------- 69 (358)
|||+++.. .++++ .+|||+|+++ +|+||++||||+||||||++. +
T Consensus 425 vIYE~hvr~ft~~~~~~~~~~~Gt~~g~~e~~~~~i~~L~~L~~lGvt~i~LlPv~~~~~v~e~~~~~~~~~~p~~~~~~ 504 (1083)
T 2fhf_A 425 TIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCE 504 (1083)
T ss_dssp EEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGCCCTTSBHHHHHH
T ss_pred EEEEEecchhcCCCCCCCcCCCCChhhhhhhhhhhHHHHHHHHhcCCCEEEECCcccccccccccccccccccccccccc
Confidence 99999742 22222 3699999977 699999999999999999852 1
Q ss_pred ------------------------------------------------C--CCCCCccccCCCCCCCCCC-------HHH
Q 018278 70 ------------------------------------------------A--PQGYMPGRLYDLDASKYGS-------QAD 92 (358)
Q Consensus 70 ------------------------------------------------~--~~gY~~~d~~~id~~~~Gt-------~~d 92 (358)
. +|||++.|||+|+ ++||| ++|
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~d~~nwGYd~~~y~a~~-~~yGt~p~~~~r~~e 583 (1083)
T 2fhf_A 505 VNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPE-GSYATDPEGTARIKE 583 (1083)
T ss_dssp HCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEEC-STTSSCCSTTHHHHH
T ss_pred cccccccccccccccccccchhhhhcccccccchhhhhhhhhccccccCCCCCCCCcCcCCCcC-hhhcCCCCccccHHH
Confidence 1 3999999999999 99999 899
Q ss_pred HHHHHHHHHHc-CCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCC
Q 018278 93 LKSLIQAFRQK-GIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPD 171 (358)
Q Consensus 93 ~~~Lv~~~H~~-Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (358)
||+||++||++ ||+||||+|+||++..|+.....+ +....+ .|.... + . ..+.+.. +....+
T Consensus 584 fk~LV~~~H~~~GI~VILDvV~NHt~~~~~~~~~~~--~d~~~p----~yy~~~---~--p---~~g~~~~---~tg~~d 646 (1083)
T 2fhf_A 584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSV--LDKIVP----WYYQRL---N--E---TTGSVES---ATCCSD 646 (1083)
T ss_dssp HHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCC--HHHHST----TTSBCB---C--T---TTCCBCC---TTSSEE
T ss_pred HHHHHHHHHhhcCCEEEEEeccccCcCCCccchhcc--ccCCCC----Cceeec---C--C---CCCceec---CCccCC
Confidence 99999999998 999999999999999875321110 111000 111000 0 0 0011111 112246
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC-CeEEEeccCCC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGEKWDSL 232 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p-~~~~gE~~~~~ 232 (358)
+|++||+||++|++++++|+++|||||||||++++++.++|.+++ ++.+| ++++||.|...
T Consensus 647 ln~~~p~Vr~~i~d~l~~W~~e~gVDGfR~D~a~~~~~~~~~~~~~~l~~~~p~~~ligE~w~~~ 711 (1083)
T 2fhf_A 647 SAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGEGWDSN 711 (1083)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHTTCTTCEEEECCCCCS
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCCcEEEEeCcccCCHHHHHHHHHHHHHhCCCeEEEEeeccCc
Confidence 899999999999999999999999999999999999999998864 45677 88999999764
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=352.24 Aligned_cols=314 Identities=16% Similarity=0.187 Sum_probs=193.7
Q ss_pred CCceEEEeee----c---CCCCCCCCchHHH-------HhhhhhHHHcCCCEEEeCCCCCCC------------------
Q 018278 22 SPALLFQGFN----W---ESSNKAGGWYNSL-------KNSIPDLSNAGITHVWLPPPSQSV------------------ 69 (358)
Q Consensus 22 ~~~v~~q~F~----~---~~~~~~~G~~~gl-------~~~L~yl~~LGv~~I~l~Pi~~~~------------------ 69 (358)
...|||+.-. . +.+.+..|+|.|+ +++|+|||+||||+||||||++++
T Consensus 251 ~~~vIYE~HVr~ft~~~~~~~~~~~Gtf~g~~~~~~~~ie~L~yLk~LGVtaveLmPv~e~~~~~~~~~~~~~~d~~~l~ 330 (884)
T 4aio_A 251 SDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELA 330 (884)
T ss_dssp GGCCEEEECHHHHHTTCTTSCTTTTTSGGGGSCTTSHHHHHHHHHHHHTCCEEEECCCEEESSSCSCGGGCCCCCHHHHT
T ss_pred ccCEEEEEEcCccccCCCCCCccccCcccccccchhhHHHHhHHHHHcCCCEEEeccccccCcccccccccccccccccc
Confidence 4478998752 1 2233457999876 788999999999999999999864
Q ss_pred ---------------------CCCCCCccccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccccCC
Q 018278 70 ---------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (358)
Q Consensus 70 ---------------------~~~gY~~~d~~~id~~~~Gt-------~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~ 121 (358)
.+|||++.+||+++ ++||| .++||+||++||++||+||||+|+||++.+|+
T Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~WGYd~~~y~a~~-~~ygt~~d~~~~~~efk~LV~~aH~~GIkVIlDvV~NHts~~h~ 409 (884)
T 4aio_A 331 TFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPK-GSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGP 409 (884)
T ss_dssp TSCTTCSHHHHHHHHHTTTSSCCCCCCEEEEEEEC-GGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECCSBCSCCSS
T ss_pred ccCCchHHHHhhhhhhhhccccccCcCcccccCCC-cccccCccccchHHHHHHHHHHHHhcCCceeeeeccccccCCCc
Confidence 26999999999999 99999 45699999999999999999999999999987
Q ss_pred CCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEee
Q 018278 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~ 201 (358)
+..... +....++ ..|.. +.++ .. .......++|+++|+|++++++.+++|+++++|||||+
T Consensus 410 wf~~~~--~~~~~~~--~~~~~---------~~~~--~~---~~~~~~~~~~~~~~~v~~~~~d~~~~w~~~~~vDg~R~ 471 (884)
T 4aio_A 410 CGISSV--LDKIVPG--YYVRR---------DTNG--QI---ENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRF 471 (884)
T ss_dssp SSTTCC--HHHHSTT--TSBCB---------CTTS--CB---CCTTSSSBBCTTSHHHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred chhhcc--ccccCcc--eeecc---------CCCC--Cc---cCcCCccccCCCCchhhhhhhhhhhhhhhhcccccCCc
Confidence 322100 0000000 00000 0000 00 01122345899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHh------------cCCCeEEEeccCCCCCC----------CCCCCCCCCCCchhhHHHHHHhcC
Q 018278 202 DFVKGYAPSITKVYMEN------------TSPDFAVGEKWDSLSYG----------PDGKPDANQDGHRGALKDWVQAAG 259 (358)
Q Consensus 202 D~a~~i~~~~~~~~~~~------------~~p~~~~gE~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 259 (358)
|.+..+..+.+...... .....+++|.|...... ....+. .-..+.+.++..+....
T Consensus 472 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~-~i~e~nd~~r~~v~~~~ 550 (884)
T 4aio_A 472 DLMGHIMKRTMMRAKSALQSLTTDAHGVDGSKIYLYGEGWDFAEVARNQRGINGSQLNMSGT-GIGSFNDRIRDAINGGN 550 (884)
T ss_dssp TTGGGSBHHHHHHHHHHHHTCCHHHHSSCGGGCEEEECCCCCGGGGGGTTSSBCCTTTTTTS-SCEEEEHHHHHHHHCSC
T ss_pred ccchhhhhHHHHhhhhhcccccccccccccccceecccCCcccccccccccccchhccCCcc-cchhhhhhHHhhhhccc
Confidence 99999988765444221 11256899988652110 000000 00111223333322110
Q ss_pred ----Cceeeecc------------c----------hHHHHHHHHcCchhhh--hhc------------CCCCCCccCCCC
Q 018278 260 ----GAVAAFDF------------T----------TKGILQAAVQGELWRL--KDS------------NGKPPGFIGILP 299 (358)
Q Consensus 260 ----~~~~~~df------------~----------~~~~l~~~~~~~~~~~--~~~------------~~~~~~~~~~~~ 299 (358)
.....+.. . ....+.....+.+... ... ...........|
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 630 (884)
T 4aio_A 551 PFGNPLQQGFNTGLFLEPNGFYQGNEADTRRSLATYADQIQIGLAGNLRDYVLISHTGEAKKGSEIHTFDGLPVGYTASP 630 (884)
T ss_dssp TTSCTTCCCTTTTTTTSCCSSCCCCHHHHHHHHHHHHHHHHHHHBTCBSSCEEECTTSCEEETTTSBCTTSCBSCCBSSG
T ss_pred cccchhhhhhccccccchhhhhccccchhhhhhhhhhhhhhhccCcchhhhhccccchhhccchhhhhhcccchhhccCc
Confidence 00000000 0 0011111112211110 000 000000111235
Q ss_pred CceeecccCCCCCcCcCCCCC----------CcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 300 QNAVTFIDNHDTGSTQRLWPF----------PSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 300 ~~~v~f~~nHD~~r~~~~~~~----------~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
...++|++|||+.|..+.++. ..++.++|++++||+||+||||||||+|+++..|.
T Consensus 631 ~~~~nfl~NHD~~r~~~~~~~~~~~~~~~~~r~~r~kla~alllt~pG~P~IY~GdEiG~t~~~~~ 696 (884)
T 4aio_A 631 IETINYVSAHDNETLFDVISVKTPMILSVDERCRINHLASSMMALSQGIPFFHAGDEILRSKSIDR 696 (884)
T ss_dssp GGEEECSCCSSSSCHHHHHHHHSCTTSCHHHHHHHHHHHHHHHHTSBSEEEEETTGGGTCCCTTCS
T ss_pred hhhcccccCCCCCcccccccccccccccHHHHHHHHHHHHHHHHHcCCCcEEEcccccCccCCCCc
Confidence 567899999999886554321 12467899999999999999999999999877664
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=311.86 Aligned_cols=187 Identities=14% Similarity=0.158 Sum_probs=142.2
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+|||+||+++|+|||+||||+|||+||+++. ++|||++.||++|| |+|||++||++||++||++||+||+|+|+||+
T Consensus 13 gGtf~gi~~~LdYLk~LGVtaIwLsPi~~~~~gs~hGYdv~Dy~~Id-p~lGt~edfk~LV~aaH~~GIkVIlDvV~NHt 91 (720)
T 1iv8_A 13 NFNFGDVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRIN-DELGGEKEYRRLIETAHTIGLGIIQDIVPNHM 91 (720)
T ss_dssp TBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEEC-TTTTHHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCcccCCCCCCCCCCCccCCCcC-ccCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 7999999999999999999999999999975 68999999999999 99999999999999999999999999999999
Q ss_pred c--ccCC-----------CCCcceeeccCCCCC---C--CC-------------CCCCC-----cc---cC--CC-----
Q 018278 117 T--AERK-----------DGRGIYCIFEGGTSD---D--RL-------------DWGPS-----FI---CR--GD----- 150 (358)
Q Consensus 117 ~--~~~~-----------~~~~~~~~~~~~~~~---~--~~-------------~~~~~-----~~---~~--~~----- 150 (358)
+ .+|+ .+..+|+.+.+.... + .. .|... .+ +. ..
T Consensus 92 a~~~~~~wf~d~l~~G~~s~y~d~f~~~~~~g~~~~P~~g~~yg~~l~~g~l~~~~d~g~~~~~Yy~~~fp~~~~~~~l~ 171 (720)
T 1iv8_A 92 AVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIY 171 (720)
T ss_dssp ECCTTCHHHHHHHHHGGGSTTGGGBCBCTTCSSEEEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEEEECSCCCSSHH
T ss_pred cCccccHHHHHhhhcccccccccceeecCCCCcccCCcccccccccccccceeeeecCCCcchhhccccCCcCccccchh
Confidence 9 5542 123344444221000 0 00 00000 00 00 00
Q ss_pred ----------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC--CHHHHHHHHHh
Q 018278 151 ----------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMEN 218 (358)
Q Consensus 151 ----------~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~~ 218 (358)
..|... .|+.....+..++|||++||+|++++++++++| ||||||+|+++++ +.+||+++.+.
T Consensus 172 ~~~~~q~yrl~~W~~~-lNyr~f~d~~~L~dLn~enP~V~~~i~d~l~~W----GVDGFRiDaa~~L~~p~~f~~~lr~~ 246 (720)
T 1iv8_A 172 DTLQKQNYTLMSWKNP-PSYRRFFDVNTLIGVNVEXDHVFQESHSXILDL----DVDGYRIDHIDGLYDPEKYINDLRSI 246 (720)
T ss_dssp HHHTTSSEEEEETTSC-CSBCEETTEEEEEEBCTTSHHHHHHHTTTGGGS----CCSEEEETTGGGCSCHHHHHHHHHHH
T ss_pred hhhhccceeccccccc-ccccccccccCCcccccCcHHHHHHHHHHHHhc----CCCEEEEechhhhcChHHHHHHHHHH
Confidence 000000 122222234578999999999999999999999 9999999999999 78999999887
Q ss_pred cCCCeEEEeccCC
Q 018278 219 TSPDFAVGEKWDS 231 (358)
Q Consensus 219 ~~p~~~~gE~~~~ 231 (358)
.+|++++||.|..
T Consensus 247 v~p~~ligE~~~~ 259 (720)
T 1iv8_A 247 IKNXIIIVEKILG 259 (720)
T ss_dssp HTTCEEEECCCCC
T ss_pred hccceEEeeccCC
Confidence 7788899999975
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=282.39 Aligned_cols=187 Identities=16% Similarity=0.204 Sum_probs=144.5
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+|||++++++|+||++|||++|||+||+++. ++|||++.||++|+ |+|||++||++||++||++||+||+|+|+||+
T Consensus 11 gGtf~~i~~~LdyL~~LGvt~V~LsPi~e~~~~s~~GYd~~Dy~~vd-p~lGt~edfk~LV~~aH~~GI~VilDvV~NH~ 89 (704)
T 3hje_A 11 PMKFSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTIN-DELGGEEEYIRLIDEAKSKGLGIIQDIVPNHM 89 (704)
T ss_dssp SCCHHHHHTTHHHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEEC-GGGTHHHHHHHHHHHHHHHTCEEEEEECCSEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCccCCCCCCCCCCCcCCCCcC-ccCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Confidence 6999999999999999999999999999875 68999999999999 99999999999999999999999999999999
Q ss_pred cc--cCC-----------CCCcceeeccCCCC--C----CCCCC--CC------------CcccCCC-------------
Q 018278 117 TA--ERK-----------DGRGIYCIFEGGTS--D----DRLDW--GP------------SFICRGD------------- 150 (358)
Q Consensus 117 ~~--~~~-----------~~~~~~~~~~~~~~--~----~~~~~--~~------------~~~~~~~------------- 150 (358)
+. +|+ .+..+|+.|..... . ....| .. .+.-...
T Consensus 90 s~~~~~~wf~d~l~~g~~s~Y~d~F~W~~~~g~v~~P~lg~~~~~y~~~l~~G~i~lY~d~~Pl~p~~~~~~~~l~~l~~ 169 (704)
T 3hje_A 90 AVHHTNWRLMDVLKKGRHSRYYNYFDFYEEEEKIRIPILGDRNFKITYVNDEPYLDYYGNLFPINDEGRNYLNDIEKLLK 169 (704)
T ss_dssp ECSTTCHHHHHHHHHGGGSGGGGGBCBCTTCSSEEEEEESSCCCEEEEETTEEEEEETTEEEECCTTGGGCTTCHHHHHH
T ss_pred ccccchHHHHHHHhcCCCCCCCccccccCCCCceecCcCCCCcccccccccCCceeeccccCCCCcccccccchhhhhhh
Confidence 97 332 12334555432100 0 00011 00 0000000
Q ss_pred ------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC--CHHHHHHHHHhcCCC
Q 018278 151 ------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTSPD 222 (358)
Q Consensus 151 ------~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~~~~p~ 222 (358)
..|... .++...+...+++|||++||+|++++.+.+.+| ||||||+|+++++ |..+|+++.....+.
T Consensus 170 ~Q~Yrl~~w~~~-~nyrRff~l~~L~dLn~e~p~V~~~i~~~L~~L----GVdGFRvDaadgL~DP~~yl~rLr~~~~~~ 244 (704)
T 3hje_A 170 VQYYELVDWRDY-PSYRRFFAVNELIAVRQELEWVFEDSHSKILSF----EVDGYRIDHIDGLFKPEEYLRRLKNKIGNK 244 (704)
T ss_dssp TSSEEEEETTSC-CSBCEETTEEEEEEBCTTSHHHHHHHHTTGGGS----CCSEEEETTGGGCSSHHHHHHHHHHHHTTC
T ss_pred hhhhhhcccccc-cccccccccCCchhccCCCHHHHHHHHHHHHHc----CCCEEEEeCcCcccCHHHHHHHHHHhCCCc
Confidence 001111 344555666788999999999999999999999 9999999999999 889999988766668
Q ss_pred eEEEeccCC
Q 018278 223 FAVGEKWDS 231 (358)
Q Consensus 223 ~~~gE~~~~ 231 (358)
++++|.+..
T Consensus 245 ~iv~EkIl~ 253 (704)
T 3hje_A 245 HIFVEKILS 253 (704)
T ss_dssp EEEECCCCC
T ss_pred EEEEEEeCC
Confidence 999999865
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=245.67 Aligned_cols=172 Identities=19% Similarity=0.304 Sum_probs=124.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEeeccCCCCCHHHHHHHHH---hc--C--------
Q 018278 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITKVYME---NT--S-------- 220 (358)
Q Consensus 163 ~~~~~~~~dln~~n~~v~~~l~~~~~~w~~---------~~gvDGfR~D~a~~i~~~~~~~~~~---~~--~-------- 220 (358)
++.+..+||||++||+||++++++++||++ ++||||||+|+|+|++.+||+++.+ +. .
T Consensus 186 ~y~l~~~~DLN~~NP~Vr~~l~~~~~~Wl~~~~i~~~~~~~GIDGFRlDAvkhv~~df~~~~~~~l~~~~~~~~~~~~~~ 265 (844)
T 3aie_A 186 GYEFLLANDVDNSNPVVQAEQLNWLHFLMNFGNIYANDPDANFDSIRVDAVDNVDADLLQIAGDYLKAAKGIHKNDKAAN 265 (844)
T ss_dssp CCSCCSSEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSCCCEEEETTGGGSCTHHHHHHHHHHHHHHCTTTBHHHHH
T ss_pred ceeeCCccccCCCCHHHHHHHHHHHHHHhhccccccccccCCCCEEEEehhhcCCHHHHHHHHHHHHHHhcccccccccC
Confidence 345667799999999999999999999998 8999999999999999999999854 22 2
Q ss_pred CCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc------Cchhhhhhc-CCC-CC
Q 018278 221 PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ------GELWRLKDS-NGK-PP 292 (358)
Q Consensus 221 p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~------~~~~~~~~~-~~~-~~ 292 (358)
++|+|||+|+. . ..+|+...++..++|||+++..+...+. +++..+... ... .+
T Consensus 266 d~~~VGEvw~~-----------------~-~~~Y~~~~~~~~~vfDFpl~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~p 327 (844)
T 3aie_A 266 DHLSILEAWSY-----------------N-DTPYLHDDGDNMINMDNRLRLSLLYSLAKPLNQRSGMNPLITNSLVNRTD 327 (844)
T ss_dssp TSCCEECCCST-----------------T-HHHHHHHHTSSSBEECHHHHHHHHHHTTSCGGGCCCSTHHHHSSSSCCSE
T ss_pred CeEEEEecCCC-----------------C-hHHHhhcCCCcceeeChHHHHHHHHHHHhhccCHHhHHHHHHHHHHhhCc
Confidence 47899999964 1 1578776667788999999888876552 234444332 110 00
Q ss_pred CccCCCCCceeecccCCCCCcC---cCC-------------CCC---------------------CcchHHHHHHHHHcC
Q 018278 293 GFIGILPQNAVTFIDNHDTGST---QRL-------------WPF---------------------PSDKVMLGYAYILTH 335 (358)
Q Consensus 293 ~~~~~~~~~~v~f~~nHD~~r~---~~~-------------~~~---------------------~~~~~~~a~a~l~~~ 335 (358)
..........++|++|||++|. .++ ++. ...+.++|+|+||++
T Consensus 328 ~~~~~~~~~~~tFldNHDt~R~~Ri~s~l~~~~~~~~~g~~~~~d~~~~~le~~~~~~~~~~k~y~~~~~~lA~AllLt~ 407 (844)
T 3aie_A 328 DNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINPNVVGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNTALSYALLLTN 407 (844)
T ss_dssp ECCSSCSSCEEECSCCSSTTTHHHHHHHHHHHTCTTCCTTCCCHHHHHHHHHHHHHHHHCSSCSSSCSCHHHHHHHHTTC
T ss_pred ccccccceeeEEEeeCCcCCCccchhhhhccccccccccccccchhhhhhhhhhhhhhhccccccchhHHHHHHHHHHHh
Confidence 0000011126899999999884 210 110 001157799999999
Q ss_pred C-CeeeeecCccccCCCC
Q 018278 336 P-GTPCIVISVTYPLFHP 352 (358)
Q Consensus 336 p-G~P~IyyGdE~G~~~~ 352 (358)
| |+|+||||||+|+.+.
T Consensus 408 ~~GiP~IYYGdEiGm~G~ 425 (844)
T 3aie_A 408 KSSVPRVYYGDMFTDDGQ 425 (844)
T ss_dssp SSSEEEEEHHHHBCSSSS
T ss_pred CCCCceEEeccccCCCCC
Confidence 8 9999999999999864
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-26 Score=233.44 Aligned_cols=176 Identities=20% Similarity=0.282 Sum_probs=126.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEeeccCCCCCHHHHHHHHHh---c-C------
Q 018278 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITKVYMEN---T-S------ 220 (358)
Q Consensus 160 ~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~---------~~gvDGfR~D~a~~i~~~~~~~~~~~---~-~------ 220 (358)
...++.+..++|||++||+||++|+++++||++ ++||||||+|||+||+.+||++++++ . .
T Consensus 235 ~~g~~d~l~l~DLN~~NPeVr~el~~~~~~Wld~g~w~~~~~e~GVDGFRLDAVkhI~~dFl~ef~~~l~~~~~~~~~~~ 314 (1039)
T 3klk_A 235 NYGGAEFLLANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIRVDAVDNVDVDLLSIARDYFNAAYNMEQSDA 314 (1039)
T ss_dssp SCCSCSCCSSEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSSCCEEEETTGGGSCTHHHHHHHHHHHHHHCGGGCHH
T ss_pred ccCCcccccccccCCCCHHHHHHHHHHHHHHHhhccccccccccCCCEEEEehhhcCCHHHHHHHHHHHHHHhccccccc
Confidence 345678899999999999999999999999998 89999999999999999999998543 1 1
Q ss_pred ---CCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc------hhhhhhc-CCC
Q 018278 221 ---PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE------LWRLKDS-NGK 290 (358)
Q Consensus 221 ---p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~------~~~~~~~-~~~ 290 (358)
++++|||+|.. ....|+...+....+++|+++..+..++... +..+... ...
T Consensus 315 ~a~d~f~VGEvw~~------------------~~~~Yl~~~~~~~s~~Dfpl~~~l~~a~~~~~~~~~dL~~l~~~~l~~ 376 (1039)
T 3klk_A 315 SANKHINILEDWGW------------------DDPAYVNKIGNPQLTMDDRLRNAIMDTLSGAPDKNQALNKLITQSLVN 376 (1039)
T ss_dssp HHTTSCCEECCCCT------------------THHHHHHHTTCSSBEECHHHHHHHHHHTSSCTTTCCCTTHHHHSSSSC
T ss_pred ccCCeEEEEecCCC------------------CHHHHHhccCCccceechHHHHHHHHHhcccccchhhHHHHHHHHHHh
Confidence 37899999964 1257888776678899999998888877432 2233221 100
Q ss_pred -CCCccCCCCCceeecccCCCCCcC------cCCC-----------------------------CCCcchHHHHHHHHHc
Q 018278 291 -PPGFIGILPQNAVTFIDNHDTGST------QRLW-----------------------------PFPSDKVMLGYAYILT 334 (358)
Q Consensus 291 -~~~~~~~~~~~~v~f~~nHD~~r~------~~~~-----------------------------~~~~~~~~~a~a~l~~ 334 (358)
.+..........++|++|||++|. .+.+ ........+|+|++|+
T Consensus 377 ~~~~~a~~~~~~~vtFVdNHDt~R~~~i~~~is~~~~~~~l~~t~~~~~~al~~y~~d~~~~~k~y~~~~k~lAyAllLl 456 (1039)
T 3klk_A 377 RANDNTENAVIPSYNFVRAHDSNAQDQIRQAIQAATGKPYGEFNLDDEKKGMEAYINDQNSTNKKWNLYNMPSAYTILLT 456 (1039)
T ss_dssp CTEECCSSCSCCEEEESCBTTBTTHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHHTSSSCSSSCSCHHHHHHHHHH
T ss_pred cCCccccccccccceEeeCCcCCCcccccccccccccccccccchhhhhhhhhhhcccccccchhhhhhhHHHHHHHHHH
Confidence 000000112345899999999873 0000 0001125678888877
Q ss_pred C-CCeeeeecCccccCCCCC
Q 018278 335 H-PGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 335 ~-pG~P~IyyGdE~G~~~~~ 353 (358)
+ ||+|+||||||+|+.+..
T Consensus 457 ~~~GtP~IYYGDeyG~~G~~ 476 (1039)
T 3klk_A 457 NKDSVPRVYYGDLYQDGGQY 476 (1039)
T ss_dssp CSSCEEEEEHHHHBCSSBST
T ss_pred cCCCeEEEEechhcCCCCCC
Confidence 6 999999999999998743
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-24 Score=216.62 Aligned_cols=97 Identities=26% Similarity=0.370 Sum_probs=87.1
Q ss_pred CCceEEEeeecCCCCCCC---CchHHHHhhhhhHHHcCCCEEEeCCCCCCC---------CCCCCCccccCC----CCCC
Q 018278 22 SPALLFQGFNWESSNKAG---GWYNSLKNSIPDLSNAGITHVWLPPPSQSV---------APQGYMPGRLYD----LDAS 85 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~---G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~---------~~~gY~~~d~~~----id~~ 85 (358)
.+.||||.|.|.++.+++ +++++|+++|||||+||||+|||+||++++ .++||++.|+|+ |+ |
T Consensus 829 ds~Vi~QgF~W~~~~~g~~w~~Ty~~I~~kLdYLk~LGITaIwL~Pi~~s~~~~~~~~~~~d~GYdi~D~y~lGf~i~-~ 907 (1108)
T 3ttq_A 829 DSNLIYEGFSNFQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTP-T 907 (1108)
T ss_dssp HTCCEEECCCTTCCCCSSGGGSHHHHHHHTHHHHHHHTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSSSSC-C
T ss_pred CCceEEEeEECCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEECCCccCCCccccccccccCCcccccccccCcCCC-C
Confidence 348999999999987632 344499999999999999999999999986 378999999988 69 9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
+|||++||++||++||++||+||+|+|+||++..
T Consensus 908 ~yGt~edfk~LV~alH~~GI~VIlDvV~NHta~~ 941 (1108)
T 3ttq_A 908 KYGTDGDLRATIQALHHANMQVMADVVDNQVYNL 941 (1108)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEeccccccCC
Confidence 9999999999999999999999999999999744
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-24 Score=215.29 Aligned_cols=98 Identities=29% Similarity=0.483 Sum_probs=85.3
Q ss_pred CCCceEEEeee-cCCCCCCCCch--HHHHhhhhhHHHcCCCEEEeCCCCCCCC---------CCCCCccccCCCC---CC
Q 018278 21 TSPALLFQGFN-WESSNKAGGWY--NSLKNSIPDLSNAGITHVWLPPPSQSVA---------PQGYMPGRLYDLD---AS 85 (358)
Q Consensus 21 ~~~~v~~q~F~-~~~~~~~~G~~--~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---------~~gY~~~d~~~id---~~ 85 (358)
.++.||||+|. |.+....++.+ +||+++|+|||+||||+|||+||++++. +|||++.|||+|+ +|
T Consensus 608 ~~~~ViYe~f~~~~s~~~~g~~~~~~gi~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~GY~~~d~~~i~es~~~ 687 (844)
T 3aie_A 608 LDSRVMFEGFSNFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPN 687 (844)
T ss_dssp HHTCCEEECCCTTCCCCSSGGGCHHHHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCB
T ss_pred cCceEEEEeCCCcccCCCCCCcccHHHHHHHHHHHHHCCCCeEEECCcccCCCCCccccccCCCCCccccCccCCCCCCC
Confidence 35589999998 54443323334 9999999999999999999999999873 6999999999987 26
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 86 ~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+|||++||++||++||++||+||+|+|+||++.
T Consensus 688 ~~Gt~~df~~lv~~~H~~GI~VilD~V~NH~~~ 720 (844)
T 3aie_A 688 KYGTADDLVKAIKALHSKGIKVMADWVPDQMYA 720 (844)
T ss_dssp TTBCHHHHHHHHHHHHHTTCEEEEEECCSEECC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEccCcccC
Confidence 999999999999999999999999999999974
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-23 Score=214.23 Aligned_cols=98 Identities=24% Similarity=0.363 Sum_probs=86.5
Q ss_pred CCCceEEEeeec--CC-CCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC---------CCCCCCccccCC----CCC
Q 018278 21 TSPALLFQGFNW--ES-SNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---------APQGYMPGRLYD----LDA 84 (358)
Q Consensus 21 ~~~~v~~q~F~~--~~-~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~---------~~~gY~~~d~~~----id~ 84 (358)
..+.|||+.|.+ .. +....|+|++|+++|+|||+||||+||||||++++ .+|||++.|||+ ++
T Consensus 661 l~~~VIYEGFt~~~~~~~~~~~gt~~gi~~kldyLk~LGVtaIwL~Pi~~~~~~~~~~~~~~~~GYd~~d~~~~~~~i~- 739 (1039)
T 3klk_A 661 LDSNVIYEGFSNFIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDLGMSTP- 739 (1039)
T ss_dssp HHTCCEEECCCTTBCCCSSGGGCHHHHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSC-
T ss_pred cCCcEEEccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECccccCCcccccccCcCCCCCCcccccccccCCC-
Confidence 456899999942 22 22236999999999999999999999999999985 689999999995 78
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
++|||++||++||++||++||+||+|+|+||++..
T Consensus 740 ~~~Gt~~efk~lV~alH~~GI~VIlDvV~NHta~~ 774 (1039)
T 3klk_A 740 NKYGSDEDLRNALQALHKAGLQAIADWVPDQIYNL 774 (1039)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccCCcCCC
Confidence 99999999999999999999999999999999754
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-15 Score=149.22 Aligned_cols=168 Identities=19% Similarity=0.189 Sum_probs=114.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------HhcCCCeEeeccCCCCCHHHHHHHH---Hh----------cC
Q 018278 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLK---------TEIGFDGWRFDFVKGYAPSITKVYM---EN----------TS 220 (358)
Q Consensus 163 ~~~~~~~~dln~~n~~v~~~l~~~~~~w~---------~~~gvDGfR~D~a~~i~~~~~~~~~---~~----------~~ 220 (358)
+..+....|+|.+||+||++++.++.|++ ++.++||||+|||+|+..++++.+. ++ ..
T Consensus 405 ~ye~Ll~nDvDnsnP~Vqae~lnw~~~l~n~g~i~~~~~~~nfdG~RvDAvdnvdad~l~~~~~~~~~~yg~~~~~~~a~ 484 (1108)
T 3ttq_A 405 AFDFLLANDVDNSNPVVQAENLNWLHYLMNFGTITAGQDDANFDSIRIDAVDFIHNDTIQRTYDYLRDAYQVQQSEAKAN 484 (1108)
T ss_dssp SCCCCSSEEECTTSHHHHHHHHHHHHHHHTHHHHHHSCTTSSCCEEEETTGGGSCHHHHHHHHHHHHHHHCTTSBHHHHT
T ss_pred CeeeEeecccccCChHHHHHHHHHHHHHhhcccccccCCCCCCceEEEechhccCHHHHHHHHHHHHHHhCCCccchhhh
Confidence 45667788999999999999999999999 7899999999999999999987763 21 23
Q ss_pred CCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc------hhhhhhc------C
Q 018278 221 PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE------LWRLKDS------N 288 (358)
Q Consensus 221 p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~------~~~~~~~------~ 288 (358)
..|.|+|.|+.. ...|+. . ...||++++..+...+... +..+.+. +
T Consensus 485 ~h~si~E~W~~~------------------~~~~~~-~---~~l~D~~l~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~l 542 (1108)
T 3ttq_A 485 QHISLVEAGLDA------------------GTSTIH-N---DALIESNLREAATLSLTNEPGKNKPLTNMLQDVDGGTLI 542 (1108)
T ss_dssp TSCCEESCSTTC------------------HHHHTT-T---CSBEECSHHHHHHHHTSSCTTSCCCGGGGSEEEETTEEE
T ss_pred cceEEEeeccCC------------------cchhcc-C---ccccchHHHHHHHHHhcCcccccccHHHHhhccccccee
Confidence 468899999641 123443 1 2248999988887665322 3333211 0
Q ss_pred -CCCCCccCCCCCceeecccCCCCCc---Cc--------C------------------------CCCCCcchHHHHHHHH
Q 018278 289 -GKPPGFIGILPQNAVTFIDNHDTGS---TQ--------R------------------------LWPFPSDKVMLGYAYI 332 (358)
Q Consensus 289 -~~~~~~~~~~~~~~v~f~~nHD~~r---~~--------~------------------------~~~~~~~~~~~a~a~l 332 (358)
.+.+......+...++||.|||+.- +. . .-.+..-...+|+|+|
T Consensus 543 v~r~~~~~~~~a~pn~sFV~aHDs~~q~~i~~ii~~~~~~~~~~~t~~~~~qa~~~y~~d~~~~~k~y~~~~~PlAYAlI 622 (1108)
T 3ttq_A 543 TDHTQNSTENQATPNYSIIHAHDKGVQEKVGAAITDATGADWTNFTDEQLKAGLELFYKDQRATNKKYNSYNIPSIYALM 622 (1108)
T ss_dssp EECTEECCSSCSCCEEECSCCSSTTTHHHHHHHHHHHSCCBTTBCCHHHHHHHHHHHHHHHTSSSCSSSCSCHHHHHHHH
T ss_pred eccccccccCccccceEEEecccchhhhhHHHHHhhcccccccccCHHHHHHHHHhhhhhhhhhhhcccccccHHHHHHH
Confidence 1111111123445689999999741 00 0 0011122456899999
Q ss_pred HcC-CCeeeeecCccccCCCC
Q 018278 333 LTH-PGTPCIVISVTYPLFHP 352 (358)
Q Consensus 333 ~~~-pG~P~IyyGdE~G~~~~ 352 (358)
|+. .|+|||||||.||..+.
T Consensus 623 Llrk~g~PcVfygDlY~~~g~ 643 (1108)
T 3ttq_A 623 LTNKDTVPRMYYGDMYQDDGQ 643 (1108)
T ss_dssp HHCSSCEEEEEGGGTBCTTSS
T ss_pred HhccCCcceeeehhhcCCCCc
Confidence 998 69999999999998643
|
| >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.5e-07 Score=90.33 Aligned_cols=137 Identities=15% Similarity=0.059 Sum_probs=91.1
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCC-CCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ-GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~-gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
|-+.|.+.++.++++|+..+.|=--+.....+ --..-|+ .+|+.+|- +.|+.||+++|++||++.+-+.+..++.+
T Consensus 345 tee~il~~ad~~~~~G~e~fviDDGW~~~r~~d~~~~Gdw-~~d~~kFP--~Gl~~lv~~ih~~Glk~glW~~Pe~v~~d 421 (745)
T 3mi6_A 345 NEAKLMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDW-FVDQRKFP--DGIEHFSQAVHQQGMKFGLWFEPEMVSVD 421 (745)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTCBTTCSSTTSCTTCC-SBCTTTCT--THHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHHcCCcEEEECcccccCCCCCcccCCCc-eeChhhcC--ccHHHHHHHHHHCCCEEEEEEcccccCCC
Confidence 45778888899999999998885544322111 0112232 34424554 35999999999999999999999887766
Q ss_pred CCC--CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 120 RKD--GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 120 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
++- ...+|..-.++ +... ....+.-||++||+|++++.+.++.+++++|||
T Consensus 422 S~l~~~hPdw~l~~~~------------------------g~~~---~~r~~~vLD~tnPevr~~i~~~l~~ll~~~GID 474 (745)
T 3mi6_A 422 SDLYQQHPDWLIHAPK------------------------STPT---PGRHQFVLDMARPEVVDYLFKLMSQMIESANLD 474 (745)
T ss_dssp SSHHHHCGGGBCCCTT------------------------CCCC---CSSSCEEBCTTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHhCcceEEEcCC------------------------Ccee---ecCCeEEECCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 531 01122211100 0000 011233499999999999999999999889999
Q ss_pred eEeeccCCCC
Q 018278 198 GWRFDFVKGY 207 (358)
Q Consensus 198 GfR~D~a~~i 207 (358)
||.+|+-..+
T Consensus 475 y~K~D~nr~i 484 (745)
T 3mi6_A 475 YIKWDMNRYA 484 (745)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999985544
|
| >2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-07 Score=93.51 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=89.1
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
|-+.|.+.++.++++|++.|.|=--+-... ++--...|+ .+++.+|. +.++.|++++|++|||+.+.+.+..++.+
T Consensus 344 ~e~~i~~~ad~~~~~G~~~~viDDgW~~~r~~~~~~~Gdw-~~d~~kFP--~Glk~lvd~ih~~Glk~GlW~~P~~v~~~ 420 (720)
T 2yfo_A 344 TGDTIVDLAKEAASLGIDMVVMDDGWFGKRNDDNSSLGDW-QVNETKLG--GSLAELITRVHEQGMKFGIWIEPEMINED 420 (720)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSSSBTTCSSTTSCTTCC-SBCHHHHT--SCHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHHcCCcEEEECcccccCCCcccccCCCC-eeChhhcC--ccHHHHHHHHHHCCCEEEEEecccccCCC
Confidence 467888899999999999998854432211 110111222 24412444 24999999999999999999999887665
Q ss_pred CCC--CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 120 RKD--GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 120 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
++- ...+|..-.++ +... ....+..||++||+|++++.+.+..+++++|||
T Consensus 421 S~l~~~hpdw~~~~~~------------------------~~~~---~~~~~~~LD~t~Pea~~~~~~~l~~l~~~~GID 473 (720)
T 2yfo_A 421 SDLYRAHPDWAIRIQG------------------------KKPV---RSRNQLLLDFSRKEVRDCVFDQICVVLDQGKID 473 (720)
T ss_dssp SHHHHHCGGGBCCCTT------------------------SCCC---CBTTBEEBCTTSHHHHHHHHHHHHHHHTTSCCC
T ss_pred CHHHHhCcceEEECCC------------------------cCcc---cCCceEEECCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 420 01112211100 0000 001233499999999999999999999889999
Q ss_pred eEeeccCCCC
Q 018278 198 GWRFDFVKGY 207 (358)
Q Consensus 198 GfR~D~a~~i 207 (358)
+|.+|....+
T Consensus 474 y~K~D~n~~~ 483 (720)
T 2yfo_A 474 YVKWDMNRSM 483 (720)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCc
Confidence 9999985433
|
| >2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=8e-06 Score=82.72 Aligned_cols=135 Identities=12% Similarity=0.031 Sum_probs=87.5
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
|-+.+.+.++.++++|++.|.|==-+... ..+--...|+ .+++.+|.+ .++.|++.+|++|||+.+-+.+..++.+
T Consensus 348 ~ee~v~~~ad~~~~~G~~~~viDDGW~~~r~~~~~~~Gd~-~~d~~kFP~--Glk~lv~~ih~~Glk~GlW~~P~~v~~~ 424 (732)
T 2xn2_A 348 NEDKLKTIVDKAKKLGLEMFVLDDGWFGHRDDDNSSLGDW-KVYKKKFPN--GLGHFADYVHEQGLKFGLWFEPEMISYE 424 (732)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECSSSBTTCSSTTSCTTCC-SBCTTTCTT--CHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCccccCce-eeCchhcCc--cHHHHHHHHHHcCCEEEEEeCccccCCC
Confidence 46778888999999999999873222111 1110011233 456235743 5999999999999999999988766554
Q ss_pred CCC--CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 120 RKD--GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 120 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
++- ...+|..-..+ ....| ...+.-||+.||+|++++.+.+..+++++|||
T Consensus 425 S~l~~~hpdw~~~~~g---~~~~~------------------------~~~~~~LD~t~Pev~~~i~~~l~~~~~~~GVD 477 (732)
T 2xn2_A 425 SNLYKEHPDYLXHVPG---RKPCP------------------------SRNQYVLELGRKEVRDNIFEQMVKILDSKKID 477 (732)
T ss_dssp SHHHHHCGGGBCCCTT---SCCCC------------------------BTTBEEBCTTSHHHHHHHHHHHHHHHTTSCCC
T ss_pred CHHHHhCchheecCCC---CCCcc------------------------CCceEEEcCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 320 00112110000 00000 01223399999999999999999988889999
Q ss_pred eEeeccCC
Q 018278 198 GWRFDFVK 205 (358)
Q Consensus 198 GfR~D~a~ 205 (358)
+|.+|...
T Consensus 478 ~~K~D~~~ 485 (732)
T 2xn2_A 478 YIKWDMNR 485 (732)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999975
|
| >1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=8.3e-05 Score=71.40 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=47.6
Q ss_pred CCceEEEeeecCCCCCCCCchHHHH-hhhhhHHHcCCCEEEeCCCCCCC---CCCCCCccccCCCC
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLD 83 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~-~~L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d~~~id 83 (358)
.-.|++|.|--.+. -|.|||-.+. +.++.+++.|.+.++|+|+.+.. ++..|++.+-++.|
T Consensus 23 ~~Gill~l~SL~s~-~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~p~~~~SPY~~~S~fa~N 87 (505)
T 1tz7_A 23 LAGILLHVTSLPSP-YGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGN 87 (505)
T ss_dssp EEEEECCGGGSCCS-SSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCC
T ss_pred ceEEEecccccCCC-CCCccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCcCcccccccc
Confidence 34788898865543 3579999876 88999999999999999999764 24578877766666
|
| >1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 | Back alignment and structure |
|---|
Probab=98.06 E-value=4.9e-06 Score=81.64 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=83.7
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCC--ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM--PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~--~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.|.+.++.++++|++.|.| +.||. ..|+. +++.+|-+ ++.||+++|++|||+.+-+-+.-++.
T Consensus 210 te~~v~~~ad~~~~~G~~~~~I--------DdgW~~~~Gdw~-~d~~kFP~---lk~lvd~lh~~Glk~Giw~~P~~v~~ 277 (564)
T 1zy9_A 210 TWEETLKNLKLAKNFPFEVFQI--------DDAYEKDIGDWL-VTRGDFPS---VEEMAKVIAENGFIPGIWTAPFSVSE 277 (564)
T ss_dssp CHHHHHHHHHHGGGTTCSEEEE--------CTTSEEETTEEE-EECTTCCC---HHHHHHHHHHTTCEEEEEECTTEEET
T ss_pred CHHHHHHHHHHHHhcCCcEEEE--------CcccccccCCcc-cCcccCCC---HHHHHHHHHHCCCEEEEEeCCCccCC
Confidence 4678888899999999999998 23332 12332 33367765 99999999999999999887754433
Q ss_pred cCC--CCCcceeeccCCCCCC-CCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 018278 119 ERK--DGRGIYCIFEGGTSDD-RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG 195 (358)
Q Consensus 119 ~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~g 195 (358)
+++ ....+|+.-.+|.+.. ...|. ..+.-||+.||++++++.+.++.+ .++|
T Consensus 278 ~S~ly~~~pdw~v~~~G~~~~~~~~W~------------------------~~~~~lD~t~P~a~~~~~~~~~~~-~~~G 332 (564)
T 1zy9_A 278 TSDVFNEHPDWVVKENGEPKMAYRNWN------------------------KKIYALDLSKDEVLNWLFDLFSSL-RKMG 332 (564)
T ss_dssp TCHHHHHCGGGBCEETTEECEEEEETT------------------------EEEEEBCTTCHHHHHHHHHHHHHH-HHTT
T ss_pred CChhHHhCCCeEEecCCeeeeeecccC------------------------CceeecCCCCHHHHHHHHHHHHHH-HhcC
Confidence 221 0011222111110000 00010 012239999999999999999998 5599
Q ss_pred CCeEeeccCCC
Q 018278 196 FDGWRFDFVKG 206 (358)
Q Consensus 196 vDGfR~D~a~~ 206 (358)
||||.+|....
T Consensus 333 VD~iK~D~~~~ 343 (564)
T 1zy9_A 333 YRYFKIDFLFA 343 (564)
T ss_dssp CCEEEECCGGG
T ss_pred CCEEEEcCCCC
Confidence 99999999653
|
| >1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase FAMI acarbose, transferase; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00016 Score=69.40 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=44.0
Q ss_pred ceEEEeeecCCCCCCCCchHHHH-hhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCC
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLD 83 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~-~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id 83 (358)
.|++|.|--.+. -|.|||-.+. +.++.+++.|.+.++|+|+.+.. ++..|++.+-++.|
T Consensus 8 Gill~l~SL~s~-~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~~~~SPY~~~S~fa~N 68 (500)
T 1esw_A 8 GLLLHPTSLPGP-YGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGN 68 (500)
T ss_dssp EEECCGGGSCCS-SSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCC
T ss_pred EEEecchhcCCC-CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccC
Confidence 567777754432 3479999876 88999999999999999999753 23467776666655
|
| >1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP: c.1.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0008 Score=64.96 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=46.3
Q ss_pred CceEEEeeecCCCCCCCCchHHHH-hhhhhHHHcCCCEEEeCCCCCCC-----CCCCCCccccCCCC
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLYDLD 83 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~-~~L~yl~~LGv~~I~l~Pi~~~~-----~~~gY~~~d~~~id 83 (358)
-.|++|.|--.+. -|.|||-.+. +.++.+++.|.+.++|+|+.+.. ++..|++.+-++.|
T Consensus 28 ~Gill~l~SL~s~-~GIGdfgd~a~~fvd~la~~G~~~~qilPL~~t~~~~p~~~SPY~~~S~fa~N 93 (524)
T 1x1n_A 28 AGILLHPTSFPGP-YGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGN 93 (524)
T ss_dssp EEEECCGGGSCCT-TSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCC
T ss_pred eEEEecccccCCC-CCCccHHHHHHHHHHHHHHcCCCEEeecCCCCCCCCCCCCCCCcCcccccccC
Confidence 3799998865543 4579999876 88999999999999999998753 23467776666555
|
| >4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0004 Score=70.36 Aligned_cols=137 Identities=10% Similarity=0.025 Sum_probs=86.1
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCC-ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM-PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~-~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
|-+.|.+.++.++++|+..+.|===+-.......+ .-| ..+|+.+|- +.|+.|++.+|++|||+-+=+-+--++.+
T Consensus 344 ~e~~i~~~ad~aa~lG~e~fviDDGWf~~r~~d~~~lGd-W~~d~~kFP--~Glk~Lad~vh~~GmkfGLW~epe~v~~~ 420 (729)
T 4fnq_A 344 NEEKLVNIAKTEAELGIELFVLDDGWFGKRDDDRRSLGD-WIVNRRKLP--NGLDGLAKQVNELGMQFGLWVEPEMVSPN 420 (729)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSCCBTTCCSTTSCTTC-CSBCTTTCT--THHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred CHHHHHHHHHHHHhcCccEEEEcceeecCCCCCcccCCc-EEEChhhcC--ccHHHHHHHHHHCCCEEEEEeeccccCCC
Confidence 45777888899999999999874322111111111 112 223434554 36999999999999999999877655544
Q ss_pred CCC--CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 120 RKD--GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 120 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
++- ...+|.....+.. . .....+-.||+.+|+|++++.+.+...+++.|||
T Consensus 421 S~l~~~hPdw~~~~~~~~---~------------------------~~~r~q~~LD~~~P~v~~y~~~~i~~ll~~~Gid 473 (729)
T 4fnq_A 421 SELYRKHPDWCLHVPNRP---R------------------------SEGRNQLVLDYSREDVCDYIIETISNVLASAPIT 473 (729)
T ss_dssp SHHHHHCGGGBCCCTTSC---C------------------------CCBTTBEEBCTTSHHHHHHHHHHHHHHHTTTTCC
T ss_pred cHHHHhCchheeccCccC---C------------------------ccCCccccccCCChhHHHHHHHHHHHHHHHCCCC
Confidence 320 0112221111000 0 0001122389999999999999999999889999
Q ss_pred eEeeccCCCC
Q 018278 198 GWRFDFVKGY 207 (358)
Q Consensus 198 GfR~D~a~~i 207 (358)
.+.+|....+
T Consensus 474 YiK~D~n~~~ 483 (729)
T 4fnq_A 474 YVKWDMNRHM 483 (729)
T ss_dssp EEEEECCCCC
T ss_pred EEEEcCCCCC
Confidence 9999986543
|
| >2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0011 Score=67.54 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=82.6
Q ss_pred hHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 42 YNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
-+.+.+-++.+++.|| +.|||=--+-. +|.-.| +..|+.+|-+. ++||+++|++|+|+++=+-+ |.+.+
T Consensus 283 e~~v~~v~~~~r~~~IP~dvi~lD~~w~~----~~~w~d-ft~d~~~FPdp---~~mv~~Lh~~G~k~~l~i~P-~I~~~ 353 (773)
T 2f2h_A 283 EATVNSFIDGMAERNLPLHVFHFDCFWMK----AFQWCD-FEWDPLTFPDP---EGMIRRLKAKGLKICVWINP-YIGQK 353 (773)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECGGGBC----TTCCSS-CCBCTTTCSCH---HHHHHHHHHTTCEEEEEECS-EECTT
T ss_pred HHHHHHHHHHHHHcCCCeeEEEECccccc----cccccc-ceEChhhCCCH---HHHHHHHHHCCCEEEEEecC-CcCCC
Confidence 4567777888888777 88887432221 122224 45664567664 78999999999999997766 55554
Q ss_pred CCCCC----cceeecc-CCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 120 RKDGR----GIYCIFE-GGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 120 ~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
++... ..|+.-. ++.......| .....-+|+.||++++...+.++.+++ .
T Consensus 354 s~~y~e~~~~g~~vk~~~G~~~~~~~w------------------------~g~~~~~DftnP~a~~ww~~~~~~l~d-~ 408 (773)
T 2f2h_A 354 SPVFKELQEKGYLLKRPDGSLWQWDKW------------------------QPGLAIYDFTNPDACKWYADKLKGLVA-M 408 (773)
T ss_dssp STTHHHHHHHTCBCBCTTSSBCCBSSS------------------------STTBEEBCTTSHHHHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHCCceeECCCCCeeeeeec------------------------CCCceeeCCCCHHHHHHHHHHHHHHHh-c
Confidence 32110 1122111 0100000001 011223899999999999999999987 9
Q ss_pred CCCeEeeccCCCC
Q 018278 195 GFDGWRFDFVKGY 207 (358)
Q Consensus 195 gvDGfR~D~a~~i 207 (358)
|||||-.|....+
T Consensus 409 Gvd~~w~D~~e~~ 421 (773)
T 2f2h_A 409 GVDCFKTDFGERI 421 (773)
T ss_dssp TCCEEEECCCCCC
T ss_pred CCCEEEccCCCCC
Confidence 9999999986544
|
| >1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00042 Score=63.61 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=76.6
Q ss_pred ceEEEeee--cCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCC---CCCCCCCccccCCCCCCC--------CCCH
Q 018278 24 ALLFQGFN--WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS---VAPQGYMPGRLYDLDASK--------YGSQ 90 (358)
Q Consensus 24 ~v~~q~F~--~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~---~~~~gY~~~d~~~id~~~--------~Gt~ 90 (358)
.+.+..++ |... .++-..+.+.|+.+|++|+|+|.+....+. +.... + ++.+. +. -...
T Consensus 18 ~~~~~G~n~~~~~~---~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~P~~~~--~--~~~~~-~~~~~~~~~~~~~~ 89 (344)
T 1qnr_A 18 VGYFAGTNCYWCSF---LTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQ--I--WFQKL-SATGSTINTGADGL 89 (344)
T ss_dssp ESCEEEEECGGGGG---CCCHHHHHHHHHHHHHTTCCEEECCCCCEESSCCSTTC--C--CSEEC-CTTCCEECCSTTTT
T ss_pred EEEEEEEecccccc---cCCHHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCCc--e--eeeec-CCCCcccccCHHHH
Confidence 45566665 4322 135788889999999999999999422211 11100 0 12222 11 2357
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCC
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAP 170 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (358)
+.|.++++.|+++||+||+|++-++.... ....|..+.+ ...
T Consensus 90 ~~ld~~i~~a~~~Gi~vild~~~~w~~~g---~~~~~~~~~g-----------------------------------~~~ 131 (344)
T 1qnr_A 90 QTLDYVVQSAEQHNLKLIIPFVNNWSDYG---GINAYVNAFG-----------------------------------GNA 131 (344)
T ss_dssp HHHHHHHHHHHHHTCEEEEESCBSSSTTS---HHHHHHHHHC-----------------------------------SCT
T ss_pred HHHHHHHHHHHHCCCEEEEEeccCccccC---CHHHHHHHhC-----------------------------------CCh
Confidence 89999999999999999999874431000 0000100000 001
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcC
Q 018278 171 DIDHLNPRVQKELSDWMNWLKTEIG 195 (358)
Q Consensus 171 dln~~n~~v~~~l~~~~~~w~~~~g 195 (358)
+..+.+|++++.+++.++.++++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~r~~ 156 (344)
T 1qnr_A 132 TTWYTNTAAQTQYRKYVQAVVSRYA 156 (344)
T ss_dssp TGGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 2456789999999999999998774
|
| >3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00067 Score=66.11 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=82.7
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCC---ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSV-APQGYM---PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~---~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
-.+.|+.|+.+-||+|+.==.+-.- ...+-. ...+.++. .|-=..+-+|.+|++||++||+-|+=.-+.-...+.
T Consensus 142 ~~~~i~~L~~yHIN~~QFYDW~yrHh~P~~~~~~~~~~W~D~~-~R~i~~~tVk~yI~~ah~~gm~aM~YnmiYaA~~~~ 220 (643)
T 3vmn_A 142 YYRELEQMKNMNINSYFFYDVYKSATNPFPNVPKFDQSWNWWS-HSQVETDAVKALVNRVHQTGAVAMLYNMILAQNANE 220 (643)
T ss_dssp HHHHHHHHHHTTCCEEEETTCCSBTTBCSCSSSEEECTTCTTT-CCEEEHHHHHHHHHHHHHTTCEEEEEEESSEEETTS
T ss_pred hHHHHHHHHhcCcCeEEeeeecccccCcCCCCCcccccccccc-CCEehHHHHHHHHHHHHHcCchhhhhHhhhccccCc
Confidence 3567899999999999963221100 000000 01122223 333347899999999999999999876554443321
Q ss_pred -CCCCcceeeccCCCCCCCCCCCCCcccCCCCccC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 121 -KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS-DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
......|+.|..... ++... +....|. ++ .+.+-=+|..||+.|++|.+.+...++++||||
T Consensus 221 ~~g~~~~~~~y~~~~~----~~g~~---~~~~~~~~~g---------~p~~~~~nP~np~wq~yI~~~~~dvv~~~dfDG 284 (643)
T 3vmn_A 221 TAVLPDTEYIYNYETG----GYGQN---GQVMTYSIDD---------KPLQYYYNPLSKSWQNYISNAMAQAMKNGGFDG 284 (643)
T ss_dssp CCSSCGGGBCEESSSB----TTBST---TSBCEEEETT---------EEEEEEBCTTCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred ccCCcchhhhhccccc----ccccc---CccceeccCC---------CceEEEECCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 111122333332110 01000 0000000 00 011222788999999999999999999999999
Q ss_pred EeeccCCC
Q 018278 199 WRFDFVKG 206 (358)
Q Consensus 199 fR~D~a~~ 206 (358)
|.+|....
T Consensus 285 ~HiD~lG~ 292 (643)
T 3vmn_A 285 WQGDTIGD 292 (643)
T ss_dssp EEEECSCC
T ss_pred EeecccCC
Confidence 99998754
|
| >4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0023 Score=65.44 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=82.5
Q ss_pred chHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.|| +.|||=--+-...+.+ .-.| +..|+.+|-+. ++|++++|++|+|+++=+-+ |.+.
T Consensus 275 s~~ev~~vv~~~r~~~IP~Dvi~lD~dw~g~d~~~-~~gd-ftwd~~~FPdp---~~mv~~Lh~~G~k~vl~i~P-~I~~ 348 (817)
T 4ba0_A 275 SEAETRATVQKYKTEDFPLDTIVLDLYWFGKDIKG-HMGN-LDWDKENFPTP---LDMMADFKQQGVKTVLITEP-FVLT 348 (817)
T ss_dssp SHHHHHHHHHHHHHHTCCCCEEEECGGGSCSSSSS-CTTC-CSCCTTTCSCH---HHHHHHHHHTTCEEEEEECS-EEET
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcccccCCcccc-ccCc-cccccccCCCH---HHHHHHHHHCCCEEEEEeCC-CccC
Confidence 56788888888999888 9999864221110000 0112 45664577764 79999999999999997766 4444
Q ss_pred cCCCCC----cceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 119 ERKDGR----GIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 119 ~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
+++... ..|+.-.. +.+....-| .....-+|+.||++|+...+.++.+.+
T Consensus 349 ~s~~y~e~~~~g~~vk~~~G~~~~~~~w------------------------~G~~~~~DftnP~ar~ww~~~~~~l~~- 403 (817)
T 4ba0_A 349 SSKRWDDAVKAKALAKDPQGQPKAFELY------------------------FGNGGIIDVFSKEGSRWFSSIYKDLSK- 403 (817)
T ss_dssp TSTTHHHHHHTTCBCBCTTSSBCCEEET------------------------TEEEEEBCTTSHHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHhCCEEEECCCCCeEEEEec------------------------CCCceeecCCCHHHHHHHHHHHHHHHh-
Confidence 432100 11111000 000000000 001122899999999999999998886
Q ss_pred cCCCeEeeccCC
Q 018278 194 IGFDGWRFDFVK 205 (358)
Q Consensus 194 ~gvDGfR~D~a~ 205 (358)
.|||||-+|+..
T Consensus 404 ~GvDg~W~DmnE 415 (817)
T 4ba0_A 404 QGVAGWWGDLGE 415 (817)
T ss_dssp HTCCEEEECCTT
T ss_pred CCCcEEEecCCC
Confidence 899999999865
|
| >3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=67.63 Aligned_cols=141 Identities=17% Similarity=0.242 Sum_probs=85.9
Q ss_pred CchHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 40 GWYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.+-+.+.+.++.+++.|| +.||+=-=+. .+| .| |..|+.+|- +.++|++++|++|+|+++=+-+. ++
T Consensus 330 ~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~----~~~--~d-Ft~D~~~FP---dp~~mv~~Lh~~G~k~vl~idP~-I~ 398 (898)
T 3lpp_A 330 KSLDVVKEVVRRNREAGIPFDTQVTDIDYM----EDK--KD-FTYDQVAFN---GLPQFVQDLHDHGQKYVIILDPA-IS 398 (898)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCEEEECGGGS----STT--CT-TCCCTTTTT---THHHHHHHHHHTTCEEEEEECSC-EE
T ss_pred CCHHHHHHHHHHHHHcCCCceeeEeccccc----cCC--Cc-ceEChhhCC---CHHHHHHHHHHCCCEEEEEeCCc-cc
Confidence 467888889999999999 9999742111 112 23 456634665 68899999999999999987664 44
Q ss_pred ccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCC-CCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 018278 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG-NDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIG 195 (358)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~~~g 195 (358)
.+++.....|..|+.+... ++ +.. +..+ ....+..| ....-+|+.||++++...+.++.+.++.|
T Consensus 399 ~~~~~~~~~Y~~y~eg~~~---g~---fvk-------~~~G~~~~~g~~WpG~~~~~Dftnp~a~~ww~~~~~~~~~~~g 465 (898)
T 3lpp_A 399 IGRRANGTTYATYERGNTQ---HV---WIN-------ESDGSTPIIGEVWPGLTVYPDFTNPNCIDWWANECSIFHQEVQ 465 (898)
T ss_dssp CSCCTTSCCCHHHHHHHHH---TC---BCB-------CTTSSSBCCEEETTEEEECBCTTSHHHHHHHHHHHHHHHHHSC
T ss_pred cCCcccccccHHHHHHHhC---Cc---EEE-------CCCCCceeEEEecCCCccccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4432111123333221000 00 000 0000 00000001 11222899999999999999998887799
Q ss_pred CCeEeeccC
Q 018278 196 FDGWRFDFV 204 (358)
Q Consensus 196 vDGfR~D~a 204 (358)
|||+-+|+-
T Consensus 466 iDg~W~Dmn 474 (898)
T 3lpp_A 466 YDGLWIDMN 474 (898)
T ss_dssp CSEEEECST
T ss_pred ccEEEEeCC
Confidence 999999974
|
| >2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0022 Score=64.60 Aligned_cols=133 Identities=14% Similarity=0.184 Sum_probs=83.1
Q ss_pred chHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.|| +.|||=-=+. .||. | +..|+.+|-+ .++||+++|++|+|+++=+-+ +++.
T Consensus 188 ~~~ev~~v~~~~~~~~IP~dvi~lD~~y~----~~~~--d-ft~d~~~FPd---p~~mv~~Lh~~G~k~~l~i~P-~I~~ 256 (693)
T 2g3m_A 188 PQDKVVELVDIMQKEGFRVAGVFLDIHYM----DSYK--L-FTWHPYRFPE---PKKLIDELHKRNVKLITIVDH-GIRV 256 (693)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECGGGS----BTTB--T-TCCCTTTCSC---HHHHHHHHHHTTCEEEEEECS-CEEC
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEeccee----cCCc--c-ceEChhhCCC---HHHHHHHHHHCCCEEEEEecC-cccC
Confidence 46778888888888888 8888853221 1232 3 4566456765 689999999999999998876 5554
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
+. .|..|+.+.. | +.... .+....+..| ....-+|+.||+++++..+.++.+++ .|||
T Consensus 257 ~~-----~y~~y~e~~~-----~---fvk~~-------~G~~~~g~~W~g~~~~~Dftnp~a~~ww~~~~~~l~~-~GiD 315 (693)
T 2g3m_A 257 DQ-----NYSPFLSGMG-----K---FCEIE-------SGELFVGKMWPGTTVYPDFFREDTREWWAGLISEWLS-QGVD 315 (693)
T ss_dssp CT-----TCHHHHHHTT-----S---BCEET-------TSSBCEEEETTEEEECBCTTSHHHHHHHHHHHHHHHT-TTCC
T ss_pred CC-----CcHHHHHHHh-----h---eEECC-------CCCEEEEEeCCCCeeeeCCCCHHHHHHHHHHHHHHHh-cCCc
Confidence 32 1222222111 0 00000 0000000000 11222899999999999999999886 8999
Q ss_pred eEeeccCC
Q 018278 198 GWRFDFVK 205 (358)
Q Consensus 198 GfR~D~a~ 205 (358)
||-+|+..
T Consensus 316 g~w~DmnE 323 (693)
T 2g3m_A 316 GIWLDMNE 323 (693)
T ss_dssp EEEECSTT
T ss_pred EEEEecCC
Confidence 99999864
|
| >3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.031 Score=52.34 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=39.9
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-GSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~-Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+-++.||++|+|+|-|+=-+.. +.+. .-+ |-. |..+-|+++|+.|+++||+||||+
T Consensus 77 ~D~~~ik~~G~N~VRipi~~~~-----~~~~---~~~-py~~~~~~~ld~vV~~a~~~Gl~VILDl 133 (399)
T 3n9k_A 77 QDFKQISNLGLNFVRIPIGYWA-----FQLL---DND-PYVQGQVQYLEKALGWARKNNIRVWIDL 133 (399)
T ss_dssp HHHHHHHHTTCCEEEEEEEGGG-----TCCC---TTC-CCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEcccHHH-----ccCC---CCC-ccchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4578899999999998532111 1111 112 211 568899999999999999999998
|
| >3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0037 Score=64.19 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=82.6
Q ss_pred CchHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 40 GWYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
.+-+.+.+.++.+++.|| +.||+=-=+- .++ .| |..|+.+|- +.++||+++|++|+|+++=+-+. ++
T Consensus 302 ~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~----~~~--~d-Ft~D~~~FP---dp~~mv~~Lh~~G~k~v~~idP~-I~ 370 (875)
T 3l4y_A 302 GTLDNMREVVERNRAAQLPYDVQHADIDYM----DER--RD-FTYDSVDFK---GFPEFVNELHNNGQKLVIIVDPA-IS 370 (875)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCEEEECGGGS----BTT--BT-TCCCTTTTT---THHHHHHHHHHTTCEEEEEECSC-EE
T ss_pred CCHHHHHHHHHHHHhcCCCCceEEEccchh----cCC--Cc-eeeChhhCC---CHHHHHHHHHHCCCEEEEEeCCc-cc
Confidence 467888888888998888 8888732110 112 23 456634776 47899999999999999976553 33
Q ss_pred ccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 018278 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196 (358)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~~~gv 196 (358)
.++. ....|..|+.+.... + +... .++. ....+..| ....-+|+.||++++...+.++.+.++.||
T Consensus 371 ~~s~-~~~~y~~y~eg~~~g---~---fvk~-----~dG~-~~~~g~~WpG~~~~pDFtnP~a~~WW~~~~k~~~~~~gi 437 (875)
T 3l4y_A 371 NNSS-SSKPYGPYDRGSDMK---I---WVNS-----SDGV-TPLIGEVWPGQTVFPDYTNPNCAVWWTKEFELFHNQVEF 437 (875)
T ss_dssp CCCC-SSSCCHHHHHHHHHT---C---BCBC-----TTSS-SBCCEEETTEEEECBCTTSHHHHHHHHHHHHHHHTTSCC
T ss_pred cCcc-cccccHHHHHHHHCC---e---EEEC-----CCCC-cceEEEecCCCccCcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 3320 011122222110000 0 0000 0000 00000001 011227999999999999999988877999
Q ss_pred CeEeeccC
Q 018278 197 DGWRFDFV 204 (358)
Q Consensus 197 DGfR~D~a 204 (358)
||+-+|+-
T Consensus 438 dg~W~Dmn 445 (875)
T 3l4y_A 438 DGIWIDMN 445 (875)
T ss_dssp SEEEECST
T ss_pred cEEEEcCC
Confidence 99999974
|
| >3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0093 Score=56.56 Aligned_cols=140 Identities=11% Similarity=0.023 Sum_probs=78.3
Q ss_pred hHHHHhhhhhH----HHcCCCEEEeCCCCCCC--CCCCCCc--------cccCCCCCCCCCC---HHHHHHHHHHHHHcC
Q 018278 42 YNSLKNSIPDL----SNAGITHVWLPPPSQSV--APQGYMP--------GRLYDLDASKYGS---QADLKSLIQAFRQKG 104 (358)
Q Consensus 42 ~~gl~~~L~yl----~~LGv~~I~l~Pi~~~~--~~~gY~~--------~d~~~id~~~~Gt---~~d~~~Lv~~~H~~G 104 (358)
-+.|.+.++.+ +++|+..|.|==-+... ..++|.. ..-..+++.+|-+ -..++.|++.+|++|
T Consensus 28 e~~i~~~ad~~~~gl~~~G~~~~~iDDgW~~~~~~~~~y~~~~~~~~d~~G~~~~~~~kFP~~~~~~Gl~~l~~~ih~~G 107 (433)
T 3cc1_A 28 EEEVLGNAEYMANHLKKYGWEYIVVDIQWYEPTANSSAYNPFAPLCMDEYGRLLPATNRFPSAKNGAGFKPLSDAIHDLG 107 (433)
T ss_dssp HHHHHHHHHHHHHHTGGGTCCEEEECSCTTCCCTTSTTCCTTSCSCBCTTSCBCCCTTTCGGGTTTTTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcchhhCCeEEEECCCcCCCCCcccccccccccccCCCCCEeECCccCCCcccCCCHHHHHHHHHHcC
Confidence 46666777777 99999999874333222 1234431 0011233233422 116999999999999
Q ss_pred CEEEEEeecc----cccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 018278 105 IKCLADMVIN----HRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (358)
Q Consensus 105 i~VilD~V~N----H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~ 180 (358)
||+=+=+.+. .+..+++- + ..+|.......... .+ .....+.-||+++|+|+
T Consensus 108 lk~Giw~~p~i~~~~v~~~s~~-------~-------~~~~~~~di~~~~~-------~~---~~~~~~~~lD~~~p~~~ 163 (433)
T 3cc1_A 108 LKFGIHIMRGIPRQAVYENSPV-------L-------GSTKTAREIAHTNS-------IC---PWNTDMYGVDPTKEGAQ 163 (433)
T ss_dssp CEEEEEEESSEEHHHHHHTCBC-------T-------TSSCBHHHHEETTC-------CB---TTBTTEEEECTTSTTHH
T ss_pred CeeEEEeCCCCchhccCCCCcc-------c-------cccceecccccCCc-------cc---CCCCCceeecCCCHHHH
Confidence 9987766543 22222210 0 00121000000000 00 00011222899999999
Q ss_pred HHHHHHHHHHHHhcCCCeEeeccCCC
Q 018278 181 KELSDWMNWLKTEIGFDGWRFDFVKG 206 (358)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~ 206 (358)
+++...++.+.+ .|||.+.+|....
T Consensus 164 ~~~~~~~~~l~~-~GvDyvK~D~~~~ 188 (433)
T 3cc1_A 164 SYYNSLFELYAQ-WGVDFVKVDDIAA 188 (433)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESCSC
T ss_pred HHHHHHHHHHHH-cCCCEEEeCCccc
Confidence 999888887765 9999999998653
|
| >3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0086 Score=59.92 Aligned_cols=135 Identities=15% Similarity=0.318 Sum_probs=78.1
Q ss_pred chHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 018278 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~ 118 (358)
+-+.+.+.++.+++.|| ++|||=.-+.. +| .| |..|+.+|- +.++||+++|++|+|+++=+-+. +..
T Consensus 176 ~~~~v~~v~~~~~~~~IP~dvi~lD~dy~~----~~--~~-ft~d~~~FP---dp~~mv~~Lh~~G~k~v~~idP~-i~~ 244 (666)
T 3nsx_A 176 TKEDFRAVAKGYRENHIPIDMIYMDIDYMQ----DF--KD-FTVNEKNFP---DFPEFVKEMKDQELRLIPIIDAG-VKV 244 (666)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEECGGGSS----TT--CT-TCCCTTTCT---THHHHHHHHHTTTCEEEEEEESC-EEC
T ss_pred CHHHHHHHHHHHHhcCCCcceEEEecHHHH----hh--cc-cccChhhCC---CHHHHHHHHHHcCceEEeeeccc-eee
Confidence 56777888888888776 88888532221 22 22 556734676 58899999999999999654332 211
Q ss_pred cCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018278 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~~~gvD 197 (358)
+. .+..|+.+.... + +... ..+....+..| ....-+|+.||++++...+.++.+++ .|||
T Consensus 245 ~~-----~~~~y~e~~~~g---~---fvk~-------~~G~~~~g~~WpG~~~~pDftnp~a~~ww~~~~~~~~~-~Gid 305 (666)
T 3nsx_A 245 EK-----GYEVYEEGVKNN---Y---FCKR-------EDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLID-QGIE 305 (666)
T ss_dssp CT-----TCHHHHHHHHTT---C---BCBC-------TTSCBCCEEETTEEEECBCTTSHHHHHHHHHTTHHHHT-TTCC
T ss_pred ec-----CchHHhhhcccC---c---cccC-------CCCCcceEEecCCccCCccccCHHHHHHhhhhhhHHHh-ccch
Confidence 11 011111110000 0 0000 00000000000 01112799999999999999988886 8999
Q ss_pred eEeeccCC
Q 018278 198 GWRFDFVK 205 (358)
Q Consensus 198 GfR~D~a~ 205 (358)
||-+|+..
T Consensus 306 g~W~DmnE 313 (666)
T 3nsx_A 306 GFWNDMNE 313 (666)
T ss_dssp EEEEESTT
T ss_pred hhhhccCC
Confidence 99999865
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.02 Score=53.51 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=41.2
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCC---CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~---~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.+..||++|+++|-|-. +-.+. ..+|.. -..+.+.+.++++.|+++||+||+|+ |.+
T Consensus 52 d~~~ilk~~G~N~VRlrv-wv~p~~~~g~~y~~---------g~~d~~~~~~~a~~Ak~~GLkVlldf---Hys 112 (399)
T 1ur4_A 52 DIFKTLKEAGVNYVRVRI-WNDPYDANGNGYGG---------GNNDLEKAIQIGKRATANGMKLLADF---HYS 112 (399)
T ss_dssp CHHHHHHHTTCCEEEEEE-CSCCBCTTCCBCST---------TCCCHHHHHHHHHHHHHTTCEEEEEE---CSS
T ss_pred hHHHHHHHCCCCEEEEee-ecCCcccccCccCC---------CCCCHHHHHHHHHHHHHCCCEEEEEe---ccC
Confidence 457889999999999843 32221 112211 11358899999999999999999997 655
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.015 Score=53.17 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=40.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCC--CCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDAS--KYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~--~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
+.+.-||++|+|+|-|. ++ ++ | .+-+.+.+.++++.|+++||+|++|+ |.+
T Consensus 31 d~~~ilk~~G~N~VRi~-~w---------------~~-P~~g~~~~~~~~~~~~~A~~~GlkV~ld~---Hys 83 (332)
T 1hjs_A 31 PLENILAANGVNTVRQR-VW---------------VN-PADGNYNLDYNIAIAKRAKAAGLGVYIDF---HYS 83 (332)
T ss_dssp CHHHHHHHTTCCEEEEE-EC---------------SS-CTTCTTSHHHHHHHHHHHHHTTCEEEEEE---CCS
T ss_pred cHHHHHHHCCCCEEEEe-ee---------------eC-CCCCcCCHHHHHHHHHHHHHCCCEEEEEe---ccC
Confidence 34678899999999985 32 22 2 23367899999999999999999997 664
|
| >2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.025 Score=58.89 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=73.7
Q ss_pred chHHHHhhhhhHHHcCCC--EEEeCCCCCCCCCCCCCcc---ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 41 WYNSLKNSIPDLSNAGIT--HVWLPPPSQSVAPQGYMPG---RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~--~I~l~Pi~~~~~~~gY~~~---d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+-+.+.+.++.+++.||- .|||= ++|... ..|..|+.+|-+ .++||+++|++|+++++=+-+.
T Consensus 446 sq~ev~~va~~~re~gIPlDvi~lD--------~~y~~~~~~~dFtwD~~rFPd---p~~mv~~Lh~~G~k~vl~V~P~- 513 (1020)
T 2xvl_A 446 SSDEIIQNLKEYRDRKIPIDNIVLD--------WSYWPEDAWGSHDFDKQFFPD---PKALVDKVHAMNAQIMISVWPK- 513 (1020)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEEC--------SCCSCTTCTTSCCCCTTTCSC---HHHHHHHHHHTTCEEEEEECSE-
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEe--------ccccccCcccceEEChhhCCC---HHHHHHHHHHCCCEEEEEECCc-
Confidence 456677777777776654 77762 222211 124566456765 6899999999999998866553
Q ss_pred ccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 116 RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP--APDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
++.+++ .|..... ..| .... ..+.. ...+.+.+ ..-+|+.||++++...+.+..-+.+
T Consensus 514 I~~~s~----~Y~e~~~------~G~---~v~~--~~~~~-----~~~w~wpG~~~~v~DftNPear~~ww~~l~~~l~~ 573 (1020)
T 2xvl_A 514 FYPTTD----NYKELNA------KGF---MFNR--NLDEK-----NLDWIGKGYLNAFYDPFSPEATAIFWKQIRDKINV 573 (1020)
T ss_dssp ECTTSH----HHHHHHH------TTC---EETH--HHHTT-----CCCSSTTCCCCEEECTTSHHHHHHHHHHHHHHTGG
T ss_pred cCCCch----hHHHHHh------CCC---EEEc--CCCCc-----cccccCCCCCceeeCCCChHHHHHHHHHHHHHhhh
Confidence 433321 1100000 000 0000 00000 00000111 1236999999999887777554445
Q ss_pred cCCCeEeeccCC
Q 018278 194 IGFDGWRFDFVK 205 (358)
Q Consensus 194 ~gvDGfR~D~a~ 205 (358)
.|||||-+|+..
T Consensus 574 ~GiDg~W~DmnE 585 (1020)
T 2xvl_A 574 HGFDAWWLDAVE 585 (1020)
T ss_dssp GTCCEEEECCTT
T ss_pred cCCcEEEecCCC
Confidence 999999999863
|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.029 Score=52.74 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.8
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCC-CCC-CHHHHHHHHHHHHHcCCEEEEEee
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDAS-KYG-SQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~-~~G-t~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+.++.||++|+|+|-|+ +.- +.+.+. .-+ | ..| ..+.|+++|+.|+++||+||||+-
T Consensus 76 e~d~~~i~~~G~N~VRip-i~~----~~~~~~---~~~-py~~~~~l~~ld~vv~~a~~~Gi~VilDlH 135 (408)
T 1h4p_A 76 EQDFANIASQGFNLVRIP-IGY----WAFQIL---DDD-PYVSGLQESYLDQAIGWARNNSLKVWVDLH 135 (408)
T ss_dssp HHHHHHHHHTTCCEEEEE-EEG----GGTCCC---TTC-CCCCSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHCCCCEEEcc-CCH----HHcccC---CCC-CCccccHHHHHHHHHHHHHHCCCEEEEECC
Confidence 345789999999999994 321 111111 001 1 124 578899999999999999999974
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.021 Score=52.16 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=38.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.+.-||++|+|+|.|-. +- .+. +..-+.+.++++++.|+++||+||+|+
T Consensus 31 ~~~~ilk~~G~n~vRlri-~v-------------~P~-~g~~d~~~~~~~~~~ak~~Gl~v~ld~ 80 (334)
T 1fob_A 31 ALETILADAGINSIRQRV-WV-------------NPS-DGSYDLDYNLELAKRVKAAGMSLYLDL 80 (334)
T ss_dssp CHHHHHHHHTCCEEEEEE-CS-------------CCT-TCTTCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHcCCCEEEEEE-EE-------------CCC-CCccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 457889999999999822 11 111 223458899999999999999999996
|
| >3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.018 Score=52.82 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=48.9
Q ss_pred CCchH--HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 39 GGWYN--SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG---SQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 39 ~G~~~--gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G---t~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+|.+. +..+.|+.||++|+|+|-|.+.....+.+. ..+. -.+| +.++++++++.|+++||+|+++.-+
T Consensus 47 ~~~~~~~~~~~~l~~lk~~g~N~VrL~v~~~~~~~~~------~~~~-~~~~~t~~~~~v~~~~~~Ak~~GL~V~l~p~i 119 (343)
T 3civ_A 47 HGTWGTDEARASMRALAEQPFNWVTLAFAGLMEHPGD------PAIA-YGPPVTVSDDEIASMAELAHALGLKVCLKPTV 119 (343)
T ss_dssp TTGGGSHHHHHHHHHHHHSSCSEEEEEEEEEESSTTC------CCCB-CSTTTBCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcCchhHHHHHHHHHHcCCCEEEEEeeecCCCCCC------Cccc-ccCCCCCCHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 45554 456789999999999999987543321111 0111 1223 6899999999999999999999877
Q ss_pred c
Q 018278 114 N 114 (358)
Q Consensus 114 N 114 (358)
.
T Consensus 120 ~ 120 (343)
T 3civ_A 120 N 120 (343)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.02 Score=51.46 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=42.9
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCC-CC-----CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQ-SV-----APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~-~~-----~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.+.+.+.|+.+|++|+|+|-+. ++. .. ...++... .+ ..-.-.+.+.++++.|.++||+||+|+.
T Consensus 40 ~~~~~~~~l~~~k~~G~N~vRv~-~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~d~~~~~a~~~Gi~vil~~~ 111 (351)
T 3vup_A 40 NKNRIEPEFKKLHDAGGNSMRLW-IHIQGETTPAFNDQGFVTG----PD-KQGTMLDDMKDLLDTAKKYNILVFPCLW 111 (351)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEE-EEETTSSSSEECTTSCEEE----SC-SSSCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEC-cccccccCccccccccccc----cc-ccHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 34556777999999999999872 211 10 11111111 11 1112367889999999999999999984
|
| >1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.031 Score=50.11 Aligned_cols=50 Identities=16% Similarity=0.376 Sum_probs=38.9
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++.||++|+|+|-| |+... . ++..+ ..+.++++|+.|.++||+||+|+
T Consensus 36 ~~~~~lk~~G~N~VRi-~~~~~---~------~w~~~-----~~~~ld~~v~~a~~~Gi~Vild~ 85 (302)
T 1bqc_A 36 QAFADIKSHGANTVRV-VLSNG---V------RWSKN-----GPSDVANVISLCKQNRLICMLEV 85 (302)
T ss_dssp THHHHHHHTTCSEEEE-EECCS---S------SSCCC-----CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEE-EccCC---c------ccCCC-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 6788999999999999 44321 0 12223 36889999999999999999996
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.032 Score=51.49 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=39.9
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+.+...+-|+-.+++|++.|+.+=. .++...=-..+.|++|++.||+.||+||+|+-+.
T Consensus 38 ~~~~~~~~Yi~~a~~~Gf~~IFTSL~---------------~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~ 97 (385)
T 1x7f_A 38 STKEKDMAYISAAARHGFSRIFTCLL---------------SVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPA 97 (385)
T ss_dssp SCHHHHHHHHHHHHTTTEEEEEEEEC---------------CC--------HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEccCC---------------ccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 34565555666667889999976421 1110111236789999999999999999998765
|
| >1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.04 Score=50.55 Aligned_cols=87 Identities=15% Similarity=0.288 Sum_probs=53.9
Q ss_pred CceEEEeeecCCCCC----CCCch-HHHHhhhhhHHHcCCCEEEeCCCC-CC--CCCCCCCccccCCCCCCCCC---CHH
Q 018278 23 PALLFQGFNWESSNK----AGGWY-NSLKNSIPDLSNAGITHVWLPPPS-QS--VAPQGYMPGRLYDLDASKYG---SQA 91 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~----~~G~~-~gl~~~L~yl~~LGv~~I~l~Pi~-~~--~~~~gY~~~d~~~id~~~~G---t~~ 91 (358)
..+.++..+|-.... ..|.+ +.+.+.++.||++|+|+|-|. +. +. +.... ...|....+ |.+. ..+
T Consensus 19 ~~~~l~GvN~~g~~~~~~~~~g~~~~~~~~~~~~~~~~G~n~vRi~-~~~~~~~~~~~~-~~~~~~~~n-p~~~g~~~~~ 95 (358)
T 1ece_A 19 VPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLP-YSDDILKPGTMP-NSINFYQMN-QDLQGLTSLQ 95 (358)
T ss_dssp CEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEEE-EEGGGGSTTCCC-CSCCCSSSC-TTTTTCCHHH
T ss_pred CEEEEEEEecCCcCccccCccchhhchHHHHHHHHHHcCCCEEEee-ccHHHhcCCCCC-ccccccccC-ccccCccHHH
Confidence 356777777642110 01221 235677899999999999986 32 11 11100 112222245 5443 578
Q ss_pred HHHHHHHHHHHcCCEEEEEee
Q 018278 92 DLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.++++|+.|.++||+||+|+-
T Consensus 96 ~ld~~v~~a~~~Gi~vild~h 116 (358)
T 1ece_A 96 VMDKIVAYAGQIGLRIILDRH 116 (358)
T ss_dssp HHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEecC
Confidence 899999999999999999975
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.024 Score=52.08 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=41.7
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-GSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~-Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
.+.+...+-|+-.+++|++.|+.+=. .++ ..- -..+.|++|++.||+.||+||+|+-+.
T Consensus 14 ~~~~~~~~yi~~a~~~Gf~~IFTSL~---------------~~e-~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~ 73 (372)
T 2p0o_A 14 EITNDTIIYIKKMKALGFDGIFTSLH---------------IPE-DDTSLYRQRLTDLGAIAKAEKMKIMVDISGE 73 (372)
T ss_dssp CCCHHHHHHHHHHHHTTCCEEEEEEC---------------CC------CHHHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEccCC---------------ccC-CChHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 34556666677777899999986421 122 111 236889999999999999999999665
|
| >3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.042 Score=50.38 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=40.3
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+.++.||++|+|+|-+ |+.+. + .+..+ ..+.++++|+.|.++||+||+|+-
T Consensus 57 ~~~i~~lk~~G~N~VRi-p~~~~----~-----~~~~~-----~l~~ld~~v~~a~~~GiyVIlDlH 108 (345)
T 3jug_A 57 STAIPAIAEQGANTIRI-VLSDG----G-----QWEKD-----DIDTVREVIELAEQNKMVAVVEVH 108 (345)
T ss_dssp HHHHHHHHHTTCSEEEE-EECCS----S-----SSCCC-----CHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEE-EecCC----C-----ccCHH-----HHHHHHHHHHHHHHCCCEEEEEec
Confidence 35788999999999999 45321 1 12222 488999999999999999999974
|
| >3gyc_A Putative glycoside hydrolase; YP_001304622.1, structural GEN joint center for structural genomics, JCSG; HET: MSE; 1.85A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.023 Score=50.20 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=53.1
Q ss_pred EEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEe--CCC--CCCCCCC-C----CCccccCCCCCCCCC----CHHHH
Q 018278 27 FQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWL--PPP--SQSVAPQ-G----YMPGRLYDLDASKYG----SQADL 93 (358)
Q Consensus 27 ~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l--~Pi--~~~~~~~-g----Y~~~d~~~id~~~~G----t~~d~ 93 (358)
+=-|.|-....-|+.|.++-..++.+++.|+|+|-| ||. +.+++.- - |...+. + .+=| ....|
T Consensus 21 mWDFSWytr~~PGepf~DLD~afdEavERGYNTVRIcAmP~LLf~~p~~l~~l~pl~gQrrW---~-~pg~~evdgr~~L 96 (393)
T 3gyc_A 21 MWDFSWLERRWPGAGYEDWDQVLDELSERGYNAIRIDAYPHLIAENPMKKWLLKEVWNQQDW---G-SPDMNEVQVQPNL 96 (393)
T ss_dssp EEETHHHHCCSTTSSCSCHHHHHHHHHHTTCCEEEEECCHHHHHHCTTCCEEECCSCSSSSS---S-CSSCEEECCTTHH
T ss_pred eehhhhhhhcCCCCChhHHHHHHHHHHHcCCCeEEeccccceeecCCcchhhcccccccccc---C-CCCCceechHHHH
Confidence 333545434444788999999999999999999988 442 2332211 0 111122 2 2222 36789
Q ss_pred HHHHHHHHHcCCEEEEE
Q 018278 94 KSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 94 ~~Lv~~~H~~Gi~VilD 110 (358)
.+|.++||++|++||+-
T Consensus 97 ~elf~aAk~hd~~ViLS 113 (393)
T 3gyc_A 97 NLFLSKCKERDIKVGLS 113 (393)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 99999999999999985
|
| >3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.031 Score=50.56 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=40.6
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCC-ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYM-PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~-~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+-++.||++|+++|-|+ +. ..... ..+-+.++ +. ..+.++++|+.|+++||+||+|+
T Consensus 44 ~~d~~~l~~~G~n~vRi~-i~----w~~~~~~~~~~~~~-~~--~~~~~d~~v~~a~~~Gi~vildl 102 (320)
T 3nco_A 44 DEYFKIIKERGFDSVRIP-IR----WSAHISEKYPYEID-KF--FLDRVKHVVDVALKNDLVVIINC 102 (320)
T ss_dssp HHHHHHHHHHTCCEEEEC-CC----GGGSBCSSTTCCBC-HH--HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEe-ee----hHHhcCCCCCCccC-HH--HHHHHHHHHHHHHHCCCEEEEEc
Confidence 456899999999999995 32 11111 11123344 32 26889999999999999999996
|
| >3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.035 Score=50.50 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=39.5
Q ss_pred hhhhH-HHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 48 SIPDL-SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 48 ~L~yl-~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.++.| |++|+|+|-+ |++.. ..|| .++ +. ..+.++++|+.|.++||+||+|+
T Consensus 73 ~~~~l~~~~G~N~VRi-~~~~~--~~~~------~~~-~~--~~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 73 SLKWLRDDWGITVFRA-AMYTA--DGGY------IDN-PS--VKNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp HHHHHHHHTCCSEEEE-EEESS--TTST------TTC-GG--GHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHhcCCCEEEE-EeEEC--CCCc------ccC-HH--HHHHHHHHHHHHHHCCCEEEEEe
Confidence 46778 6899999999 45432 1232 245 54 38899999999999999999997
|
| >2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.055 Score=48.23 Aligned_cols=52 Identities=15% Similarity=0.350 Sum_probs=40.4
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
..+.++.||++|+|+|-| |+.. |+ .+..+ ..+.++++|+.|.++||+||+|+
T Consensus 33 ~~~~~~~i~~~G~N~VRi-~~~~-----~~----~~~~~-----~~~~ld~~v~~a~~~Gi~Vild~ 84 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRI-VLSD-----GG----QWEKD-----DIDTIREVIELAEQNKMVAVVEV 84 (294)
T ss_dssp HHHHHHHHHHTTCSEEEE-EECC-----SS----SSCCC-----CHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hHHHHHHHHHcCCCEEEE-EecC-----CC----ccCcc-----HHHHHHHHHHHHHHCCCEEEEEe
Confidence 446789999999999999 5542 11 11122 48899999999999999999996
|
| >1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.12 Score=49.01 Aligned_cols=71 Identities=10% Similarity=0.160 Sum_probs=47.1
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCC-----HHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-----QADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-----~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
++-..+.+.|+.+|++|+|+|-+. .... ..++...-+..+. +.-|. .+.|.++++.|.++||+||+|+.-+
T Consensus 59 ~~~~~~~~dl~~~k~~G~N~vR~~-~~d~--~~~~~~~~~~~~~-~~~g~~~e~~~~~lD~~l~~a~~~Gi~vil~l~~~ 134 (440)
T 1uuq_A 59 GDRDRLAKELDNLKAIGVNNLRVL-AVSE--KSEINSAVKPAVT-NGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNNF 134 (440)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEE-CCCB--CCCSTTSCSSCSB-SSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECCBS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC-cccC--CCCCccccccccc-CCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcccc
Confidence 466778888999999999999997 2211 0011100011233 22233 5667799999999999999998633
|
| >2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.051 Score=49.63 Aligned_cols=81 Identities=15% Similarity=0.305 Sum_probs=51.5
Q ss_pred ceEEEeee--cCCCC-CC-CCc----hHHHHhhhhhHHHcCCCEEEeCCCCCCC-----CCCCCCccccCCCCCCCCCCH
Q 018278 24 ALLFQGFN--WESSN-KA-GGW----YNSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 24 ~v~~q~F~--~~~~~-~~-~G~----~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-----~~~gY~~~d~~~id~~~~Gt~ 90 (358)
.+++...+ |...+ +. .|. ...+.+.++.+|++|+|+|-+.-.++.. ...|+ .+..+ + ...
T Consensus 18 ~~~~~GvN~~w~~~~~~~~~~~~~~~~~~~~~d~~~~k~~G~N~vR~~~~~~~~~~p~~~~~g~----~~~~~-~--~~~ 90 (353)
T 2c0h_A 18 HIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGY----VTGID-N--TLI 90 (353)
T ss_dssp EECEEEEECCCSSTTCSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSC----EEECC-T--THH
T ss_pred EEEEEEEEHHhhhccccccCCccccchHHHHHHHHHHHHcCCCEEEEceecCCccCccccCCCc----cccCC-H--HHH
Confidence 56677765 34332 11 123 3445667999999999999984222210 01121 12234 3 457
Q ss_pred HHHHHHHHHHHHcCCEEEEEe
Q 018278 91 ADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++++++.|+++||+||+|+
T Consensus 91 ~~ld~~~~~a~~~Gi~vil~l 111 (353)
T 2c0h_A 91 SDMRAYLHAAQRHNILIFFTL 111 (353)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEc
Confidence 889999999999999999998
|
| >1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.033 Score=49.64 Aligned_cols=59 Identities=12% Similarity=0.242 Sum_probs=39.9
Q ss_pred HhhhhhHH-HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 46 KNSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 46 ~~~L~yl~-~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+.++.|| ++|+|+|-++ +...+...+|. ..+ |. +..+.++++|+.|.++||+||+|+-
T Consensus 41 ~~di~~~~~~~G~N~vRi~-~~~~~~~~~~~-----~~~-p~-~~~~~ld~~v~~a~~~Gi~vild~h 100 (293)
T 1tvn_A 41 AETVAKAKTEFNATLIRAA-IGHGTSTGGSL-----NFD-WE-GNMSRLDTVVNAAIAEDMYVIIDFH 100 (293)
T ss_dssp HHHHHHHHHHHCCSEEEEE-EECCTTSTTST-----TTC-HH-HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEe-ccccCCCCCcc-----ccC-hH-HHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 35578899 5999999983 32211112221 123 31 3357789999999999999999973
|
| >3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.022 Score=53.04 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=45.2
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCC------------CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV------------APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~------------~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vi 108 (358)
+-+.+.+.|+.+|++|+|.|-+.-+.+.. ...-|+.-.. ++ ..--..+.|.++|++|+++||+||
T Consensus 41 ~~~~i~~~l~~~a~~G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd~~~~--~~-~~~~~~~~LD~~i~~A~k~GI~vi 117 (383)
T 3pzg_A 41 SNRMIDSVLESARDMGIKVLRIWGFLDGESYCRDKNTYMHPEPGVFGVPEG--IS-NAQNGFERLDYTIAKAKELGIKLI 117 (383)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCCBSHHHHHHHTEESBSBTTBCSSCTT--CS-SCEEHHHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccCCCccccccc--cc-chHHHHHHHHHHHHHHHHCCCEEE
Confidence 34567788999999999999985432210 0111221101 11 101127899999999999999999
Q ss_pred EEee
Q 018278 109 ADMV 112 (358)
Q Consensus 109 lD~V 112 (358)
+|+.
T Consensus 118 L~l~ 121 (383)
T 3pzg_A 118 IVLV 121 (383)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9986
|
| >3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.048 Score=49.99 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=40.8
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCcc-ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPG-RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~-d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+.++.||++|+++|-|+=-+.. +.+. .-+.++ +. ..+.++++|+.|+++||+||+|+
T Consensus 45 ~~di~~i~~~G~n~vRipi~w~~-----~~~~~~~~~~~-~~--~l~~l~~~v~~a~~~Gi~vildl 103 (345)
T 3ndz_A 45 HAMINKIKEAGFNTLRLPVTWDG-----HMGAAPEYTID-QT--WMKRVEEIANYAFDNDMYVIINL 103 (345)
T ss_dssp HHHHHHHHHHTCCEEEECCCCTT-----SBCCTTTCCBC-HH--HHHHHHHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHCCCCEEEEeeehHH-----hCCCCCCCccC-HH--HHHHHHHHHHHHHHCCCEEEEec
Confidence 45688999999999999532221 1110 012344 32 37889999999999999999995
|
| >1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.027 Score=52.30 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=40.2
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+.++.||++|+++|-|.--+.. +.+..-+.++ +. -.+.++++|+.|.++||+||+|+
T Consensus 64 ~~di~~i~~~G~n~vRipv~w~~-----~~~~~~~~~~-~~--~l~~l~~~v~~a~~~Gi~vild~ 121 (380)
T 1edg_A 64 KQMIDAIKQKGFNTVRIPVSWHP-----HVSGSDYKIS-DV--WMNRVQEVVNYCIDNKMYVILNT 121 (380)
T ss_dssp HHHHHHHHHHTCCEEEECCCCGG-----GEETTTTEEC-HH--HHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEecccHHh-----hcCCCCCcCC-HH--HHHHHHHHHHHHHHCCCEEEEeC
Confidence 45688999999999999632221 1110012233 32 26789999999999999999995
|
| >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.052 Score=49.49 Aligned_cols=58 Identities=9% Similarity=0.048 Sum_probs=40.8
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCcc-ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPG-RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~-d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+.++.||++|+|+|-|+--+.. +.+. +.+.++ + +..+.++++|+.|.++||+||+|+
T Consensus 39 ~~d~~~i~~~G~n~vRi~i~~~~-----~~~~~~p~~~~-~--~~~~~ld~~v~~a~~~Gi~vildl 97 (341)
T 1vjz_A 39 EEDFLWMAQWDFNFVRIPMCHLL-----WSDRGNPFIIR-E--DFFEKIDRVIFWGEKYGIHICISL 97 (341)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGG-----TSCSSCTTCCC-G--GGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeeCCHHH-----hcCCCCCCcCC-H--HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 45588999999999998532211 1110 012233 2 357889999999999999999997
|
| >2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.076 Score=51.16 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=40.8
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++.||++|+|+|-| |+.-. ..+|.... ..+ +.+ ..+.++++|+.|.++||+||||+
T Consensus 43 ~d~~~i~~~G~N~VRi-pv~~~--~~~~~~~~--~~~-~~~-~l~~ld~vv~~a~~~Gl~VIlD~ 100 (491)
T 2y8k_A 43 DQIARVKELGFNAVHL-YAECF--DPRYPAPG--SKA-PGY-AVNEIDKIVERTRELGLYLVITI 100 (491)
T ss_dssp HHHGGGGGGTCCEEEE-EEEEC--CTTTTSTT--CCC-TTT-THHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEE-Cceee--cccccCCC--ccC-hhH-HHHHHHHHHHHHHHCCCEEEEEC
Confidence 4578899999999998 55311 11231110 234 432 48899999999999999999996
|
| >3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.31 Score=44.33 Aligned_cols=70 Identities=23% Similarity=0.360 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCC
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (358)
.++ +...+.+++.+.++.||++|+||++=+ +. |.. .
T Consensus 50 ~~~-~~~~~~~~~~~~i~~~k~~g~kvllsi-----GG----------------------~~~----------s------ 85 (333)
T 3n12_A 50 EFS-PVYGTDADFKSDISYLKSKGKKVVLSI-----GG----------------------QNG----------V------ 85 (333)
T ss_dssp ECC-CSSSCHHHHHHHHHHHHHTTCEEEEEE-----ES----------------------TTC----------C------
T ss_pred Eec-CCccchHHHHHHHHHHHhCCCeEEEEe-----cC----------------------CCC----------c------
Confidence 346 666678899999999999999999854 11 100 0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCC
Q 018278 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (358)
Q Consensus 161 ~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (358)
--..+++.|+.+++.+..+++++|+||+-+|-=.
T Consensus 86 -----------~~~~~~~~r~~fi~si~~~~~~~gfDGiDiDwE~ 119 (333)
T 3n12_A 86 -----------VLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLES 119 (333)
T ss_dssp -----------CCCCSHHHHHHHHHHHHHHHHHHCCSEEEEECCT
T ss_pred -----------cccCCHHHHHHHHHHHHHHHHHcCCCeEEEeccC
Confidence 1234688999999999888888999999999643
|
| >3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.027 Score=51.55 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=44.2
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCc-cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMP-GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~-~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.-++..+.++.|+++|+++|-|+=-++. ..+ ..-..++ +. ..+.++++|+.|.++||+||+|+
T Consensus 41 ~~~~t~~m~~~i~~~G~N~vRipi~w~~-----~~~~~~~g~~~-~~--~l~~ld~vV~~a~~~Gi~vIlDl 104 (340)
T 3qr3_A 41 YPDGIGQMQHFVNEDGMTIFRLPVGWQY-----LVNNNLGGNLD-ST--SISKYDQLVQGCLSLGAYCIVDI 104 (340)
T ss_dssp SCCHHHHHHHHHHHHCCCEEEEEECHHH-----HTTTCTTCCCC-HH--HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCccHHHHHHHHHHCCCCEEEEEeeHHH-----hCCCCCCCccC-HH--HHHHHHHHHHHHHHCCCEEEEEe
Confidence 3466777888999999999999432221 000 0012344 32 37889999999999999999996
|
| >3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.49 Score=42.31 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (358)
+.++|++.|+.||++|+||++=+ +.. .. .
T Consensus 60 ~~~~~~~~i~~~~~~g~kvllsi-----GG~----------------------~~---------------s--------- 88 (302)
T 3ebv_A 60 TVDQFKADVRAKQAAGKKVIISV-----GGE----------------------KG---------------T--------- 88 (302)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE-----EET----------------------TC---------------C---------
T ss_pred CHHHHHHHHHHHHcCCCEEEEEE-----ECC----------------------CC---------------C---------
Confidence 57889999999999999999865 211 00 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHH
Q 018278 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210 (358)
Q Consensus 169 ~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~ 210 (358)
....+++.|+.+++.+..+++++|+||+-+|-=.....+
T Consensus 89 ---~~~~~~~~r~~f~~~~~~~~~~~~~DGiDiD~E~p~~~~ 127 (302)
T 3ebv_A 89 ---VSVNSSASATNFANSVYSVMREYGFDGVDIDLENGLNPT 127 (302)
T ss_dssp ---CCCCSHHHHHHHHHHHHHHHHHHTCCEEEEEECSCCCHH
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccccCHH
Confidence 124568899999999988888899999999976544443
|
| >1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.18 Score=50.21 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=70.7
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
-..+.+.++.+|++|+|+|-+. ++. |. .+. |.=| ..+.+.++++.||++||+||+++. |.+..
T Consensus 13 ~~~~~~dl~~mk~~G~N~vR~~-if~----W~-------~~e-P~~g~~d~~~ld~~ld~a~~~Gi~vil~~~--~~~~P 77 (645)
T 1kwg_A 13 KERWKEDARRMREAGLSHVRIG-EFA----WA-------LLE-PEPGRLEWGWLDEAIATLAAEGLKVVLGTP--TATPP 77 (645)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEC-TTC----HH-------HHC-SBTTBCCCHHHHHHHHHHHTTTCEEEEECS--TTSCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEe-eec----hh-------hcC-CCCCccChHHHHHHHHHHHHCCCEEEEeCC--CCCCC
Confidence 3566778999999999999984 211 11 011 1111 235789999999999999999862 22211
Q ss_pred CCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc----C
Q 018278 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI----G 195 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~----g 195 (358)
.|..-. ..+|..... ++ .. ..+......++.+|..++++...++.+++++ .
T Consensus 78 ------~Wl~~~------~P~~~~~~~--------~G--~~---~~~g~r~~~~~~~p~~~~~~~~~~~~l~~ry~~~p~ 132 (645)
T 1kwg_A 78 ------KWLVDR------YPEILPVDR--------EG--RR---RRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEA 132 (645)
T ss_dssp ------HHHHHH------CGGGSCBCT--------TS--CB---CCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ------hhHhhc------CCceeeeCC--------CC--cC---cccCccccCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 111000 001100000 00 00 0001111256788999999999999988877 5
Q ss_pred CCeEeecc
Q 018278 196 FDGWRFDF 203 (358)
Q Consensus 196 vDGfR~D~ 203 (358)
|.|+-++.
T Consensus 133 V~~w~i~N 140 (645)
T 1kwg_A 133 VAGFQTDN 140 (645)
T ss_dssp EEEEECSS
T ss_pred EEEEEecC
Confidence 77887776
|
| >3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.063 Score=51.19 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=45.4
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccc-cCCCCCCCC---CCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR-LYDLDASKY---GSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d-~~~id~~~~---Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.+.+.++.||++|+|+|-|+=-++.-...+ .+.. -+..+ |.+ ...+.++++|+.|+++||+||+|+-
T Consensus 84 ~~~~~~i~~ik~~G~N~VRipi~~~~l~~~~-~p~~~~~~~n-p~~~~~~~l~~ld~vV~~a~~~Gi~VIldlH 155 (458)
T 3qho_A 84 RNWEDMLLQIKSLGFNAIRLPFCTESVKPGT-QPIGIDYSKN-PDLRGLDSLQIMEKIIKKAGDLGIFVLLDYH 155 (458)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEEETGGGSTTC-CCCCCCTTTC-GGGTTCCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEeeeHHHhCCCC-CccccccccC-ccccchHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 3456788999999999999951111100000 0100 13456 544 2488999999999999999999974
|
| >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.097 Score=47.64 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=40.1
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccc-cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR-LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d-~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+.++.||++|+++|-|+--+.. +.+.+ -..++ + +..+.++++|+.|+++||+||+|+-
T Consensus 31 ~~d~~~i~~~G~n~vRi~i~~~~-----~~~~~~~g~~~-~--~~~~~l~~~v~~a~~~Gi~vildlh 90 (343)
T 1ceo_A 31 EKDIETIAEAGFDHVRLPFDYPI-----IESDDNVGEYK-E--DGLSYIDRCLEWCKKYNLGLVLDMH 90 (343)
T ss_dssp HHHHHHHHHHTCCEEEEEEEGGG-----TBCSSSTTCBC-H--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCHHH-----hccccCCCccc-H--HHHHHHHHHHHHHHHCCCEEEEEec
Confidence 34588999999999999632221 00000 01122 2 2477899999999999999999963
|
| >1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.095 Score=48.31 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=42.5
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
-..+.+.++.+|++|+|+|-+. ++.. ..| .. ....+..|- ..+.|.++|+.|+++||+||+|+.-
T Consensus 41 ~~~~~~dl~~~k~~G~N~vR~~-~~~~-~~w--~~---~~~~~g~~~~~~~~~ld~~i~~a~~~Gi~vil~l~~ 107 (373)
T 1rh9_A 41 RIKVTNTFQQASKYKMNVARTW-AFSH-GGS--RP---LQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVN 107 (373)
T ss_dssp THHHHHHHHHHHHTTCCEEEEE-SSCS-SSS--SC---SEEETTEECHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHHHCCCCEEEEC-eecC-CCC--cc---ccCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4566778999999999999983 2211 111 10 001101111 2567889999999999999999763
|
| >3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.063 Score=48.27 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=40.5
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+.++.||++|+++|-+.--+..-... ..-+.++ + ...+.++++|+.|+++||+||+|+
T Consensus 36 ~~d~~~l~~~G~n~vR~~i~w~~~~~~----~~~~~~~-~--~~~~~~d~~v~~a~~~Gi~vild~ 94 (317)
T 3aof_A 36 DEFFDIIKEAGFSHVRIPIRWSTHAYA----FPPYKIM-D--RFFKRVDEVINGALKRGLAVVINI 94 (317)
T ss_dssp THHHHHHHHHTCSEEEECCCGGGGBCS----STTCCBC-H--HHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeccHHHhcCC----CCCCcCC-H--HHHHHHHHHHHHHHHCCCEEEEEe
Confidence 456889999999999997322110000 0112344 3 136778999999999999999996
|
| >3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.2 Score=50.19 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=69.0
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCC-----CCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPP-----SQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi-----~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
-.-+.+.|..+|++|+|+|-+..+ .+.++ .| +.+.+.++|+.||++||+||+.+...
T Consensus 22 ~~~~~~Dl~~mk~~G~n~vr~~if~W~~~eP~~g---------------~~-~f~~ld~~i~~~~~~Gi~vil~~~~~-- 83 (675)
T 3tty_A 22 KATMEEDMRMFNLAGIDVATVNVFSWAKIQRDEV---------------SY-DFTWLDDIIERLTKENIYLCLATSTG-- 83 (675)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECSSCHHHHBSSSS---------------CB-CCHHHHHHHHHHHHTTCEEEEECCTT--
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeechhhhCCcCC---------------cc-CHHHHHHHHHHHHHCCCEEEEeCCCC--
Confidence 456778899999999999998641 11111 11 13578999999999999999985421
Q ss_pred cccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-
Q 018278 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG- 195 (358)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~g- 195 (358)
+. ..|.. .. +.+|... +..+.. ..+......++++|..++++.+.++.++++|+
T Consensus 84 ~~------P~Wl~-~~-----~Pe~l~~----------d~~G~~---~~~g~r~~~~~~~p~~~~~~~~~~~~l~~ry~~ 138 (675)
T 3tty_A 84 AH------PAWMA-KK-----YPDVLRV----------DYEGRK---RKFGGRHNSCPNSPTYRKYAKILAGKLAERYKD 138 (675)
T ss_dssp SC------CHHHH-HH-----CGGGBCB----------CTTSCB---CCSCSSSCBCTTCHHHHHHHHHHHHHHHHHTTT
T ss_pred CC------Chhhh-hc-----CCceeee----------cCCCcC---cccCCccCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 11 11110 00 0000000 000000 00001112567899999999999999988775
Q ss_pred ---CCeEeecc
Q 018278 196 ---FDGWRFDF 203 (358)
Q Consensus 196 ---vDGfR~D~ 203 (358)
|-++-++.
T Consensus 139 ~p~Vi~w~v~N 149 (675)
T 3tty_A 139 HPQIVMWHVSN 149 (675)
T ss_dssp CTTEEEEECSS
T ss_pred CCcEEEEEEcc
Confidence 34555554
|
| >1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.14 Score=48.89 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=40.1
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
..+.++.||++|+|+|.| |+.. |+ .+.-+ ..+.++++|+.|.++||+||+|+
T Consensus 41 ~~~di~~ik~~G~N~VRi-pv~~-----g~----~~~~~-----~l~~ld~vv~~a~~~Gl~VIlDl 92 (464)
T 1wky_A 41 ATTAIEGIANTGANTVRI-VLSD-----GG----QWTKD-----DIQTVRNLISLAEDNNLVAVLEV 92 (464)
T ss_dssp HHHHHHHHHTTTCSEEEE-EECC-----SS----SSCCC-----CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHCCCCEEEE-EcCC-----CC----ccCHH-----HHHHHHHHHHHHHHCCCEEEEEe
Confidence 446788999999999999 4531 11 11112 57899999999999999999997
|
| >3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.11 Score=48.07 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=39.3
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+-++.||++|+++|-|+ +.-..- +....-+.++ + ...+.++++|+.|.++||+||+|+
T Consensus 65 ~~di~~i~~~G~N~vRip-i~w~~~---~~~~~~~~~~-~--~~l~~~~~vv~~a~~~Gi~vildl 123 (376)
T 3ayr_A 65 EDMFKVLIDNQFNVFRIP-TTWSGH---FGEAPDYKID-E--KWLKRVHEVVDYPYKNGAFVILNL 123 (376)
T ss_dssp HHHHHHHHHTTCCEEEEC-CCCTTS---BCCTTTCCBC-H--HHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe-eEChhh---cCCCCCCccC-H--HHHHHHHHHHHHHHHCCCEEEEEC
Confidence 355889999999999995 321100 0000011233 2 126789999999999999999995
|
| >2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.08 Score=49.34 Aligned_cols=62 Identities=10% Similarity=0.179 Sum_probs=41.2
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
..+.++.||++|+++|-|+--+...- .+..-+.++ + ...+.++++|+.|+++||+||+|+--
T Consensus 71 ~~~d~~~l~~~G~n~vRl~i~w~~~~----~~~~~~~~~-~--~~l~~~d~~v~~a~~~Gi~vild~h~ 132 (395)
T 2jep_A 71 TPELIKKVKAAGFKSIRIPVSYLNNI----GSAPNYTIN-A--AWLNRIQQVVDYAYNEGLYVIINIHG 132 (395)
T ss_dssp CHHHHHHHHHTTCCEEEECCCCGGGB----CCTTTCCBC-H--HHHHHHHHHHHHHHTTTCEEEECCCG
T ss_pred cHHHHHHHHHcCCCEEEEeeeecccc----CCCCCCccC-H--HHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 34568899999999999964332100 000011233 2 13677999999999999999999543
|
| >1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.12 Score=47.60 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=40.7
Q ss_pred hhhhhHH-HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 47 ~~L~yl~-~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+.++.|+ ++|+|+|-|+ +.-. ..+ +.++ +.+ .+.++++|+.|.++||+||+|+--
T Consensus 57 ~d~~~l~~~~G~N~VRip-~~~~--~~~------~~~~-~~~--l~~ld~~v~~a~~~Gi~VIld~H~ 112 (364)
T 1g01_A 57 NAFVALSNDWGSNMIRLA-MYIG--ENG------YATN-PEV--KDLVYEGIELAFEHDMYVIVDWHV 112 (364)
T ss_dssp HHHHHHHTTSCCSEEEEE-EESS--SSS------TTTC-TTH--HHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEE-eeeC--CCC------CccC-HHH--HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4567885 9999999985 3211 112 3456 543 688999999999999999999764
|
| >3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.73 E-value=1.2 Score=43.96 Aligned_cols=63 Identities=22% Similarity=0.149 Sum_probs=48.9
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+-+.+....-+|.-+++|+..|.+---+.. . .-.|+..++ |. .++++||+-||++|++|++=.
T Consensus 305 g~n~~~~k~yIDfAa~~G~~yvlvD~gW~~-~----~~~d~~~~~-p~----~di~~l~~Ya~~kgV~i~lw~ 367 (641)
T 3a24_A 305 GVNNPTYKAYIDFASANGIEYVILDEGWAV-N----LQADLMQVV-KE----IDLKELVDYAASKNVGIILWA 367 (641)
T ss_dssp SSSHHHHHHHHHHHHHTTCCEEEECTTSBC-T----TSCCTTCBC-TT----CCHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccccc-C----CCCCccccC-Cc----CCHHHHHHHHHhcCCEEEEEe
Confidence 458888999999999999999999433332 1 112677777 76 479999999999999999863
|
| >2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15 | Back alignment and structure |
|---|
Probab=92.51 E-value=0.15 Score=45.71 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i 207 (358)
+|..+|++|+.|.+.+...++ .|+|||=+|.+..+
T Consensus 113 vDi~~~~w~~i~~~rl~~~~~-kG~DGvflDnvD~y 147 (309)
T 2aam_A 113 VKYWYNEWKEIVFSYLDRVID-QGFKGIYLDRIDSF 147 (309)
T ss_dssp ECTTSHHHHHHHHHHHHHHHH-TTCSEEEEECTTHH
T ss_pred EecCCHHHHHHHHHHHHHHHH-cCCCeEeecccchh
Confidence 899999999999999998887 99999999998643
|
| >1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A | Back alignment and structure |
|---|
Probab=92.45 E-value=0.13 Score=46.09 Aligned_cols=58 Identities=26% Similarity=0.305 Sum_probs=38.8
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCc-cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMP-GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~-~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+.++.||++|+++|-|+=-++. ..+ ..-..++ + ...+-++++|+.|.++||+||+|+
T Consensus 34 ~~di~~~~~~G~n~vRi~i~w~~-----~~~~~~~~~~~-~--~~l~~~~~~v~~~~~~gi~vild~ 92 (305)
T 1h1n_A 34 PNTIDTLISKGMNIFRVPFMMER-----LVPNSMTGSPD-P--NYLADLIATVNAITQKGAYAVVDP 92 (305)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHH-----HSCSSTTSCCC-H--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEecccHHH-----cCCCCCCCCcC-H--HHHHHHHHHHHHHHHCCCEEEEec
Confidence 45688999999999998421110 000 0001122 1 236779999999999999999995
|
| >1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.45 Score=43.76 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=43.4
Q ss_pred chHHHHhhhhhH-----HHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 41 WYNSLKNSIPDL-----SNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 41 ~~~gl~~~L~yl-----~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+-+.+.+.++.+ +++|+..|.|==-+... ...| |+ .+++.+|-+ .++.|++.+|++|||+.+=.-+
T Consensus 24 ~e~~i~~~ad~~~~~gl~~~G~~~v~iDdgW~~~~rd~~G----~~-~~~~~~FP~--Gl~~l~~~ih~~Glk~Giw~~~ 96 (362)
T 1uas_A 24 NEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQG----NF-VPNRQTFPS--GIKALADYVHAKGLKLGIYSDA 96 (362)
T ss_dssp CHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCTTS----CC-CBCTTTCTT--CHHHHHHHHHHTTCEEEEEEES
T ss_pred CHHHHHHHHHHHHHcCchhcCCcEEEECCCcCCCCCCCCC----Ce-eEChhccCc--cHHHHHHHHHHCCCEeEEEeeC
Confidence 456677777777 99999999873222211 1112 33 455344632 5999999999999998776543
|
| >2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.078 Score=29.12 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEE
Q 018278 88 GSQADLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~Vi 108 (358)
||+++++.|-++|++.+|+|-
T Consensus 12 gtpeelkklkeeakkanirvt 32 (36)
T 2ki0_A 12 GTPEELKKLKEEAKKANIRVT 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHCCCCC
T ss_pred CCHHHHHHHHHHHHhccEEEE
Confidence 899999999999999999874
|
| >1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=92.19 E-value=0.094 Score=46.57 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=38.8
Q ss_pred hhhhhHH-HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~-~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++.|+ ++|+|+|-++ +... ...+| ..+ |. +..+.++++|+.|.++||+||+|+
T Consensus 42 ~d~~~l~~~~G~N~vR~~-~~~~-~~~~~------~~~-~~-~~~~~ld~~v~~a~~~Gi~vild~ 97 (291)
T 1egz_A 42 DTVASLKKDWKSSIVRAA-MGVQ-ESGGY------LQD-PA-GNKAKVERVVDAAIANDMYAIIGW 97 (291)
T ss_dssp HHHHHHHHTTCCCEEEEE-EECS-STTST------TTC-HH-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEe-cccc-ccCCC------cCC-HH-HHHHHHHHHHHHHHHCCCEEEEEc
Confidence 5678899 8999999994 3221 11122 122 21 346788999999999999999997
|
| >3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=1.5 Score=42.78 Aligned_cols=125 Identities=10% Similarity=0.151 Sum_probs=77.5
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCcccc--------CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe-
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL--------YDLDASKYGSQADLKSLIQAFRQKGIKCLADM- 111 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~--------~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~- 111 (358)
+.+.|.+.||.++..++|.+++--. .. ..|.|.+..| +..+ . +=|.+|++++|+-|.++||.||-.+
T Consensus 202 ~~~~ik~~id~mA~~KlN~lH~Hlt-Dd-qgwrlei~~~P~Lt~~Ga~~~~-~-~YT~~di~eiv~yA~~rgI~VIPEId 277 (572)
T 3ozo_A 202 SIESIKRTIEAMAAVKLNTFHWHIT-DS-QSFPFVTTKRPNLYKFGALSPQ-K-VYTKAAIREVVRFGLERGVRVLPEFD 277 (572)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-CS-SCCCBCCSSSHHHHHHHSSSSS-S-CBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCceEEEEee-cC-cCceeccccCcchhccCCcCCC-C-CcCHHHHHHHHHHHHHhCCceeeeec
Confidence 4778888899999999999998642 11 1344443332 1122 2 2389999999999999999999988
Q ss_pred ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 018278 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (358)
Q Consensus 112 V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~ 191 (358)
++.|+...-. ..... .|.....|...+... ..--||..+|++.+++.+++...+
T Consensus 278 ~PGH~~a~~~--~~~l~-----------------~~~~~~~~~~~~~~~-------~~~~l~~~~~~t~~fl~~v~~Ev~ 331 (572)
T 3ozo_A 278 APAHVGEGWQ--DTDLT-----------------VCFKAEPWKSYCVEP-------PCGQLNPTKDELYQYLEDIYSDMA 331 (572)
T ss_dssp ESSSCCTTCT--TTTCE-----------------ECTTCSSGGGTCSSS-------SCCEECTTCTHHHHHHHHHHHHHH
T ss_pred cchHHHHHhc--Cchhh-----------------hccCcCCccccccCC-------CCcccCCCChhHHHHHHHHHHHHH
Confidence 7788854311 00000 000001111000000 001288899999999999999988
Q ss_pred HhcC
Q 018278 192 TEIG 195 (358)
Q Consensus 192 ~~~g 195 (358)
+-+.
T Consensus 332 ~lF~ 335 (572)
T 3ozo_A 332 EVFD 335 (572)
T ss_dssp HHCC
T ss_pred HhcC
Confidence 8543
|
| >2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 | Back alignment and structure |
|---|
Probab=92.09 E-value=0.47 Score=42.05 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 177 PRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 177 ~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
++-|+.+.+.+..+++++|.||+=+|-=
T Consensus 105 ~~~r~~Fa~sv~~~v~~ygfDGiDiDwE 132 (289)
T 2ebn_A 105 TARAKAFAQELKNTCDLYNLDGVFFDDE 132 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEeee
Confidence 6778888888888888899999999954
|
| >3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.37 Score=47.73 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=43.7
Q ss_pred chHHHHhhhhhH-----HHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 018278 41 WYNSLKNSIPDL-----SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (358)
Q Consensus 41 ~~~gl~~~L~yl-----~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH 115 (358)
+-+.+.+.++.+ +++|+..|-|==-+.......+ -|+ .+++.+|-+ .++.|++.+|++|||+.+=+-+-+
T Consensus 27 ~~~~~~~~ad~~~~~g~~~~G~~~~~iDdgW~~~~~d~~--g~~-~~~~~~fP~--gl~~l~~~i~~~Glk~gi~~~~~~ 101 (614)
T 3a21_A 27 DYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDSA--GNI-TVDTAEWPG--GMSAITAYIHSKGLKAGIYTDAGK 101 (614)
T ss_dssp CHHHHHHHHHHHHHTTHHHHTCCEEECCTTSCCSCBCTT--CCB-CCCTTTSTT--CHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CHHHHHHHHHHHHHcCHHhhCCEEEEECCCcCCCCcCCC--CCE-EECccccCC--cHHHHHHHHHHCCCeeEEEecCCC
Confidence 345566666664 9999999987222211100001 233 455234643 599999999999999888776643
|
| >2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.12 Score=49.57 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=47.9
Q ss_pred ceEEEeeecCCCCCC--CCchHHHHhhh-hhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 018278 24 ALLFQGFNWESSNKA--GGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~--~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~ 100 (358)
.+++..+++....+. .|...-..+.+ +.||++|+|+|-|.-.+.. ..+.. -..+ ....+.++++|+.|
T Consensus 44 ~~~l~GvN~~~~~~~~~~g~~~~~~~di~~~l~~~G~N~VRl~v~w~~-----~~p~~-g~~~---~~~l~~l~~~v~~a 114 (481)
T 2osx_A 44 SLILRGFNTASSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRS-----VEPAP-GVYD---QQYLDRVEDRVGWY 114 (481)
T ss_dssp EECCEEEEECGGGGTCTTSCCSCCHHHHHHHHHHHCCCEEEEEECHHH-----HCSBT-TBCC---HHHHHHHHHHHHHH
T ss_pred EEEeeeEecCCCCCCCCCCCccccHHHHHHHHHHCCCCEEEEeCcHHH-----cCCCC-CCcC---HHHHHHHHHHHHHH
Confidence 566676654322110 12222344567 8999999999998521110 00000 0112 12367888999999
Q ss_pred HHcCCEEEEEeec
Q 018278 101 RQKGIKCLADMVI 113 (358)
Q Consensus 101 H~~Gi~VilD~V~ 113 (358)
+++||+||+|+--
T Consensus 115 ~~~Gi~vildlH~ 127 (481)
T 2osx_A 115 AERGYKVMLDMHQ 127 (481)
T ss_dssp HHTTCEEEEEECC
T ss_pred HHCCCEEEEEccc
Confidence 9999999999753
|
| >3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.7 Score=43.04 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=40.8
Q ss_pred hHHHHhhhhhHHH-----cCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 42 YNSLKNSIPDLSN-----AGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 42 ~~gl~~~L~yl~~-----LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
-+.+.+.++.+++ +|+..|.|==-+... ...| |+ .+++.+|-+ .++.|++.+|++|||+.+=+-+
T Consensus 25 e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~r~~~G----~~-~~~~~kFP~--Gl~~l~~~i~~~Glk~Giw~~p 96 (397)
T 3a5v_A 25 EQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESSK----TL-LADPTKFPR--GIKPLVDDIHNLGLKAGIYSSA 96 (397)
T ss_dssp HHHHHHHHHHHHHHTHHHHTCCEEECCSSCBCSSCCTTS----CC-CBCTTTCTT--CHHHHHHHHHHTTCEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCcccCceEEEECCCcCCCCCCCCC----Ce-EEChhcCCc--CHHHHHHHHHHcCCEEEEEecC
Confidence 4555566666665 999999873222211 1112 33 455234632 5899999999999998876554
|
| >2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway, glycoside hydrolase family 3 starch binding domain; 2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A* 2x2j_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.06 Score=56.36 Aligned_cols=32 Identities=25% Similarity=0.146 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
+||.||++++.-.+.++.+++ .|||||-+|+-
T Consensus 513 pDFtnp~a~~WW~~~~k~l~~-~GvDg~W~Dmn 544 (1027)
T 2x2h_A 513 PDWGRPDVAEWWGNNYKKLFS-IGLDFVWQDMT 544 (1027)
T ss_dssp BCTTSTTHHHHHHHTTHHHHT-TTCCEEEECST
T ss_pred cCCCCHHHHHHHHHHHHHHhh-CCCCEEEEcCC
Confidence 788999999999999998886 99999999994
|
| >2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.12 Score=46.37 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=38.8
Q ss_pred hhhhhHH-HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~-~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++.|+ ++|+|+|-| |+.-. ..|| .++ +. +-.+.++++|+.|.++||+||+|+
T Consensus 46 ~d~~~l~~~~G~N~vRi-~~~~~--~~~~------~~~-~~-~~l~~ld~~v~~a~~~Gl~vild~ 100 (306)
T 2cks_A 46 SSLDALAYDWKADIIRL-SMYIQ--EDGY------ETN-PR-GFTDRMHQLIDMATARGLYVIVDW 100 (306)
T ss_dssp HHHHHHHHTSCCSEEEE-EEESS--TTSG------GGC-HH-HHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEE-Eeeec--CCCc------ccC-HH-HHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4577785 699999999 44321 1232 345 42 225789999999999999999996
|
| >3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.5 Score=44.53 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCC
Q 018278 94 KSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDID 173 (358)
Q Consensus 94 ~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 173 (358)
.++|+.+|++|+||+|-+==+|.+... ..+
T Consensus 231 ~~~v~~lq~~glKVllSIgGg~~~~gf-------------------------------------------------~~l- 260 (451)
T 3poh_A 231 ETLLQPLRRRGVKVLLGLLGNHDITGL-------------------------------------------------AQL- 260 (451)
T ss_dssp HHHTHHHHHTTCEEEEEEECCSSSCCT-------------------------------------------------TCB-
T ss_pred HHHHHHHHHCCCEEEEEECcCCCCCCc-------------------------------------------------ccC-
Confidence 678899999999999986444443210 003
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEeecc
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (358)
+++-|+.+.+.++.+++.||.||+-+|-
T Consensus 261 --s~~~r~~Fa~~v~~~v~~yglDGIDiDw 288 (451)
T 3poh_A 261 --SEQGAKDFAREVAQYCKAYNLDGVNYDD 288 (451)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred --CHHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 5788899999999999999999999996
|
| >4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.53 Score=42.55 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.-.+.++|++-|+.||++|+||++=+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~g~kvllSi 103 (328)
T 4axn_A 77 PYNLSDTEFRRQVGVLNSQGRAVLISL 103 (328)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 444578899999999999999999853
|
| >7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A | Back alignment and structure |
|---|
Probab=91.46 E-value=0.23 Score=44.36 Aligned_cols=54 Identities=22% Similarity=0.187 Sum_probs=39.7
Q ss_pred hhhhhHH-HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 47 ~~L~yl~-~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.++.|+ ++|+|+|-|+ +... ..|| ..+ +. -.+.++++|+.|.++||+||+|+-
T Consensus 47 ~~~~~l~~~~G~N~VRip-~~~~--~~~~------~~~-~~--~~~~ld~~v~~a~~~Gi~Vild~H 101 (303)
T 7a3h_A 47 ESMKWLRDDWGINVFRAA-MYTS--SGGY------IDD-PS--VKEKVKEAVEAAIDLDIYVIIDWH 101 (303)
T ss_dssp HHHHHHHHHTCCCEEEEE-EESS--TTST------TTC-TT--HHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEE-EEeC--CCCc------cCC-HH--HHHHHHHHHHHHHHCCCEEEEEec
Confidence 3467787 7999999984 3221 1232 245 54 478899999999999999999973
|
| >4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.44 Score=46.94 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=77.1
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCC----CCCCccccCCCCCCCCCCHHHHHHHH-HHHHHcCCEEEEEeecccc
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAP----QGYMPGRLYDLDASKYGSQADLKSLI-QAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~----~gY~~~d~~~id~~~~Gt~~d~~~Lv-~~~H~~Gi~VilD~V~NH~ 116 (358)
-+.|-.-++.|+++|+++|+|..+....++ --|-|..+--+. .+-|-+.+ +..+++|++|..-+.. .
T Consensus 296 ~~nl~~li~ri~~~g~~~V~lqaf~dp~gdg~~~~~yfpn~~~p~~------~Dlf~~v~wql~~r~~v~vyAWmp~--l 367 (618)
T 4f9d_A 296 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMK------ADIFSRVAWQLRTRSGVNIYAWMPV--L 367 (618)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECEECTTCSSCBCEESSCCSSSCBS------CSCHHHHHHHHHHHHCCEEEEEECS--S
T ss_pred HHhHHHHHHHHHHcCCCEEEEEEEEcCCCCcccccccCCCCCcchh------hhhHHHHHHHHhhhcCCEEEEeeeh--h
Confidence 346666788999999999999987654332 124444333332 23355666 6688999999999976 3
Q ss_pred cccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 018278 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196 (358)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gv 196 (358)
|-.-. . .......|.......... ......|+--||++|+.+.+..+.++....+
T Consensus 368 ~~~~~----------~-~~~~~~~~~~~~~~~~~~--------------~~~~~~lsp~~~~~~~~~~~iy~dl~~~~~~ 422 (618)
T 4f9d_A 368 SWDLD----------P-TLTRVKYLPTGEKKAQIH--------------PEQYHRLSPFDDRVRAQVGMLYEDLAGHAAF 422 (618)
T ss_dssp CBCCC----------T-TSCBCCCCGGGHHHHHTC--------------GGGGGCBCTTCHHHHHHHHHHHHHHHHHCCC
T ss_pred hcccc----------c-ccchhhhhhcccccCCcC--------------cccccccCCCCHHHHHHHHHHHHHHHhhCCC
Confidence 32210 0 000011111000000000 0001227778999999999999999995599
Q ss_pred CeEeecc
Q 018278 197 DGWRFDF 203 (358)
Q Consensus 197 DGfR~D~ 203 (358)
||+-||-
T Consensus 423 dGilf~d 429 (618)
T 4f9d_A 423 DGILFHD 429 (618)
T ss_dssp SEEEECT
T ss_pred CeEEEcC
Confidence 9999954
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=91.07 E-value=0.13 Score=51.60 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=23.9
Q ss_pred HHHHHHcCCCeeeeecCcccc---CCCCCCCCC
Q 018278 328 GYAYILTHPGTPCIVISVTYP---LFHPLNVLE 357 (358)
Q Consensus 328 a~a~l~~~pG~P~IyyGdE~G---~~~~~n~~~ 357 (358)
+..+.+|+||+|-||+|.|.+ +.+|.|+-.
T Consensus 570 q~ll~lt~PGvPd~YqG~E~~~~slvDPDNRRp 602 (720)
T 1iv8_A 570 LVALKIMSAGIPDFYQGTEIWRYLLTDPDNRVP 602 (720)
T ss_dssp HHHHHHHSSSEEEEETTTTSCCCCCSTTGGGCC
T ss_pred HHHHHhCCCCCCccccCcCcccccCCCCCCCCC
Confidence 445668999999999999975 668888743
|
| >4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.2 Score=45.19 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=44.8
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCC---CCCCCCccc--------cCCCC---CCCCC--CHHHHHHHHHHHHHc
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGR--------LYDLD---ASKYG--SQADLKSLIQAFRQK 103 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d--------~~~id---~~~~G--t~~d~~~Lv~~~H~~ 103 (358)
.+-..+.+.|+.+|++|+|+|-+--..+.. ....|...+ ..... .+.+. ..+.+.+++++|.++
T Consensus 34 ~~~~~~~~~l~~~~~~G~N~iR~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~ 113 (387)
T 4awe_A 34 NDQPDIEKGMTAARAAGLTVFRTWGFNDKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKT 113 (387)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCEEESSCCTTCSSCCCCCTTCCTTCCCSEEECTTSCEEECCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCcccCCCccCccccchhhhccccccccchhhhhcccCccchhhhhhHHHHHHHHHHc
Confidence 345778888999999999999984322110 011111111 00000 01111 135578899999999
Q ss_pred CCEEEEEeecc
Q 018278 104 GIKCLADMVIN 114 (358)
Q Consensus 104 Gi~VilD~V~N 114 (358)
||+||+++..+
T Consensus 114 gi~v~~~~~~~ 124 (387)
T 4awe_A 114 GIKLIVALTNN 124 (387)
T ss_dssp TCEEEEECCBS
T ss_pred CCEEEEeeccc
Confidence 99999997644
|
| >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=1.9 Score=43.09 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=50.5
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEe---CCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWL---PPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l---~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD 110 (358)
|-+.+....-+|.-+++|+..|.+ ---++.. +..+ .+-||..+. |.+ |+++||+-||++|++||+=
T Consensus 367 g~nte~~K~YIDFAA~~G~eyvLveGwD~GW~~~~~~~~~-~~fd~~~p~-pd~----Dl~eL~~YA~sKGV~iilw 437 (738)
T 2d73_A 367 SANTANVKRYIDFAAAHGFDAVLVEGWNEGWEDWFGNSKD-YVFDFVTPY-PDF----DVKEIHRYAARKGIKMMMH 437 (738)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEECSCBTTGGGCSSSCCS-SCCCSSCBC-TTC----CHHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeccCCcccccCcccc-ccccccccC-CCC----CHHHHHHHHHhCCCEEEEE
Confidence 458888999999999999999998 4444321 1122 235777777 754 7999999999999999985
|
| >1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A | Back alignment and structure |
|---|
Probab=89.99 E-value=1.1 Score=39.43 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 176 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
+++-|+.+++.+..+++++|+||+-+|-=
T Consensus 104 s~~~r~~f~~s~~~~~~~~~fDGiDiDwE 132 (271)
T 1edt_A 104 SQQAASAFAKQLSDAVAKYGLDGVDFDDE 132 (271)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 68889999999988888899999999963
|
| >1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=1.5 Score=41.14 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=42.3
Q ss_pred chHHHHhhhhhH-----HHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 41 WYNSLKNSIPDL-----SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 41 ~~~gl~~~L~yl-----~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+-+.+.+.++.+ +++|+..|.|==-+...... ..-|+ .+++.+|-+ .++.|++.+|++|||+.+=+
T Consensus 27 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d--~~G~~-~~~~~kFP~--Gl~~l~~~i~~~Glk~Giw~ 97 (417)
T 1szn_A 27 DESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGR--VDGHI-APNATRFPD--GIDGLAKKVHALGLKLGIYS 97 (417)
T ss_dssp CHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCC--BTTBC-CBCTTTCTT--HHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCC--CCCCE-EECcccCCc--CHHHHHHHHHHcCCEEEEEe
Confidence 356666667766 99999999872222111101 11233 455244643 79999999999999988764
|
| >1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=1.4 Score=42.37 Aligned_cols=125 Identities=10% Similarity=0.078 Sum_probs=75.6
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccC---------CCC--CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLY---------DLD--ASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~---------~id--~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+.|.+.||.++..++|.+++-.- .. ..|.+.+..|= .+. +..+=|.+|++++|+-|.++||.||-
T Consensus 172 ~~~~ik~~id~ma~~KlN~lh~Hlt-Dd-q~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 172 GVDEVKRYIDRVARYKYNKLHLHLS-DD-QGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECB-CS-SCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEec-cC-CCceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4678888899999999999998642 11 12333322211 111 01122799999999999999999999
Q ss_pred Ee-ecccccccCCCCCcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 018278 110 DM-VINHRTAERKDGRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWM 187 (358)
Q Consensus 110 D~-V~NH~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~ 187 (358)
.+ ++.|+..--. .|-.+.. +... ..+.. ..+ ....||..+|++.+++.+++
T Consensus 250 EID~PGH~~a~l~----aypeL~~~~~~~--~~~~~-------~~~--------------~~~~l~~~~~~t~~fl~~v~ 302 (512)
T 1jak_A 250 EIDMPGHTNAALA----SYAELNCDGVAP--PLYTG-------TKV--------------GFSSLCVDKDVTYDFVDDVI 302 (512)
T ss_dssp ECCCSSSCHHHHH----HCGGGSTTSCCC--CCCCS-------CCC--------------SCCCCCTTCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHH----hCHHhcCcCCCC--ccccc-------cCc--------------CCcccCCCCHHHHHHHHHHH
Confidence 88 7888864211 0000110 0000 00000 000 01128999999999999999
Q ss_pred HHHHHhc
Q 018278 188 NWLKTEI 194 (358)
Q Consensus 188 ~~w~~~~ 194 (358)
...++-+
T Consensus 303 ~Ev~~lF 309 (512)
T 1jak_A 303 GELAALT 309 (512)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 9998744
|
| >2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=0.6 Score=45.40 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=37.1
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.+.+-+..+|++|+|+|-+ ++++ |.-+. .++++.|++.||+||+|+-
T Consensus 87 e~~~rDi~LmK~~GiN~VRv-----------------y~~~-P~~~~----d~~ldl~~~~GIyVIle~~ 134 (555)
T 2w61_A 87 KICLRDIPFLKMLGVNTLRV-----------------YAID-PTKSH----DICMEALSAEGMYVLLDLS 134 (555)
T ss_dssp HHHHHHHHHHHHHTCSEEEE-----------------CCCC-TTSCC----HHHHHHHHHTTCEEEEESC
T ss_pred HHHHHHHHHHHHcCCCEEEE-----------------eccC-CCCCh----HHHHHHHHhcCCEEEEeCC
Confidence 45566688999999999999 2344 44444 4677789999999999974
|
| >2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=3.6 Score=39.56 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=74.8
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCcccc--------CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe-e
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL--------YDLDASKYGSQADLKSLIQAFRQKGIKCLADM-V 112 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~--------~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~-V 112 (358)
.+.|.+.||.++..++|.+++-.. .. ..+.|.+..| +... ..+=|.+|++++|+-|.++||.||-.+ +
T Consensus 161 ~~~ik~~id~mA~~KlN~lh~Hlt-Dd-q~wr~ei~~~P~Lt~~Ga~~~~-~~~YT~~di~eiv~yA~~rgI~VIPEID~ 237 (507)
T 2gjx_A 161 LSSILDTLDVMAYNKLNVFHWHLV-DD-PSFPYESFTFPELMRKGSYNPV-THIYTAQDVKEVIEYARLRGIRVLAEFDT 237 (507)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECC-CS-SCCCBCCSSCTHHHHHHSSCTT-TSCBCHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCceEEEEEe-cc-cCeeeeccccchhhhccccCCC-CCCcCHHHHHHHHHHHHHcCCEEEECCCC
Confidence 678888899999999999998531 11 1233333221 1111 233389999999999999999999998 7
Q ss_pred cccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 018278 113 INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 192 (358)
Q Consensus 113 ~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~ 192 (358)
+.|+..--..... .. ..|.+.... .+ ..--||-.+|++.+++.+++...++
T Consensus 238 PGH~~a~l~~~p~-L~----------------~~~~~~~~~--------~~----~~~~l~p~~~~t~~fl~~v~~Ev~~ 288 (507)
T 2gjx_A 238 PGHTLSWGPGIPG-LL----------------TPCYSGSEP--------SG----TFGPVNPSLNNTYEFMSTFFLEVSS 288 (507)
T ss_dssp SSSCTTTTTTSTT-CE----------------EEEESSSSE--------EE----EEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhCHh-hc----------------ccCCCCCcc--------CC----CCCccCCCCHHHHHHHHHHHHHHHH
Confidence 8888643210000 00 000000000 00 0001888999999999999998887
Q ss_pred h
Q 018278 193 E 193 (358)
Q Consensus 193 ~ 193 (358)
-
T Consensus 289 l 289 (507)
T 2gjx_A 289 V 289 (507)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.13 E-value=4 Score=38.76 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=81.1
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCC---CCCCCccccCCCCCCCC--CCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLYDLDASKY--GSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~---~~gY~~~d~~~id~~~~--Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
-.+-++-+|+.|+..|-|+- ++-. -|.-..++|...+ ..+ |..|=+++|+++|+++||++.+=+-+
T Consensus 56 ~~~w~~~~k~aGaky~v~ta--kHHdGf~lw~S~~t~~~~~~-~p~~~~k~Div~e~~~A~r~~Gl~~g~Y~s~------ 126 (469)
T 3eyp_A 56 CRQWMQTLKAAGIPAAILTA--KHADGFCLWPSKYTDYSVKN-AAWKNGKGDVVREFVDACEEYGLKAGIYLGP------ 126 (469)
T ss_dssp HHHHHHHHHHTTCCEEEEEE--ECTTCCBSSCCTTCSSBGGG-SSGGGGTCCHHHHHHHHHHHHTCEEEEEECS------
T ss_pred HHHHHHHHHHcCCCEEEEEE--EeCCCccccCCCCCCccccc-CcccCCCCCHHHHHHHHHHHcCCeEEEEeCh------
Confidence 34667889999999998763 2211 1111233443344 444 34588999999999999999883221
Q ss_pred CCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCe
Q 018278 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG-FDG 198 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~g-vDG 198 (358)
.+|+.... -++.+++-.+++...++.++..|| |+.
T Consensus 127 -------------------~dw~~~~~-------------------------~~y~~~~Y~~~~~~Ql~ELlt~Yg~i~~ 162 (469)
T 3eyp_A 127 -------------------HDRHEHLS-------------------------PLYTTERYKEYYAHQLGELMSDYGKIWE 162 (469)
T ss_dssp -------------------SCHHHHTS-------------------------TTCCHHHHHHHHHHHHHHHHHSSCCCCE
T ss_pred -------------------hHhCCCcC-------------------------cccCcHHHHHHHHHHHHHHHhcCCcccE
Confidence 11211000 122345667888889999999998 799
Q ss_pred EeeccCCCC--CH---HHHHHHHHhcCCCeEE
Q 018278 199 WRFDFVKGY--AP---SITKVYMENTSPDFAV 225 (358)
Q Consensus 199 fR~D~a~~i--~~---~~~~~~~~~~~p~~~~ 225 (358)
+=+|.+..- .. .-|.+++++..|..++
T Consensus 163 lW~Dg~~~~~~~~~~~~~w~~~i~~~qP~~vi 194 (469)
T 3eyp_A 163 TWWDGAGADELTTPVYRHWYKIVREKQPDCVI 194 (469)
T ss_dssp EECCCTTCTTCCHHHHHHHHHHHHHHCTTCEE
T ss_pred EEeCCCCCCCccchhHhHHHHHHHHHCcCcEE
Confidence 999997542 22 2355778888884444
|
| >2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=3.1 Score=39.41 Aligned_cols=114 Identities=11% Similarity=-0.084 Sum_probs=69.0
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCC-----ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCC
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYM-----PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~-----~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~ 121 (358)
+-.+-+|+.|+..|-|+- ++ =+||. .+++..++ .. +..|=+++|+++|+++||++.+=+- ...+
T Consensus 109 ~Wa~~~k~AGakyvvlTa--KH--HDGF~lwpSk~t~~ns~~-~~-pkrDlv~El~~A~rk~Glk~GlY~S---~~~d-- 177 (455)
T 2zxd_A 109 EWADLFKKAGAKYVIPTT--KH--HDGFCLWGTKYTDFNSVK-RG-PKRDLVGDLAKAVREAGLRFGVYYS---GGLD-- 177 (455)
T ss_dssp HHHHHHHHTTCSEEEEEE--EC--TTCCBSSCCSSCSCBTTT-ST-TCSCHHHHHHHHHHHTTCEEEEEEE---CSCC--
T ss_pred HHHHHHHHhCCCEEEEEe--ec--cCCccccCCCCCCCcccc-cC-CCCChHHHHHHHHHHcCCeEEEEec---CCcc--
Confidence 345788999999998763 11 12321 22333333 21 2568899999999999999998322 0011
Q ss_pred CCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEee
Q 018278 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (358)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~ 201 (358)
| +.+ ..|.... ...+. ..-.+++..+++...++.+++.||.|++=+
T Consensus 178 -----W--~~p------~~~~~~~----~~~y~-----------------~~~~~~~y~~~~~~Ql~ELlt~Y~pd~lWf 223 (455)
T 2zxd_A 178 -----W--RFT------TEPIRYP----EDLSY-----------------IRPNTYEYADYAYKQVMELVDLYLPDVLWN 223 (455)
T ss_dssp -----G--GGC------CSCCCSG----GGGGT-----------------CSCCSHHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred -----c--cCc------ccccccc----ccccc-----------------CCCccHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 1 000 0000000 00000 001367899999999999999999999999
Q ss_pred ccCC
Q 018278 202 DFVK 205 (358)
Q Consensus 202 D~a~ 205 (358)
|...
T Consensus 224 Dg~~ 227 (455)
T 2zxd_A 224 DMGW 227 (455)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9764
|
| >4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* | Back alignment and structure |
|---|
Probab=88.97 E-value=0.1 Score=48.03 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=37.8
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+.++.||++|+|+|-+. +.... +... .+ + ...+.++++|+.|.++||+||+|+
T Consensus 88 ~~di~~ik~~G~N~VRi~-~~~~~----~~~~----~~-~--~~l~~ld~~v~~a~~~Gi~Vild~ 141 (359)
T 4hty_A 88 KKHFEVIRSWGANVVRVP-VHPRA----WKER----GV-K--GYLELLDQVVAWNNELGIYTILDW 141 (359)
T ss_dssp HHHHHHHHHTTCSEEEEE-ECHHH----HHHH----HH-H--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEe-ccHHH----hhcc----CC-H--HHHHHHHHHHHHHHHCCCEEEEEc
Confidence 345788999999999995 32210 0000 01 1 126778999999999999999996
|
| >3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens} | Back alignment and structure |
|---|
Probab=87.68 E-value=4.8 Score=38.99 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=50.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCC------CCCCCC------CCCCc--------cccCCCCCC--CCCCHHHHHHHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPP------SQSVAP------QGYMP--------GRLYDLDAS--KYGSQADLKSLIQ 98 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi------~~~~~~------~gY~~--------~d~~~id~~--~~Gt~~d~~~Lv~ 98 (358)
+.+.|.+.||.++-..+|.+++--. .+.+++ ..|.. ...+.-. + .+=|.+|++++|+
T Consensus 153 ~~~~ik~~ID~MA~~KlN~lH~HltDdqgwriei~~yP~Lt~~Ga~r~~t~~g~~~~~~~~~~-~~~g~YT~~di~eIv~ 231 (543)
T 3rcn_A 153 PKDNVLRFIEVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRESSLGSWRAGVFDGR-PHGGFYTQDDLREIVA 231 (543)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECEETTEECBCCSSCTHHHHTTTEESCCBSSCGGGCCBCCC-CEECCBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEeecccccCcchhcccchhhhhhccccccccccccccccccCC-ccCCCcCHHHHHHHHH
Confidence 3677888899999999999998521 111110 01110 1111111 1 1227999999999
Q ss_pred HHHHcCCEEEEEe-ecccccc
Q 018278 99 AFRQKGIKCLADM-VINHRTA 118 (358)
Q Consensus 99 ~~H~~Gi~VilD~-V~NH~~~ 118 (358)
-|.++||.||-.+ ++.|+..
T Consensus 232 YA~~rgI~VIPEID~PGH~~a 252 (543)
T 3rcn_A 232 FAADRHITVIPEIDVPGHSQA 252 (543)
T ss_dssp HHHHTTCEEEEECCCSSSCHH
T ss_pred HHHHcCCEEeeeeccchhHHH
Confidence 9999999999998 6788864
|
| >3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 1.75A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=87.58 E-value=2.1 Score=38.56 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 85 SKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 85 ~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
|.--+...+.+.|+.||++|+||++=+
T Consensus 60 ~~~~~~~~~~~~i~~~k~~g~kvllsi 86 (321)
T 3ian_A 60 PYNKTDTEFRAEISKLNAEGKSVLIAL 86 (321)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcccchhHHHHHHHHHHCCCEEEEEe
Confidence 433456789999999999999999864
|
| >1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase; 1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB: 1eom_A* | Back alignment and structure |
|---|
Probab=87.32 E-value=0.63 Score=41.29 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 88 GSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 88 Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
...+++++.|+.||++|+||++-+
T Consensus 63 ~~~~~~~~~i~~~q~~g~KVllSI 86 (290)
T 1eok_A 63 KSYKDLDTQIRSLQSRGIKVLQNI 86 (290)
T ss_dssp SSHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEe
Confidence 345788888999999999999865
|
| >3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* | Back alignment and structure |
|---|
Probab=87.14 E-value=16 Score=34.69 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=78.6
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCC-----CccccCCCCCCCC--CCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGY-----MPGRLYDLDASKY--GSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY-----~~~d~~~id~~~~--Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~ 117 (358)
-.+-.+-+|+.|+..|-|+- ++ -+|| ..++| .+....+ |..+=+++|+++|+++||++-+=+-+
T Consensus 64 ~~~W~~~~k~aGakyvvlt~--kH--HdGF~lw~S~~t~~-~v~~~p~~~~krDiv~el~~A~r~~gl~~g~Y~S~---- 134 (478)
T 3ues_A 64 VDQWMDALVAGGMAGVILTC--KH--HDGFCLWPSRLTRH-TVASSPWREGKGDLVREVSESARRHGLKFGVYLSP---- 134 (478)
T ss_dssp HHHHHHHHHHTTCSEEEEEE--EC--TTCCBSSCCTTCSC-BGGGSSGGGGTCCHHHHHHHHHHHTTCEEEEEECS----
T ss_pred HHHHHHHHHHcCCCEEEEeE--Ee--cCCccccCCCCCCc-ccccCCccCCCCCHHHHHHHHHHHcCCeEEEEeCh----
Confidence 34667889999999998763 22 1232 22332 2321222 24688999999999999999873221
Q ss_pred ccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-C
Q 018278 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG-F 196 (358)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~g-v 196 (358)
.+|+... | -.+++-.+++...++.++..|| +
T Consensus 135 ---------------------~d~~~~~-------y--------------------~~~~~y~~~~~~ql~EL~~~Yg~~ 166 (478)
T 3ues_A 135 ---------------------WDRTEES-------Y--------------------GKGKAYDDFYVGQLTELLTQYGPI 166 (478)
T ss_dssp ---------------------CCSSCTT-------T--------------------TSSHHHHHHHHHHHHHHHHSSSCC
T ss_pred ---------------------HHhCCcc-------c--------------------CchHHHHHHHHHHHHHHHhcCCcc
Confidence 1222110 0 0135667888899999999998 6
Q ss_pred CeEeeccCCC---------CCHHHHHHHHHhcCCCeEEE
Q 018278 197 DGWRFDFVKG---------YAPSITKVYMENTSPDFAVG 226 (358)
Q Consensus 197 DGfR~D~a~~---------i~~~~~~~~~~~~~p~~~~g 226 (358)
+++=+|.+.. ..-+-+.+.+++..|-.++.
T Consensus 167 ~~~W~Dg~~~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~ 205 (478)
T 3ues_A 167 FSVWLDGANGEGKNGKTQYYDWDRYYNVIRSLQPDAVIS 205 (478)
T ss_dssp SEEEECCCCCCCTTSCCCCCCHHHHHHHHHHHCTTSEEE
T ss_pred eEEEeeCCCCCCCccchhhhhHHHHHHHHHHHCcCEEEE
Confidence 8999998753 12234555677778844454
|
| >3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics, uncharacterized protein, protein struct initiative, PSI-2; 2.20A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=86.71 E-value=1.2 Score=40.01 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
++++.|+.+++.+..+++++|+||+-+|-=
T Consensus 91 ~~~~~r~~fi~si~~~~~~~gfDGiDiDwE 120 (319)
T 3cz8_A 91 NNPTARTNLVNNIYDLVSTRGYGGVTIDFE 120 (319)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 468899999999988888899999999974
|
| >2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* | Back alignment and structure |
|---|
Probab=86.00 E-value=3.9 Score=38.64 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=78.3
Q ss_pred HhhhhhHHHcCCCEEEeCCCCC-CCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCC
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR 124 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~ 124 (358)
.+-.+-+|+.|+..|-|+-=+- .-.-|.-..++|..++ ..++ .|=+++|+++|+++||++-+=+-+-
T Consensus 81 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~-~~~k-rDlv~el~~A~rk~Glk~GlY~S~~---------- 148 (450)
T 2wvv_A 81 KKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVAN-TPYK-RDILGELVKAYNDEGIDVHFYFSVM---------- 148 (450)
T ss_dssp HHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGG-STTC-SCHHHHHHHHHHHTTCEEEEEEESC----------
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCcccc-CCCC-CChHHHHHHHHHHcCCeEEEEecHH----------
Confidence 3446788999999998763110 0011111233444444 3343 6889999999999999998754321
Q ss_pred cceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHHHhc-CCCe
Q 018278 125 GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL-----NPRVQKELSDWMNWLKTEI-GFDG 198 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~-----n~~v~~~l~~~~~~w~~~~-gvDG 198 (358)
+|+...... + .++. .++..+++...++.+++.| .+|+
T Consensus 149 ---------------dw~~p~y~~------~----------------~~~~~~~~~~~~y~~~~~~Ql~ELlt~YG~~d~ 191 (450)
T 2wvv_A 149 ---------------DWSNPDYRY------D----------------IKSKEDSIAFSRFLEFTDNQLKELATRYPTVKD 191 (450)
T ss_dssp ---------------CTTCTTCCS------S----------------CCSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred ---------------HhcCCcccc------c----------------ccccccccchHHHHHHHHHHHHHHHHcCCCcCE
Confidence 121100000 0 0111 1355678888899999999 6999
Q ss_pred EeeccCCCCC----HHHHHH---HHHhcCCCeEEEecc
Q 018278 199 WRFDFVKGYA----PSITKV---YMENTSPDFAVGEKW 229 (358)
Q Consensus 199 fR~D~a~~i~----~~~~~~---~~~~~~p~~~~gE~~ 229 (358)
+=+|....-+ ...+.+ .+++..|..++.--|
T Consensus 192 lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vv~~r~ 229 (450)
T 2wvv_A 192 FWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRL 229 (450)
T ss_dssp EEEESCCSHHHHHTHHHHHHHHHHHHHHSTTCEEBGGG
T ss_pred EEEcCCCCcCcchhhHHHHHHHHHHHHhCCcEEEEccc
Confidence 9999865432 112233 355566755554443
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=85.80 E-value=2.1 Score=36.78 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=75.3
Q ss_pred CCchHHH-------HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 39 GGWYNSL-------KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 39 ~G~~~gl-------~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
||||-.+ .+-+++.++||+++|+++- | +..+. .++..++|+.+++.|++|+..+
T Consensus 74 GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~--------G-----~i~l~------~~~~~~~I~~~~~~G~~v~~Ev 134 (251)
T 1qwg_A 74 GGTLFEYAYSKGKFDEFLNECEKLGFEAVEISD--------G-----SSDIS------LEERNNAIKRAKDNGFMVLTEV 134 (251)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECC--------S-----SSCCC------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECC--------C-----cccCC------HHHHHHHHHHHHHCCCEEeeec
Confidence 6765433 2346788999999999872 2 22344 6889999999999999998776
Q ss_pred ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 018278 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (358)
Q Consensus 112 V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~ 191 (358)
|..++ .. . ...--..+++.++..+
T Consensus 135 -----G~k~~--~~---------------------~----------------------------~~~~~~~~I~~~~~~L 158 (251)
T 1qwg_A 135 -----GKKMP--DK---------------------D----------------------------KQLTIDDRIKLINFDL 158 (251)
T ss_dssp -----CCSSH--HH---------------------H----------------------------TTCCHHHHHHHHHHHH
T ss_pred -----cccCC--cc---------------------c----------------------------CCCCHHHHHHHHHHHH
Confidence 32210 00 0 0001245777777778
Q ss_pred HhcCCCeEeeccC------------CCCCHHHHHHHHHhcCCCeEEEecc
Q 018278 192 TEIGFDGWRFDFV------------KGYAPSITKVYMENTSPDFAVGEKW 229 (358)
Q Consensus 192 ~~~gvDGfR~D~a------------~~i~~~~~~~~~~~~~p~~~~gE~~ 229 (358)
+ .|++=.-+.+= ..+..+.+.+++....+--++-|+-
T Consensus 159 e-AGA~~ViiEarEsG~~iGi~~~~g~~r~d~v~~i~~~l~~eklifEAp 207 (251)
T 1qwg_A 159 D-AGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAP 207 (251)
T ss_dssp H-HTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECC
T ss_pred H-CCCcEEEEeeecccCCcccCCCCCCCcHHHHHHHHHhCChhhEEEECC
Confidence 7 79888888773 2445677888887765444666754
|
| >1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B* | Back alignment and structure |
|---|
Probab=85.53 E-value=2 Score=41.35 Aligned_cols=123 Identities=11% Similarity=0.073 Sum_probs=74.8
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCC---C---CCCCCCHHHHHHHHHHHHHcCCEEEEEe-ec
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDL---D---ASKYGSQADLKSLIQAFRQKGIKCLADM-VI 113 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~i---d---~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~-V~ 113 (358)
+.+.|.+.||.++..++|.+++-..= . ..|.|.+..|=.+ . +..+=|.+|++++|+-|.++||.||-.+ ++
T Consensus 166 ~~~~ik~~id~ma~~KlN~lh~HltD-d-q~wr~e~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~P 243 (507)
T 1now_A 166 PVKIILKTLDAMAFNKFNVLHWHIVD-D-QSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTP 243 (507)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCC-S-SCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeecc-C-ccceeeccchhhhhcccCcCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCc
Confidence 36778888999999999999986421 1 1244443222111 0 0122289999999999999999999988 78
Q ss_pred ccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 018278 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (358)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~ 193 (358)
.|+..--. .|-.+. ..|.+.. ...+. .--||-.+|++.+++.+++...++-
T Consensus 244 GH~~a~~~----~~p~L~-------------~~~~~~~---~~~~~---------~~~l~p~~~~t~~fl~~v~~Ev~~l 294 (507)
T 1now_A 244 GHTLSWGK----GQKDLL-------------TPCYSRQ---NKLDS---------FGPINPTLNTTYSFLTTFFKEISEV 294 (507)
T ss_dssp SSCTTHHH----HSTTCE-------------EECCC-------CCS---------EEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH----hCHHhc-------------ccCCCCC---CcCCC---------CcccCCCcHHHHHHHHHHHHHHHHh
Confidence 99864210 000000 0000000 00000 0018889999999999999988873
Q ss_pred c
Q 018278 194 I 194 (358)
Q Consensus 194 ~ 194 (358)
+
T Consensus 295 F 295 (507)
T 1now_A 295 F 295 (507)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A* | Back alignment and structure |
|---|
Probab=85.01 E-value=7 Score=39.18 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=48.7
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
+.+.+.+.++.++..+.|.+++-|- .. .+|++ ..+...- |.+ |.+++++||+.|+++||.||-.+-+
T Consensus 142 s~~~ik~~id~ma~~KlN~~h~hl~-Dd-p~~~~--~~wr~~y-P~l-t~~ei~elv~yA~~rgI~vvpeI~P 208 (716)
T 2cho_A 142 SHQARLSQLKFYGKNKMNTYIYGPK-DD-PYHSA--PNWRLPY-PDK-EAAQLQELVAVANENEVDFVWAIHP 208 (716)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECCT-TC-TTTST--TGGGSCC-CHH-HHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeec-cC-ccccc--ccccccC-Chh-hHHHHHHHHHHHHHcCCEEEEeecc
Confidence 4688888999999999999999762 11 13333 1122122 333 8999999999999999999987743
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=85.00 E-value=1.9 Score=32.76 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=33.3
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~Vi 108 (358)
+.+.+-++.+.++|+.+||+.|=+ .+ +++++.|++.||+|+
T Consensus 69 ~~v~~~v~e~~~~g~k~v~~~~G~---------------~~----------~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 69 QNQLSEYNYILSLKPKRVIFNPGT---------------EN----------EELEEILSENGIEPV 109 (122)
T ss_dssp HHHGGGHHHHHHHCCSEEEECTTC---------------CC----------HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCCC---------------Ch----------HHHHHHHHHcCCeEE
Confidence 445677888999999999997622 25 689999999999987
|
| >2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=84.92 E-value=3.3 Score=36.59 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHH
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~ 210 (358)
++++-|+.+++.+..+++++|+||+-+|-=.....+
T Consensus 105 ~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~ 140 (290)
T 2y8v_A 105 GDQEKFERYYQPLLAMVRRHQLDGLDLDVEEEMSLP 140 (290)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCSEEEEECCSCBCHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcccccchHH
Confidence 367788888888888888899999999975544433
|
| >3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A* | Back alignment and structure |
|---|
Probab=84.63 E-value=5.6 Score=38.30 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=75.1
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccC---------CCC--CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLY---------DLD--ASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~---------~id--~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+.+.|.+.||.++..++|.+++--. .. ..|.+.+..|= .+. +..+=|.+|++++|+-|.++||+||-
T Consensus 197 ~~~~ik~~id~mA~~KlN~lH~Hlt-Dd-qgwriei~~~P~Lt~~Ga~~~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP 274 (525)
T 3gh5_A 197 TVDEVKRQIDLASQYKINKFHMHLS-DD-QGWRIEIKSWPDLIEIGSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIP 274 (525)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECB-CS-SCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEec-cC-CccccccccchhhhhccCccccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 4678888899999999999998631 11 12222222111 111 01222799999999999999999999
Q ss_pred Ee-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018278 110 DM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (358)
Q Consensus 110 D~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~ 188 (358)
.+ ++.|+..--. .|-.+..... .+.. +. + .. .....||-.+|++.+++.+.+.
T Consensus 275 EID~PGH~~a~l~----~yp~L~~~~~-~~~~------------~~-~-------~~-~~~~~l~~~~~~ty~fl~~vl~ 328 (525)
T 3gh5_A 275 EIDMPGHTNAALA----SYGELNPDGK-RKAM------------RT-D-------TA-VGYSTLMPRAEITYQFVEDVIS 328 (525)
T ss_dssp ECCCSSSCHHHHH----HCGGGSTTSC-CCCC------------CC-S-------CC-CSCCCCCTTCHHHHHHHHHHHH
T ss_pred EecccchHHHHHH----hChhhccCCC-CCcc------------cc-c-------CC-CCCcccCCCChhHHHHHHHHHH
Confidence 98 6788864210 0101110000 0000 00 0 00 0012388899999999999999
Q ss_pred HHHHhc
Q 018278 189 WLKTEI 194 (358)
Q Consensus 189 ~w~~~~ 194 (358)
..++-+
T Consensus 329 Ev~~lF 334 (525)
T 3gh5_A 329 ELAAIS 334 (525)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 988743
|
| >4ac1_X Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, glycoside hydrolase family 18, deglycosylation; HET: NAG; 1.30A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=84.21 E-value=9.6 Score=33.43 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=62.3
Q ss_pred HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCC
Q 018278 54 NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG 133 (358)
Q Consensus 54 ~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~ 133 (358)
..++|+|-+.-+.-. ..|+-.. .+.. |.-...+.+.+=|++||++|+||++=+ |.... +
T Consensus 30 ~~~~THi~~af~~~~--~~g~i~~--~d~~-p~~~~~~~l~~~i~~~q~~g~Kvllsi-----GG~~~---g-------- 88 (283)
T 4ac1_X 30 GIALTHLIVCSFHIN--QGGVVHL--NDFP-PDDPHFYTLWNETITMKQAGVKVMGMV-----GGAAP---G-------- 88 (283)
T ss_dssp SCCCCEEEEEEEECC--TTSCCEE--TTBC-TTSGGGHHHHHHHHHHHHTTCEEEEEE-----ETTSS---C--------
T ss_pred CCCccEEEEEEEEEC--CCCeEEE--CCCC-ccchHHHHHHHHHHHHHcCCCEEEEEE-----cCCCC---C--------
Confidence 367899877644332 2343211 1222 322334566667889999999999874 22110 0
Q ss_pred CCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHH
Q 018278 134 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK 213 (358)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~ 213 (358)
.+. ... .+-.+++.++.+...+...++++|+||+-+|-=.....+.+.
T Consensus 89 ------~~~---------~~~-----------------~~~~~~~~~~~f~~~~~~~~~~~~~dG~D~d~e~~~~~~~~~ 136 (283)
T 4ac1_X 89 ------SFN---------TQT-----------------LDSPDSATFEHYYGQLRDAIVNFQLEGMDLDVEQPMSQQGID 136 (283)
T ss_dssp ------SSS---------TTT-----------------TTCSSHHHHHHHHHHHHHHHHHTTCSEEEEECCSCBCHHHHH
T ss_pred ------CCc---------ccc-----------------cccccHHHHHHHHHHHHHHHHHcCCCceEeecccCCCHHHHH
Confidence 000 000 223446666666667766677799999999987666654333
Q ss_pred HH
Q 018278 214 VY 215 (358)
Q Consensus 214 ~~ 215 (358)
.+
T Consensus 137 ~l 138 (283)
T 4ac1_X 137 RL 138 (283)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A* | Back alignment and structure |
|---|
Probab=84.16 E-value=0.81 Score=47.08 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh-------cCCCeEeeccC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTE-------IGFDGWRFDFV 204 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~-------~gvDGfR~D~a 204 (358)
.|+.||++|+.-.+.++.+.++ .|||||=+|+.
T Consensus 432 pDftnp~ar~WW~~~~~~~~~~~~~~~~~~gvdg~W~Dmn 471 (908)
T 3top_A 432 PDFFRNSTAKWWKREIEELYNNPQNPERSLKFDGMWIDMN 471 (908)
T ss_dssp BCTTSHHHHHHHHHHHHHHHSCSSCGGGCCCCSEEEECST
T ss_pred ccCCCHHHHHHHHHHHHHHHhccccccccCCccEEEEecC
Confidence 7889999999999988888763 79999999984
|
| >4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.67 E-value=1.2 Score=40.40 Aligned_cols=84 Identities=7% Similarity=0.028 Sum_probs=52.0
Q ss_pred ceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCcc--ccCCCCCCCCCCHHHHHHHHHHHH
Q 018278 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPG--RLYDLDASKYGSQADLKSLIQAFR 101 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~--d~~~id~~~~Gt~~d~~~Lv~~~H 101 (358)
+++++-..||.+...- |-+...+.+.++|++|++.|-|. .....|+... -+..-....-...+-+++++++|+
T Consensus 36 gtfld~~~~d~~~qnW-d~~eW~~~~~~mK~~GikyvIl~----~~~~~gf~~~pS~~~~~~~~~~p~~Dlv~~~l~aa~ 110 (340)
T 4h41_A 36 GTFLDEISHDIPHQNW-GEKEWDLDFQHMKRIGIDTVIMI----RSGYRKFMTYPSPYLLKKGCYMPSVDLVDMYLRLAE 110 (340)
T ss_dssp EEEECTTCSSSCCCCC-CHHHHHHHHHHHHHTTCCEEEES----CSEETTEESSCCHHHHHTTCCCCSBCHHHHHHHHHH
T ss_pred EEEehhhcCCCcccCC-CHHHHHHHHHHHHHcCCCEEEEE----EEeeCCeeccCcccccccCccCCcccHHHHHHHHHH
Confidence 4666655566554422 24667788999999999999875 2223343321 110000011123566889999999
Q ss_pred HcCCEEEEEee
Q 018278 102 QKGIKCLADMV 112 (358)
Q Consensus 102 ~~Gi~VilD~V 112 (358)
++||+|.+-+-
T Consensus 111 k~Gmkv~~Gly 121 (340)
T 4h41_A 111 KYNMKFYFGLY 121 (340)
T ss_dssp HTTCEEEEECC
T ss_pred HhCCeEEEecC
Confidence 99999998753
|
| >3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A | Back alignment and structure |
|---|
Probab=83.58 E-value=1.1 Score=40.22 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
.+++.|+.+++.+..+++++|+||+-+|-=
T Consensus 85 ~~~~~r~~fi~si~~~~~~~~~DGiDiDwE 114 (312)
T 3fnd_A 85 NDPKARKELIQQIIAFTKEYKLDGFDIDYE 114 (312)
T ss_dssp HSHHHHHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEeee
Confidence 367889999999888888899999999964
|
| >3kzs_A Glycosyl hydrolase family 5; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.46 E-value=3.4 Score=39.11 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=48.9
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCC------ccccCCCCCCC--CCCHHHHHHHHHHHHHcCCEEEE
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM------PGRLYDLDASK--YGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~------~~d~~~id~~~--~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
-+......-|+..|+-|||.|+++=+.+.+..+.|. ..||.+++ +. ..=-+-+..+|+.|+++||.+-|
T Consensus 49 l~~~e~~~yL~~R~~qGFNvIq~~vl~~~p~~n~~g~~pf~~~~df~~~n-~pn~~~YF~h~d~~I~~a~~~Gi~~~L 125 (463)
T 3kzs_A 49 LNRDEAEYYLEQCKRRGYNVIQVQTLNNVPSMNIYGQYSMTDGYNFKNIN-QKGVYGYWDHMDYIIRTAAKKGLYIGM 125 (463)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEESCSSSSCBCTTSCBSCSSTTCCTTCC-CTTCCCHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeecCCCCCCcCCCCCcCCCcccccCC-CcCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 455677778999999999999997542222111111 14667777 42 35578899999999999999887
|
| >1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6 | Back alignment and structure |
|---|
Probab=82.31 E-value=5 Score=36.79 Aligned_cols=137 Identities=16% Similarity=0.102 Sum_probs=78.2
Q ss_pred EEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccc---------------cCCCC-CCCCCCH
Q 018278 27 FQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR---------------LYDLD-ASKYGSQ 90 (358)
Q Consensus 27 ~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d---------------~~~id-~~~~Gt~ 90 (358)
+..++.|.-... =+.+.|.+.||.++..++|.+++-= ... ..+.+.+.- |.... ...+=|.
T Consensus 18 ~RG~mLDvaR~f-~~~~~ik~~id~mA~~KlN~lH~Hl-tDd-q~~rle~~~~~~~~~~~~~~~~g~~~~~~~~~g~YT~ 94 (367)
T 1yht_A 18 QTGLMLDIARHF-YSPEVIKSFIDTISLSGGNFLHLHF-SDH-ENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSY 94 (367)
T ss_dssp EEEEEEECSSSC-CCHHHHHHHHHHHHHTTCCEEEEEC-BSS-SCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCH
T ss_pred ceeEEEecCCCC-CCHHHHHHHHHHHHHcCCcEEEEEE-EcC-CCceeeecchhhhhhhhccccCCCcCCCCCCCCCcCH
Confidence 455554543321 2478888889999999999998742 111 012221110 11111 0012279
Q ss_pred HHHHHHHHHHHHcCCEEEEEe-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCC
Q 018278 91 ADLKSLIQAFRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (358)
+|++++|+-|.++||+||-.+ ++.|+...-. ...-..+. .|.. .. . ..+ +.+
T Consensus 95 ~di~eiv~YA~~rgI~VIPEID~PGH~~a~l~-----~~~~~~~~-----~~~~-~~-~--~~~---~~~---------- 147 (367)
T 1yht_A 95 RQLDDIKAYAKAKGIELIPELDSPNHMTAIFK-----LVQKDRGV-----KYLQ-GL-K--SRQ---VDD---------- 147 (367)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEESSSCHHHHH-----HHHHHHCH-----HHHH-HH-B--CSS---CTT----------
T ss_pred HHHHHHHHHHHHcCCEEEEeccchHHHHHHHH-----hcccccCc-----cccc-cc-C--CCC---CCc----------
Confidence 999999999999999999998 7888864210 00000000 0000 00 0 000 001
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 170 PDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 170 ~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
.||-.+|++.+++.+++...++-+
T Consensus 148 -~l~~~~~~t~~fl~~v~~Ev~~lF 171 (367)
T 1yht_A 148 -EIDITNADSITFMQSLMSEVIDIF 171 (367)
T ss_dssp -SBCTTCHHHHHHHHHHHHHHHHHH
T ss_pred -eeCCCCHHHHHHHHHHHHHHHHhc
Confidence 188999999999999998888744
|
| >3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=82.22 E-value=1.2 Score=43.86 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=42.5
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCC--CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQS--VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~--~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
-+.+.+.|..+|++|+|+|.+.=.+.. +....| | |...+++.++++.|+++||+||+..-
T Consensus 36 ~e~w~~dl~~mK~~G~N~Vrt~v~W~~hEP~~G~y---d--------f~gl~~l~~fl~la~e~GL~VIl~~g 97 (612)
T 3d3a_A 36 KEYWEHRIKMCKALGMNTICLYVFWNFHEPEEGRY---D--------FAGQKDIAAFCRLAQENGMYVIVRPG 97 (612)
T ss_dssp GGGHHHHHHHHHHHTCCEEEEECCHHHHCSSTTCC---C--------CSGGGCHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEcChHHhcCCCCCcc---C--------hhHHHHHHHHHHHHHHCCCEEEEecC
Confidence 466778899999999999998633221 011112 2 23355789999999999999998753
|
| >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=81.97 E-value=4.1 Score=36.07 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=48.3
Q ss_pred hcCCCCCCceEEEeeecCCCCCCCCch--HHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHH
Q 018278 16 IFLPFTSPALLFQGFNWESSNKAGGWY--NSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~~~~~~~~G~~--~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d 92 (358)
.+++-....+=+|.|.+. +. +++.+.|+.++++|+++|+|.+.-+... .+++.+.+ -+.++
T Consensus 14 ~~~~~~~~~~g~~~~s~~-------~~~~~~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~---------~~~~~ 77 (305)
T 3obe_A 14 VSSATAGKKMGLQTYSLG-------QELLQDMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKN---------TTFIA 77 (305)
T ss_dssp CCTTCCCCCCEEEGGGGT-------HHHHTTHHHHHHHHHHHTCCEEEECCBCTTTCCBCCC-------------CCCBC
T ss_pred ccccccCCceEEEEEEch-------hhhhcCHHHHHHHHHHcCCCEEEecccccccccccCcCccc---------ccccC
Confidence 345556667888888642 22 3678899999999999999986422211 12333322 12224
Q ss_pred HHHHHHHHHHcCCEEE
Q 018278 93 LKSLIQAFRQKGIKCL 108 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~Vi 108 (358)
.+++.+.+.+.||+|.
T Consensus 78 ~~~l~~~l~~~GL~i~ 93 (305)
T 3obe_A 78 SKDYKKMVDDAGLRIS 93 (305)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCeEE
Confidence 5666677788999985
|
| >3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* | Back alignment and structure |
|---|
Probab=80.21 E-value=0.91 Score=44.76 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=39.9
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCC--CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPPSQS--VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi~~~--~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+-..+.|..+|++|+|+|.+ ++.=+ ....| ..| |....||.++++.|+++||+||+..
T Consensus 40 ~~W~d~l~kmKa~G~NtV~~-yv~W~~hEP~~G--~fd--------F~g~~DL~~fl~~a~~~GL~ViLr~ 99 (654)
T 3thd_A 40 FYWKDRLLKMKMAGLNAIQT-YVPWNFHEPWPG--QYQ--------FSEDHDVEYFLRLAHELGLLVILRP 99 (654)
T ss_dssp GGHHHHHHHHHHTTCSEEEE-ECCHHHHCSBTT--BCC--------CSGGGCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEE-EechhhcCCCCC--ccC--------ccchHHHHHHHHHHHHcCCEEEecc
Confidence 45667888999999999999 43211 00111 111 2234568999999999999999974
|
| >3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=80.13 E-value=6.3 Score=37.03 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=76.9
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCCCCC--CCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKY--GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD 122 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~--Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~ 122 (358)
.+-.+-+|+.|+..|-|+-=+-. -..|.-..+++...+ +.+ |..|=+++|+++|+++||++-+=+-+. ..++
T Consensus 62 ~~w~~~~k~aGaky~v~t~kHHdGf~lw~s~~t~~~~~~-sp~~~~~~D~v~e~~~A~r~~gl~~g~Y~S~~---W~~~- 136 (443)
T 3gza_A 62 DQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNPYCLKA-VKWRDGKGDIVRDFVNSCRKYGLQPGIYIGIR---WNSL- 136 (443)
T ss_dssp HHHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCSSBGGG-SSGGGGTCCHHHHHHHHHHHHTCEEEEEECCS---CBTT-
T ss_pred HHHHHHHHHcCCCEEEEeeEeCCCcccCCCCCCCccccc-CCccCCCcCHHHHHHHHHHHcCCeEEEEECcc---ccCc-
Confidence 35567889999999987742110 011111223332223 333 346889999999999999998765431 1100
Q ss_pred CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEee
Q 018278 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG-FDGWRF 201 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~g-vDGfR~ 201 (358)
. .|..... .....+. -+ ..++-.+++...++.++..|| ||.+=+
T Consensus 137 --~--------------~~~~~~~-~~~~~~~-----------------~~-~~~~y~~~~~~Ql~ELlt~Ygpid~lWf 181 (443)
T 3gza_A 137 --L--------------GIHNFKA-EGEGAFA-----------------RN-RQAWYKRLCEKMVTELCTRYGDLYMIWF 181 (443)
T ss_dssp --T--------------TEETTEE-SCCHHHH-----------------HH-HHHHHHHHHHHHHHHHHHSSCCCSEEEE
T ss_pred --c--------------ccccccc-ccccccC-----------------cc-ccHHHHHHHHHHHHHHHHhCCCccEEEE
Confidence 0 0000000 0000000 00 014456788889999999998 699999
Q ss_pred ccCCCCCHH---HHHHHHHhcCCCeEE
Q 018278 202 DFVKGYAPS---ITKVYMENTSPDFAV 225 (358)
Q Consensus 202 D~a~~i~~~---~~~~~~~~~~p~~~~ 225 (358)
|....-+.. -+.+++++..|-.++
T Consensus 182 Dg~~~~~~~~~~~~~~~i~~~qP~~vi 208 (443)
T 3gza_A 182 DGGADDPRADGPDVEPIVNKYQPNCLF 208 (443)
T ss_dssp TTCCCCTTTTSCCCHHHHHHHCTTSEE
T ss_pred eCCCCccccCHHHHHHHHHHHCcCEEE
Confidence 998644321 123456666774444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 358 | ||||
| d1ht6a2 | 347 | c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor | 2e-73 | |
| d1gcya2 | 357 | c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m | 4e-51 | |
| d1mxga2 | 361 | c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo | 7e-45 | |
| d2d3na2 | 394 | c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu | 6e-43 | |
| d1e43a2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera | 8e-40 | |
| d1jaea2 | 378 | c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea | 3e-38 | |
| d1hvxa2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillu | 1e-35 | |
| d1ud2a2 | 390 | c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu | 9e-34 | |
| d1hx0a2 | 403 | c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s | 7e-32 | |
| d1g94a2 | 354 | c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa | 1e-29 | |
| d1j0ha3 | 382 | c.1.8.1 (A:124-505) Neopullulanase, central domain | 1e-21 | |
| d1wzaa2 | 409 | c.1.8.1 (A:28-436) Bacterial alpha-amylase {Haloth | 2e-20 | |
| d1wzla3 | 382 | c.1.8.1 (A:121-502) Maltogenic amylase, central do | 1e-19 | |
| d1ua7a2 | 344 | c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu | 2e-19 | |
| d1ea9c3 | 382 | c.1.8.1 (C:122-503) Maltogenic amylase, central do | 1e-18 | |
| d1iv8a2 | 653 | c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase | 2e-18 | |
| d1m53a2 | 478 | c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle | 7e-18 | |
| d2aaaa2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 3e-17 | |
| d1ji1a3 | 432 | c.1.8.1 (A:123-554) Maltogenic amylase, central do | 4e-17 | |
| d1g5aa2 | 554 | c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysacc | 5e-17 | |
| d2guya2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 3e-16 | |
| d1lwha2 | 391 | c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Ther | 9e-16 | |
| d1uoka2 | 479 | c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus | 1e-15 | |
| d1qhoa4 | 407 | c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase | 3e-15 | |
| d1h3ga3 | 422 | c.1.8.1 (A:96-517) Cyclomaltodextrinase, central d | 1e-14 | |
| d3bmva4 | 406 | c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase | 2e-13 | |
| d1eh9a3 | 400 | c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol | 3e-13 | |
| d1bf2a3 | 475 | c.1.8.1 (A:163-637) Isoamylase, central domain {Ps | 2e-12 | |
| d1m7xa3 | 396 | c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz | 2e-12 | |
| d2bhua3 | 420 | c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydro | 7e-11 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 7e-11 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 0.004 | |
| d1r7aa2 | 434 | c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobac | 2e-04 | |
| d2fhfa5 | 563 | c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella p | 5e-04 |
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Score = 229 bits (584), Expect = 2e-73
Identities = 208/320 (65%), Positives = 248/320 (77%), Gaps = 3/320 (0%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDA 84
+LFQGFNWES ++GGWYN + + D++ AG+THVWLPPPS SV+ +GYMPGRLYD+DA
Sbjct: 3 VLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDA 62
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
SKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGTSD RLDWGP
Sbjct: 63 SKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122
Query: 145 FICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204
ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++GFD WR DF
Sbjct: 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFA 182
Query: 205 KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG---A 261
+GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +WV GG A
Sbjct: 183 RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASA 242
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDTGSTQ +WPFP
Sbjct: 243 GMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFP 302
Query: 322 SDKVMLGYAYILTHPGTPCI 341
SDKVM GYAYILTHPG PCI
Sbjct: 303 SDKVMQGYAYILTHPGIPCI 322
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Score = 172 bits (435), Expect = 4e-51
Identities = 89/334 (26%), Positives = 136/334 (40%), Gaps = 37/334 (11%)
Query: 25 LLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPP----------SQSVAPQG 73
++ QGF+W +A WYN L+ ++ G + +W+P P S+S +G
Sbjct: 18 IILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEG 77
Query: 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG 133
Y ++ + +YGS A L+ A G+K L D+V NH D +G
Sbjct: 78 YFW-HDFNKN-GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGF 135
Query: 134 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193
+D D G + DD D++ +P+V D L+++
Sbjct: 136 WRNDCADPG-----------NYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQ 184
Query: 194 IGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 253
G G+RFDFV+GYAP +M +++ + + N + +KD
Sbjct: 185 YGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKD 244
Query: 254 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 313
W A V FDF K +Q + + N P + AVTF+DNHDTG
Sbjct: 245 WSDRAKCPV--FDFALKERMQNGSIADWKHGLNGNPDPRW-----REVAVTFVDNHDTGY 297
Query: 314 T------QRLWPFPSDKVMLGYAYILTHPGTPCI 341
+ Q W + YAYILT PGTP +
Sbjct: 298 SPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVV 331
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 155 bits (393), Expect = 7e-45
Identities = 85/328 (25%), Positives = 133/328 (40%), Gaps = 37/328 (11%)
Query: 25 LLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYD 81
++ Q F W+ G W++ +++ IP+ AGI+ +WLPPPS+ ++ GY P +D
Sbjct: 11 VIMQAFYWDVPGG-GIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFD 69
Query: 82 LD--------ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG 133
L +++GS+ +L LIQ GIK +AD+VINHR + +
Sbjct: 70 LGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWT 129
Query: 134 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193
+ ++ T F + + ++
Sbjct: 130 DFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRS 189
Query: 194 IGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 253
IGFDGWRFD+VKGY + + ++ N +AVGE W D + AL
Sbjct: 190 IGFDGWRFDYVKGYGAWVVRDWL-NWWGGWAVGEYW---------------DTNVDALLS 233
Query: 254 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 313
W +G V F K + +A + L + + P AVTF+ NHDT
Sbjct: 234 WAYESGAKVFDFPLYYK-MDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDI 292
Query: 314 TQRLWPFPSDKVMLGYAYILTHPGTPCI 341
+ YA+ILT+ G P I
Sbjct: 293 IWNKY--------PAYAFILTYEGQPVI 312
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Score = 151 bits (381), Expect = 6e-43
Identities = 86/371 (23%), Positives = 139/371 (37%), Gaps = 68/371 (18%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLD 83
+ Q F W N G +N L + +L + GIT VW+PP + + GY LYDL
Sbjct: 5 MMQYFEWYLPND-GNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLG 63
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINH----------------RTAE 119
+KYG+++ L++ + + + GI+ D+V+NH
Sbjct: 64 EFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNR 123
Query: 120 RKDGRGIYCIFEGGTSD------------------DRLDWGPSFICRGDKEYSDGQGNDD 161
++ G Y I D D +DW S G G
Sbjct: 124 NQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAW 183
Query: 162 TGED--------FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK 213
E + DID +P V EL +W W +G DG+R D VK S T+
Sbjct: 184 DWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFTR 243
Query: 214 VYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKG-I 272
++ + + + D GA+++++Q + FD +
Sbjct: 244 DWINHVRSATGKNMFAVAEFWKND----------LGAIENYLQKTNWNHSVFDVPLHYNL 293
Query: 273 LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAY 331
A+ G + +++ + P +AVTF+DNHD+ + L F + L YA
Sbjct: 294 YNASKSGGNYDMRNIFNGTV--VQRHPSHAVTFVDNHDSQPEEALESFVEEWFKPLAYAL 351
Query: 332 ILTH-PGTPCI 341
LT G P +
Sbjct: 352 TLTREQGYPSV 362
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Score = 143 bits (360), Expect = 8e-40
Identities = 87/370 (23%), Positives = 142/370 (38%), Gaps = 67/370 (18%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLD 83
L Q F W + N G + L+N LS+ GIT VW+PP + + + GY P LYDL
Sbjct: 5 LMQYFEWYTPND-GQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLG 63
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINH-------------------- 115
+KYG++++L+ I + + ++ D+V+NH
Sbjct: 64 EFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANR 123
Query: 116 --------------------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 155
R D + + F+G D+ F RG+ + D
Sbjct: 124 NQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWD 183
Query: 156 GQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
+ + + G D+ D+D+ +P V E W W E+ DG+R D K S +
Sbjct: 184 WEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRD 243
Query: 215 YMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQ 274
+++ + + + G L++++ + FD LQ
Sbjct: 244 WVQAVRQATGKEMFTVAEYWQNN----------AGKLENYLNKTSFNQSVFDVPLHFNLQ 293
Query: 275 AAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYI 332
AA QG + ++ + P +VTF+DNHDT Q L L YA+I
Sbjct: 294 AASSQGGGYDMRKLLNG--TVVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKPLAYAFI 351
Query: 333 LTH-PGTPCI 341
LT G P +
Sbjct: 352 LTRESGYPQV 361
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Score = 138 bits (348), Expect = 3e-38
Identities = 61/324 (18%), Positives = 106/324 (32%), Gaps = 22/324 (6%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD-- 83
+ F W+ W + L G V + PP++ + G Y
Sbjct: 13 IVHLFEWK-------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY 65
Query: 84 --ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDW 141
++ G ++ + + G++ D VINH T G G + + +
Sbjct: 66 IINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPY 125
Query: 142 GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201
G + + ++ + D++ + V+ L D+MN + ++G G+R
Sbjct: 126 GSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHM-IDLGVAGFRV 184
Query: 202 DFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA 261
D K +P V D + D A+ G
Sbjct: 185 DAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQE---VIDLGGEAISKNEYTGFGC 241
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT---GSTQRLW 318
V F F +L L + P + + +AV F+DNHD G +Q L
Sbjct: 242 VLEFQFGVSLGNAFQGGNQLKNLANWG---PEWGLLEGLDAVVFVDNHDNQRTGGSQILT 298
Query: 319 PFPSDKVMLGYAYILTHP-GTPCI 341
+ A++L HP GT I
Sbjct: 299 YKNPKPYKMAIAFMLAHPYGTTRI 322
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 131 bits (330), Expect = 1e-35
Identities = 91/376 (24%), Positives = 135/376 (35%), Gaps = 79/376 (21%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLD 83
+ Q F W + G + + N +LS+ GIT +WLPP S + GY LYDL
Sbjct: 8 MMQYFEWYLPDD-GTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLG 66
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINH-------------------- 115
+KYG++A IQA G++ AD+V +H
Sbjct: 67 EFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDR 126
Query: 116 --------------------RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 155
R + + F+G D+ + RG + D
Sbjct: 127 NQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWD 186
Query: 156 GQ-GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
+ ++ D+ D+D +P V EL W W DG+R D VK S
Sbjct: 187 WEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFPD 246
Query: 215 YME-----NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 269
++ P F VGE W L +++ G ++ FD
Sbjct: 247 WLSYVRSQTGKPLFTVGEYW---------------SYDINKLHNYIMKTNGTMSLFDAPL 291
Query: 270 KGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT--GSTQRLWPFPSDKVM 326
A + G + ++ + P AVTF+DNHDT G + W P K
Sbjct: 292 HNKFYTASKSGGTFDMRTLMTN--TLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFK-P 348
Query: 327 LGYAYILT-HPGTPCI 341
L YA+ILT G PC+
Sbjct: 349 LAYAFILTRQEGYPCV 364
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Score = 126 bits (317), Expect = 9e-34
Identities = 84/367 (22%), Positives = 130/367 (35%), Gaps = 63/367 (17%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLD 83
+ Q + W G +N L + LS+AGIT +W+PP S A GY LYDL
Sbjct: 7 MMQYYEWHL-ENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLG 65
Query: 84 A--------SKYGSQADLKSLIQAFRQKGIKCLADMVINH----------------RTAE 119
+KYG++A L+ I + + I D+V+NH T
Sbjct: 66 EFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNR 125
Query: 120 RKDGRGIYCI----------FEGGTSDDRLDW-------------GPSFICRGDKEYSDG 156
+D G Y I SD + W + ++
Sbjct: 126 WQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWR 185
Query: 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM 216
++ D+ +ID +P VQ EL DW +W E+ DG+R D +K T ++
Sbjct: 186 VDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWV 245
Query: 217 ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAA 276
+ + + D +A+
Sbjct: 246 RHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDV---------PLNYNFYRAS 296
Query: 277 VQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKV-MLGYAYILTH 335
QG + ++ N + P +AVTF+DNHDT + L + +D L YA ILT
Sbjct: 297 QQGGSYDMR--NILRGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTR 354
Query: 336 -PGTPCI 341
G P +
Sbjct: 355 EGGYPNV 361
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 121 bits (305), Expect = 7e-32
Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 42/345 (12%)
Query: 26 LFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP--------QGYMPG 77
+ F W W + L G V + PP++++ + Y P
Sbjct: 13 IVHLFEWR-------WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQP- 64
Query: 78 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE-----------RKDGRGI 126
Y L ++ G++ + + ++ G++ D VINH G
Sbjct: 65 VSYKLC-TRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGN 123
Query: 127 YCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDW 186
S + G G E + D+ V+ ++D+
Sbjct: 124 REFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDC-QLVGLLDLALEKDYVRSMIADY 182
Query: 187 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDG 246
+N L +IG G+R D K P K ++ S + D +
Sbjct: 183 LNKL-IDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGE- 240
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFI 306
A+K G V F + K + ++ G+ + A+ F+
Sbjct: 241 ---AIKSSEYFGNGRVTEFKYGAKLG-TVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFV 296
Query: 307 DNHDT------GSTQRLWPFPSDKVMLGYAYILTHP-GTPCIVIS 344
DNHD G + L + + + ++L HP G ++ S
Sbjct: 297 DNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSS 341
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Score = 114 bits (287), Expect = 1e-29
Identities = 61/331 (18%), Positives = 104/331 (31%), Gaps = 41/331 (12%)
Query: 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP----QGYMPG 77
+P F W W + + L G V + PP++ + Y P
Sbjct: 1 TPTTFVHLFEWN-------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQP- 52
Query: 78 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDD 137
Y+L S+ G++A ++ G+ D +INH A F +
Sbjct: 53 VSYELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDTLINH-MAAGSGTGTAGNSFGNKSFPI 110
Query: 138 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197
C + + D+D + VQ ++ ++N IG
Sbjct: 111 YSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND-LQAIGVK 169
Query: 198 GWRFDFVKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 256
G+RFD K A S + M + E D A+
Sbjct: 170 GFRFDASKHVAASDIQSLMAKVNGSPVVFQEVI---------------DQGGEAVGASEY 214
Query: 257 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT----- 311
+ G V F ++T+ L + G+ + +AV F+DNHD
Sbjct: 215 LSTGLVTEFKYSTELGNTFRN----GSLAWLSNFGEGWGFMPSSSAVVFVDNHDNQRGHG 270
Query: 312 GSTQRLWPFPSDKVMLGYAYILTHP-GTPCI 341
G+ + L ++L +P G P +
Sbjct: 271 GAGNVITFEDGRLYDLANVFMLAYPYGYPKV 301
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Score = 92.8 bits (229), Expect = 1e-21
Identities = 57/315 (18%), Positives = 101/315 (32%), Gaps = 19/315 (6%)
Query: 27 FQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASK 86
+ + ++ GG + + + L + GIT ++L P +S + Y +++D
Sbjct: 37 WGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVD-PH 95
Query: 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI 146
+G + LK+LI +KGI+ + D V NH E + ++ E D +
Sbjct: 96 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 155
Query: 147 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206
+ D P ++ NP V++ L D + E DGWR D
Sbjct: 156 QTEPRPNYDTFAFVPQM------PKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANE 209
Query: 207 YAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFD 266
+F + + + PD Q F
Sbjct: 210 I------------DHEFWREFRQEVKALKPDVYILGEIWHDAMPWLRGDQFDAVMNYPFT 257
Query: 267 FTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM 326
+ + + A + +HDT + KV
Sbjct: 258 DGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVK 317
Query: 327 LGYAYILTHPGTPCI 341
L + + LT G+PCI
Sbjct: 318 LLFLFQLTFTGSPCI 332
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Score = 89.3 bits (220), Expect = 2e-20
Identities = 62/309 (20%), Positives = 100/309 (32%), Gaps = 31/309 (10%)
Query: 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108
+++ G+ +WL P +S + GY Y ++ YG+ D L++A Q+GIK +
Sbjct: 41 PETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKIN-PDYGTLEDFHKLVEAAHQRGIKVI 99
Query: 109 ADMVI-----NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTG 163
D+ I H + + G + + G
Sbjct: 100 IDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYG 159
Query: 164 EDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT----------- 212
+ PD+++ NP VQ+++ + + G DG+R D P
Sbjct: 160 YFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIFPPAQYDKNFTWWEKF 218
Query: 213 KVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGI 272
+ +E P + VGE WD L + V A A F F K
Sbjct: 219 RQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKK-- 276
Query: 273 LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYI 332
K G +G F+ NHD +K + +
Sbjct: 277 -----------AKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARVAASIY 325
Query: 333 LTHPGTPCI 341
LT PG P I
Sbjct: 326 LTLPGNPFI 334
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Score = 86.7 bits (213), Expect = 1e-19
Identities = 54/303 (17%), Positives = 89/303 (29%), Gaps = 19/303 (6%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQ 98
GG + + +P L G+T ++ P S + Y +D ++G + L+
Sbjct: 49 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAID-PQFGDLPTFRRLVD 107
Query: 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158
++GIK + D V NH + R + E D +
Sbjct: 108 EAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFI-----EDFPVSKTSRTN 162
Query: 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMEN 218
+ P + NP V++ L D + E G DGWR D +V
Sbjct: 163 YETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVAN-------EVDHAF 214
Query: 219 TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ 278
+ + + + G D V + F G + A
Sbjct: 215 WREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATGEIHAERF 274
Query: 279 GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGT 338
Q +D+HDT K L + +T+ GT
Sbjct: 275 DAELTRARMLYPEQA-----AQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGT 329
Query: 339 PCI 341
P I
Sbjct: 330 PLI 332
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Score = 86.1 bits (212), Expect = 2e-19
Identities = 59/335 (17%), Positives = 106/335 (31%), Gaps = 65/335 (19%)
Query: 28 QGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ-----------GYMP 76
+NW +N+LK+++ D+ +AG T + P +Q Y P
Sbjct: 10 HAWNWS--------FNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQP 61
Query: 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD 136
+ G++ + K + A + GIK + D VINH F+
Sbjct: 62 TSYQIGN-RYLGTEQEFKEMCAAAEEYGIKVIVDAVINH------------TTFDYAAIS 108
Query: 137 DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196
+ + P++ + + D T D + N +VQ L ++ G
Sbjct: 109 NEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERA-LNDGA 167
Query: 197 DGWRFDFVKGYAPSITK-------VYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRG 249
DG+RFD K + NTS +F GE
Sbjct: 168 DGFRFDAAKHIELPDDGSYGSQFWPNITNTSAEFQYGEILQD---------------SAS 212
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
+ + + + + L+ + + VT++++H
Sbjct: 213 RDAAYANYMDVTASNYGHSIRSALKNR-NLGVSNISHYASDVS------ADKLVTWVESH 265
Query: 310 DT--GSTQRLWPFPSDKVMLGYAYILTHP-GTPCI 341
DT + D + LG+A I + TP
Sbjct: 266 DTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLF 300
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Score = 84.0 bits (206), Expect = 1e-18
Identities = 61/320 (19%), Positives = 106/320 (33%), Gaps = 18/320 (5%)
Query: 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYD 81
L + + S GG + + + LS G+ V+ P ++ Y +
Sbjct: 30 EGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQ 89
Query: 82 LDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDW 141
+D ++G + LK L+ ++GI+ L D V NH + + + G DW
Sbjct: 90 ID-PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHS---GRTFPPFVDVLKNGEKSKYKDW 145
Query: 142 GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201
+ + E P ++ +P V++ L + E G DGWR
Sbjct: 146 FHIRSLPLEVVDGIPTYDTFAFEPLM--PKLNTEHPDVKEYLLKAAEYWIRETGIDGWRL 203
Query: 202 DFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA 261
D V + V ++ + +Y + G D V
Sbjct: 204 DVANE-------VSHQFWREFRRVVKQANPDAYILGEVWHESSIWLEGDQFDAVMNYPFT 256
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 321
A DF I A + + + G+ + +D+HDT
Sbjct: 257 NAVLDFFIHQIADAEKFSFMLGKQLA-----GYPRQASEVMFNLLDSHDTARLLTQADGD 311
Query: 322 SDKVMLGYAYILTHPGTPCI 341
K+ L + T+ GTPCI
Sbjct: 312 KRKMKLAVLFQFTYFGTPCI 331
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 84.2 bits (208), Expect = 2e-18
Identities = 35/319 (10%), Positives = 82/319 (25%), Gaps = 74/319 (23%)
Query: 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKS 95
+ + +++ + G++H++L P + + GY ++ + G + + +
Sbjct: 12 KNFNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRIN-DELGGEKEYRR 70
Query: 96 LIQAFRQKGIKCLADMVINH---------------------------------RTAERKD 122
LI+ G+ + D+V NH +
Sbjct: 71 LIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYYTYFDFFPEDDKIRLPIL 130
Query: 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA------------- 169
G + + G D F+ + + +D + Q
Sbjct: 131 GEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTLMSWKNPPSY 190
Query: 170 ------PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA--PSITKVYMENTSP 221
+ +N + + + ++ DG+R D + G
Sbjct: 191 RRFFDVNTLIGVNVEKDHVFQESHSKIL-DLDVDGYRIDHIDGLYDPEKYINDLRSIIKN 249
Query: 222 DFAVGEKW----DSLSYGPDGK---------PDANQDGHRGALKDWVQAAGGAVA---AF 265
+ EK + L DG + ++ +
Sbjct: 250 KIIIVEKILGFQEELKLNSDGTTGYDFLNYSNLLFNFNQEIMDSIYENFTAEKISISESI 309
Query: 266 DFTTKGILQAAVQGELWRL 284
I+ E+ RL
Sbjct: 310 KKIKAQIIDELFSYEVKRL 328
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Score = 82.4 bits (202), Expect = 7e-18
Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 13/185 (7%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD 92
+++ G + + L + GI +W+ P S GY + +YG+ D
Sbjct: 22 TNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIM-KEYGTMED 80
Query: 93 LKSLIQAFRQKGIKCLADMVINHRTAE----------RKDGRGIYCIFEGGTSDDRLDWG 142
SL+ +++ ++ + D+VINH + + + + Y + G + +
Sbjct: 81 FDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNY 140
Query: 143 PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 202
PSF + G + PD++ NP+V+++L + + + G G RFD
Sbjct: 141 PSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWL-DKGVSGMRFD 199
Query: 203 FVKGY 207
V Y
Sbjct: 200 TVATY 204
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Score = 79.7 bits (195), Expect = 3e-17
Identities = 58/321 (18%), Positives = 105/321 (32%), Gaps = 30/321 (9%)
Query: 29 GFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMPGRLY 80
N + GG + + + + + G T +W+ P ++ + A GY ++Y
Sbjct: 29 TCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIY 88
Query: 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLD 140
D++ S +G+ +LKSL A +G+ + D+V +H Y +F+ D
Sbjct: 89 DVN-SNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDP--FDSSSY 145
Query: 141 WGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200
+ P + D + + G+ PD+D V+ DW+ L + DG R
Sbjct: 146 FHPYCLIT-DWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLR 204
Query: 201 FDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGG 260
D V P Y + + G + D + D V
Sbjct: 205 IDSVLEVQPDFFPGYNKASGVYC----------VGEIDNGNPASDCPYQKVLDGVLNYPI 254
Query: 261 AVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF 320
+ + + S+ P FI+NHD +
Sbjct: 255 YWQLLYAFESSSGSISNLYNMIKSVASDCSD-------PTLLGNFIENHDNPRFAKYTS- 306
Query: 321 PSDKVMLGYAYILTHPGTPCI 341
+ +YI G P +
Sbjct: 307 DYSQAKNVLSYIFLSDGIPIV 327
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} Length = 432 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Score = 79.8 bits (195), Expect = 4e-17
Identities = 48/332 (14%), Positives = 87/332 (26%), Gaps = 44/332 (13%)
Query: 39 GGWYNSLKNSIPDLSNA-GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLI 97
GG + + + G ++L P ++ Y +D +G + L++LI
Sbjct: 65 GGDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVD-PAFGDNSTLQTLI 123
Query: 98 QAF----RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153
+ D V NH + +
Sbjct: 124 NDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYN---NFSSQGAYESQSSPWYNYYTFYT 180
Query: 154 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-----WLKTEIGFDGWRFDFVKG-- 206
G + P + + V+ + + N +L DGWR D +
Sbjct: 181 WPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVD 240
Query: 207 -------------YAPSITKVYMENTSPDFAVGEKWDS----LSYGPDGKPDANQDGHRG 249
S +GE W + + G N DG
Sbjct: 241 ANGNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQ 300
Query: 250 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 309
+ +W+ + +T G + + Q+ + F+ NH
Sbjct: 301 PVSEWITGKDYQNNSASISTTQFDSWL-----------RGTRANYPTNVQQSMMNFLSNH 349
Query: 310 DTGSTQRLWPFPSDKVMLGYAYILTHPGTPCI 341
D K L + +T+ GTP I
Sbjct: 350 DITRFATRSGGDLWKTYLALIFQMTYVGTPTI 381
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Length = 554 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Score = 80.0 bits (196), Expect = 5e-17
Identities = 44/289 (15%), Positives = 83/289 (28%), Gaps = 21/289 (7%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---GYMPGRLYDLDASKYGSQADLKS 95
G LK+ IP G+T++ L P + + GY D++ G+ DL+
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVN-PALGTIGDLRE 167
Query: 96 LIQAFRQKGIKCLADMVINHRTAE----------RKDGRGIYCIFEGGTSDDRL--DWGP 143
+I A + GI + D + NH + E Y IF D+
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLRE 227
Query: 144 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203
F + +S + F + + +G D R D
Sbjct: 228 IFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLANLGVDILRMD- 286
Query: 204 VKGYAPSITKVYMENTSPDFAVGEKWDSL--SYGPDGKPDANQDGHRGALKDWVQAAGGA 261
+ EN A+ ++++ P + H + ++
Sbjct: 287 AVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAPAVFFKSEAIVHPDQVVQYIGQDECQ 346
Query: 262 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 310
+ + E+ L + V ++ +HD
Sbjct: 347 IGYNPLQMALLWNTLATREVNLLHQALTYRHNLPE--HTAWVNYVRSHD 393
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Score = 77.0 bits (188), Expect = 3e-16
Identities = 66/313 (21%), Positives = 111/313 (35%), Gaps = 34/313 (10%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGYMPGRLYDLDASKYGSQ 90
GG + + + + + G T +W+ P + + A GY +Y L+ YG+
Sbjct: 39 GGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLN-ENYGTA 97
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
DLK+L A ++G+ + D+V NH + Y +F+ +S D + F +
Sbjct: 98 DDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQD---YFHPFCFIQN 154
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210
E + G++ PD+D V+ E DW+ L + DG R D VK
Sbjct: 155 YEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKD 214
Query: 211 ITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK 270
Y + + +GE D G Q+ G L + +
Sbjct: 215 FWPGYNKAAGV-YCIGEVLD----GDPAYTCPYQNVMDGVLNYPIYYPLLNAFKSTSGSM 269
Query: 271 GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK--VMLG 328
L + D TF++NHD R + +D
Sbjct: 270 DDLYNMINTVKSDCPD------------STLLGTFVENHD---NPRFASYTNDIALAKNV 314
Query: 329 YAYILTHPGTPCI 341
A+I+ + G P I
Sbjct: 315 AAFIILNDGIPII 327
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Score = 75.4 bits (184), Expect = 9e-16
Identities = 71/317 (22%), Positives = 117/317 (36%), Gaps = 29/317 (9%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADL 93
+ G + LKN++ L GI VWL P S++ GY Y ++YGS+ +
Sbjct: 14 GNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFK-AEYGSEREF 72
Query: 94 KSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 153
K +I+AF GIK + D+ I+H + + D W ++
Sbjct: 73 KEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQ--KALKGDPHYRDYYVWANKETDLDERRE 130
Query: 154 SDGQGNDDTGEDFQP--------APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205
DG+ ED + +PD+++ NP+V E+ + L +G DG+RFD K
Sbjct: 131 WDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLLD-MGVDGFRFDAAK 189
Query: 206 GYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAF 265
+I + W G A + + + G
Sbjct: 190 HMRDTIEQNVR-----------FWKYFLSDLKGIFLAEIWAEARMVDEHGRIFG---YML 235
Query: 266 DFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP-FPSDK 324
+F T ++ AV E R+ + + V F NHD F +K
Sbjct: 236 NFDTSHCIKEAVWKENTRVLIESIERAVIAK--DYLPVNFTSNHDMSRLASFEGGFSKEK 293
Query: 325 VMLGYAYILTHPGTPCI 341
+ L + + T PG P +
Sbjct: 294 IKLSISILFTLPGVPLV 310
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Score = 75.5 bits (184), Expect = 1e-15
Identities = 57/346 (16%), Positives = 112/346 (32%), Gaps = 41/346 (11%)
Query: 34 SSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD 92
S+ G + + + L GI +WL P +S GY + +++G+ D
Sbjct: 22 SNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIM-NEFGTMED 80
Query: 93 LKSLIQAFRQKGIKCLADMVINHRTAERK-----------DGRGIYCIFEGGTSDDRLDW 141
L+ ++ +K + D+V+NH + E R Y G + +W
Sbjct: 81 WDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNW 140
Query: 142 GPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201
G +F +Y + + PD++ N +V++++ + M + E G DG+R
Sbjct: 141 GAAF-SGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFW-LEKGIDGFRM 198
Query: 202 DFV---------------KGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDG 246
D + + S K +M + + E + + D G
Sbjct: 199 DVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSHYDIMTVGEMPG 258
Query: 247 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV--- 303
F + + + +G W +K + Q A+
Sbjct: 259 VTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHT 318
Query: 304 ----TFIDNHDTGSTQ----RLWPFPSDKVMLGYAYILTHPGTPCI 341
+ +NHD + + + + GTP I
Sbjct: 319 GWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYI 364
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Score = 74.0 bits (180), Expect = 3e-15
Identities = 56/318 (17%), Positives = 95/318 (29%), Gaps = 21/318 (6%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---------APQGYMPGRLYDLDASKYGS 89
GG ++ +P L G+T +WL P ++ GY R + +G+
Sbjct: 48 GGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWT-RDFKQIEEHFGN 106
Query: 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG 149
+L+ Q GIK + D V NH T EGG + + ++
Sbjct: 107 WTTFDTLVNDAHQNGIKVIVDFVPNHST---PFKANDSTFAEGGALYNNGTYMGNYFDDA 163
Query: 150 DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209
K Y G D + D + + L+D T + + +
Sbjct: 164 TKGYFHHNG-DISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGA 222
Query: 210 SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 269
++ D L D G + ++ A +
Sbjct: 223 DGLRIDAVKHFNSGFSKSLADKLYQKKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVL 282
Query: 270 KGILQAAVQGELWRLKDSNGKPPGFIGIL------PQNAVTFIDNHDTGSTQRLWPFPSD 323
L ++ + + +N +TFIDNHD +
Sbjct: 283 DFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKENLITFIDNHDMSRFLSVNSNK-A 341
Query: 324 KVMLGYAYILTHPGTPCI 341
+ A+ILT GTP I
Sbjct: 342 NLHQALAFILTSRGTPSI 359
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} Length = 422 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Score = 72.1 bits (175), Expect = 1e-14
Identities = 61/317 (19%), Positives = 102/317 (32%), Gaps = 25/317 (7%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ----GYMPGRLYDLDASKYGSQADLK 94
GG + + ++ G T +W P ++ A GY Y +D +YGS D
Sbjct: 49 GGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRID-PRYGSNEDFV 107
Query: 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
L R++G+ + D+V++H + + + + D +
Sbjct: 108 RLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAA 167
Query: 155 DGQGNDDT-GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG----YAP 209
+ T G + PD++ NP V L W G G R D +
Sbjct: 168 QADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLT 227
Query: 210 SITKVYMENTSPDFAVGEKW--DSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF 267
T+ M VGE+W + AN DG+ L DF
Sbjct: 228 EYTRRLMAEYPRLNMVGEEWSTRVPVVARWQRGKANFDGYTSHLPSL----------MDF 277
Query: 268 TTKGILQAAVQGELWRLKDS---NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDK 324
++ A+ + ++ PQN V F NHD D+
Sbjct: 278 PLVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDR 337
Query: 325 VMLGYAYILTHPGTPCI 341
+ +++T P P
Sbjct: 338 WRMNLVFLMTMPRIPQF 354
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Score = 68.2 bits (165), Expect = 2e-13
Identities = 66/323 (20%), Positives = 107/323 (33%), Gaps = 35/323 (10%)
Query: 39 GGWYNSLKNSIPD--LSNAGITHVWLPPPSQ-------------SVAPQGYMPGRLYDLD 83
GG + + N I D L+ G+T +W+P P + S + GY +
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTN 110
Query: 84 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 143
+GS D ++LI IK + D NH T+ + Y + L G
Sbjct: 111 -PYFGSFTDFQNLINTAHAHNIKVIIDFAPNH-TSPASETDPTYAENGRLYDNGTLLGGY 168
Query: 144 SFICRGDKEYSDGQGN----DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199
+ G + G D + D++ N + L + ++G DG
Sbjct: 169 TNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKV-WLDMGIDGI 227
Query: 200 RFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG 259
R D VK K +M++ G+ + + +G
Sbjct: 228 RLDAVKHMPFGWQKNFMDS---------ILSYRPVFTFGEWFLGTNEIDVNNTYFANESG 278
Query: 260 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP 319
++ F F+ K + DS + + VTFIDNHD R +
Sbjct: 279 MSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFINDMVTFIDNHDM---DRFYN 335
Query: 320 -FPSDKVMLGYAYILTHPGTPCI 341
+ V A+ LT G P I
Sbjct: 336 GGSTRPVEQALAFTLTSRGVPAI 358
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Score = 67.8 bits (164), Expect = 3e-13
Identities = 57/329 (17%), Positives = 94/329 (28%), Gaps = 52/329 (15%)
Query: 37 KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDASKYGSQADLK 94
G + + + L + GIT + + P +Q + GY LY + + YG +
Sbjct: 23 TPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQ-NSYGGPEGFR 81
Query: 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
L+ +KG+ + D+V NH E + + GP F + +
Sbjct: 82 KLVDEAHKKGLGVILDVVYNHVGPE---------------GNYMVKLGPYFSQKYKTPWG 126
Query: 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKV 214
D D + V+K + + + + E DG+R D V + K
Sbjct: 127 LTFNFD------------DAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPKH 174
Query: 215 YMENTSPDF-----------------AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 257
+E + V K D L Q
Sbjct: 175 ILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGERQG 234
Query: 258 AGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT----GS 313
D K V + + N V +I NHD G
Sbjct: 235 YYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGK 294
Query: 314 TQRLWPFPSDKV-MLGYAYILTHPGTPCI 341
+R+ + + A L P P I
Sbjct: 295 GERIIKLVDRESYKIAAALYLLSPYIPMI 323
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Score = 65.8 bits (159), Expect = 2e-12
Identities = 57/347 (16%), Positives = 100/347 (28%), Gaps = 58/347 (16%)
Query: 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------------APQGYMPGRLYDLD-- 83
G Y L++ G+T V P ++ GYM + D
Sbjct: 40 GTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRR 99
Query: 84 ----ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 139
+ G A+ ++++QAF GIK D+V NH +
Sbjct: 100 YAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLD 159
Query: 140 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 199
+ + G++ + D G + + N Q + D + + +G DG+
Sbjct: 160 NATYYELTSGNQYFYDNTGIG---------ANFNTYNTVAQNLIVDSLAYWANTMGVDGF 210
Query: 200 RFDFVKG----------------------------YAPSITKVYMENTSPDFAVGEKWDS 231
RFD +I ++ E T A G D
Sbjct: 211 RFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDL 270
Query: 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKP 291
+ ++ Q G G + V + S+
Sbjct: 271 FAEPWAIGGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLF 330
Query: 292 PGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGT 338
G P N++ FID HD + + ++ + Y + GT
Sbjct: 331 QSS-GRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGT 376
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Score = 65.0 bits (157), Expect = 2e-12
Identities = 47/338 (13%), Positives = 85/338 (25%), Gaps = 48/338 (14%)
Query: 29 GFNWESSNKAGGWYNSL-KNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDAS 85
+ + N Y L +P G TH+ L P ++ GY P LY
Sbjct: 26 SWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPT-R 84
Query: 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145
++G++ D + I A G+ + D V H + SD R + +
Sbjct: 85 RFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDW 144
Query: 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205
++ V L + G D R D V
Sbjct: 145 NT----------------------LIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVA 182
Query: 206 GYAPS----ITKVYMENTSPDFAVGEKWDSLS---------YGPDGKPDANQDGHRGALK 252
++ N E + L G +
Sbjct: 183 SMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSR 242
Query: 253 DWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGFIGILPQNAVT----FID 307
G ++ ++ + ++R + G + +N V
Sbjct: 243 PQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEV 302
Query: 308 NHDTGSTQRLWPFPSD----KVMLGYAYILTHPGTPCI 341
H S P + + Y ++ PG +
Sbjct: 303 VHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL 340
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Score = 60.9 bits (146), Expect = 7e-11
Identities = 54/331 (16%), Positives = 92/331 (27%), Gaps = 56/331 (16%)
Query: 37 KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ--GYMPGRLYDLDASKYGSQADLK 94
G Y + +P L G+T + + P + + GY Y A YG DL
Sbjct: 28 TPEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAP-YGRPEDLM 86
Query: 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154
+L+ A + G+ D+V NH +GPS S
Sbjct: 87 ALVDAAHRLGLGVFLDVVYNH-------------------------FGPSGNYLSSYAPS 121
Query: 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV--------KG 206
+D+ P +++ ++ + FDG R D
Sbjct: 122 YFTDRF----SSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMTDDSETH 177
Query: 207 YAPSITKVYMENTSPDFAVGEKWDSLS--YGPDGKPDANQDGHRGALKD-WVQAAGGAVA 263
+ + E + E +L + D + G A
Sbjct: 178 ILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDDFHHETRVTLTGEQEGYYA 237
Query: 264 AFDFTTKGILQAAVQGELWRLKDSNGKPPGFI------GILPQNAVTFIDNHDTGSTQRL 317
+ + + +G + + K + N V I NHD + L
Sbjct: 238 GYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPL 297
Query: 318 WPFPSD-------KVMLGYAYILTHPGTPCI 341
+ A +LT P TP +
Sbjct: 298 GERLHQSDGVTLHEYRGAAALLLTLPMTPLL 328
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 61.2 bits (147), Expect = 7e-11
Identities = 24/190 (12%), Positives = 59/190 (31%), Gaps = 22/190 (11%)
Query: 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-------APQGYMPGRLYDLD-------A 84
G + + +P + + G ++L P S+ AP Y +LD
Sbjct: 116 AGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLL 175
Query: 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPS 144
+ + K+ ++A GI+ + D + + R F ++ D+ P
Sbjct: 176 EPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPP 235
Query: 145 FICRGDKEYSDGQGNDDTGED-------FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197
+ D + + + ++P+ +++ + E+
Sbjct: 236 RAEELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNI-LELIVK 294
Query: 198 GWRFDFVKGY 207
+ G+
Sbjct: 295 EFGIITPPGF 304
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 36.9 bits (84), Expect = 0.004
Identities = 28/311 (9%), Positives = 63/311 (20%), Gaps = 30/311 (9%)
Query: 31 NWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQ 90
+W K + +L L + ++ +
Sbjct: 219 DWFYWIKVEELADYTPPRAEELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKW 278
Query: 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150
+K + +K + ++ T P R
Sbjct: 279 EKIKREEGNILELIVKEFGIITPPGF---SDLINDPQPTWDDVTFLRLYLDHPEASKRFL 335
Query: 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210
D + N + + L+ + + + G DG R D
Sbjct: 336 DPNQPPYVLYDVIKAS--KFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKE 393
Query: 211 ITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK 270
+ + ++N + P D + A +D
Sbjct: 394 LLDLIIKNVK----------------EYDPAFVMIAEE---LDMEKDKASKEAGYDVILG 434
Query: 271 GILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYA 330
A + E + + ++ DT K + +
Sbjct: 435 SSWYFAGRVEEIGKLPDIAEELVL------PFLASVETPDTPRIATRKYASKMKKLAPFV 488
Query: 331 YILTHPGTPCI 341
P +
Sbjct: 489 TYFLPNSIPYV 499
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 28/224 (12%), Positives = 57/224 (25%), Gaps = 14/224 (6%)
Query: 38 AGGWYNSLKNSIPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLDASKYGSQADLKS 95
G S+ + + + V + P A G+ P +D + GS D+
Sbjct: 15 GDGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVD-ERLGSWDDVAE 73
Query: 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 155
L K + D ++NH + E K + + E +
Sbjct: 74 LS-----KTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMS------SVFPNG 122
Query: 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY 215
D G K W+++ ++ D + ++
Sbjct: 123 ATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMA 182
Query: 216 MENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG 259
+ S + + G L++ G
Sbjct: 183 ASHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGVKRG 226
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Length = 563 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Score = 39.4 bits (90), Expect = 5e-04
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 6/165 (3%)
Query: 49 IPDLSNAGITHVWLPP--PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK 106
+ LS +G+TH+ L P +V + + + +KS A
Sbjct: 61 LKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGS 120
Query: 107 CLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWG--PSFICRGDKEYSDGQGNDDTGE 164
+ +++ + + KD + + D +WG P + Y+ +
Sbjct: 121 TVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK 180
Query: 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209
+F+ I + + + + + T R + P
Sbjct: 181 EFRTM--IQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVP 223
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 358 | |||
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 100.0 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 100.0 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 100.0 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 100.0 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1ua7a2 | 344 | Bacterial alpha-amylase {Bacillus subtilis [TaxId: | 100.0 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 100.0 | |
| d1ji1a3 | 432 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 100.0 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 100.0 | |
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 100.0 | |
| d1r7aa2 | 434 | Sucrose phosphorylase {Bifidobacterium adolescenti | 100.0 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 100.0 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 100.0 | |
| d1x1na1 | 523 | Amylomaltase MalQ {Potato (Solanum tuberosum) [Tax | 98.62 | |
| d1tz7a1 | 485 | Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363] | 98.45 | |
| d1eswa_ | 500 | Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | 98.4 | |
| d1zy9a2 | 348 | Alpha-galactosidase GalA catalytic domain {Thermot | 98.11 | |
| d2f2ha4 | 338 | Putative glucosidase YicI, domain 2 {Escherichia c | 97.76 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 97.05 | |
| d1qnra_ | 344 | Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | 96.86 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 96.84 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 96.6 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 96.6 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 96.42 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 96.38 | |
| d1foba_ | 334 | Beta-1,4-galactanase {Fungus (Aspergillus aculeatu | 96.27 | |
| d1ceoa_ | 340 | Endoglucanase CelC {Clostridium thermocellum [TaxI | 96.08 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 96.02 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 95.85 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 95.57 | |
| d1edga_ | 380 | Endoglucanase CelA {Clostridium cellulolyticum [Ta | 95.47 | |
| d1wkya2 | 297 | Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 | 95.34 | |
| d1qbaa3 | 443 | Bacterial chitobiase (beta-N-acetylhexosaminidase) | 95.19 | |
| d1nowa1 | 353 | beta-hexosaminidase B {Human (Homo sapiens) [TaxId | 95.16 | |
| d1bqca_ | 302 | Beta-mannanase {Thermomonospora fusca [TaxId: 2021 | 95.1 | |
| d1vjza_ | 325 | Endoglucanase homologue TM1752 {Thermotoga maritim | 95.06 | |
| d1edta_ | 265 | Endo-beta-N-acetylglucosaminidase {Streptomyces pl | 95.0 | |
| d1r46a2 | 292 | Melibiase {Human (Homo sapiens) [TaxId: 9606]} | 94.86 | |
| d2ebna_ | 285 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 94.36 | |
| d1yhta1 | 344 | Dispersin B, DspB {Actinobacillus actinomycetemcom | 94.23 | |
| d7a3ha_ | 300 | Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId | 93.97 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 93.91 | |
| d1h1na_ | 305 | Endocellulase EngI {Thermoascus aurantiacus [TaxId | 93.82 | |
| d1jaka1 | 356 | beta-N-acetylhexosaminidase {Streptomyces plicatus | 93.52 | |
| d2gjxa1 | 362 | beta-hexosaminidase A {Human (Homo sapiens) [TaxId | 93.51 | |
| d1tvna1 | 293 | Endoglucanase Cel5a {Pseudoalteromonas haloplankti | 93.33 | |
| d1eoka_ | 282 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 93.05 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 92.98 | |
| d1egza_ | 291 | Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: | 92.56 | |
| d1hl9a2 | 350 | Putative alpha-L-fucosidase, catalytic domain {The | 92.19 | |
| d1uasa2 | 273 | Melibiase {Rice (Oryza sativa) [TaxId: 4530]} | 91.63 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 90.32 | |
| d2aama1 | 285 | Hypothetical protein TM1410 {Thermotoga maritima [ | 89.67 | |
| d1tg7a5 | 354 | Beta-galactosidase LacA, N-terminal domain {Penici | 88.48 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 87.73 | |
| d1jz8a5 | 292 | beta-Galactosidase, domain 3 {Escherichia coli [Ta | 85.0 | |
| d1bhga3 | 304 | beta-Glucuronidase, domain 3 {Human (Homo sapiens) | 84.23 | |
| d2hvma_ | 273 | Hevamine A (chitinase/lysozyme) {Para rubber tree | 83.32 | |
| d1vema2 | 417 | Bacterial beta-amylase {Bacillus cereus [TaxId: 13 | 81.3 |
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=100.00 E-value=3.9e-67 Score=488.27 Aligned_cols=327 Identities=63% Similarity=1.187 Sum_probs=266.3
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCC-CCCCHHHHHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDAS-KYGSQADLKSLIQAFR 101 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~-~~Gt~~d~~~Lv~~~H 101 (358)
.+|++|+|.|+++.+++|||++|++||||||+||||+|||+||++++++|||++.||++|+ | +|||++||++||++||
T Consensus 1 ~~~~~~~f~~~~~~~~~g~~~~i~~kLdyl~~lGv~~i~L~Pi~~~~~~~gY~~~d~~~id-~~~~G~~~~f~~lv~~~H 79 (347)
T d1ht6a2 1 HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID-ASKYGNAAELKSLIGALH 79 (347)
T ss_dssp CCCEEECCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGG-GCTTCCHHHHHHHHHHHH
T ss_pred CeeEEeccccCcCCCCCCCHHHHHHhHHHHHHcCCCEEEECCCCcCCCCCCCCccCcCcCC-cccCCCHHHHHHHHHHHh
Confidence 3799999999999999999999999999999999999999999999999999999999999 8 7999999999999999
Q ss_pred HcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 018278 102 QKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181 (358)
Q Consensus 102 ~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~ 181 (358)
++||+||+|+|+||++..|++....+..+.+........|.....+.....+.+....+..+.++..+||||+.|++||+
T Consensus 80 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~ 159 (347)
T d1ht6a2 80 GKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQR 159 (347)
T ss_dssp HTTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHH
T ss_pred hcceEEeeeccccccCCCCcccccccccccCCCCCCCcCcCccccCCCcccccccccccccccccCCCCcccccchhhhh
Confidence 99999999999999999988655555555555555555555544444555555666777788899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHH---hc
Q 018278 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ---AA 258 (358)
Q Consensus 182 ~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 258 (358)
++++++++|++++||||||+|++++++.++|+.+.++.+..+..+|..............+......+....+.. ..
T Consensus 160 ~l~~~~~~wi~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (347)
T d1ht6a2 160 ELKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGA 239 (347)
T ss_dssp HHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHCCSCEEECCCCCCCBCTTSSBCSCCHHHHHHHHHHHHHHTGG
T ss_pred hhhhhhhhhcccCCcceEEEechhhcChHHHHHHHHhcccccchhhhcchhhccccccchhhhhcchhhhhhhhhhhCCc
Confidence 999999999988999999999999999999999998888888888887664433333333332222233333322 22
Q ss_pred CCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCe
Q 018278 259 GGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGT 338 (358)
Q Consensus 259 ~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~ 338 (358)
......+++.....+..++.++...+..............+..+++|++|||++|+.+......+++++|+|++||+|||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~nHD~~R~~s~~~~~~~~~~~a~a~llt~pGi 319 (347)
T d1ht6a2 240 ASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGI 319 (347)
T ss_dssp GSSEEEECHHHHHHHHHHTTTCGGGGSCTTSSCSSHHHHCGGGEEEESCCTTTSTTTCSSCCCGGGHHHHHHHHHHSSSE
T ss_pred cccchhhhcchhhHHHHhhccchHHHHHHhhhccccccCChhHeEEecCCCCccCcccccCCCHHHHHHHHHHHHHcCCc
Confidence 34566789988888888777776655554443333344467788999999999999999988888999999999999999
Q ss_pred eeeecCccccCC
Q 018278 339 PCIVISVTYPLF 350 (358)
Q Consensus 339 P~IyyGdE~G~~ 350 (358)
|+||||||++.+
T Consensus 320 P~IyyGD~~~~~ 331 (347)
T d1ht6a2 320 PCIFYDHFFNWG 331 (347)
T ss_dssp EEEEHHHHHTSS
T ss_pred eEEEeCCCcCCC
Confidence 999999999654
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=100.00 E-value=4.1e-62 Score=463.52 Aligned_cols=311 Identities=28% Similarity=0.490 Sum_probs=232.6
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccC---------CCCCCCCCCHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLY---------DLDASKYGSQA 91 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~---------~id~~~~Gt~~ 91 (358)
+.||+|+|+|+++.+ ||+|++|++||||||+||||+|||+||+++. .++||++.|+| +|+ |+|||++
T Consensus 2 ~~~~~q~f~w~~~~~-g~~~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd-~~~Gt~~ 79 (394)
T d2d3na2 2 NGTMMQYFEWYLPND-GNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVR-TKYGTRS 79 (394)
T ss_dssp CCCEEECCCTTCCSS-SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSS-BTTBCHH
T ss_pred CccEEEEEecccCCC-CCcHHHHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcC-CCCCCHH
Confidence 689999999999987 5899999999999999999999999999864 47888888886 599 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCCC----------------Cc-----ceeeccC-C--CCCCC--CCC----
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDG----------------RG-----IYCIFEG-G--TSDDR--LDW---- 141 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~----------------~~-----~~~~~~~-~--~~~~~--~~~---- 141 (358)
||++||++||++|||||+|+|+||+|..++.. .. .|..+.. + ...+. ..|
T Consensus 80 df~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (394)
T d2d3na2 80 QLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFD 159 (394)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEE
T ss_pred HHHHHHHHHHHCCCEEEEEEecccccCccccccccccccCcccccccccccccccccccccCccccCCCCccccccccCC
Confidence 99999999999999999999999999765310 00 1111111 0 00000 011
Q ss_pred ----CCCccc--------CCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH
Q 018278 142 ----GPSFIC--------RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (358)
Q Consensus 142 ----~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~ 209 (358)
.....+ .....|............+..+||||++||+||+++++++++|++++||||||+|+|+|++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~~ 239 (394)
T d2d3na2 160 GVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKY 239 (394)
T ss_dssp EESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCH
T ss_pred CcccccccCCCCCcceecCCCCccccccccccccccccCCcccccCCHHHHHHHHHhhhhhhcccCcceEEecccccCCh
Confidence 100000 00111222223334455678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhh
Q 018278 210 SITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWR 283 (358)
Q Consensus 210 ~~~~~~~~~----~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~ 283 (358)
+||++++++ ..| ++++||.|.. ....+..|....+...++|||++...+..++.+ ....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~gE~~~~---------------~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~ 304 (394)
T d2d3na2 240 SFTRDWINHVRSATGKNMFAVAEFWKN---------------DLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYD 304 (394)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHHhcCCceeeccccccc---------------ccccccchhccccccceeehHHHHHHHHHHHhcCcchh
Confidence 999998543 334 8899999964 256677787777778889999999888888743 3344
Q ss_pred hhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCc-chHHHHHHHHHcC-CCeeeeecCccccCCCC
Q 018278 284 LKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS-DKVMLGYAYILTH-PGTPCIVISVTYPLFHP 352 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~-~~~~~a~a~l~~~-pG~P~IyyGdE~G~~~~ 352 (358)
+.+.... ......|.++++|++|||++|..+...... .+.++|+|++|++ ||||+||||||+|+.+.
T Consensus 305 l~~~~~~--~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~la~a~~l~~~pGiP~iyyGdE~G~~~~ 373 (394)
T d2d3na2 305 MRNIFNG--TVVQRHPSHAVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTH 373 (394)
T ss_dssp GGGTTTT--CHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGG
T ss_pred HHHHHhc--cccccCHhHeeEeCcCCcCccccccccCccHHHHHHHHHHHHHcCCCeEEEEhhHhcCCCCC
Confidence 4443221 222335678899999999999887655333 3456788887775 99999999999998654
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=100.00 E-value=1.4e-61 Score=459.97 Aligned_cols=314 Identities=27% Similarity=0.467 Sum_probs=234.7
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCC---------CCCCCCCCHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYD---------LDASKYGSQA 91 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~---------id~~~~Gt~~ 91 (358)
+.|++|+|+|+++.+ ||+|+||++||||||+||||+||||||+++. .++||++.++|+ || |+|||++
T Consensus 2 ~~~~~~~f~w~~~~~-gg~~~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd-~~~Gt~~ 79 (393)
T d1e43a2 2 NGTLMQYFEWYTPND-GQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVR-TKYGTKS 79 (393)
T ss_dssp CCCEEECCCTTCCSS-SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCCHH
T ss_pred CccEEEeEecCCCCC-CCCHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccC-CCCCCHH
Confidence 579999999999988 6899999999999999999999999999864 478888888764 79 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCCCC---------------------cceeeccC-C--CCCCCCCCC-----
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDGR---------------------GIYCIFEG-G--TSDDRLDWG----- 142 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~---------------------~~~~~~~~-~--~~~~~~~~~----- 142 (358)
||++||++||++||+||+|+|+||+|.+|+... ..|..+.. + .+.....|.
T Consensus 80 df~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (393)
T d1e43a2 80 ELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFD 159 (393)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEE
T ss_pred HHHHHHHHHHHcCCEEEEEEeeccccCCCccccccccccCccccccccccccccccccccccCCCCCCCcccccccccCC
Confidence 999999999999999999999999998774210 01111111 0 111100110
Q ss_pred -----CCcc-------cCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHH
Q 018278 143 -----PSFI-------CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210 (358)
Q Consensus 143 -----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~ 210 (358)
.... ......|...........++..+||||++||+|++++++++++|++++||||||+|++++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~ 239 (393)
T d1e43a2 160 GADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFS 239 (393)
T ss_dssp EESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHH
T ss_pred CCCccccCCcCCcccccCcccccccccccccceeccccccccccCChhhhHHHHHHHHhhhhhcCcceEEeeccccCCHH
Confidence 0000 0000111111122334456678999999999999999999999999899999999999999999
Q ss_pred HHHHHHHh----cCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc-Cchhhh
Q 018278 211 ITKVYMEN----TSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRL 284 (358)
Q Consensus 211 ~~~~~~~~----~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~-~~~~~~ 284 (358)
||++++++ ..+ ++++||.|.. ....+..|....+....+|||++...+..++. +....+
T Consensus 240 f~~~~~~~~~~~~~~~~~~~gE~~~~---------------~~~~~~~~~~~~~~~~~~~d~~l~~~~~~a~~~~~~~~l 304 (393)
T d1e43a2 240 FLRDWVQAVRQATGKEMFTVAEYWQN---------------NAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDM 304 (393)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCG
T ss_pred HHHHHHHHHHHhcCcceEEeeeecCC---------------cHHhhhhhhhccccceeeechHHHHHHHHHHhccchHHH
Confidence 99998644 334 8899999964 25667788877777788899999888887764 333444
Q ss_pred hhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCC-CcchHHHHHHHHHc-CCCeeeeecCccccCCCCCCC
Q 018278 285 KDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF-PSDKVMLGYAYILT-HPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~-~~~~~~~a~a~l~~-~pG~P~IyyGdE~G~~~~~n~ 355 (358)
.+.... ......+.++++|++|||++|+.+.... ...+.++|++++++ +||+|+||||||+|+.+..+.
T Consensus 305 ~~~~~~--~~~~~~~~~~v~fl~nHD~~R~~~~~~~~~~~~~~la~a~ll~~~pG~P~IyyGdE~G~~g~~~~ 375 (393)
T d1e43a2 305 RKLLNG--TVVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQR 375 (393)
T ss_dssp GGTTTT--CSTTTCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCCCCSSTT
T ss_pred HHHHhh--cccccCccceeEeccCCCCcccccccCchhHHHHHHHHHHHHHcCCCcEEEEhhHhcCCCCCCCC
Confidence 444332 2233457789999999999999887653 33355678887776 599999999999999876543
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=8e-61 Score=454.55 Aligned_cols=313 Identities=27% Similarity=0.454 Sum_probs=232.2
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccC---------CCCCCCCCC
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLY---------DLDASKYGS 89 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~---------~id~~~~Gt 89 (358)
+-+.||+|+|.|+++.+ +|+|++|++||+|||+||||+|||+||++++ .++||++.||| +|+ |+|||
T Consensus 3 ~~~~~~~~~f~w~~~~~-~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd-~~~Gt 80 (393)
T d1hvxa2 3 PFNGTMMQYFEWYLPDD-GTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVR-TKYGT 80 (393)
T ss_dssp CCCCCEEECCCTTCCSS-SCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCC
T ss_pred CCCceEEEeEeeccCCC-CChHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcC-CCCCC
Confidence 45789999999999876 6899999999999999999999999999765 47999999997 599 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccC--CC--------------CCc-----ceeeccC---CCCCCCCCCCCCc
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAER--KD--------------GRG-----IYCIFEG---GTSDDRLDWGPSF 145 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~--~~--------------~~~-----~~~~~~~---~~~~~~~~~~~~~ 145 (358)
++||++||++||++||+||+|+|+||++... ++ ... .|..+.. +.......|....
T Consensus 81 ~~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1hvxa2 81 KAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYH 160 (393)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccccCCccceeecccCccccccccCCCcccccccccCCCCCCCCCCCccccccc
Confidence 9999999999999999999999999997532 10 000 0111111 0001111110000
Q ss_pred -----------------ccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC
Q 018278 146 -----------------ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 146 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 208 (358)
.......|...........++..++|||++||+|++++++++++|++++||||||+|+|++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~ 240 (393)
T d1hvxa2 161 FDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK 240 (393)
T ss_dssp EEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC
T ss_pred CCCCcccccCCcCccccccCCcCccccccccccceeeccccceeccCChHHHHHHHHHHHHHHHhhCCceeeeeccccCC
Confidence 000111122222233445567889999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHh----c-CCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chh
Q 018278 209 PSITKVYMEN----T-SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELW 282 (358)
Q Consensus 209 ~~~~~~~~~~----~-~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~ 282 (358)
.+||+++++. . ++++++||.|.. ....+..|....++..++|||++...+..++.. ...
T Consensus 241 ~~f~~~~~~~~~~~~~~~~~~~gE~~~~---------------~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~ 305 (393)
T d1hvxa2 241 FSFFPDWLSYVRSQTGKPLFTVGEYWSY---------------DINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTF 305 (393)
T ss_dssp TTHHHHHHHHHHHHHCCCCEEEECCCCS---------------CHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCS
T ss_pred hhHHHHHHHHHHHhcCCcceeeeeccCc---------------cHHHHHHHhhccccccchhhHHHHHHHHHHHccCCHH
Confidence 9999887542 2 458899999964 256777888877788889999999888777643 333
Q ss_pred hhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCC-CcchHHHHHHHHHc-CCCeeeeecCccccCCCC
Q 018278 283 RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF-PSDKVMLGYAYILT-HPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~-~~~~~~~a~a~l~~-~pG~P~IyyGdE~G~~~~ 352 (358)
.+..... .......+.++++|++|||++|..+.... ...+.++|+|++|+ +||||+||||||+|+.+.
T Consensus 306 ~~~~~~~--~~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~a~a~~l~~~pGiP~iyyGdE~G~~~~ 375 (393)
T d1hvxa2 306 DMRTLMT--NTLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQY 375 (393)
T ss_dssp CGGGTTT--TCHHHHCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGG
T ss_pred HHHHHHH--hhhccCCcccEeEECcCCCCccccccccCCCHHHHHHHHHHHHHhCCCeEEEEhhHhcCCCCc
Confidence 3333322 12233456788999999999998876542 34456778887665 599999999999998653
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=1.7e-60 Score=446.06 Aligned_cols=308 Identities=28% Similarity=0.470 Sum_probs=223.3
Q ss_pred CCCceEEEeeecCCCCCC-CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC----------CCCCCCccccCCCCCCCCCC
Q 018278 21 TSPALLFQGFNWESSNKA-GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----------APQGYMPGRLYDLDASKYGS 89 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~-~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~----------~~~gY~~~d~~~id~~~~Gt 89 (358)
-.++||+|+|+|++.+++ +|+|++|+++|+|||+||||+|||||+++++ ++|||++.|| +|+ |+|||
T Consensus 14 ~g~~~~~~~f~w~~~~~~~~~~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy-~vd-~~~Gt 91 (357)
T d1gcya2 14 GGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-NKN-GRYGS 91 (357)
T ss_dssp GGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSS-CSC-SSSCC
T ss_pred CCCEEEEeeeecCCCCCCCCcHHHHHHHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhc-ccC-ccCCC
Confidence 356899999999998776 5679999999999999999999999999874 4789999996 799 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (358)
++||++||++||++||+||+|+|+||++..|++....+... ...|..... .... ..........+...+
T Consensus 92 ~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~ 160 (357)
T d1gcya2 92 DAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAG-------QGFWRNDCA--DPGN--YPNDCDDGDRFIGGD 160 (357)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSS-------SSCBGGGSC--CCSS--SCBTTBSSCCSTTST
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeccccCCCCCccccccccC-------CCccccccC--CCCC--CCCCCCccccccccc
Confidence 99999999999999999999999999999886332211100 001111000 0000 111123334567789
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCC-CeEEEeccCCCCCCCCCCCCCCCCCch
Q 018278 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHR 248 (358)
Q Consensus 170 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~ 248 (358)
||||++||+|++++++++++|++++||||||+|+|++++.++|+++++..++ .+++||.|........ ........+.
T Consensus 161 ~dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~-~~~~~~~~~~ 239 (357)
T d1gcya2 161 ADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPN-WDWRNTASWQ 239 (357)
T ss_dssp TBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGSCT-TSGGGGSCHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhcCCHHHHHHHHhhcCCCceeeeeeccCccchhh-hhhhccchhh
Confidence 9999999999999999999888889999999999999999999999888777 8899999975321100 0001111223
Q ss_pred hhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCC------CCc
Q 018278 249 GALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP------FPS 322 (358)
Q Consensus 249 ~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~------~~~ 322 (358)
..+..+.... ....++|.+...+......+....... . .....+..+++|++|||+.|+.+..+ ...
T Consensus 240 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~ 312 (357)
T d1gcya2 240 QIIKDWSDRA--KCPVFDFALKERMQNGSIADWKHGLNG---N--PDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQD 312 (357)
T ss_dssp HHHHHHHHHH--TSCEECHHHHHHHHHSCGGGGGGSGGG---C--SSHHHHTTEEECSCCTTTSBCSSGGGBCCSSCCCG
T ss_pred hhhHhHhhhc--cccccchhhhhhhhhhhHHHHHHHHhh---C--ccccccceeEEeecCCCcccccccCCccccccCHH
Confidence 3344444433 344577777766655432222222211 1 11223467899999999999877544 245
Q ss_pred chHHHHHHHHHcCCCeeeeecCccccC
Q 018278 323 DKVMLGYAYILTHPGTPCIVISVTYPL 349 (358)
Q Consensus 323 ~~~~~a~a~l~~~pG~P~IyyGdE~G~ 349 (358)
++.++|++++||+||+|+||||||++.
T Consensus 313 ~~~~la~alllt~pGiP~IyyGde~d~ 339 (357)
T d1gcya2 313 GLIRQAYAYILTSPGTPVVYWDHMYDW 339 (357)
T ss_dssp GGHHHHHHHHHHSSSEEEEEHHHHHTS
T ss_pred HHHHHHHHHHHhCCCccEEEcCCcccC
Confidence 678999999999999999999998754
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.7e-61 Score=457.14 Aligned_cols=309 Identities=21% Similarity=0.329 Sum_probs=232.6
Q ss_pred hcCCCCCCceEEEeeecCCCCC-----------------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCC
Q 018278 16 IFLPFTSPALLFQGFNWESSNK-----------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ 72 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~~~~~~-----------------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~ 72 (358)
-.|.|++++||||++. ++..+ .+|||+||++||||||+||||+||||||++++++|
T Consensus 4 ~~P~w~~~~viY~v~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~~~ 82 (382)
T d1j0ha3 4 EAPDWVKDTVWYQIFP-ERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNH 82 (382)
T ss_dssp CCCGGGGGCCEEEECG-GGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSS
T ss_pred CCCcchhCCEEEEEEc-chhcCCCCCCCccccccccccCCccCccCCcCHHHHHHhHHHHHHcCCCEEEeCCCCcCCccc
Confidence 4799999999999985 33211 25999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCc
Q 018278 73 GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE 152 (358)
Q Consensus 73 gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (358)
||++.||++|| |+|||+++|++||++||++||+||+|+|+||++.+|++....+ ..+......+|.... ....
T Consensus 83 gy~~~d~~~vd-~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~ 155 (382)
T d1j0ha3 83 KYDTADYFEVD-PHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVW---KNGESSKYKDWFHIH---EFPL 155 (382)
T ss_dssp CCSCSEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHH---HHGGGCTTGGGBCBS---SSSC
T ss_pred CCCcccccccC-CCCCCHHHHHHHHHHhhhccceEEEEeeecccccccccchhhh---ccCCccccCCccccc---cccc
Confidence 99999999999 9999999999999999999999999999999999875211000 001111112221111 1111
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHH---hcCC-CeEEEec
Q 018278 153 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME---NTSP-DFAVGEK 228 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~---~~~p-~~~~gE~ 228 (358)
+.+.........+...++|||++||+||++|++++++|++++||||||+|+|++++.++++++.+ +.+| ++++||.
T Consensus 156 ~~~~~~~~~~~~~~~~~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~i~e~ 235 (382)
T d1j0ha3 156 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEI 235 (382)
T ss_dssp CCSSSCSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred cccccccccccccCCCCcccccChHHHHHHHHHHHHhHhhhccccEEEecchhhcchhhhhhhhhhhhccCCCccccccc
Confidence 22233344556678899999999999999999999999988999999999999999999999844 4567 8899999
Q ss_pred cCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchh---hh----hhcCCCCCCccCCCCCc
Q 018278 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELW---RL----KDSNGKPPGFIGILPQN 301 (358)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~ 301 (358)
|..... ++ ...+....+++++...+...+.+... .. ...... .....+..
T Consensus 236 ~~~~~~-------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 292 (382)
T d1j0ha3 236 WHDAMP-------------------WL-RGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHS---YPNNVNEA 292 (382)
T ss_dssp SSCCGG-------------------GC-SSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT---SCHHHHHT
T ss_pred cccchh-------------------hh-cccccccccccccchhhhhhhhcccccchhhhhhhhhcccc---cccccCcc
Confidence 865220 01 12345666777777766666533211 10 110000 01112234
Q ss_pred eeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 302 AVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 302 ~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
.++|++|||++|+.+.++...++.++|++++||+||+|+||||||+|+.+..+.
T Consensus 293 ~~~f~~nHD~~R~~~~~~~~~~~~~~a~~lllt~pG~P~iy~G~E~G~~~~~~~ 346 (382)
T d1j0ha3 293 AFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDP 346 (382)
T ss_dssp CBCBSCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSCCEEETTGGGTCCCCSTT
T ss_pred ceeeccCCCCCccccccCChHHHHHHHHHHHHHcCCCCEEEcChhhCcCCCCCc
Confidence 578999999999999888777889999999999999999999999999876554
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=100.00 E-value=3.5e-61 Score=460.76 Aligned_cols=314 Identities=19% Similarity=0.255 Sum_probs=228.7
Q ss_pred cCCCCCCceEEEeeecCCC-----------------------CCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC----
Q 018278 17 FLPFTSPALLFQGFNWESS-----------------------NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---- 69 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~~~~-----------------------~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~---- 69 (358)
..+|.+.+||||+|. +++ +.+||||+||++||||||+||||+||||||++++
T Consensus 5 ~~~~~~~~viY~i~~-~~F~~gd~~nd~~~~~~~~~~~~~~~~~~gGd~~Gl~~kLdyl~~LGv~~I~l~Pi~~~~~~~~ 83 (422)
T d1h3ga3 5 RQGFGPGDAIYQIMP-DRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAY 83 (422)
T ss_dssp CCCCCTTCCEEEECH-HHHCCSCGGGSSCTTCSSCCCTTSTTSCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECCCSSC
T ss_pred cCCCCCCCcEEEeCh-hhccCCCCCcCccCCccccccccccCCCCCcCHHHHHHhHHHHHHCCCCEEEeCCcccCCCCCC
Confidence 357999999999995 321 2346999999999999999999999999999764
Q ss_pred CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCC----cceeeccCCCCCCCCCCCCCc
Q 018278 70 APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR----GIYCIFEGGTSDDRLDWGPSF 145 (358)
Q Consensus 70 ~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 145 (358)
++|||++.||++|+ |+|||.+||++||++||++||+||+|+|+||++.+|++.. ..|..+.. ......+...
T Consensus 84 ~~~GY~~~d~~~vd-~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~- 159 (422)
T d1h3ga3 84 SYHGYAATDHYRID-PRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGG--KFVPTQHHRV- 159 (422)
T ss_dssp GGGCCSCSEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCSSTTSBSCCS--SCCBCCCCGG-
T ss_pred CCCCCCccccCCcc-cccCCHHHHHHHHHHHHHhCccccccCccccccccchhhccccccccccccc--cccccccccc-
Confidence 47899999999999 9999999999999999999999999999999999886211 11111110 1111111100
Q ss_pred ccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHH---hcCC-
Q 018278 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME---NTSP- 221 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~---~~~p- 221 (358)
...+...+.....++....+...++|||++||+||+++++++++|++++||||||+|++++++.+||+++.+ +..|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~vr~~~~~~~~~w~~~~gvDGfR~Da~~~~~~~f~~~~~~~~~~~~~~ 239 (422)
T d1h3ga3 160 AVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEYPR 239 (422)
T ss_dssp GGSCTTCCHHHHHHHHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHHHHHHHHHHHHHCTT
T ss_pred cccccccccCcccceeecccccCccccccccHHHHHHHhhhHHHHhhheeeeeeeecccccccchhhhhhhhhhhhcccc
Confidence 000001111111122344567889999999999999999999999999999999999999999999999844 4556
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHH-------hcCCceeeeccchHHHHHHHHcCc-----hhhhhhcCC
Q 018278 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ-------AAGGAVAAFDFTTKGILQAAVQGE-----LWRLKDSNG 289 (358)
Q Consensus 222 ~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~df~~~~~l~~~~~~~-----~~~~~~~~~ 289 (358)
++++||.|... ...+..+.. ....+...++|.+...+..++... ...+.....
T Consensus 240 ~~~i~E~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (422)
T d1h3ga3 240 LNMVGEEWSTR---------------VPVVARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETLS 304 (422)
T ss_dssp CEEEECCCCSC---------------HHHHHTTSTTCCCTTCCCCCCCEEBCHHHHHHHHHHHHCTTCSSTTHHHHHHHH
T ss_pred ceEEeeccccc---------------hhhhhhhccccccccccccchhhhhhhhHHHHHHHHHhhccccchhHHHHHHHh
Confidence 88999999652 111111111 123456778888888887776321 111111110
Q ss_pred CCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 290 KPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 290 ~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
. ......+...++|++|||++|+.+..+....+.++|++++||+||+|+||||||+|+.+.
T Consensus 305 ~--~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~~~llt~pG~P~iy~G~E~G~~~~ 365 (422)
T d1h3ga3 305 L--DYLYPEPQNLVLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTMPRIPQFYSGDEILMTST 365 (422)
T ss_dssp G--GGGSSSGGGSEEESCCTTSCCHHHHTTSCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCC
T ss_pred h--hcccccccceeeeecccccccccccccccHHHHHHHHHHHHHcCCCcEEEcChhhCCcCC
Confidence 0 011123456789999999999999888777889999999999999999999999998654
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=9.1e-61 Score=451.88 Aligned_cols=309 Identities=21% Similarity=0.306 Sum_probs=232.0
Q ss_pred CCCCCCceEEEeeecCCCCC-----------------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCC
Q 018278 18 LPFTSPALLFQGFNWESSNK-----------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGY 74 (358)
Q Consensus 18 ~~~~~~~v~~q~F~~~~~~~-----------------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY 74 (358)
|+|++++||||++. ++..+ .+|||+||+++|||||+||||+||||||+++.++|||
T Consensus 4 p~W~~~~v~Y~i~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~Pi~~~~~~~gY 82 (382)
T d1ea9c3 4 PAWVKDAIFYQIFP-ERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKY 82 (382)
T ss_dssp CTHHHHCCCCEECS-TTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTT
T ss_pred CccccCCeEEEEEc-chhcCCCCCCCccCcccccccCCCcCccCCcCHHHHHHhhHHHHhCCCCEEEeCCCccCCCCCCC
Confidence 89999999999986 44332 1599999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccC
Q 018278 75 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (358)
Q Consensus 75 ~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (358)
++.||++|+ ++|||++||++||++||++||+||+|+|+||++.+|++... ....+......+|.... .....+.
T Consensus 83 ~~~~~~~id-~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~ 156 (382)
T d1ea9c3 83 DTEDYFQID-PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVD---VLKNGEKSKYKDWFHIR--SLPLEVV 156 (382)
T ss_dssp SCSCTTCCC-TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHH---HHTTTTTCTTTTSSCBC--SSSCCCT
T ss_pred Ccccccccc-cccCCHHHHHHHHHHHHhhcceEEEeeecccccccCcchhh---hhhcCCccccccccccc--ccccccc
Confidence 999999999 99999999999999999999999999999999998752100 01111222222332211 1112223
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC-CeEEEeccC
Q 018278 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGEKWD 230 (358)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p-~~~~gE~~~ 230 (358)
+....+....+...++++|++||+|++++++++++|++++||||||+|++++++.++++.+. ++.+| .+++||.+.
T Consensus 157 ~~~~~~~~~~~~~~~~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~~~e~~~ 236 (382)
T d1ea9c3 157 DGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWH 236 (382)
T ss_dssp TSCCSBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred cCcccccccccccccCccccccHHHHHHHHHHHhhcccceeeeEEEecchhhCchhhhhhhhhhhhhcCCCeeEEeeecc
Confidence 33344555667788999999999999999999999999999999999999999999998884 34567 889999986
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc---hhhhhhcCC-CCCCccCCCCCceeecc
Q 018278 231 SLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNG-KPPGFIGILPQNAVTFI 306 (358)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~v~f~ 306 (358)
... .+ +. .......+++++...+...+.+. ......... .........+...++|+
T Consensus 237 ~~~-------~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (382)
T d1ea9c3 237 ESS-------IW------------LE-GDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLL 296 (382)
T ss_dssp CCT-------TT------------TT-TTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECS
T ss_pred ccc-------cc------------cc-CccccccccccchhhhHhhhhccccchhHHHHHHHHHHHhchhhcccceeeee
Confidence 521 00 11 13455567777777666665332 111111100 00111111234568999
Q ss_pred cCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 307 DNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 307 ~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
+|||+.|+.+......++.++|++++||+||+|+||||||+|+.+..
T Consensus 297 ~nHD~~r~~~~~~~~~~~~~~a~~~~l~~pG~P~Iy~G~E~g~~~~~ 343 (382)
T d1ea9c3 297 DSHDTARLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGH 343 (382)
T ss_dssp CCTTSCCHHHHHCSCHHHHHHHHHHHTTSSSEECCCSSCSSCCCCCS
T ss_pred ccCcccccccccCCHHHHHHHHHHHHHHcCCCCEEEccHhhCCCCCC
Confidence 99999999988776778899999999999999999999999987644
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=9e-61 Score=456.24 Aligned_cols=321 Identities=21% Similarity=0.299 Sum_probs=224.1
Q ss_pred hcCCCCCCceEEEeeecCCCCC-------------------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC-
Q 018278 16 IFLPFTSPALLFQGFNWESSNK-------------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV- 69 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~~~~~~-------------------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~- 69 (358)
++|+|.+++||||+|. |++.+ .||||+||++||||||+||||+||||||++++
T Consensus 1 ~~~~~~~~~v~Y~i~~-drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~ 79 (407)
T d1qhoa4 1 SSSASVKGDVIYQIII-DRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLD 79 (407)
T ss_dssp CTTSCCTTCCEEEECG-GGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECS
T ss_pred CCchhhcCCEEEEech-hhhcCCCCCCCcccccccccCCcccccCccCCcCHHHHHHHHHHHHHcCCCEEEeCccccCCc
Confidence 5799999999999996 54322 25999999999999999999999999998753
Q ss_pred --------CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcc---eeeccCCCCC-C
Q 018278 70 --------APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGI---YCIFEGGTSD-D 137 (358)
Q Consensus 70 --------~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~---~~~~~~~~~~-~ 137 (358)
++|||++.||++|| |+|||++|||+||++||++||+||||+|+||+|..|+..... ...+...... .
T Consensus 80 ~~~~~~~~~~~gY~~~d~~~id-~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~ 158 (407)
T d1qhoa4 80 TLAGTDNTGYHGYWTRDFKQIE-EHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGN 158 (407)
T ss_dssp SCSSTTCCCTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEEC
T ss_pred ccCCCCCCCCCceeeeecCCCC-CCCCCHHHHHHHHHHhhhcccceeeccccccccCCccccccccccCcccccCccccc
Confidence 46999999999999 999999999999999999999999999999999877521110 0000000000 0
Q ss_pred CCCCCCCcc---cCCCCccCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHH
Q 018278 138 RLDWGPSFI---CRGDKEYSDG---QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSI 211 (358)
Q Consensus 138 ~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~ 211 (358)
..++..... ......|.+. ........+...+||||+.||+|++++++++++|++ +||||||+|++++++.+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~-~gvDGfR~D~~~~~~~~f 237 (407)
T d1qhoa4 159 YFDDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHFNSGF 237 (407)
T ss_dssp SSSCTTTCCBCCSCBCSCTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHH
T ss_pred cccccccccccccCCCCCcccccccccccccCCccccCchhhhhhhhHHHHHHHhHHHHhh-hcccccccccccccchhH
Confidence 000000000 0000111100 001112234556899999999999999999999997 999999999999999999
Q ss_pred HHHHHH---hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhhhh
Q 018278 212 TKVYME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLK 285 (358)
Q Consensus 212 ~~~~~~---~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~~~ 285 (358)
|+++.+ +.++++++||++...+ ... ..-....+.. ......++|.+...+...+.. ....+.
T Consensus 238 ~~~~~~~i~~~~~~~~~gE~~~~~~-------~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (407)
T d1qhoa4 238 SKSLADKLYQKKDIFLVGEWYGDDP-------GTA---NHLEKVRYAN--NSGVNVLDFDLNTVIRNVFGTFTQTMYDLN 305 (407)
T ss_dssp HHHHHHHHHHHCCCEEEECCCCCCT-------TST---THHHHHHHHH--HSSCEEBCHHHHHHHHHHHTSCSSCHHHHH
T ss_pred HHHHHHHHHhccCcceeeeecCCCh-------hhh---HHHHhhcccc--ccccceehhhHHHHHHHHhhhcchhhhHHH
Confidence 999844 4456899999986521 110 0111122333 234556788887777776532 222222
Q ss_pred hcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
...... ......+...++|++|||++|+.+..+ +.+++++|++++|++||+|+||||||+|+.+..
T Consensus 306 ~~~~~~-~~~~~~~~~~~~f~~nHD~~R~~~~~~-~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~ 371 (407)
T d1qhoa4 306 NMVNQT-GNEYKYKENLITFIDNHDMSRFLSVNS-NKANLHQALAFILTSRGTPSIYYGTEQYMAGGN 371 (407)
T ss_dssp HHHHHH-HHHCTTGGGCEECSCCTTSCCHHHHCC-CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCS
T ss_pred HHHHHh-hhccccchhhceecccCCccccccccC-CHHHHHHHHHHHHHcCCCcEEecCHhhCCCCCC
Confidence 111000 001113456789999999999988765 677899999999999999999999999997543
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=100.00 E-value=1.3e-59 Score=441.42 Aligned_cols=298 Identities=29% Similarity=0.486 Sum_probs=222.7
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCCCccccC---------CCCCCCCC
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLY---------DLDASKYG 88 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~---~~gY~~~d~~---------~id~~~~G 88 (358)
.+++||+|.|+|+++.. +|.|+||++||||||+||||+|||+||+++.+ +|||++.||| +|+ |+||
T Consensus 7 ~~~~~~~q~f~w~~~~~-~~~~~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd-~~~G 84 (361)
T d1mxga2 7 EEGGVIMQAFYWDVPGG-GIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVE-TRFG 84 (361)
T ss_dssp GGTCCEEECCCTTCCCS-SCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSS-CSSC
T ss_pred ccCCEEEEeeecCCCCC-CchHHHHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCC-CCCC
Confidence 47899999999999974 68899999999999999999999999998654 7999999998 689 9999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCC--cceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR--GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (358)
|++||++||++||++||+||+|+|+||+|..++... .....+..........+... ...+............+
T Consensus 85 t~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 159 (361)
T d1mxga2 85 SKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN-----YLDFHPNELHCCDEGTF 159 (361)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCC-----GGGBSSSSSCSCCSCCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeeeccccCCccccCCccccccccccccccCCCCCcc-----ccccCcccccccccccc
Confidence 999999999999999999999999999998764211 11111111001000001000 00111111122233445
Q ss_pred CCCCCCCCCCHHHHHHHHHH---HHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCCCCCCCCCCC
Q 018278 167 QPAPDIDHLNPRVQKELSDW---MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDAN 243 (358)
Q Consensus 167 ~~~~dln~~n~~v~~~l~~~---~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~~~ 243 (358)
..++|+++.++.|+.++.+. +.+|++++||||||+|+|++++.+||+++.+..+ .+++||+|+.
T Consensus 160 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v~~~f~~~~~~~~~-~~~~gE~~~~------------ 226 (361)
T d1mxga2 160 GGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWG-GWAVGEYWDT------------ 226 (361)
T ss_dssp TTSCBBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHC-CCEEECCCCS------------
T ss_pred cCcccccCCcchhHHHHHHHHHHHhhhhhhcCCcceeecchhhCCHHHHHHHHhhcC-CceecccccC------------
Confidence 67899999999999999653 3455566999999999999999999999988765 4679999954
Q ss_pred CCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-chhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCc
Q 018278 244 QDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 322 (358)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~ 322 (358)
..+.+..|.... ...+|||++...+..++.+ ....+..............|.++++|++|||++|+.+
T Consensus 227 ---~~~~~~~~~~~~--~~~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~R~~~------ 295 (361)
T d1mxga2 227 ---NVDALLSWAYES--GAKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWN------ 295 (361)
T ss_dssp ---CHHHHHHHHHHH--TSEEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSC------
T ss_pred ---CHHHHhhhhhcc--CCccccchHHHHHHHHHhcCChHHHHHHHhhccccccCCHHHheeeCcccCCccccc------
Confidence 256677776643 3567999999999998854 3333333333333444556788999999999998754
Q ss_pred chHHHHHHHHHcCCCeeeeecCccccCCC
Q 018278 323 DKVMLGYAYILTHPGTPCIVISVTYPLFH 351 (358)
Q Consensus 323 ~~~~~a~a~l~~~pG~P~IyyGdE~G~~~ 351 (358)
.++|+|++||+||+|+||||||.+...
T Consensus 296 --~~~a~a~llt~pGiP~iyYGd~~~~~~ 322 (361)
T d1mxga2 296 --KYPAYAFILTYEGQPVIFYRDFEEWLN 322 (361)
T ss_dssp --HHHHHHHHHHSSSEEEEEHHHHHTTSC
T ss_pred --HHHHHHHHHcCCCccEEEeCCCcccCC
Confidence 468999999999999999999887653
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=2.9e-61 Score=455.87 Aligned_cols=308 Identities=19% Similarity=0.288 Sum_probs=226.5
Q ss_pred cCCCCCCceEEEeeecCC----CCC------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--------CCC
Q 018278 17 FLPFTSPALLFQGFNWES----SNK------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQ 72 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~~~----~~~------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--------~~~ 72 (358)
.++| +++|+||+|. ++ +++ .||||+||++||||||+||||+|||+||+++. .+|
T Consensus 3 ~~~W-~~~~iY~i~~-~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2aaaa2 3 AASW-RTQSIYFLLT-DRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYH 80 (381)
T ss_dssp HHHH-TTCCEEECCH-HHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTT
T ss_pred chhh-CCCcEEEEEe-CcccCCCCCCCCCCCCCcCCcCCcCHHHHHHHHHHHHHcCCCEEEeCCCccCCccCCCCCCCCc
Confidence 4566 7889999975 32 221 15999999999999999999999999999743 468
Q ss_pred CCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCc
Q 018278 73 GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE 152 (358)
Q Consensus 73 gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (358)
||++.||++|| ++|||+++||+||++||++||+||+|+|+||++.+++.....+..+....... .+.+.... ..
T Consensus 81 gY~~~d~~~id-~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~ 154 (381)
T d2aaaa2 81 GYWQQKIYDVN-SNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSS--YFHPYCLI---TD 154 (381)
T ss_dssp SCSEEEEEEEC-TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGG--GBCCCCBC---CC
T ss_pred ccccccccccc-cccCCHHHHHHHHHHHhhhhhcccccccccccccccCCccccccccCCccccc--ccCCCccc---cc
Confidence 99999999999 99999999999999999999999999999999998865444443332211100 00000000 00
Q ss_pred cCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccC
Q 018278 153 YSD--GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWD 230 (358)
Q Consensus 153 ~~~--~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~ 230 (358)
|.+ ...++..+.....+||||+.||+||+++++++++|++++||||||+|++++++.+||+++.++ .+++++||++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f~~~~~~~-~~~~~igE~~~ 233 (381)
T d2aaaa2 155 WDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKA-SGVYCVGEIDN 233 (381)
T ss_dssp TTCHHHHHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHH-HTSEEEECCCC
T ss_pred cccccccCCCccCCccccCccccccchhhhhHHhhhhhhcccceeeeeeeecccccccHHHHHHHHhc-ccccccccccC
Confidence 110 001122344567889999999999999999999999999999999999999999999998554 34889999985
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhhhhhcCCCCCCccCCCCCceeeccc
Q 018278 231 SLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPPGFIGILPQNAVTFID 307 (358)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~f~~ 307 (358)
.. ......+ ......++||++...+..++.+ ....+.+...... .....+...++|++
T Consensus 234 ~~---------------~~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fl~ 294 (381)
T d2aaaa2 234 GN---------------PASDCPY---QKVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVA-SDCSDPTLLGNFIE 294 (381)
T ss_dssp SC---------------HHHHGGG---GGTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHH-HHCSCGGGSEECSC
T ss_pred CC---------------chhhhcc---ccccccccchhHHHHHHHHHhcCCccHHHHHHHHHhhh-hccCCchhhccccc
Confidence 41 1111111 2345678999998888887633 2223222111000 01123556789999
Q ss_pred CCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 308 NHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 308 nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
|||++|+.+..+ +.++.++|++++||+||+|+||||||+|+.+..
T Consensus 295 nHD~~R~~~~~~-~~~~~~~a~a~llt~pG~P~iy~G~E~g~~g~~ 339 (381)
T d2aaaa2 295 NHDNPRFAKYTS-DYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGK 339 (381)
T ss_dssp CTTSCCGGGTCC-CHHHHHHHHHHHHHSSSEEEEETTTTTTCCCCT
T ss_pred cCCchhhhcccC-CHHHHHHHHHHHHHcCCCcEeEcCcccCCCCCC
Confidence 999999998876 667899999999999999999999999986543
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=4.6e-60 Score=451.10 Aligned_cols=314 Identities=19% Similarity=0.286 Sum_probs=227.5
Q ss_pred hcCCCCCCceEEEeeecCCCCC----------------------CCCchHHHHhhhh--hHHHcCCCEEEeCCCCCC---
Q 018278 16 IFLPFTSPALLFQGFNWESSNK----------------------AGGWYNSLKNSIP--DLSNAGITHVWLPPPSQS--- 68 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~~~~~~----------------------~~G~~~gl~~~L~--yl~~LGv~~I~l~Pi~~~--- 68 (358)
..+...+++||||+|. |.+.+ .||||+||++||| |||+||||+|||+||+++
T Consensus 7 ~~~~~~~~~viY~i~~-drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi~~~~~~ 85 (406)
T d3bmva4 7 SNVVNYSTDVIYQIVT-DRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYA 85 (406)
T ss_dssp TCTTCCTTCCEEECCG-GGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCEEECCC
T ss_pred CCCCCCccCeEEEech-hhccCCCCCCCCCCCccCCCCCccCccCCcCHHHHHHhcCHHHHHHcCCCEEEECCccccccc
Confidence 3455678899999996 54422 1799999999999 999999999999999873
Q ss_pred ----------CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCc---ceeeccC---
Q 018278 69 ----------VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG---IYCIFEG--- 132 (358)
Q Consensus 69 ----------~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~---~~~~~~~--- 132 (358)
.++|||++.||++|| |+|||++|||+||++||++||+||+|+|+||+|..|+.... ....+..
T Consensus 86 ~~~~~~~~~~~~~~gY~~~d~~~vd-p~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~ 164 (406)
T d3bmva4 86 VLPDSTFGGSTSYHGYWARDFKRTN-PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTL 164 (406)
T ss_dssp CEEETTTEEECSTTSCSEEEEEEEC-TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEE
T ss_pred ccCCCCCCCChhhcCcccccccccC-cccccHHHHHHHHHHHHhccccceeeeecccccccccchhhhcccCccccCCcc
Confidence 357999999999999 99999999999999999999999999999999998763211 0000000
Q ss_pred --CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHH
Q 018278 133 --GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210 (358)
Q Consensus 133 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~ 210 (358)
........|...+... .|.. ...........+||||++||+|++++++++++|++ +||||||+|++++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~-~giDGfR~D~~~~~~~~ 238 (406)
T d3bmva4 165 LGGYTNDTNGYFHHYGGT---DFSS--YEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHMPFG 238 (406)
T ss_dssp EECSTTCTTCCBCCSCBC---CCSS--HHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGSCHH
T ss_pred ccccccccccccccccCc---cccc--cccccccccccccccccccHHHHHHHHHHHHHHhh-cCCCccccccccccchh
Confidence 1111111222111110 0100 00112234467999999999999999999999997 99999999999999999
Q ss_pred HHHHH---HHhcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc---hhhh
Q 018278 211 ITKVY---MENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRL 284 (358)
Q Consensus 211 ~~~~~---~~~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~---~~~~ 284 (358)
||+++ +++.+|.++++|.+.... .......+... .....++||.+...+...+.+. ...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~e~~~~~~-------------~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 304 (406)
T d3bmva4 239 WQKNFMDSILSYRPVFTFGEWFLGTN-------------EIDVNNTYFAN-ESGMSLLDFRFSQKVRQVFRDNTDTMYGL 304 (406)
T ss_dssp HHHHHHHHHHHHSCCEEEECCCCCTT-------------CCCHHHHHHHH-HSSSEEBCHHHHHHHHHHHTSCSSCHHHH
T ss_pred hHHHHHHHHHHhhhcccccccccccc-------------ccccccccccC-CCccceecchhhHHHHHhhccCcchhHHH
Confidence 99998 455678999999986521 12233344443 3456789999998888877432 2222
Q ss_pred hhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 285 KDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
....... ......+...++|++|||++|+.+.. ..+++++|++++||+||+|+||||||+|+.+..+
T Consensus 305 ~~~~~~~-~~~~~~~~~~~~fl~nHD~~R~~~~~--~~~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~d 371 (406)
T d3bmva4 305 DSMIQST-ASDYNFINDMVTFIDNHDMDRFYNGG--STRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGD 371 (406)
T ss_dssp HHHHHHH-HHHCTTGGGCEECSCCSSSCCSCCSS--CSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCST
T ss_pred HHHHhhh-cccccchhhhcccccCCchhhhccCC--CHHHHHHHHHHHHHhCCCCEEecChhhCcCCCCC
Confidence 1111100 00111345678999999999988753 5678899999999999999999999999986544
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=9.7e-61 Score=452.30 Aligned_cols=312 Identities=20% Similarity=0.250 Sum_probs=227.0
Q ss_pred CCCCCCceEEEeeec---CCCCCC------------CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--------CCCCC
Q 018278 18 LPFTSPALLFQGFNW---ESSNKA------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------APQGY 74 (358)
Q Consensus 18 ~~~~~~~v~~q~F~~---~~~~~~------------~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--------~~~gY 74 (358)
|..++++||||+|.- ++++++ ||||+||+++|||||+||||+||||||+++. ++|||
T Consensus 3 p~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY 82 (381)
T d2guya2 3 PADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGY 82 (381)
T ss_dssp HHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTSC
T ss_pred CccccCCeEEEEEcchhcCCCCCCCCCCCCccCccCCcCHHHHHHhHHHHHHCCCCEEEeCCCCCCCcccCCCCCCCCCc
Confidence 333477899999851 333332 4999999999999999999999999999853 47999
Q ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccC
Q 018278 75 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (358)
Q Consensus 75 ~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (358)
++.||++|+ |+|||++|||+||++||++||+||+|+|+||+|.+++.....+..+.+... ..+.............
T Consensus 83 ~~~d~~~vd-~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 158 (381)
T d2guya2 83 WQQDIYSLN-ENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSS---QDYFHPFCFIQNYEDQ 158 (381)
T ss_dssp SEEEEEEEC-TTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCS---GGGBCCSCBCCCTTCH
T ss_pred ccccccccc-cCCCCHHHHHHHHHHHHhhccceeeeccccccccccCcccccccccCCCCc---ccceeccccccccccc
Confidence 999999999 999999999999999999999999999999999988744433333332111 1111000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCCCeEEEeccCCCCC
Q 018278 155 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 234 (358)
Q Consensus 155 ~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p~~~~gE~~~~~~~ 234 (358)
....++..+.+...+|+||++||+||+++++++++|+.++||||||+|+|++++.+||+++.+.. .++++||+|...
T Consensus 159 ~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~-~~~~igE~~~~~-- 235 (381)
T d2guya2 159 TQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAA-GVYCIGEVLDGD-- 235 (381)
T ss_dssp HHHHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHH-TSEEEECCCCSC--
T ss_pred cccceeeccCCccccchhccccHHHHHHHHHHhhhccccccccceeeehHhhcCHHHHHhhhhcc-eeeeeeeccccc--
Confidence 01112233455667899999999999999999999988899999999999999999999987653 378999999641
Q ss_pred CCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhhhhhcCCCCCCccCCCCCceeecccCCCC
Q 018278 235 GPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (358)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~ 311 (358)
......+ ......+++|.+...+.+++.+ +...+.+....... ........++|++|||+
T Consensus 236 -------------~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~enHD~ 298 (381)
T d2guya2 236 -------------PAYTCPY---QNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKS-DCPDSTLLGTFVENHDN 298 (381)
T ss_dssp -------------HHHHGGG---GGTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHH-HSSCGGGSEECSCCTTS
T ss_pred -------------Hhhhccc---cccccceecchhHHHHHHHHhccCCchHHHHHHHHHHHh-hcCccccceeeccCcCc
Confidence 2222222 2345677999988888887743 22222221110000 01123456799999999
Q ss_pred CcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 312 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 312 ~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
+|+.+..+ +.++.++|++++||+||+|+||||||+|+.+..+
T Consensus 299 ~R~~s~~~-~~~~~~~a~~~l~t~pGiP~iy~G~E~g~~g~~~ 340 (381)
T d2guya2 299 PRFASYTN-DIALAKNVAAFIILNDGIPIIYAGQEQHYAGGND 340 (381)
T ss_dssp CCGGGTCC-CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCST
T ss_pred cccccccC-CHHHHHHHHHHHHHcCCCcEEEcccccCcCCCCC
Confidence 99999876 6778899999999999999999999999986444
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=9e-60 Score=445.20 Aligned_cols=308 Identities=20% Similarity=0.297 Sum_probs=226.9
Q ss_pred hcCCCCCCceEEEeeecCCCCC------------------------CCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCC
Q 018278 16 IFLPFTSPALLFQGFNWESSNK------------------------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP 71 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~~~~~~------------------------~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~ 71 (358)
.+|.|++.+||||+|. ++..+ .+|||+||++||||||+||||+||||||++++++
T Consensus 3 ~~P~w~~~~viY~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~Pv~~~~~~ 81 (382)
T d1wzla3 3 TTPEWAKEAVIYQIFP-ERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSH 81 (382)
T ss_dssp CCCSGGGGCCEEEECG-GGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSS
T ss_pred CCCccccCCEEEEEEc-chhcCCCCCCCCccccccccccccccCCCCCcCHHHHHHhhHHHHHCCCCEEEECCcCCCCcc
Confidence 5799999999999986 43221 1599999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCC
Q 018278 72 QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDK 151 (358)
Q Consensus 72 ~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (358)
|||++.||++|| |+|||.+||++||++||++||+||+|+|+||++.+|+....... ........+|.... ....
T Consensus 82 ~gY~~~~~~~vd-~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~ 155 (382)
T d1wzla3 82 HKYDTADYLAID-PQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQ---KGEQSRYKDWFFIE--DFPV 155 (382)
T ss_dssp SCCSCSEEEEEC-TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHH---HGGGCTTGGGBCBS--SSSC
T ss_pred cCCccccccccc-cCCCCHHHHHHHHHHHHhcccceEeeeeecccccccccccchhh---cCcccccccccccc--cccc
Confidence 999999999999 99999999999999999999999999999999988752110000 00000011111000 0000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHH---HhcCC-CeEEEe
Q 018278 152 EYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGE 227 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~---~~~~p-~~~~gE 227 (358)
.............+...+||||++||+|++++++++++|++ +||||||+|++++++.++|+.+. ++.+| .+++||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~dLn~~n~~v~~~~~~~~~~w~~-~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~~i~e 234 (382)
T d1wzla3 156 SKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWME-QGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGE 234 (382)
T ss_dssp CCSSCCSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred ccCCCCcccccccccccCCccCCCCHHHHHHHHHHHHHHHH-cCCCceeecchhhcchhhhhHHHHHHHhhCCceEEeee
Confidence 11111122334567788999999999999999999999998 89999999999999999998884 45567 889999
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc-Cchh--h-----hhhcCCCCCCccCCCC
Q 018278 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELW--R-----LKDSNGKPPGFIGILP 299 (358)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~-~~~~--~-----~~~~~~~~~~~~~~~~ 299 (358)
.+..... ++. ..+....+++.+...+..... +... . ...... .....+
T Consensus 235 ~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 290 (382)
T d1wzla3 235 IWHDASG-------------------WLM-GDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARML----YPEQAA 290 (382)
T ss_dssp CSSCCGG-------------------GCS-SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTT----SCHHHH
T ss_pred cccccch-------------------hhc-ccccchhhhhhHHHHHHHhhhcCccchhhHHHHHHhhhhc----cccccc
Confidence 9865210 000 123455667776666555442 1110 0 000000 111123
Q ss_pred CceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 300 ~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
...++|++|||++|..+.+..+.++.++|++++||+||+|+||||||+|+.+..|.
T Consensus 291 ~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~llt~pG~P~iy~G~E~g~~g~~~~ 346 (382)
T d1wzla3 291 QGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDP 346 (382)
T ss_dssp TTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTT
T ss_pred ccceeeecCCCccchHhhcCCCHHHHHHHHHHHHHcCCCCEEEcCcccCCCCCCCc
Confidence 45689999999999998887778889999999999999999999999999876664
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.9e-58 Score=433.54 Aligned_cols=297 Identities=24% Similarity=0.347 Sum_probs=219.1
Q ss_pred eEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q 018278 25 LLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (358)
Q Consensus 25 v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H 101 (358)
|+||+|.. |++++|.|||+||++||||||+||||+|||+||+++.++|||++.||++|| |+|||.+||++||++||
T Consensus 2 v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~~~GY~~~d~~~vd-~~~Gt~~d~~~lv~~~h 80 (391)
T d1lwha2 2 IGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFK-AEYGSEREFKEMIEAFH 80 (391)
T ss_dssp CEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHTTCSEEEECCCEECSSSSCCSCSEEEEEC-GGGCCHHHHHHHHHHHH
T ss_pred EEEEEccccccCCCCCCccCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCCccCCCCcC-cccCCHHHHHHHHHHHH
Confidence 67777642 667788899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HcCCEEEEEeecccccccCCCC---------CcceeeccCCCC--CCCCCCCCCcccCCCCcc-CCCCCCCCCCCCCCCC
Q 018278 102 QKGIKCLADMVINHRTAERKDG---------RGIYCIFEGGTS--DDRLDWGPSFICRGDKEY-SDGQGNDDTGEDFQPA 169 (358)
Q Consensus 102 ~~Gi~VilD~V~NH~~~~~~~~---------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 169 (358)
++||+||+|+|+||++..|+.. ..+++.+.+... .....|... ..| ....+.+..+.+...+
T Consensus 81 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 154 (391)
T d1lwha2 81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGE------KIWHPLEDGRFYRGLFGPFS 154 (391)
T ss_dssp HTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCC------BCEEECTTSCEEECTTCTTS
T ss_pred hcCCEEeecccccccccccccccccccCCccccccceecCCccccCccccCCCC------ccccccCCCcccccccCCcC
Confidence 9999999999999999987511 112222222111 111111111 011 1123445566777899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH------HHHHHHHHhcCCCeEEEeccCCCCCCCCCCCCCC
Q 018278 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP------SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDAN 243 (358)
Q Consensus 170 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~------~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~~~ 243 (358)
||||++||+||++|++++++|++ +||||||+|+|++++. .+|+++.++.+ .+.++|.|....
T Consensus 155 pdln~~n~~v~~~i~~~~~~w~e-~gvDGfR~Daa~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~---------- 222 (391)
T d1lwha2 155 PDLNYDNPQVFDEMKRLVLHLLD-MGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLK-GIFLAEIWAEAR---------- 222 (391)
T ss_dssp CBBCTTSHHHHHHHHHHHHHHHH-HTCCEEEETTGGGSSSSHHHHHHHHHHHHTTCC-SEEEECCCSCSS----------
T ss_pred CccccccchhhHHHHHHHHHHhh-cCCCcceechHHHHHHhhhhhhHHHHHHHHHhh-hhhhhhhhcccc----------
Confidence 99999999999999999999997 9999999999999985 45666665543 578899886421
Q ss_pred CCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc-CchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCC-C
Q 018278 244 QDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF-P 321 (358)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~-~ 321 (358)
....+ . ......++|.+...+..++. .....+....... ........++|++|||+.|..+..+. .
T Consensus 223 ------~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~nhD~~~~~~~~~~~~ 290 (391)
T d1lwha2 223 ------MVDEH-G--RIFGYMLNFDTSHCIKEAVWKENTRVLIESIERA---VIAKDYLPVNFTSNHDMSRLASFEGGFS 290 (391)
T ss_dssp ------SHHHH-H--HHHEEEECHHHHHHHHHHHHHTCTHHHHHHHHHH---TSSCSSEEEEESCCTTSCCGGGGGGCCC
T ss_pred ------eeecc-c--cccCceecccHHHHHHHHHhhccHHHHHHHHHhh---cccCCcccccccccccccccccccccch
Confidence 11111 1 12355688888887777653 2222222221100 11123456899999999998877653 4
Q ss_pred cchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 322 SDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 322 ~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
.++.++|++++||+||+|+||||||+|+.+.
T Consensus 291 ~~~~~~a~~lllt~pG~P~IyyGdE~G~~~~ 321 (391)
T d1lwha2 291 KEKIKLSISILFTLPGVPLVFYGDELGMKGV 321 (391)
T ss_dssp HHHHHHHHHHHTTSSSEEEEETTGGGTCCCC
T ss_pred hhHHHHHHHHhhcCCCCCEEecchhcCCcCC
Confidence 5688999999999999999999999998754
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=2.2e-58 Score=438.49 Aligned_cols=306 Identities=21% Similarity=0.324 Sum_probs=228.7
Q ss_pred CCCCceEEEeeec---CCCCCCCCchHHHHhhhhhH--------HHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC
Q 018278 20 FTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDL--------SNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG 88 (358)
Q Consensus 20 ~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl--------~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G 88 (358)
|-+++||||+|.. |+++++.|||+||++||||| |+||||+||||||++++++|||++.||++|| |+||
T Consensus 1 ~~k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~~GY~~~d~~~vd-~~~G 79 (409)
T d1wzaa2 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKIN-PDYG 79 (409)
T ss_dssp CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEEC-GGGC
T ss_pred CCCccEEEEEecchhcCCCCCCCcCHHHHHHhccccccccccHHhhcCccEEEECCCCCCCCCCCcCcccCCCcC-cccC
Confidence 3468899999642 66667789999999999998 7999999999999999999999999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCC----------CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCC
Q 018278 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158 (358)
Q Consensus 89 t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (358)
|.+|||+||++||++||+||+|+|+||++.+|+. ...+|+.+.+........ .......+.....
T Consensus 80 ~~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 154 (409)
T d1wzaa2 80 TLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKET-----KLDGGRVWHYSPT 154 (409)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBC-----SSSCBCSEEEETT
T ss_pred CHHHHHHHHHHHHhcCCEEEEecccccccccCcchhhhhccccccccccccccccccccCcc-----ccCCCcccccccc
Confidence 9999999999999999999999999999998741 222344443321111100 0011111222223
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC--------HHHHHHHHH---hcCCCeEEEe
Q 018278 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA--------PSITKVYME---NTSPDFAVGE 227 (358)
Q Consensus 159 ~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~--------~~~~~~~~~---~~~p~~~~gE 227 (358)
....+.++..++|||+.||+||+++++++++|++ +||||||+|+++++. .++|+++.+ +.+|.++++|
T Consensus 155 ~~~~~~~~~~~~dln~~n~~vr~~~~~~~~~wi~-~gVDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 233 (409)
T d1wzaa2 155 GMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLK-QGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGE 233 (409)
T ss_dssp EEEECSSCTTSCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEE
T ss_pred ccccccCCCCCcccccccHHHHHHHHHHHHHHHH-cCCCeecccchhhcccchhccchhHHHHHHHHhhccCCCcEEEEE
Confidence 3445677899999999999999999999999998 799999999999984 357877744 4567899999
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-ch-------hhhhhcCCCCCCccCCCC
Q 018278 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-EL-------WRLKDSNGKPPGFIGILP 299 (358)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~~-------~~~~~~~~~~~~~~~~~~ 299 (358)
.+.. .+.+..+.. .+....+++.+...+...... .. ..+...... .....+
T Consensus 234 ~~~~----------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 292 (409)
T d1wzaa2 234 VWDI----------------SETVAPYFK--YGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDR---EVGFGN 292 (409)
T ss_dssp CCSC----------------HHHHGGGGT--TTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH---HTCTTS
T ss_pred eecC----------------ccchhhhhh--cccccchhhhHHHHHHHHHhccCccchHHHHHHHHHhhhh---hhcccc
Confidence 9864 333444433 456777888877766655421 11 111110000 001112
Q ss_pred CceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCC
Q 018278 300 QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPL 353 (358)
Q Consensus 300 ~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~ 353 (358)
...++|++|||++|..+.++.+.++.++|++++||+||+|+||||||+|+.+..
T Consensus 293 ~~~~~f~~nhD~~r~~~~~~~~~~~~~~~~~~~lt~pG~P~iy~G~E~G~~~~~ 346 (409)
T d1wzaa2 293 YIDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQG 346 (409)
T ss_dssp CCCBCBSCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSCCEEETTGGGTCCCCS
T ss_pred ccccccccccccCccccccCCchHHHHHHHHHHHhCCCCCEEecChhhCccCCC
Confidence 334689999999999998887888999999999999999999999999998754
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3.1e-59 Score=435.80 Aligned_cols=285 Identities=22% Similarity=0.282 Sum_probs=206.1
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-----------CCCCCccccCCCCCCCCCC
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-----------PQGYMPGRLYDLDASKYGS 89 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-----------~~gY~~~d~~~id~~~~Gt 89 (358)
.++.||+|.|.| +|++|+++|||||+||||+||||||++++. +|||+|.||++|| |+|||
T Consensus 3 ~~~~~i~~~f~~--------~f~~i~~~ldyl~~lGv~aIwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd-~~~Gt 73 (344)
T d1ua7a2 3 IKSGTILHAWNW--------SFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGN-RYLGT 73 (344)
T ss_dssp TTTSCEEECTTB--------CHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEE-TTTEE
T ss_pred CCCCeEEEecCC--------cHHHHHHhHHHHHHcCCCEEEeCCCeeCCCcCCCCCCCCCCccccccccCCCCC-CCCCC
Confidence 367899999986 599999999999999999999999998652 5899999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (358)
++|||+||++||++||+||+|+|+||+|.+|+.....+.. ...|..... ....|.+. .......+.++
T Consensus 74 ~~df~~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~--~~~~~~~~~~l 141 (344)
T d1ua7a2 74 EQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKS--------IPNWTHGNT--QIKNWSDR--WDVTQNSLLGL 141 (344)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTSCHHHHT--------STTCEEECC--BCCCTTCH--HHHHHSBBTTB
T ss_pred HHHHHHHHHHhcccceeEeeccceeeecCCCchhhccccC--------CcccccCCC--CCCCCCCC--cCcccCccccC
Confidence 9999999999999999999999999999998743321100 011111000 00011100 01122345679
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH----HHHHHH---HHhcCCCeEEEeccCCCCCCCCCCCCC
Q 018278 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITKVY---MENTSPDFAVGEKWDSLSYGPDGKPDA 242 (358)
Q Consensus 170 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~----~~~~~~---~~~~~p~~~~gE~~~~~~~~~~~~~~~ 242 (358)
||||++||+||++|++++++|++ +||||||+|+|+||+. .+++++ +++..+.|++||+|.+..
T Consensus 142 ~Dln~~np~Vr~~l~~~~~~w~~-~giDGfR~Daakhv~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~--------- 211 (344)
T d1ua7a2 142 YDWNTQNTQVQSYLKRFLERALN-DGADGFRFDAAKHIELPDDGSYGSQFWPNITNTSAEFQYGEILQDSA--------- 211 (344)
T ss_dssp CEECTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCTTSGGGCCSHHHHHTCSSCSEEEECCCCSTT---------
T ss_pred CccccCChHHHHHHHHHHHHHHh-cCCCeEEEeeeeccCchhhHHHHHHHHHHHHhcCCceEEEEEeeccc---------
Confidence 99999999999999999999997 8999999999999976 344443 333456899999996521
Q ss_pred CCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC---chhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCC
Q 018278 243 NQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP 319 (358)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~ 319 (358)
.....|.. .....+|.+...+..++.+ ....+..... ...+.++++|++|||+.|......
T Consensus 212 ------~~~~~~~~----~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~v~f~~NHD~~r~~~~~~ 275 (344)
T d1ua7a2 212 ------SRDAAYAN----YMDVTASNYGHSIRSALKNRNLGVSNISHYAS------DVSADKLVTWVESHDTYANDDEES 275 (344)
T ss_dssp ------CCHHHHHT----TSEEECHHHHHHHHHHHHHTCCCHHHHSSCSS------SSCGGGEEECSSCHHHHHSTTCSS
T ss_pred ------hhhhhhcc----CCccccccccchHHHHHhcCCcchhhHHHHHh------cCCHhhhchHhhcCCCCCCccccc
Confidence 12233432 2334555555566666532 2333322211 123467899999999988655433
Q ss_pred --CCcchHHHHHHHHHcCC-CeeeeecCccccCCCC
Q 018278 320 --FPSDKVMLGYAYILTHP-GTPCIVISVTYPLFHP 352 (358)
Q Consensus 320 --~~~~~~~~a~a~l~~~p-G~P~IyyGdE~G~~~~ 352 (358)
....+.++|+|+++++| |+|+||||||+|+.+.
T Consensus 276 ~~~~~~~~~la~a~ll~~~~G~P~iY~G~E~G~~~~ 311 (344)
T d1ua7a2 276 TWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGGNGV 311 (344)
T ss_dssp TTCCHHHHHHHHHHHHTSSSSEEEEECCCTTCBTTB
T ss_pred ccCCHHHHHHHHHHHHHhCCCeEEEEechhccCCCC
Confidence 24456789999999887 9999999999998764
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=8.4e-58 Score=443.85 Aligned_cols=319 Identities=17% Similarity=0.220 Sum_probs=221.9
Q ss_pred cCCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCCCCCCCHHH
Q 018278 17 FLPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQAD 92 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d 92 (358)
.|+|++++||||+|.- +++++++|||+||++||||||+||||+||||||++++ ++|||++.||++|| |+|||++|
T Consensus 2 ~P~W~~~~viYei~~~~F~d~~~~~~Gd~~Gi~~kLdyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd-~~~Gt~~d 80 (478)
T d1m53a2 2 YPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIM-KEYGTMED 80 (478)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCHHH
T ss_pred CCcccccCeEEEEecchhcCCCCCCccCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCcCccCCCCcC-cccCCHHH
Confidence 4899999999999851 4556778999999999999999999999999999985 58999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccccCC----------CCCcceeeccCCCCC-CCCCCCCCcccCCCCccCCCCCCCC
Q 018278 93 LKSLIQAFRQKGIKCLADMVINHRTAERK----------DGRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDD 161 (358)
Q Consensus 93 ~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (358)
|++||++||++||+||||+|+||+|.+|+ .+...++.+.++... ++..|... .......+....+.+.
T Consensus 81 f~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 159 (478)
T d1m53a2 81 FDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSF-FGGSAWQKDAKSGQYY 159 (478)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCT-TSSBSEEECTTTCCEE
T ss_pred HHHHHHHHHHCCCEEEeccccccccccCchhhhcccCCCCCccccccccCCCcCCCCcccccc-CCCCccccccccCccc
Confidence 99999999999999999999999999874 122334444443222 22222211 1111223333445566
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH--------------------------HHHHHH
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--------------------------SITKVY 215 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~--------------------------~~~~~~ 215 (358)
...+...++|+|+.+|+|+++|++++++|++ +||||||+|+|+++.. .+++++
T Consensus 160 ~~~~~~~~~dln~~~~~V~~~i~~~~~~w~e-~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (478)
T d1m53a2 160 LHYFARQQPDLNWDNPKVREDLYAMLRFWLD-KGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEM 238 (478)
T ss_dssp ECSSCTTCCBBCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHHH
T ss_pred ccCcCCCCCcccchhHHHHHHHHHHHHHHHh-cCCceeccccceeecccccccccchhhhhccchhhccchhHHHHHHHH
Confidence 6778889999999999999999999999996 9999999999998742 233333
Q ss_pred HH---hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-CCceeeeccchHHHHHHHH------cCchhhhh
Q 018278 216 ME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQAAV------QGELWRLK 285 (358)
Q Consensus 216 ~~---~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~l~~~~------~~~~~~~~ 285 (358)
.. ...+.+++||.+... .+....|.... ......++|.+........ ......+.
T Consensus 239 ~~~~~~~~~~~~~~e~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (478)
T d1m53a2 239 NRKVLSRYDVATAGEIFGVP---------------LDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFR 303 (478)
T ss_dssp HHHTGGGSCCEEEEECTTCC---------------GGGTHHHHCGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHH
T ss_pred HHHHhhccccceeeeecCCC---------------HHHHHhhhcccCCccccccchhhhhhhhhhhhhhccccccHHHHH
Confidence 22 233478999998541 23334444322 2344455554432111100 00011111
Q ss_pred hcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCC-----cchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~-----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
......... .......+.+++|||++|+.+.++.. .++.++|++++||+||+|+||||||+|+.+..+
T Consensus 304 ~~~~~~~~~-~~~~~~~~~~~~nhd~~R~~~~~~~~~~~~~~~~~~~~~~lllt~pGiP~iyyGdEiG~~~~~~ 376 (478)
T d1m53a2 304 QIISKMDVT-VGKYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNYPF 376 (478)
T ss_dssp HHHHHHHHH-HTTTCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTTTCCCCCC
T ss_pred HHHHHHHhh-hcccccceeeccCCCCcccccccCCchHHHHHHHHHHHHHHHHhCCCCCEEecccccCCcCCCc
Confidence 000000000 00123346899999999988766533 235678889999999999999999999987543
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=100.00 E-value=3.7e-56 Score=416.67 Aligned_cols=297 Identities=21% Similarity=0.300 Sum_probs=212.7
Q ss_pred CceEEEeeecCCCCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCCC----CCCCCccccCCCCCCCCCCHHHHHHHH
Q 018278 23 PALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA----PQGYMPGRLYDLDASKYGSQADLKSLI 97 (358)
Q Consensus 23 ~~v~~q~F~~~~~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~~----~~gY~~~d~~~id~~~~Gt~~d~~~Lv 97 (358)
..+|+|.|+|. |++|++++ +|||+||||+||||||+++++ +|||+|.| |+|+ |+|||++|||+||
T Consensus 2 ~~~~~~~f~w~--------~~~i~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~d-y~vd-~~~Gt~~dfk~LV 71 (354)
T d1g94a2 2 PTTFVHLFEWN--------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVS-YELQ-SRGGNRAQFIDMV 71 (354)
T ss_dssp CCCEEEETTCC--------HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSC-SCSC-BTTBCHHHHHHHH
T ss_pred CcceEEcccCC--------HHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCc-ceeC-CCCCCHHHHHHHH
Confidence 35899999994 99999887 699999999999999999864 47999999 5799 9999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCC-CCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 018278 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLN 176 (358)
Q Consensus 98 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n 176 (358)
++||++||+||+|+|+||++.+++........+....+. ....+..... .....+. ..........+..+||||++|
T Consensus 72 ~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~dln~~n 149 (354)
T d1g94a2 72 NRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESCT-INNSDYG-NDRYRVQNCELVGLADLDTAS 149 (354)
T ss_dssp HHHHHTTCEEEEEEECSEECSSCEEBTTSCEEBTTBCSSCCGGGBCCCCB-CCTTHHH-HCHHHHHHSBSTTCEEBCTTS
T ss_pred HHHhccCceeEEEeeccccccccCCCcccccccccCCCcCCccccccCCC-CCCcccc-ccccceeccccCCCCccccCC
Confidence 999999999999999999998875211110001110010 0101110000 0000000 000011234556799999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHH
Q 018278 177 PRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWV 255 (358)
Q Consensus 177 ~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (358)
|+||++|++++++|++ +||||||+|++++++.++|+++.+..++ .++++|.+.... ... ...++
T Consensus 150 ~~Vr~~l~d~~~~~~e-~gvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-------~~~------~~~~~- 214 (354)
T d1g94a2 150 NYVQNTIAAYINDLQA-IGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGG-------EAV------GASEY- 214 (354)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCEEEEETGGGSCHHHHHHHHHTSCSCCEEEECCCCSSC-------CSS------CGGGG-
T ss_pred HHHHHHHHHHHHHhhh-hccchhhccchhhCCHHHHHHHHhhhcccceeEEEEeccCc-------ccc------cchhh-
Confidence 9999999999999997 9999999999999999999999998877 789999986522 110 00011
Q ss_pred HhcCCceeeeccchHHHHHHHHc-CchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCC-----CcchHHHHH
Q 018278 256 QAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPF-----PSDKVMLGY 329 (358)
Q Consensus 256 ~~~~~~~~~~df~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~-----~~~~~~~a~ 329 (358)
.....+++|.+...+...+. ++...+..... ......+.++++|++|||++|+.+..+. ..++.++|+
T Consensus 215 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~~lA~ 288 (354)
T d1g94a2 215 ---LSTGLVTEFKYSTELGNTFRNGSLAWLSNFGE---GWGFMPSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLAN 288 (354)
T ss_dssp ---GGGSEEECHHHHHHHHHHHHHSCGGGGGGTTG---GGTCCCGGGEEECSCCTTGGGTSSCCTTSCCGGGTHHHHHHH
T ss_pred ---cCCCcccchhhcchhhhHhhhhhHHHHHHHhh---hhccCCccceEEeecccccccccccCcccccccchHHHHHHH
Confidence 12345678888777776663 44444433211 1222346788999999999998775542 345678999
Q ss_pred HHHHcCC-CeeeeecCccccCCCC
Q 018278 330 AYILTHP-GTPCIVISVTYPLFHP 352 (358)
Q Consensus 330 a~l~~~p-G~P~IyyGdE~G~~~~ 352 (358)
|+||++| |+|+||||+|++....
T Consensus 289 afil~~p~G~P~iyyG~ef~~~~~ 312 (354)
T d1g94a2 289 VFMLAYPYGYPKVMSSYDFHGDTD 312 (354)
T ss_dssp HHHHHSCSSEEEEEECBCCTTCTT
T ss_pred HHHHHcCCCEEEEEeecCcCCCCc
Confidence 9999998 9999999999986543
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=100.00 E-value=1.2e-56 Score=430.33 Aligned_cols=318 Identities=16% Similarity=0.219 Sum_probs=209.8
Q ss_pred hcCCCCCCceEEEeeecCCCCC----------------------------------------CCCchHHHHhhhhhHHH-
Q 018278 16 IFLPFTSPALLFQGFNWESSNK----------------------------------------AGGWYNSLKNSIPDLSN- 54 (358)
Q Consensus 16 ~~~~~~~~~v~~q~F~~~~~~~----------------------------------------~~G~~~gl~~~L~yl~~- 54 (358)
.+|+|++++||||+|. |++.+ .||||+||+++|||||+
T Consensus 3 ~~p~W~~~~viY~i~~-drF~dgd~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl~Gi~~kLdYl~~~ 81 (432)
T d1ji1a3 3 KTPDWLKNGVMYQIFP-DRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKLGYIKKT 81 (432)
T ss_dssp CCCHHHHHCCEEEECG-GGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHTHHHHHTT
T ss_pred CCCccccCCeEEEEec-cccCCCCCccccccccccccCCccccccccccccccccccccccccCcCHHHHHHHhhHHHhh
Confidence 4799999999999996 54432 16999999999999987
Q ss_pred cCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcC----CEEEEEeecccccccCCCCCcceeec
Q 018278 55 AGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKG----IKCLADMVINHRTAERKDGRGIYCIF 130 (358)
Q Consensus 55 LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~G----i~VilD~V~NH~~~~~~~~~~~~~~~ 130 (358)
||||+|||+||++++++|||++.||++|| |+|||++||++||++||++| |+||+|+|+||+|.+|+..... ..+
T Consensus 82 LGv~~I~L~Pi~~~~~~~GY~~~d~~~id-~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~V~NH~s~~~~~~~~~-~~~ 159 (432)
T d1ji1a3 82 LGANILYLNPIFKAPTNHKYDTQDYMAVD-PAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKY-NNF 159 (432)
T ss_dssp TCCCEEEESCCEECSSSSCCSCSEEEEEC-TTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTCTT-CCS
T ss_pred cCCCEEEeCCCCcCCCCCCcccccccccC-cccCCHHHHHHHHHHHHHhhhhcceeEeccccccccCCCchhHhhc-cCc
Confidence 99999999999999999999999999999 99999999999999999987 7899999999999998732210 000
Q ss_pred cC--CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHH----HHHHHH-HhcCCCeEee
Q 018278 131 EG--GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLN--PRVQKELSD----WMNWLK-TEIGFDGWRF 201 (358)
Q Consensus 131 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n--~~v~~~l~~----~~~~w~-~~~gvDGfR~ 201 (358)
.. ........|... ..+......+....++..+|++|+.| ++||+++.+ ++++|+ +++||||||+
T Consensus 160 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ln~~n~~~~v~~~~~~~~~~~~~~wl~~~~gvDGfR~ 233 (432)
T d1ji1a3 160 SSQGAYESQSSPWYNY------YTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRL 233 (432)
T ss_dssp SSCCTTTCTTCTTGGG------BCEEETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHHHHHSTTTCCCEEEE
T ss_pred cccccccccccccccc------ccccccccccccccccCccCccccCCCcHHHHHHHHHHHHHHHHHhhhhhcCccceee
Confidence 00 000001111111 11111222334455667889999988 456766665 566555 5689999999
Q ss_pred ccCCCCCH-----------HHHHHH---HHhcCC-CeEEEeccCCCCCC-CC---CCCCCCCCCchhhHHHHHHhcCCce
Q 018278 202 DFVKGYAP-----------SITKVY---MENTSP-DFAVGEKWDSLSYG-PD---GKPDANQDGHRGALKDWVQAAGGAV 262 (358)
Q Consensus 202 D~a~~i~~-----------~~~~~~---~~~~~p-~~~~gE~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (358)
|++++++. ++|+++ ++..+| ++++||.+...... .. .....+.+.+...+..++.......
T Consensus 234 D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (432)
T d1ji1a3 234 DAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQPVSEWITGKDYQN 313 (432)
T ss_dssp TTGGGCBSTTCCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCGGGTTTSSSCSEEBCTTTTHHHHHHHHTSBCTTS
T ss_pred eceeeeccCCCCcccccchhHHHHHHHHHHhhCCCeEEEeeeccCccceeccccccchhhhhhhhhHHHHHHhhcchhhc
Confidence 99999864 588776 445567 88999998652210 00 0000111111222222222111100
Q ss_pred eeeccchHHHHHHHHcCchhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeee
Q 018278 263 AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIV 342 (358)
Q Consensus 263 ~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~Iy 342 (358)
........ .+... +..... ......+...++|++|||+.|+.+.++....+.++|++++||+||+||||
T Consensus 314 ~~~~~~~~-~~~~~-------~~~~~~---~~~~~~~~~~~~f~~nHD~~R~~s~~~~~~~~~~~a~~~llt~pG~P~iy 382 (432)
T d1ji1a3 314 NSASISTT-QFDSW-------LRGTRA---NYPTNVQQSMMNFLSNHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIY 382 (432)
T ss_dssp CBCCCCHH-HHHHH-------HHHHHT---TSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSEEEEE
T ss_pred ccccccHH-HHHHH-------HHHhHh---hcccccccccccccccCCccchhhhcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 00000000 00000 000000 00011124568999999999999988877778999999999999999999
Q ss_pred cCccccCCCCC
Q 018278 343 ISVTYPLFHPL 353 (358)
Q Consensus 343 yGdE~G~~~~~ 353 (358)
||||+|+.+..
T Consensus 383 yGdE~G~~g~~ 393 (432)
T d1ji1a3 383 YGDEYGMQGGA 393 (432)
T ss_dssp TTGGGTCCCCS
T ss_pred cCHhhCCCCCC
Confidence 99999987543
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=6.1e-56 Score=430.79 Aligned_cols=316 Identities=18% Similarity=0.245 Sum_probs=216.8
Q ss_pred CCCCCCceEEEeeec---CCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCCCCCCCHHHH
Q 018278 18 LPFTSPALLFQGFNW---ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADL 93 (358)
Q Consensus 18 ~~~~~~~v~~q~F~~---~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~ 93 (358)
+.|++++||||+|.- |++++++|||+||++||||||+||||+||||||+++++ +|||++.||++|| |+|||.+||
T Consensus 3 ~~W~~~~viYei~~~~F~d~~~~~~Gd~~gi~~kLdYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd-~~~Gt~~df 81 (479)
T d1uoka2 3 KQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIM-NEFGTMEDW 81 (479)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEEC-GGGCCHHHH
T ss_pred chhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCcCccccCCcC-cccCCHHHH
Confidence 679999999999852 45667789999999999999999999999999999864 8999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEEeecccccccCCC----------CCcceeeccCCCC-CCCCCCCCCcccCCCCccCCCCCCCCC
Q 018278 94 KSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTS-DDRLDWGPSFICRGDKEYSDGQGNDDT 162 (358)
Q Consensus 94 ~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (358)
++||++||++||+||||+|+||+|.+|+. ....++.|.++.. ..+..|...+. .....+.+..+.+..
T Consensus 82 ~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 160 (479)
T d1uoka2 82 DELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFS-GSAWQYDEMTDEYYL 160 (479)
T ss_dssp HHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTS-SBSEEEETTTTEEEE
T ss_pred HHHHHHHHHCCCEEEecccccccccccchhhhhhhccCCccccceeccccccCcCcCCccccCC-CCccccccccCccee
Confidence 99999999999999999999999998741 2223333433222 12222222211 111223334445556
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH----------------------------HHHHH
Q 018278 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----------------------------SITKV 214 (358)
Q Consensus 163 ~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~----------------------------~~~~~ 214 (358)
..+...++|||++||+||++|++++++|++ +||||||+|+|+++.. .++++
T Consensus 161 ~~~~~~~~dln~~~~~v~~~i~~~~~~W~e-~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
T d1uoka2 161 HLFSKKQPDLNWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHE 239 (479)
T ss_dssp CSSCTTSCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHHH
T ss_pred cccCCCccccccCCHHHHHHHHHHHHHHHH-cCCCCcccccceeeeccccCcccccccccccccchhhccChhHHHHHHH
Confidence 677889999999999999999999999987 9999999999998842 23444
Q ss_pred HHH---hcCCCeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhc-CCceeeeccchHHHHHHHH------cCchhhh
Q 018278 215 YME---NTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA-GGAVAAFDFTTKGILQAAV------QGELWRL 284 (358)
Q Consensus 215 ~~~---~~~p~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~~~l~~~~------~~~~~~~ 284 (358)
+.+ ...+.++++|.+... ......|.... ......|+|.......... ......+
T Consensus 240 ~~~~~~~~~~~~~~~e~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (479)
T d1uoka2 240 MNEEVLSHYDIMTVGEMPGVT---------------TEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTL 304 (479)
T ss_dssp HHHHTGGGSCCEEEEECTTCC---------------HHHHHHHHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHHH
T ss_pred HHHHHHhcCccceeecccCCc---------------hHhhhhhccCCCcccccccCcccchhhhhccCcccccchhhhHH
Confidence 422 234477899987431 33444444322 2233344443321100000 0000000
Q ss_pred hhcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 285 KDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
........ ...........|++|||+.|..+.++.. .++.++|++++||+||+||||||||+|+.+.
T Consensus 305 ~~~~~~~~-~~~~~~~~~~~~~~nhd~~~~~~~~~~~~~~~~~~~~~~~~~l~t~pGiP~IyyGdEiG~~~~ 375 (479)
T d1uoka2 305 KENLTKWQ-KALEHTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNV 375 (479)
T ss_dssp HHHHHHHH-HHTSSSSCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCC
T ss_pred hhhHHHHh-hhcccccccceecccccccccccccCccHHHHHHHHHHHHHHHHhCCCCcccccccccCCcCC
Confidence 00000000 0000123346799999999887765422 3467889999999999999999999999864
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=100.00 E-value=1.3e-54 Score=408.00 Aligned_cols=315 Identities=25% Similarity=0.427 Sum_probs=223.6
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCCCccccC---------CCCCCCCCCH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLY---------DLDASKYGSQ 90 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~--~~gY~~~d~~---------~id~~~~Gt~ 90 (358)
++.||+|+|+|+++++ ||||++|++||||||+||||+|||+||+++++ ++||++.||| +|| |+|||.
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd-~~~Gt~ 80 (390)
T d1ud2a2 3 LNGTMMQYYEWHLEND-GQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVR-TKYGTK 80 (390)
T ss_dssp CCCCEEECCCTTCCCS-SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSS-CSSCCH
T ss_pred CCCeEEEeeccCCCCC-CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcC-CCCCCH
Confidence 5789999999999998 68999999999999999999999999998754 8999999996 789 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccCCC---------CCcceeeccCC-------------CCCC----CCCCCCC
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGG-------------TSDD----RLDWGPS 144 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~---------~~~~~~~~~~~-------------~~~~----~~~~~~~ 144 (358)
+|||+||++||++||+||+|+|+||++..|+. +...|..+... .... ...|...
T Consensus 81 ~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (390)
T d1ud2a2 81 AQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHF 160 (390)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHhcCCceEEEEccccccCcccchhhhhcccCcccccccccccccccccccccCCccCCcCCCCccccccc
Confidence 99999999999999999999999999988741 11111111110 0000 0000000
Q ss_pred c---c----------cCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHH
Q 018278 145 F---I----------CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSI 211 (358)
Q Consensus 145 ~---~----------~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~ 211 (358)
. . ......+...............+++++..++.+++++.+++..|++.+|+||||+|+++++..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~~~~ 240 (390)
T d1ud2a2 161 NGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY 240 (390)
T ss_dssp EEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred CCCCccccCCCCceeeccCCccccccccccccccccccccccccCHHHHHHHHHhhhhccceeccccccccchhhcChHH
Confidence 0 0 00000000111122233445678899999999999999999999998999999999999999999
Q ss_pred HHHHHH----hcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc-Cchhhhh
Q 018278 212 TKVYME----NTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLK 285 (358)
Q Consensus 212 ~~~~~~----~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~-~~~~~~~ 285 (358)
+.++.+ ...+ .+.++|.+... ......+..........+++.+...+..+.. .....+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~e~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (390)
T d1ud2a2 241 TSDWVRHQRNEADQDLFVVGEYWKDD---------------VGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMR 305 (390)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCSC---------------HHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGG
T ss_pred HHHHHHHHhhhhhhheeeeccccCCc---------------cccccccccccccccchhhHHHHHHHHHHhcccchHHHH
Confidence 888754 3445 77899988541 3334444444455566677777766666542 3333333
Q ss_pred hcCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCc--chHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 286 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS--DKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~--~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
..... ......+.++++|++|||++|..++..... .+.++|+++++|+||+|+||||||+|+.+..+.
T Consensus 306 ~~~~~--~~~~~~~~~~v~fl~nHD~~r~~~~~~~~~~~~~~~~~~~il~~~pG~P~iy~GdE~G~~~~~~~ 375 (390)
T d1ud2a2 306 NILRG--SLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNIS 375 (390)
T ss_dssp GTTTT--CHHHHCGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBC
T ss_pred HHHhh--ccccCCccceEEEccCCccccccccccCcCHHHHHHHHHHHHHhCCCCeEEEchhhcCCCCCCCc
Confidence 33221 122335678899999999999988765433 334455556678899999999999999876543
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=100.00 E-value=6.2e-55 Score=411.84 Aligned_cols=297 Identities=21% Similarity=0.260 Sum_probs=210.3
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhh-hHHHcCCCEEEeCCCCCCCC------CCCCCccccCCCCCCCCCCHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPSQSVA------PQGYMPGRLYDLDASKYGSQADLK 94 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~-yl~~LGv~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~~Gt~~d~~ 94 (358)
..+||+|.|.|. |++|+++|+ |||+||||+||||||++++. ++||++.|| +|+ ++|||++||+
T Consensus 9 ~~~~i~~~f~W~--------~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY-~id-~~~Gt~~df~ 78 (378)
T d1jaea2 9 GRNSIVHLFEWK--------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IIN-TRSGDESAFT 78 (378)
T ss_dssp TCEEEEEETTCC--------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCS-CSE-ETTEEHHHHH
T ss_pred CCceEEEeccCc--------HHHHHHHHHHHHHHhCCCEEEeCcccccCCCCCCCCccccCCccc-eeC-CCCCCHHHHH
Confidence 357999999994 999999998 89999999999999998752 478999995 799 9999999999
Q ss_pred HHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCC-CCCCCCCCCCCCCCCCCC
Q 018278 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD-GQGNDDTGEDFQPAPDID 173 (358)
Q Consensus 95 ~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dln 173 (358)
+||++||++||+||+|+|+||++..+..... ...+.......+................+ ........+.+..+||||
T Consensus 79 ~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln 157 (378)
T d1jaea2 79 DMTRRCNDAGVRIYVDAVINHMTGMNGVGTS-GSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLN 157 (378)
T ss_dssp HHHHHHHHTTCEEEEEECCSBCCSSCEEBTT-SCEEBTTTTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTBCBBC
T ss_pred HHHHHHHhcCceeeeeecccccccccCCCcc-ccccCCCcccCcCCCCCccccCCCCCcCCCCCccccccccccccCccc
Confidence 9999999999999999999999988742111 00000000000000000000000000000 001112234557899999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcC------------CCeEEEeccCCCCCCCCCCCC
Q 018278 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS------------PDFAVGEKWDSLSYGPDGKPD 241 (358)
Q Consensus 174 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~------------p~~~~gE~~~~~~~~~~~~~~ 241 (358)
++||+||++|++++++|++ +||||||+|+|++++.++++++....+ ..+++||++.... .
T Consensus 158 ~~np~V~~~l~~~~~~w~e-~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~-------~ 229 (378)
T d1jaea2 158 QGSDYVRGVLIDYMNHMID-LGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGG-------E 229 (378)
T ss_dssp TTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSS-------S
T ss_pred cCCHHHHHHHHHHHHHHHH-hCCCceeeeeecccCHHHHHHHHHhhhhhccccccccccccceeeehhcccc-------c
Confidence 9999999999999999996 999999999999999999999866532 2579999986521 0
Q ss_pred CCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC--chhhhhhcCCCCCCccCCCCCceeecccCCCCCcCcCCCC
Q 018278 242 ANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG--ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWP 319 (358)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~ 319 (358)
. ...+ .......+++|.+...+..++.+ .+..+..... ......+.++++|++|||++|+.....
T Consensus 230 ~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~v~Fl~NHD~~R~~~~~~ 296 (378)
T d1jaea2 230 A--------ISKN--EYTGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGP---EWGLLEGLDAVVFVDNHDNQRTGGSQI 296 (378)
T ss_dssp S--------CCGG--GTTTSSEEECHHHHHHHHHHHTTTSCGGGGGGCSG---GGTCCCGGGEEECSCCTTHHHHSCTTC
T ss_pred c--------ccch--hccccchhcchhhhhhhhhhhccCccHHHHHHHhh---hhccCCccceeEeeccCCCCCcCCCcc
Confidence 0 0011 11345677899988888887743 3334433221 111224577899999999999754321
Q ss_pred ---CCcchHHHHHHHHHcCC-CeeeeecCccccCC
Q 018278 320 ---FPSDKVMLGYAYILTHP-GTPCIVISVTYPLF 350 (358)
Q Consensus 320 ---~~~~~~~~a~a~l~~~p-G~P~IyyGdE~G~~ 350 (358)
.+.++.++|+|+|||+| |+|+||+|.|+...
T Consensus 297 ~~~~~~~~~~lA~af~lt~p~G~P~iy~g~~~~~~ 331 (378)
T d1jaea2 297 LTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFTDN 331 (378)
T ss_dssp CCTTSHHHHHHHHHHHHHSCSSEEEEEECBCCSST
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEEeccccCCC
Confidence 24577899999999999 99999999998754
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=1.2e-55 Score=422.32 Aligned_cols=301 Identities=16% Similarity=0.131 Sum_probs=200.4
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~ 98 (358)
.++.||||++. .+..+ .|||+||+++|||||+||||+||||||++.+ .+|||+|.||++|| |+|||++||++||+
T Consensus 14 ~~~~viYe~~~-~~f~~-~Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vd-p~~G~~~d~~~lv~ 90 (420)
T d2bhua3 14 LADCVFYEVHV-GTFTP-EGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPY-APYGRPEDLMALVD 90 (420)
T ss_dssp GGGCCEEEECH-HHHSS-SCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEEC-GGGCCHHHHHHHHH
T ss_pred ccccEEEEEeh-hhcCC-CCCHHHHHHhHHHHHHcCCCEEEeCCCCcCCCCCCCCCCcccCCCcC-cccCCHHHHHHHHH
Confidence 45789999875 44444 5999999999999999999999999998754 57999999999999 99999999999999
Q ss_pred HHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 018278 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (358)
Q Consensus 99 ~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~ 178 (358)
+||++||+||+|+|+||++.+|++... +. + ..|... ......+|||+.||+
T Consensus 91 ~aH~~gi~VilD~V~NH~~~~~~~~~~----~~---~---~~~~~~-------------------~~~~~~~dlN~~np~ 141 (420)
T d2bhua3 91 AAHRLGLGVFLDVVYNHFGPSGNYLSS----YA---P---SYFTDR-------------------FSSAWGMGLDYAEPH 141 (420)
T ss_dssp HHHHTTCEEEEEECCSCCCSSSCCHHH----HC---G---GGEEEE-------------------EECSSSEEECTTSHH
T ss_pred HHHhccccccccccccccCCCCccccc----cc---c---cccccc-------------------ccccccccccccChH
Confidence 999999999999999999998862110 00 0 000000 001124679999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeeccCCCCCH----HHHHHH---HHhcCC-CeEEEeccCCCCCC---CCCCCCCCCCCc
Q 018278 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITKVY---MENTSP-DFAVGEKWDSLSYG---PDGKPDANQDGH 247 (358)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~----~~~~~~---~~~~~p-~~~~gE~~~~~~~~---~~~~~~~~~~~~ 247 (358)
|+++|++++++|++++||||||+|+|++++. .+++++ +++..| .+++||.|...+-. ......++ +.+
T Consensus 142 v~~~~~~~~~~Wl~~~GVDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~~~-~~~ 220 (420)
T d2bhua3 142 MRRYVTGNARMWLRDYHFDGLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWT-DDF 220 (420)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCCSEEEC-THH
T ss_pred HHHHHHHHhheeeecccccEEEEeeeeeeccccccccHHHHHHHHHhhcCCceeeecccCCchhhhcccccccccc-ccc
Confidence 9999999999999889999999999999864 466655 556677 88999998652100 00001111 112
Q ss_pred hhhHHHHHHhcCCceeeeccchHHHHHHHHc-CchhhhhhcCCC------CCCccCCCCCceeecccCCCCC-------c
Q 018278 248 RGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGK------PPGFIGILPQNAVTFIDNHDTG-------S 313 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~v~f~~nHD~~-------r 313 (358)
...++.+..................+...+. +........... ..........+.++|++|||+. |
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~nHD~~~~~~~~~r 300 (420)
T d2bhua3 221 HHETRVTLTGEQEGYYAGYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGER 300 (420)
T ss_dssp HHHHHHHHHCCCSGGGGGCCCSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCC
T ss_pred chhhhhcccccccccccccchhhHHHHHHHhhccccccchhhhhchhhhhcccccccchhheeeeecccccccccccccc
Confidence 2333333332222111111112222222221 100000000000 0000111234568999999972 2
Q ss_pred CcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 314 TQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 314 ~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
.........++.++|++++||+||+|+||||||+|++++.+
T Consensus 301 ~~~~~~~~~~~~k~a~~~llt~pG~P~iy~GdEig~~~~~~ 341 (420)
T d2bhua3 301 LHQSDGVTLHEYRGAAALLLTLPMTPLLFQGQEWAASTPFQ 341 (420)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHSSSEEEEETTGGGTCSSCCC
T ss_pred cccchhhhHHHHHHHHHHHHhCCCCCEEeCChhhCCCCCcc
Confidence 22233345567899999999999999999999999998764
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=100.00 E-value=3.6e-55 Score=431.45 Aligned_cols=311 Identities=19% Similarity=0.218 Sum_probs=222.2
Q ss_pred hcCCCCC--CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC---CCCCCCccccCCCCCCCCCCH
Q 018278 16 IFLPFTS--PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQ 90 (358)
Q Consensus 16 ~~~~~~~--~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~ 90 (358)
..|.|.+ ..+.|+.+. |.. ||||+||++||||||+||||+||||||++++ ++|||+|.||++|| |+|||+
T Consensus 88 ~~~~w~~~~~~~~~~~y~-~~f---gGDl~Gi~~kLdYLk~LGVt~I~L~Pi~~~p~~~sd~GY~v~dy~~Vd-p~lGt~ 162 (554)
T d1g5aa2 88 NNPDWILSNKQVGGVCYV-DLF---AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVN-PALGTI 162 (554)
T ss_dssp TCGGGGGCTTCCEEEECH-HHH---HSSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBC-TTTCCH
T ss_pred hCCccccCcCceeEEEec-ccc---CcCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCCCcCcccCCCCC-cccCCH
Confidence 3577875 457788874 433 6999999999999999999999999999985 57999999999999 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccCCC----------CCcceeeccCCCCCC--CCCCCCCccc--CCCCccCCC
Q 018278 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDD--RLDWGPSFIC--RGDKEYSDG 156 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 156 (358)
+||++||++||++||+||+|+|+||||.+|++ ....|+.|.++.... ...+...+.. .....+ ..
T Consensus 163 edl~~Lv~~aH~rGI~VilD~V~NHts~~h~w~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 241 (554)
T d1g5aa2 163 GDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQ-LE 241 (554)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEE-CT
T ss_pred HHHHHHHHHHHHCCCEEEEEECcCCCCCCccchhhhhccCCccccceEEcCCCCCCccccCCCcccCCCCCCcceee-cC
Confidence 99999999999999999999999999998852 112233333321100 0000000000 000111 12
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC-------------HHHHHHH---HHhcC
Q 018278 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVY---MENTS 220 (358)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~---~~~~~ 220 (358)
.+.+....+...++|||++||+|+++|++++++|++ +||||||+|+++++. .++++.+ ++...
T Consensus 242 ~~~~~~~~f~~~~~dln~~np~V~~~~~~~~~~w~~-~gvDGfRlDa~~~~~~~~~~~~~n~p~~~~~~~~~~~~~~~~~ 320 (554)
T d1g5aa2 242 DGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLAN-LGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAA 320 (554)
T ss_dssp TSCEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCSEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCceeecccCCcccccccCCHHHHHHHHhhhhhhhh-ccccccccccchhhccccccccccCchhhHHHHHHHHHHhhhC
Confidence 234556778889999999999999999999999997 999999999999984 3466665 55677
Q ss_pred C-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHc-CchhhhhhcCCCCCCccCCC
Q 018278 221 P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGIL 298 (358)
Q Consensus 221 p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 298 (358)
| ++++||++.. .+.+.+|++. ......+++.+...+..+.. ++...+.+......... .
T Consensus 321 p~~~l~aE~~~~----------------~~~~~~y~g~-~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~l~~~~~~~--~ 381 (554)
T d1g5aa2 321 PAVFFKSEAIVH----------------PDQVVQYIGQ-DECQIGYNPLQMALLWNTLATREVNLLHQALTYRHNLP--E 381 (554)
T ss_dssp TTCEEEECCCSC----------------HHHHGGGBST-TSBSEEECHHHHHHHHHHHHHCCCHHHHHHHHHSCCCC--T
T ss_pred CCceeeccccCC----------------HHHHHHHhCC-CccccccccccchhhhhhcccccHHHHHHHHHhCcccC--C
Confidence 8 8899999854 5666677653 45677888888777666552 33333333322212211 2
Q ss_pred CCceeecccCCCCCcC-----------------------------cCCC-------------------------------
Q 018278 299 PQNAVTFIDNHDTGST-----------------------------QRLW------------------------------- 318 (358)
Q Consensus 299 ~~~~v~f~~nHD~~r~-----------------------------~~~~------------------------------- 318 (358)
+...++|++|||.-.. ....
T Consensus 382 ~~~~~nfl~~HD~ig~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~n~~~~d~~~~~~~~~~~~~~~~~ 461 (554)
T d1g5aa2 382 HTAWVNYVRSHDDIGWTFADEDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDD 461 (554)
T ss_dssp TCEEEEESCCSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEECCCTTTCCCEEECCHHHHHTGGGTC
T ss_pred CCeEEeehhcccccccccchhhhhhhcccchHHHHHHhhhcccccccccccCcchhccccccccccccchhhccccccch
Confidence 4567899999995110 0000
Q ss_pred CCCcchHHHHHHHHHcCCCeeeeecCccccCCCC
Q 018278 319 PFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHP 352 (358)
Q Consensus 319 ~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~ 352 (358)
....+|.++|++++||+||||+||||||+|+.++
T Consensus 462 ~~~~~r~~la~alllt~pGiP~IYyGdEiG~~nd 495 (554)
T d1g5aa2 462 PHAVDRIKLLYSIALSTGGLPLIYLGDEVGTLND 495 (554)
T ss_dssp TTHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCChhhheechhhCCCCC
Confidence 0011367889999999999999999999998764
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=9.4e-53 Score=399.13 Aligned_cols=302 Identities=17% Similarity=0.175 Sum_probs=198.4
Q ss_pred CCCC--CceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHH
Q 018278 19 PFTS--PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLK 94 (358)
Q Consensus 19 ~~~~--~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~ 94 (358)
.|.+ +.||||++. .+..+ .|||+||+++|||||+||||+|||+||++++ .+|||+|.||++|| |+|||++|||
T Consensus 5 ~~~~~~~~viYe~~v-~~f~~-~Gd~~gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd-~~~Gt~~dlk 81 (400)
T d1eh9a3 5 TFLKKEDLIIYEIHV-GTFTP-EGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQ-NSYGGPEGFR 81 (400)
T ss_dssp CSCCSSSCCEEEECT-TTSSS-SCSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBC-STTCCHHHHH
T ss_pred CcCCCcCeEEEEEeh-hhhCC-CCCHHHHHHHhHHHHHcCCCEEEeCCcCcCCCCCCCCCCCCCCCCcC-cccCCHHHHH
Confidence 4544 689999997 66666 4999999999999999999999999999876 47999999999999 9999999999
Q ss_pred HHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCC
Q 018278 95 SLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDH 174 (358)
Q Consensus 95 ~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 174 (358)
+||++||++||+||+|+|+||+|.+|++... .+ .|....... ........+++
T Consensus 82 ~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~-----~~-------~~~~~~~~~---------------~~~~~~~~~~~ 134 (400)
T d1eh9a3 82 KLVDEAHKKGLGVILDVVYNHVGPEGNYMVK-----LG-------PYFSQKYKT---------------PWGLTFNFDDA 134 (400)
T ss_dssp HHHHHHHHTTCEEEEEECCSCCCSSSCCHHH-----HS-------CCSCSSCCC---------------SSSCCCCSSST
T ss_pred HHHHHHHhcCCceeeecccccccCCCcchhh-----hc-------ccccccccc---------------ccccccccccc
Confidence 9999999999999999999999998863211 00 000000000 00011122778
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC----CHHHHHHHHH---hcCCCeEEEeccCCCCCCC--------CCC
Q 018278 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY----APSITKVYME---NTSPDFAVGEKWDSLSYGP--------DGK 239 (358)
Q Consensus 175 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i----~~~~~~~~~~---~~~p~~~~gE~~~~~~~~~--------~~~ 239 (358)
+||+|+++|++++++|++++||||||+|+|+++ +.++++++.+ +.. .++++|.....+... ...
T Consensus 135 ~np~v~~~l~d~~~~Wl~~~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (400)
T d1eh9a3 135 ESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPKHILEEIADVVHKYN-RIVIAESDLNDPRVVNPKEKCGYNID 213 (400)
T ss_dssp THHHHHHHHHHHHHHHHHHSCCCCEEETTGGGCCCCSSSCHHHHHHHHHHHTT-CCEEECCCSCCTTTTSCGGGTCCCCS
T ss_pred cccHHHHHHHHHHHHHHhhcccceEEeechhhhcchhhhhhHHHHHHHHhhhh-hhhhhhccccCccccchhhhccceec
Confidence 999999999999999998899999999999998 4456666533 323 345666544322110 001
Q ss_pred CCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcC-c-----hhhhhh-cCCCCCCccCCCCCceeecccCCCCC
Q 018278 240 PDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-E-----LWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTG 312 (358)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~-~-----~~~~~~-~~~~~~~~~~~~~~~~v~f~~nHD~~ 312 (358)
..++ +.+...+..++... ......++.....+...+.. . ...... .... ......+.+.++|++|||+.
T Consensus 214 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~~nHD~~ 289 (400)
T d1eh9a3 214 AQWV-DDFHHSIHAYLTGE-RQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGE--PVGELDGCNFVVYIQNHDQV 289 (400)
T ss_dssp EEEC-HHHHHHHHHHHSCC-CSGGGGGCCSHHHHHHHHHSSCSCSSEEETTTTEEECC--CCCSCCGGGEECCSCCHHHH
T ss_pred cccc-cccchhhHhhhccc-ccchhhhhhhhHHHHHHhhhhhccchhHHHHHHHhccc--chhhhcccchhhhhhhcccc
Confidence 1111 11233344444322 12222333332222222211 0 000000 0000 01112345678999999975
Q ss_pred cCcCCCC-----CCcchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 313 STQRLWP-----FPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 313 r~~~~~~-----~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
+...... ...++.++|++++||+||+|+||||||+|+.++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~a~a~~l~~pGiP~iy~G~E~G~~~~~~~ 337 (400)
T d1eh9a3 290 GNRGKGERIIKLVDRESYKIAAALYLLSPYIPMIFMGEEYGEENPFYF 337 (400)
T ss_dssp HTTTTCCCGGGGSCHHHHHHHHHHHHSSSSCCEEESSGGGTCCCCCCC
T ss_pred ccccchhhhHHHhhhhHHHHHHHHHHhCCCCCEEECChhhCCCCCCCc
Confidence 4322111 134578899999999999999999999999887654
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=6.7e-53 Score=401.06 Aligned_cols=298 Identities=19% Similarity=0.271 Sum_probs=205.9
Q ss_pred CCCceEEEeeecCCCCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCCC--------CCCCCccccCCCCCCCCCCHH
Q 018278 21 TSPALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--------PQGYMPGRLYDLDASKYGSQA 91 (358)
Q Consensus 21 ~~~~v~~q~F~~~~~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~~--------~~gY~~~d~~~id~~~~Gt~~ 91 (358)
...+||+|.|+|. |++|++++ +||++||||+||||||+++.. +|||+|.| |+|+ |+|||++
T Consensus 8 ~g~~~i~~~f~w~--------~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~d-Y~v~-~~~Gt~~ 77 (403)
T d1hx0a2 8 SGRTSIVHLFEWR--------WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVS-YKLC-TRSGNEN 77 (403)
T ss_dssp TTCCEEEEETTCC--------HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSC-SCSC-BTTBCHH
T ss_pred CCCeeEEEeecCc--------HHHHHHHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCC-CccC-CCCCCHH
Confidence 3458999999994 99999876 799999999999999998632 47999999 6899 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccccCCCCCcc-----eeeccC----CCCCCCCCCCCCcccCCCCccCCCC-CCCC
Q 018278 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGI-----YCIFEG----GTSDDRLDWGPSFICRGDKEYSDGQ-GNDD 161 (358)
Q Consensus 92 d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 161 (358)
|||+||++||++||+||||+|+||++.+++..... +..... ..+.....+.............+.. ....
T Consensus 78 dfk~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (403)
T d1hx0a2 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQV 157 (403)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEEecccccccccccccccccCcccccccccCCCCCCCCccCCCCcccCCCCCccccCCccce
Confidence 99999999999999999999999999987632110 000000 0000000000000000000000000 0000
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHHHHhcC----------C-CeEEEeccC
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS----------P-DFAVGEKWD 230 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~----------p-~~~~gE~~~ 230 (358)
..+.+..+||||++||+||+++++++++|++ +||||||+|++++++.++++++....+ + .++++|++.
T Consensus 158 ~~~~l~~~pDLn~~np~Vr~~~~~~l~~~~~-~GvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~ 236 (403)
T d1hx0a2 158 RDCQLVGLLDLALEKDYVRSMIADYLNKLID-IGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVID 236 (403)
T ss_dssp HHSBGGGEEEBCTTSHHHHHHHHHHHHHHHH-HTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCC
T ss_pred eeccccccCcccCCCHHHHHHHHHHHHHHHH-cCCCccccccccccCHHHHHHHHHHHHhhCcccccccCCceEEEEEec
Confidence 1123456899999999999999999999997 999999999999999999999975421 2 579999886
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCc----hhhhhhcCCCCCCccCCCCCceeecc
Q 018278 231 SLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE----LWRLKDSNGKPPGFIGILPQNAVTFI 306 (358)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~f~ 306 (358)
... +....+. ......+++|.+...+...+... ...+.. .. .......+.++++|+
T Consensus 237 ~~~---------------~~~~~~~--~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~Fl 296 (403)
T d1hx0a2 237 LGG---------------EAIKSSE--YFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKN-WG--EGWGFMPSDRALVFV 296 (403)
T ss_dssp CSS---------------SSSCGGG--GTTTSEEECHHHHHHHHHHHTTCTTCCGGGGGG-TT--GGGTCCCGGGEEECS
T ss_pred cCc---------------chhhccc--ccCCCccccccccchhhHHHhhccchhHHHHHH-hc--cccccCCccceEEec
Confidence 421 0111111 13356778999888888777432 222221 11 112223467889999
Q ss_pred cCCCCCcCcCCCCC------CcchHHHHHHHHHcCC-CeeeeecCccccC
Q 018278 307 DNHDTGSTQRLWPF------PSDKVMLGYAYILTHP-GTPCIVISVTYPL 349 (358)
Q Consensus 307 ~nHD~~r~~~~~~~------~~~~~~~a~a~l~~~p-G~P~IyyGdE~G~ 349 (358)
+|||++|+.+..+. +.++.++|+++||++| |+|+||||.|.++
T Consensus 297 ~NHD~~R~~~~~~~~~~~~~~~~~~~~a~af~lt~p~G~P~iy~gy~~~~ 346 (403)
T d1hx0a2 297 DNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRWAR 346 (403)
T ss_dssp CCTTGGGTCSSCGGGCCCGGGHHHHHHHHHHHHHSCSSEEEEEECBCCCC
T ss_pred ccCCCcccccCCCccccccccHHHHHHHHHHHHHCCCCccceEeeecccc
Confidence 99999998876542 2356789999999999 9999987776543
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=100.00 E-value=7.3e-51 Score=394.63 Aligned_cols=181 Identities=20% Similarity=0.291 Sum_probs=141.7
Q ss_pred CCCCCceEEEeeec---CCC----CCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--------------CCCCCCcc
Q 018278 19 PFTSPALLFQGFNW---ESS----NKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--------------APQGYMPG 77 (358)
Q Consensus 19 ~~~~~~v~~q~F~~---~~~----~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--------------~~~gY~~~ 77 (358)
.|.++.||||++.. +++ +++.|||+||++||||||+||||+||||||++++ ++|||++.
T Consensus 12 ~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~kLdyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~ 91 (475)
T d1bf2a3 12 RAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTE 91 (475)
T ss_dssp CCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBS
T ss_pred CCCcceEEEEEEhhHhccCCCCCCccccCCHHHHHhhhHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcc
Confidence 46788999999852 222 4557999999999999999999999999999864 25899999
Q ss_pred ccCCCCCCCC-------CCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCC
Q 018278 78 RLYDLDASKY-------GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 150 (358)
Q Consensus 78 d~~~id~~~~-------Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (358)
||++|| |+| ||.+||++||++||++||+||+|+|+||++.+|+... . .+.. ..|.........
T Consensus 92 d~~~vd-p~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVilD~V~NH~~~~~~~~~-------~-~~~~-~~~~~~~~~~~~ 161 (475)
T d1bf2a3 92 NYFSPD-RRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTS-------S-DPTT-ATIYSWRGLDNA 161 (475)
T ss_dssp CSSCBC-GGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSS-------S-CSSC-BBCSSHHHHHHH
T ss_pred cCCCcC-cccccCCCCCCCHHHHHHHHHHHHhcCcEEEEEeccccccCCCcccc-------c-CCCc-CccccccCcccc
Confidence 999999 999 9999999999999999999999999999999886211 1 1110 011100000000
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH
Q 018278 151 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (358)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~ 209 (358)
..+....+.+....+...++|||+.||+|++++++++++|++++||||||+|+++++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~gvDGfR~D~~~~~~~ 220 (475)
T d1bf2a3 162 TYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGN 220 (475)
T ss_dssp HHBCBCTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGB
T ss_pred cccccCCCccccccCCCccCccchhhhHHHHHHHHHHHhhhhhcCCceEEEehHhhhch
Confidence 11222334555566778899999999999999999999999989999999999998853
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.3e-50 Score=375.69 Aligned_cols=299 Identities=15% Similarity=0.123 Sum_probs=199.5
Q ss_pred cCCCCCCceEEEeee----cCCCCCCCCchHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCC
Q 018278 17 FLPFTSPALLFQGFN----WESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGS 89 (358)
Q Consensus 17 ~~~~~~~~v~~q~F~----~~~~~~~~G~~~gl~~~L-~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt 89 (358)
.++|-++-+|||++. -++++++.|||+||++|| |||++||||+|||+||++++ ++|||++.||++|| |+|||
T Consensus 10 ~~~~~~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~~vd-p~~Gt 88 (396)
T d1m7xa3 10 ANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPT-RRFGT 88 (396)
T ss_dssp HHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEEC-GGGSC
T ss_pred CCCCCCCcEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcCcCcCCCcC-cccCC
Confidence 345556668999763 355566679999999996 99999999999999999886 47999999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (358)
++||++||++||++||+||+|+|+||++.+|+..... .. ..+. .+. ............
T Consensus 89 ~~d~~~LV~~aH~~gi~VilD~V~NH~~~~~~~~~~~----~~------~~~~---------~~~---~~~~~~~~~~~~ 146 (396)
T d1m7xa3 89 RDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEF----DG------TNLY---------EHS---DPREGYHQDWNT 146 (396)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSCCCSTTSSTTG----GG------SCSS---------BCC--------------C
T ss_pred HHHHHHHHHHHhhhhhhhhhcccccccCCcccccccc----cC------Cccc---------ccc---CCCCCCCCCCCC
Confidence 9999999999999999999999999999987622110 00 0000 000 000111122345
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC------------------------CHHHHHHH---HHhcCC-
Q 018278 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP- 221 (358)
Q Consensus 170 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~---~~~~~p- 221 (358)
+++|+++|+++.++.+++++|++++||||||+|++++. ..++|+++ ++..+|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (396)
T d1m7xa3 147 LIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSG 226 (396)
T ss_dssp CCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTT
T ss_pred ccccCCCchhHHHHHHHHHHHHHHhCCcceeeechhhhccchhcccccccccccccccccchHHHHHHHHHHHHhhhCCC
Confidence 66899999999999999999999999999999998653 12244443 556677
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCch-hh------hhhcCCCCCCc
Q 018278 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL-WR------LKDSNGKPPGF 294 (358)
Q Consensus 222 ~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~-~~------~~~~~~~~~~~ 294 (358)
.++++|.+....... . ............+++.+...+........ .. +..... ...
T Consensus 227 ~~~~~e~~~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 289 (396)
T d1m7xa3 227 AVTMAEESTDFPGVS----R-----------PQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGIL--YNY 289 (396)
T ss_dssp CEEEECCSSCCTTTT----B-----------CTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGT--TTT
T ss_pred ceEEEeecCCCcccc----c-----------cccccccchhhhhccchhhhhhhhccchhhhhhhhccccchhhh--hhh
Confidence 889999876521100 0 00000112334455555555554442211 10 110000 000
Q ss_pred cCCCCCceeecccCCCCCcCcCCCCCC----cchHHHHHHHHHcCCCeeeeecCccccCCCCCCC
Q 018278 295 IGILPQNAVTFIDNHDTGSTQRLWPFP----SDKVMLGYAYILTHPGTPCIVISVTYPLFHPLNV 355 (358)
Q Consensus 295 ~~~~~~~~v~f~~nHD~~r~~~~~~~~----~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n~ 355 (358)
..........+..+||..|........ .++.++|++++||+||+|+||||||+|+.++.|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~~~ 354 (396)
T d1m7xa3 290 TENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNH 354 (396)
T ss_dssp TSCEEEEECGGGSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCT
T ss_pred hhhccccccccccccCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCccEeecccccCCCCCCCC
Confidence 011111234577888887765544432 2367899999999999999999999999887665
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=3.6e-48 Score=382.31 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=148.5
Q ss_pred CCCCCCceEEEeeec---CCCCCCCCchHH-----------HHhhhhhHHHcCCCEEEeCCCCCCCC-------------
Q 018278 18 LPFTSPALLFQGFNW---ESSNKAGGWYNS-----------LKNSIPDLSNAGITHVWLPPPSQSVA------------- 70 (358)
Q Consensus 18 ~~~~~~~v~~q~F~~---~~~~~~~G~~~g-----------l~~~L~yl~~LGv~~I~l~Pi~~~~~------------- 70 (358)
|.|.++.||||++.. ++++++.|+++| |++|||||++||||+||||||+++++
T Consensus 16 ~~~~~~~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~LdyL~~LGVtaiwL~Pi~~~~~~d~~~~~~~~~~~ 95 (563)
T d2fhfa5 16 KADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQ 95 (563)
T ss_dssp HHHHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGCCCTTS
T ss_pred CCCHHHcEEEEecchhhhccCCCCccccCcChhhccccCcchhhhHHHHHHcCCCEEEeCCcccCCcccccccccccccc
Confidence 447788999999531 777777766666 89999999999999999999987542
Q ss_pred ----------------------------------------------------------CCCCCccccCCCCCCCCCC---
Q 018278 71 ----------------------------------------------------------PQGYMPGRLYDLDASKYGS--- 89 (358)
Q Consensus 71 ----------------------------------------------------------~~gY~~~d~~~id~~~~Gt--- 89 (358)
+|||+|.|||+|+ |+|||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~dy~~i~-p~~Gt~~d 174 (563)
T d2fhfa5 96 PFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPE-GSYATDPE 174 (563)
T ss_dssp BHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEEC-STTSSCCS
T ss_pred ccccccccccccchhhhhhhccccchhhhhhhcccccccchhhhhhcccccccccCcCCCCCChhhccccc-CccCcCcc
Confidence 4699999999999 99999
Q ss_pred ----HHHHHHHHHHH-HHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCC
Q 018278 90 ----QADLKSLIQAF-RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGE 164 (358)
Q Consensus 90 ----~~d~~~Lv~~~-H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (358)
.+|||+||++| |++|||||||+|+||||.+|++...... ....+.....|.. ......
T Consensus 175 ~~~~l~Efk~lV~a~~H~rGIkVIlD~V~NHts~~h~wf~~~~~--~~~~~~~y~~~~~---------------~~~~~~ 237 (563)
T d2fhfa5 175 GTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVL--DKIVPWYYQRLNE---------------TTGSVE 237 (563)
T ss_dssp TTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCH--HHHSTTTSBCBCT---------------TTCCBC
T ss_pred hhhHHHHHHHHHHHHhhccCceeeecCcccccCCCCCchhhccc--CCCCCcceeccCC---------------CCCccc
Confidence 78899999987 9999999999999999999873211000 0000000000000 000111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHHHHHHH---HHhcCC-CeEEEeccCC
Q 018278 165 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWDS 231 (358)
Q Consensus 165 ~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~---~~~~~p-~~~~gE~~~~ 231 (358)
.+...+++++.++.++.++.+.+.+|+.++++||||+|++.+++.+++... +....+ ...++|.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~dg~r~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (563)
T d2fhfa5 238 SATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGEGWDS 308 (563)
T ss_dssp CTTSSEEBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHTTCTTCEEEECCCCC
T ss_pred CCCCCcccCccchhHHHHHHHhhHHHHhhhcccccchhhhhhcchhhhhhhhHHHhhhCcccccccccccc
Confidence 223456799999999999999999999889999999999999999888665 334455 6788998865
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Probab=100.00 E-value=1.4e-47 Score=362.58 Aligned_cols=178 Identities=16% Similarity=0.059 Sum_probs=130.8
Q ss_pred CCceEEEeeecCCCCCCCCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 018278 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~ 99 (358)
+++|+|++|. |+++ +|||+||++|||||++||||+|||+||++++ ++|||++.||++|| |+|||++|||+|
T Consensus 2 ~~~~~~~~y~-d~~~--~Gdl~g~~~~Ldyl~~LGv~~I~L~Pi~~~~~~~d~GY~~~Dy~~vd-p~~Gt~~d~k~L--- 74 (434)
T d1r7aa2 2 KNKVQLITYA-DRLG--DGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVD-ERLGSWDDVAEL--- 74 (434)
T ss_dssp CSSCEEEECS-SSBS--SSSHHHHHHHHHHHSTTTCCEEEECCCEECSSSSSTTSSCSEEEEEC-TTTCCHHHHHHH---
T ss_pred CCceEEEEec-CCCC--CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCcCcccccccC-cccCCHHHHHHH---
Confidence 7899999998 8876 5999999999999999999999999999743 68999999999999 999999999999
Q ss_pred HHHcCCEEEEEeecccccccCCCCC-----------ccee-eccCCCCCC------CCCCCCCcccCCCCccCCCCCCCC
Q 018278 100 FRQKGIKCLADMVINHRTAERKDGR-----------GIYC-IFEGGTSDD------RLDWGPSFICRGDKEYSDGQGNDD 161 (358)
Q Consensus 100 ~H~~Gi~VilD~V~NH~~~~~~~~~-----------~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 161 (358)
++||+||||+|+||+|..|+... ..++ .+....+.. ...+..................+.
T Consensus 75 --~rGi~VIlDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (434)
T d1r7aa2 75 --SKTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLV 152 (434)
T ss_dssp --HTTSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEE
T ss_pred --HhCCeeeEEecccccccccchhhhhhhccCCCcccccccccCCCCCCccccCCCCcccccCCccccccccccccccee
Confidence 47999999999999998875110 0111 000000000 000000000000000001111233
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCH
Q 018278 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 209 (358)
Q Consensus 162 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~ 209 (358)
...+...++++|+.+|+|++++.+++++|++ +|+||||+|+++++..
T Consensus 153 ~~~~~~~~~~ln~~~p~v~~~~~~~~~~w~~-~g~dg~r~d~~~~~~~ 199 (434)
T d1r7aa2 153 WVSFTPQQVDIDTDSDKGWEYLMSIFDQMAA-SHVSYIRLDAVGYGAK 199 (434)
T ss_dssp ECSSSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEETGGGSCC
T ss_pred eeccccccchhcccchhhhhhhhhHhhhhhc-cCCccccccccccccc
Confidence 4456678899999999999999999999997 8999999999998743
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.5e-46 Score=367.11 Aligned_cols=310 Identities=13% Similarity=0.115 Sum_probs=206.9
Q ss_pred hhcCCCCCCceEEEeeec---CCCCCC--------------CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC-------C
Q 018278 15 AIFLPFTSPALLFQGFNW---ESSNKA--------------GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-------A 70 (358)
Q Consensus 15 ~~~~~~~~~~v~~q~F~~---~~~~~~--------------~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~-------~ 70 (358)
..+|.|.+++||||+|.. ++++++ +|||+||+++|||||+||||+||||||+++. .
T Consensus 75 ~~~p~w~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~~Gi~~kLdYLk~LGvtaI~L~Pi~~~~~~~~~~~~ 154 (572)
T d1gjwa2 75 EKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDA 154 (572)
T ss_dssp CCSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSS
T ss_pred CCCCccccCcEEEEEechhhcCCCCCCCcccccCcccCccCCCCHHHHHHhhHHHHHcCCCEEEeCCcccCccccCCCCC
Confidence 457899999999999852 223221 5999999999999999999999999999753 3
Q ss_pred CCCCCccccCCCCCCC--------CCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCC--CcceeeccC------CC
Q 018278 71 PQGYMPGRLYDLDASK--------YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG--RGIYCIFEG------GT 134 (358)
Q Consensus 71 ~~gY~~~d~~~id~~~--------~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~--~~~~~~~~~------~~ 134 (358)
+|||++.||++|| |+ |||++|||+||++||++||+||||+|+|||+.+|+.. ..+|+.+.. +.
T Consensus 155 ~~GY~~~dy~~~d-p~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~VIlDvV~NHts~~~~~~~~~~~~~~~~~~~~~~d~~ 233 (572)
T d1gjwa2 155 PSPYSVKNPMELD-ERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYT 233 (572)
T ss_dssp CCTTSEEEEEEEC-GGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCC
T ss_pred CCCCCccCCCCCC-cccccccccCCCCHHHHHHHHHHHHhcCcEEEEEeeecccccCCHHHHhCccccccccccccccCC
Confidence 7899999999999 75 7999999999999999999999999999999988632 122322211 11
Q ss_pred CCCCCCCCCCcc--------------------cCC-----------------------------------CCccCCCCCC
Q 018278 135 SDDRLDWGPSFI--------------------CRG-----------------------------------DKEYSDGQGN 159 (358)
Q Consensus 135 ~~~~~~~~~~~~--------------------~~~-----------------------------------~~~~~~~~~~ 159 (358)
+.....+..... +.. ...+.+....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgfr~d~~~~~~~~~~~~~~ 313 (572)
T d1gjwa2 234 PPRAEELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQP 313 (572)
T ss_dssp CCCCTTSCSBCCCHHHHHHHHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSC
T ss_pred CCCCCCCcccCCCCcccccccCCceeeeeccccCCCccccCHHHHHHHHHHhhhHHhcccceeeccccccccccccCCcc
Confidence 110000000000 000 0000000000
Q ss_pred C----------------------CC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCCHH
Q 018278 160 D----------------------DT-------GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 210 (358)
Q Consensus 160 ~----------------------~~-------~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~ 210 (358)
. .. .........++..++++++++.+.+++|++.+|++|+|++.+.+++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (572)
T d1gjwa2 314 TWDDVTFLRLYLDHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKE 393 (572)
T ss_dssp CBTTEEECCCBSSCCGGGGGGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGSCHH
T ss_pred cccchhhhhhcccCcchhhhhhcccccchhhccchhhcccccccccHHHHHHHhhhhhHHHhhccccchhhhccccCchh
Confidence 0 00 000123345677889999999999999999999999999999999999
Q ss_pred HHHHHH---HhcCC-CeEEEeccCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCceeeeccchHHHHHHHHcCchhhhhh
Q 018278 211 ITKVYM---ENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKD 286 (358)
Q Consensus 211 ~~~~~~---~~~~p-~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~ 286 (358)
+|+.+. +..++ ++++||..... . .+.....+...+++....... .........+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~e~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 451 (572)
T d1gjwa2 394 LLDLIIKNVKEYDPAFVMIAEELDME---------------K----DKASKEAGYDVILGSSWYFAG---RVEEIGKLPD 451 (572)
T ss_dssp HHHHHHHHHHHHCTTCEEEECCCCGG---------------G----HHHHHHHTCSEECCCHHHHHT---CTTTGGGHHH
T ss_pred HHHHHHHHHhccCCceEEEeeecccc---------------c----chhhhhcchhhHhccchhhHH---HHHHHHHHHh
Confidence 998874 44566 67889876421 1 111111222223332221100 0011111111
Q ss_pred cCCCCCCccCCCCCceeecccCCCCCcCcCCCCCCcchHHHHHHHHHcCCCeeeeecCccccCCCCCC
Q 018278 287 SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIVISVTYPLFHPLN 354 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~l~~~pG~P~IyyGdE~G~~~~~n 354 (358)
.. .......+++++|||++|+++.......+.++|++++||+||+||||||||+|++++.|
T Consensus 452 ~~-------~~~~~~~~~~~~nHD~~R~~~~~~~~~~~~~~a~~~l~~~~GiP~iy~GdE~G~~~~~n 512 (572)
T d1gjwa2 452 IA-------EELVLPFLASVETPDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMN 512 (572)
T ss_dssp HH-------HTCSSCEEECSCCTTSCCGGGSTTHHHHHHHHHHHHHTSTTEEEEEETTGGGTCCSCSC
T ss_pred hc-------cccccceeeeccCCCccchhhhcCCHHHHHHHHHHHHHHhcccceeecchhcCCCCCCC
Confidence 10 11234567899999999999987766677889999999999999999999999987655
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=100.00 E-value=8.8e-35 Score=285.49 Aligned_cols=185 Identities=14% Similarity=0.178 Sum_probs=129.7
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+|||++++++|||||+|||++|||+||+++. ++|||+++||++|| |+|||++||++||++||++||+||+|+|+|||
T Consensus 13 gftF~~~~~~LpYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vd-p~lGt~edf~~LV~aaH~~Gm~VIlDiVpNH~ 91 (653)
T d1iv8a2 13 NFNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRIN-DELGGEKEYRRLIETAHTIGLGIIQDIVPNHM 91 (653)
T ss_dssp TBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEEC-TTTTHHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CCCHHHHHHhhHHHHHCCCCEEEECccCCCCCCCCCCccccCccccc-hhcCCHHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 6899999999999999999999999999754 68999999999999 99999999999999999999999999999999
Q ss_pred cccCCC-------------CCcceeeccCCCCC-----CCCCCC----------------------CCcccCCC------
Q 018278 117 TAERKD-------------GRGIYCIFEGGTSD-----DRLDWG----------------------PSFICRGD------ 150 (358)
Q Consensus 117 ~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~----------------------~~~~~~~~------ 150 (358)
|.++++ ....|+.+...... ....|. ........
T Consensus 92 g~d~~~~~~~Dvl~~G~~S~y~~~fdi~~~~~~~~~p~lg~~~~~~l~~g~~~~~~d~~~~~~~~~~~~~P~~~~~~~~~ 171 (653)
T d1iv8a2 92 AVNSLNWRLMDVLKMGKKSKYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIY 171 (653)
T ss_dssp ECCTTCHHHHHHHHHGGGSTTGGGBCBCTTCSSEEEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEEEECSCCCSSHH
T ss_pred cCCcccHHHHHhhhcCCCCCCcccccccCCCCCccCCCCCccchhccCCCcceecCCCCceecccccccCCCCCcCccch
Confidence 987641 11122222111000 000000 00000000
Q ss_pred ----------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC--CHHHHHHHHHh
Q 018278 151 ----------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMEN 218 (358)
Q Consensus 151 ----------~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~~ 218 (358)
..|. ...++........+++++.++|+|.+ ++.++|++ +||||||+|+++++ |.+||+++.+.
T Consensus 172 ~~~~~q~y~l~~W~-~~~~~~rFfdv~~l~~lr~e~p~Vf~---~v~~~w~e-lGVDGfRID~vd~L~dp~~y~~~lr~~ 246 (653)
T d1iv8a2 172 DTLQKQNYTLMSWK-NPPSYRRFFDVNTLIGVNVEKDHVFQ---ESHSKILD-LDVDGYRIDHIDGLYDPEKYINDLRSI 246 (653)
T ss_dssp HHHTTSSEEEEETT-SCCSBCEETTEEEEEEBCTTSHHHHH---HHTTTGGG-SCCSEEEETTGGGCSCHHHHHHHHHHH
T ss_pred hhhhccccCCCCCC-CCcccccccccccccccccccHHHHH---HHHHHHHH-cCCcEEEeeCcccccCHHHHHHHHHHh
Confidence 0000 01111122233456678888888754 44566776 99999999999999 57899999888
Q ss_pred cCCCeEEEecc
Q 018278 219 TSPDFAVGEKW 229 (358)
Q Consensus 219 ~~p~~~~gE~~ 229 (358)
.++.++++|.+
T Consensus 247 ~~~~~ivvEki 257 (653)
T d1iv8a2 247 IKNKIIIVEKI 257 (653)
T ss_dssp HTTCEEEECCC
T ss_pred cCCCEEEEEee
Confidence 88877666643
|
| >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.62 E-value=1e-06 Score=83.25 Aligned_cols=59 Identities=12% Similarity=-0.040 Sum_probs=47.0
Q ss_pred ceEEEeeecCCCCCCCCch-HHHHhhhhhHHHcCCCEEEeCCCCCCC-----CCCCCCccccCCCC
Q 018278 24 ALLFQGFNWESSNKAGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLYDLD 83 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~-~gl~~~L~yl~~LGv~~I~l~Pi~~~~-----~~~gY~~~d~~~id 83 (358)
+|++|+|-..+. -|.||| +++.+-+|.+++.|++.|+|+|+.+.. .+..|++.+-++.|
T Consensus 28 Gvllh~~SLp~~-~GiGDfG~~a~~fvd~l~~~G~~~wQiLPL~~t~~~~~~~~SPYs~~S~falN 92 (523)
T d1x1na1 28 GILLHPTSFPGP-YGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGN 92 (523)
T ss_dssp EEECCGGGSCCT-TSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCC
T ss_pred EEEecCccCCCC-CCCCcccHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCCCCcchhcchhcC
Confidence 799999865542 357999 788899999999999999999998752 23478887777766
|
| >d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Aquifex aeolicus [TaxId: 63363]
Probab=98.45 E-value=2.7e-06 Score=79.41 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=45.8
Q ss_pred ceEEEeeecCCCCCCCCch-HHHHhhhhhHHHcCCCEEEeCCCCCCC---CCCCCCccccCCCC
Q 018278 24 ALLFQGFNWESSNKAGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLD 83 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~-~gl~~~L~yl~~LGv~~I~l~Pi~~~~---~~~gY~~~d~~~id 83 (358)
+|++|.|.-.+ .-|.||| +++.+-++.+++.|++.|+|+|+.+.. ++..|++.+-+++|
T Consensus 5 Gvll~~~SLps-~~GIGDfG~~a~~~id~~a~~G~~~~QllPl~~t~~~~~~SPYsp~S~falN 67 (485)
T d1tz7a1 5 GILLHVTSLPS-PYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGN 67 (485)
T ss_dssp EEECCGGGSCC-SSSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCC
T ss_pred eeeecccccCC-CCCCCCHHHHHHHHHHHHHHcCCCEEEecCCCCCCCCCCCCCcCcccchhcC
Confidence 46666664433 2357999 889999999999999999999999753 24678888888777
|
| >d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Thermus aquaticus [TaxId: 271]
Probab=98.40 E-value=3e-06 Score=79.61 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=46.6
Q ss_pred ceEEEeeecCCCCCCCCch-HHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCC
Q 018278 24 ALLFQGFNWESSNKAGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLD 83 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~G~~-~gl~~~L~yl~~LGv~~I~l~Pi~~~~-~~~gY~~~d~~~id 83 (358)
+|++|+|--.++ -|.||| +++.+-++.+++.|++.++|+|+.+.. ++..|++.+-+++|
T Consensus 8 Gvllh~~SLp~~-~GiGdfG~~a~~fid~l~~~G~~~wQiLPl~pt~~~~SPYs~~S~fAlN 68 (500)
T d1eswa_ 8 GLLLHPTSLPGP-YGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGN 68 (500)
T ss_dssp EEECCGGGSCCS-SSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCC
T ss_pred eeEeCccccCCC-CCCcchhHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCcCcccchhcC
Confidence 577777754432 347999 899999999999999999999999753 34578888777776
|
| >d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Alpha-galactosidase GalA catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.11 E-value=1.4e-06 Score=78.61 Aligned_cols=131 Identities=10% Similarity=0.078 Sum_probs=83.0
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~ 120 (358)
+-+.+.+.++.++++|++.|+|=--+.. . ..|+ .+|+.+|. +++.|++.+|++||++.+-+.+..++..+
T Consensus 21 ~e~~i~~~a~~~~~~g~~~i~iDdgW~~--~----~gd~-~~d~~~FP---glk~l~~~~h~~G~k~gl~~~p~~~~~~s 90 (348)
T d1zy9a2 21 TWEETLKNLKLAKNFPFEVFQIDDAYEK--D----IGDW-LVTRGDFP---SVEEMAKVIAENGFIPGIWTAPFSVSETS 90 (348)
T ss_dssp CHHHHHHHHHHGGGTTCSEEEECTTSEE--E----TTEE-EEECTTCC---CHHHHHHHHHHTTCEEEEEECTTEEETTC
T ss_pred CHHHHHHHHHHHHcCCCcEEEECccccc--C----CCCc-eECcccCc---CHHHHHHHHHhcCCEEEEEeeeccccCCc
Confidence 3566778888899999999998432211 1 1132 34436777 58999999999999999998876655443
Q ss_pred CC--CCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 018278 121 KD--GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (358)
Q Consensus 121 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDG 198 (358)
+. ....|..-....+. ... .+ ......-+|+.+|++++++.+.++.+.+ .|||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~--------~~~----~~-----------~~~~~~~lD~~~p~~~~~~~~~~~~~~~-~Gvd~ 146 (348)
T d1zy9a2 91 DVFNEHPDWVVKENGEPK--------MAY----RN-----------WNKKIYALDLSKDEVLNWLFDLFSSLRK-MGYRY 146 (348)
T ss_dssp HHHHHCGGGBCEETTEEC--------EEE----EE-----------TTEEEEEBCTTCHHHHHHHHHHHHHHHH-TTCCE
T ss_pred HHHHhCccceeccCCCCc--------ccc----cc-----------CCCCeeccCCCcHHHHHHHHHHHHHHHh-cCCCE
Confidence 20 00111110000000 000 00 0001122899999999999999998876 99999
Q ss_pred EeeccCC
Q 018278 199 WRFDFVK 205 (358)
Q Consensus 199 fR~D~a~ 205 (358)
|.+|...
T Consensus 147 ~K~D~~~ 153 (348)
T d1zy9a2 147 FKIDFLF 153 (348)
T ss_dssp EEECCGG
T ss_pred EEeCCCC
Confidence 9999764
|
| >d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Putative glucosidase YicI, domain 2 species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.00013 Score=64.92 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=82.0
Q ss_pred hHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 018278 42 YNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (358)
Q Consensus 42 ~~gl~~~L~yl~~LG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~ 119 (358)
-+.+.+.++.+++.| ++.|+|-.-+.. +|...+ +..|+.+|- |.++||+++|++|++|++-+.+ |++.+
T Consensus 36 ~~~v~~~~~~~r~~~iP~d~i~iD~~w~~----~~~~~~-f~~d~~~FP---dp~~~i~~l~~~G~~~~l~~~P-~i~~~ 106 (338)
T d2f2ha4 36 EATVNSFIDGMAERNLPLHVFHFDCFWMK----AFQWCD-FEWDPLTFP---DPEGMIRRLKAKGLKICVWINP-YIGQK 106 (338)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECGGGBC----TTCCSS-CCBCTTTCS---CHHHHHHHHHHTTCEEEEEECS-EECTT
T ss_pred HHHHHHHHHHHHHcCCCcceEEEcCchhc----CCCcCc-eeeCcccCC---CHHHHHHHHHHCCCeEEEeecC-ccCCC
Confidence 345777788888877 788887654432 122223 233424554 4789999999999999999766 45555
Q ss_pred CCCC----CcceeeccC-CCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018278 120 RKDG----RGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (358)
Q Consensus 120 ~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~ 194 (358)
++.. ...|+.-.. +...... .......-+|+.||++++...+.++..++ .
T Consensus 107 ~~~~~~~~~~g~~~~~~~g~~~~~~------------------------~~~~~~~~~D~tnp~a~~w~~~~~~~~~~-~ 161 (338)
T d2f2ha4 107 SPVFKELQEKGYLLKRPDGSLWQWD------------------------KWQPGLAIYDFTNPDACKWYADKLKGLVA-M 161 (338)
T ss_dssp STTHHHHHHHTCBCBCTTSSBCCBS------------------------SSSTTBEEBCTTSHHHHHHHHHHHHHHHH-T
T ss_pred ChhHHHHHhCCEEEECCCCCceeee------------------------cCCCCccccccCCHHHHHHHHHHhhcccc-c
Confidence 4311 011111110 0000000 01111223899999999999999999886 9
Q ss_pred CCCeEeeccCCCC
Q 018278 195 GFDGWRFDFVKGY 207 (358)
Q Consensus 195 gvDGfR~D~a~~i 207 (358)
|||||-+|.....
T Consensus 162 Gidg~w~D~~e~~ 174 (338)
T d2f2ha4 162 GVDCFKTDFGERI 174 (338)
T ss_dssp TCCEEEECCCCCC
T ss_pred CCceEEecCCCCC
Confidence 9999999987644
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=97.05 E-value=0.00026 Score=62.89 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=44.1
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+-+.+.+.|+.+|++|+|+|-+...... ....+.+.. -..+ ....+.|+++++.|.++||+||+|+.
T Consensus 37 ~~~~~~~~l~~~k~~G~N~vR~~~~~~~-~~~~~~~~~-g~~~---~~~l~~ld~~l~~a~~~Gi~vi~~l~ 103 (370)
T d1rh9a1 37 TRIKVTNTFQQASKYKMNVARTWAFSHG-GSRPLQSAP-GVYN---EQMFQGLDFVISEAKKYGIHLIMSLV 103 (370)
T ss_dssp TTHHHHHHHHHHHHTTCCEEEEESSCSS-SSSCSEEET-TEEC---HHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CHHHHHHHHHHHHHCCCeEEEECCccCc-cCcccCCCC-Cccc---HHHHHHHHHHHHHHHHcCCEEEEecc
Confidence 4566778899999999999998432211 111111110 0011 12378899999999999999999985
|
| >d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Trichoderma reesei [TaxId: 51453]
Probab=96.86 E-value=0.0015 Score=57.30 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=46.4
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC-------CHHHHHHHHHHHHHcCCEEEEEee
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG-------SQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G-------t~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+-..+.+.|+.++++|+|+|.+.-..+....+-+....+..++ ..-| ..+.+.+++++|+++||+||+|+.
T Consensus 33 ~~~~~~~~~l~~~~~~G~N~iR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ld~~~~~a~~~Gi~vi~~l~ 111 (344)
T d1qnra_ 33 TNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLS-ATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFV 111 (344)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECCCCCEESSCCSTTCCCSEECC-TTCCEECCSTTTTHHHHHHHHHHHHHTCEEEEESC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECCcccccccCCCCccchhhcc-cccCccccCHHHHHHHHHHHHHHHHcCCeeEeecc
Confidence 45677888899999999999997322111111111111111122 1111 367899999999999999999986
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=96.84 E-value=0.004 Score=54.80 Aligned_cols=87 Identities=16% Similarity=0.336 Sum_probs=54.6
Q ss_pred CCceEEEeeecCCCCCC-----CCchHHHHhhhhhHHHcCCCEEEeCCCCCC---CCCCCCCccccCCCCCCCC---CCH
Q 018278 22 SPALLFQGFNWESSNKA-----GGWYNSLKNSIPDLSNAGITHVWLPPPSQS---VAPQGYMPGRLYDLDASKY---GSQ 90 (358)
Q Consensus 22 ~~~v~~q~F~~~~~~~~-----~G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~---~~~~gY~~~d~~~id~~~~---Gt~ 90 (358)
.+.+.++..+|-..... +-+-+.+.+.++.||++|+++|-| |+.-. +..-.+... .++.+ +.+ ...
T Consensus 18 G~~~~l~GvN~~g~~~~~~~~~~~~~~~~~~~~~~i~~~G~N~VRl-pv~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 94 (358)
T d1ecea_ 18 NVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRL-PYSDDILKPGTMPNSIN-FYQMN-QDLQGLTSL 94 (358)
T ss_dssp SCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEE-EEEGGGGSTTCCCCSCC-CSSSC-TTTTTCCHH
T ss_pred CCEEEEEEEccCcccccccccccCCccHHHHHHHHHHHcCCCEEEe-cCcHHHccCCCCCCCcc-ccccC-hhhhchhHH
Confidence 34677777776322111 112234677799999999999999 33211 011111111 23444 333 237
Q ss_pred HHHHHHHHHHHHcCCEEEEEe
Q 018278 91 ADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 91 ~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.|+++|+.|+++||+||+|+
T Consensus 95 ~~ld~~v~~a~~~Gl~Vildl 115 (358)
T d1ecea_ 95 QVMDKIVAYAGQIGLRIILDR 115 (358)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceeeec
Confidence 889999999999999999997
|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exomannosidase species: Cellvibrio mixtus [TaxId: 39650]
Probab=96.60 E-value=0.0026 Score=56.58 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=50.3
Q ss_pred CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCC-----HHHHHHHHHHHHHcCCEEEEEeec
Q 018278 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-----QADLKSLIQAFRQKGIKCLADMVI 113 (358)
Q Consensus 40 G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-----~~d~~~Lv~~~H~~Gi~VilD~V~ 113 (358)
.+-+.+.+.|+.||++|+|+|-+....+... +....+..+. +..|. .+.+.+++++|+++||+||+|+..
T Consensus 38 ~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~~---~~~~~~~~~~-~~~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~ 112 (410)
T d1uuqa_ 38 GDRDRLAKELDNLKAIGVNNLRVLAVSEKSE---INSAVKPAVT-NGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNN 112 (410)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCBCCC---STTSCSSCSB-SSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred CCHHHHHHHHHHHHHCCCcEEEeCCcccccc---cccccCCCcc-cccccccHHHHHHHHHHHHHHHHcCCeeEEeccc
Confidence 4667788889999999999998754333211 2222233444 55555 567889999999999999999853
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=96.60 E-value=0.0027 Score=57.10 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=40.0
Q ss_pred hhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 48 SIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 48 ~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
-++.||+.|+++|-| |++-.+..+...+. . ...-..+.++++++.||++||+||+|+
T Consensus 43 ~~~~lk~~G~n~VRl-~vw~~~~~~~~~~~---~---~g~~~l~~~~~~~~~a~~~Gl~v~ldl 99 (387)
T d1ur4a_ 43 IFKTLKEAGVNYVRV-RIWNDPYDANGNGY---G---GGNNDLEKAIQIGKRATANGMKLLADF 99 (387)
T ss_dssp HHHHHHHTTCCEEEE-EECSCCBCTTCCBC---S---TTCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCCEEEe-ecccCCcccccCcC---C---CccccHHHHHHHHHHHHHCCCEEEEEe
Confidence 478999999999996 45443322211110 0 111248899999999999999999997
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.0089 Score=54.00 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=37.6
Q ss_pred hhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEe
Q 018278 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 49 L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
++.||++|+|+|-|+=-+ +.+.+. .-+ +.+. ..+-|+++|+.|.++||+||||+
T Consensus 79 ~~~i~~~G~N~VRiPi~~-----~~~~~~---~~~-~~~~~~~~~~ld~~v~~a~~~gl~VilDl 134 (408)
T d1h4pa_ 79 FANIASQGFNLVRIPIGY-----WAFQIL---DDD-PYVSGLQESYLDQAIGWARNNSLKVWVDL 134 (408)
T ss_dssp HHHHHHTTCCEEEEEEEG-----GGTCCC---TTC-CCCCSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCCEEEEeccH-----HHhcCC---CCC-CCcChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 789999999999996211 111111 112 2222 25679999999999999999997
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=96.38 E-value=0.0025 Score=52.92 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=40.2
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~ 116 (358)
+.+...+-|+..++.|++.|+.+=..... +.--..+.|++|++.||+.||+||+|+.++-.
T Consensus 15 ~~e~~~~yi~~a~~~Gf~~iFTSL~~~e~---------------~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l 75 (244)
T d1x7fa2 15 TKEKDMAYISAAARHGFSRIFTCLLSVNR---------------PKEEIVAEFKEIINHAKDNNMEVILDVAPAVF 75 (244)
T ss_dssp CHHHHHHHHHHHHTTTEEEEEEEECCC-----------------------HHHHHHHHHHHHTTCEEEEEECTTCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEecCccCCC---------------CHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHH
Confidence 35555566666678999999864211010 11112467999999999999999999987644
|
| >d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=96.27 E-value=0.0045 Score=54.46 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=40.7
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
+.++.||+.||++|.|- ++-.+ . +..-+.+.++++++.|+++||+|++|+...
T Consensus 31 d~~~~lk~~G~n~VRlr-vW~~p-------------~-~g~~~~~~~~~~~~~a~~~Gm~vll~~hys 83 (334)
T d1foba_ 31 ALETILADAGINSIRQR-VWVNP-------------S-DGSYDLDYNLELAKRVKAAGMSLYLDLHLS 83 (334)
T ss_dssp CHHHHHHHHTCCEEEEE-ECSCC-------------T-TCTTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cHHHHHHHcCCCEEEee-eeeCC-------------C-CCcCcHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 34678999999999975 54221 1 222368899999999999999999999553
|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelC species: Clostridium thermocellum [TaxId: 1515]
Probab=96.08 E-value=0.012 Score=51.47 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=38.4
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccc-cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR-LYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d-~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+-++.||++|+|+|-| ||.-. .+.+.+ -..++ + +..+.|+++|+.|+++||+||+|+
T Consensus 31 e~d~~~i~~~G~n~vRl-pi~~~----~~~~~~~~~~~~-~--~~~~~ld~~v~~a~~~gi~vild~ 89 (340)
T d1ceoa_ 31 EKDIETIAEAGFDHVRL-PFDYP----IIESDDNVGEYK-E--DGLSYIDRCLEWCKKYNLGLVLDM 89 (340)
T ss_dssp HHHHHHHHHHTCCEEEE-EEEGG----GTBCSSSTTCBC-H--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEe-ecCHH----HhccCCCCCccC-H--HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 34588999999999999 44210 000000 00111 1 125779999999999999999997
|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: endo-1,4-beta-mannosidase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=96.02 E-value=0.0027 Score=55.06 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=42.8
Q ss_pred hHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCC-CccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGY-MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 42 ~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY-~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
.+.+.+.|++||++|+|+|-+............ .......++ + ...+.++++++.|.++||+||+|+.
T Consensus 41 ~~~~~~~l~~~~~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~d~~~~~a~~~gi~vi~d~~ 109 (350)
T d2c0ha1 41 KSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGID-N--TLISDMRAYLHAAQRHNILIFFTLW 109 (350)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECC-T--THHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccCccCCcccccCCCCCccC-h--hhhHHHHHHHHHHHHCCCEEEEEec
Confidence 344566799999999999987322211100000 000001122 2 2378899999999999999999984
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=95.85 E-value=0.0049 Score=53.71 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=39.0
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++.||+.|+++|.|. ++-.+ . +.....+.++++|+.|+++||+||+|+
T Consensus 31 ~~~~~lk~~G~n~VRi~-vW~~p-------------~-~g~~~~~~~~~~v~~a~~~gl~vil~~ 80 (332)
T d1hjsa_ 31 PLENILAANGVNTVRQR-VWVNP-------------A-DGNYNLDYNIAIAKRAKAAGLGVYIDF 80 (332)
T ss_dssp CHHHHHHHTTCCEEEEE-ECSSC-------------T-TCTTSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHcCCCEEEee-eeecC-------------C-CCccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45678999999999984 55211 1 122358899999999999999999997
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=95.57 E-value=0.018 Score=51.60 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=38.4
Q ss_pred hhhhHHHcCCCEEEeCCC-CCCCCCCCCCccccCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 48 SIPDLSNAGITHVWLPPP-SQSVAPQGYMPGRLYDLDASK-YGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 48 ~L~yl~~LGv~~I~l~Pi-~~~~~~~gY~~~d~~~id~~~-~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.++.||++|+|+|-| || +.. +...+ -+ +. -+..+.|+++|+.|.++||+||+|+
T Consensus 73 D~~~i~~~G~N~VRi-Pv~~~~-----~~~~~---~~-~~~~~~~~~ld~~i~~a~~~gl~VilDl 128 (394)
T d2pb1a1 73 DFKQISNLGLNFVRI-PIGYWA-----FQLLD---ND-PYVQGQVQYLEKALGWARKNNIRVWIDL 128 (394)
T ss_dssp HHHHHHHTTCCEEEE-EEEGGG-----TCCCT---TC-CCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCEEEE-EecHHH-----hcCCC---CC-ccchhHHHHHHHHHHHHHHCCcEEEEEe
Confidence 378999999999999 44 221 11111 11 11 1357889999999999999999997
|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelA species: Clostridium cellulolyticum [TaxId: 1521]
Probab=95.47 E-value=0.0035 Score=56.16 Aligned_cols=58 Identities=14% Similarity=0.270 Sum_probs=41.3
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+.++.||++|+++|-|+ |. ...+....-+.++ +.+ ++.++++|+.|+++||+||||+
T Consensus 64 ~~~i~~ik~~Gfn~vRiP-v~----w~~~~~~~~~~i~-~~~--l~~v~~vV~~a~~~Gl~VIldl 121 (380)
T d1edga_ 64 KQMIDAIKQKGFNTVRIP-VS----WHPHVSGSDYKIS-DVW--MNRVQEVVNYCIDNKMYVILNT 121 (380)
T ss_dssp HHHHHHHHHHTCCEEEEC-CC----CGGGEETTTTEEC-HHH--HHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEc-cc----HHHhcCCCCCccC-HHH--HHHHHHHHHHHHHcCCEEEEec
Confidence 456899999999999995 32 1111111113455 432 6789999999999999999996
|
| >d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Bacillus sp. JAMB-602 [TaxId: 244966]
Probab=95.34 E-value=0.013 Score=50.11 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=40.4
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 44 gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
-..+.++.||++|+|+|.|. +.+. + .+.- +..+.|+++|+.|.++||+||+|+-
T Consensus 33 ~~~~d~~~~~~~G~N~VRl~-~~~~----~-----~~~~-----~~~~~ld~~v~~a~~~Gi~vildlh 86 (297)
T d1wkya2 33 QATTAIEGIANTGANTVRIV-LSDG----G-----QWTK-----DDIQTVRNLISLAEDNNLVAVLEVH 86 (297)
T ss_dssp GHHHHHHHHHTTTCSEEEEE-ECCS----S-----SSCC-----CCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHCCCcEEEEe-ccCC----C-----ccCc-----cHHHHHHHHHHHHHHCCCceEeecc
Confidence 34566899999999999983 3221 1 1111 2478899999999999999999974
|
| >d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: Bacterial chitobiase (beta-N-acetylhexosaminidase) species: Serratia marcescens [TaxId: 615]
Probab=95.19 E-value=0.096 Score=47.38 Aligned_cols=77 Identities=12% Similarity=0.142 Sum_probs=52.9
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCC------CCCCC---------CCCCCCccccCCCCCCCCC----------CHHHHHH
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPP------PSQSV---------APQGYMPGRLYDLDASKYG----------SQADLKS 95 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~P------i~~~~---------~~~gY~~~d~~~id~~~~G----------t~~d~~~ 95 (358)
+.+.|.+.||.++-..+|.+++-= .++++ +.++.......... |.+| |.+|+++
T Consensus 16 ~~~~ik~~id~ma~~KlN~lH~HltD~qg~rle~~~~P~Lt~~ga~~~~~~~~~~~~~-~~~~~~~~~~~~~YT~~ei~e 94 (443)
T d1qbaa3 16 KKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLL-PQYGQGPDVYGGFFSRQDYID 94 (443)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECBCSSCBCBCCTTCTHHHHTTTEECSCTTCSSSBC-CCTTSCSSCEECCBCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCceeeeCCcchhhhhccccccccccccccc-ccccCCCCCCCCccCHHHHHH
Confidence 378888889999999999888731 01221 11222322222333 3222 6999999
Q ss_pred HHHHHHHcCCEEEEEe-ecccccc
Q 018278 96 LIQAFRQKGIKCLADM-VINHRTA 118 (358)
Q Consensus 96 Lv~~~H~~Gi~VilD~-V~NH~~~ 118 (358)
||+-|.++||+||-.+ ++.|+..
T Consensus 95 iv~yA~~rgI~vIPEID~PGH~~a 118 (443)
T d1qbaa3 95 IIKYAQARQIEVIPEIDMPAHARA 118 (443)
T ss_dssp HHHHHHHTTCEEEEEEEESSSCHH
T ss_pred HHHHHHHcCCEEeeccchHHHHHH
Confidence 9999999999999999 8899854
|
| >d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.092 Score=46.03 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=74.0
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCcccc--------CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe-
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL--------YDLDASKYGSQADLKSLIQAFRQKGIKCLADM- 111 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~--------~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~- 111 (358)
+...|.+.++.+..+++|.++|- +.+. ..+.+....| +..+ ..| |.+|+++||+-|+++||+||-.+
T Consensus 16 ~~~~lk~~id~ma~~K~N~lhlH-l~D~-~~~~~e~~~~P~l~~~g~~~~~-~~y-T~~d~~~lv~yA~~rgI~iiPEid 91 (353)
T d1nowa1 16 PVKIILKTLDAMAFNKFNVLHWH-IVDD-QSFPYQSITFPELSNKGSYSLS-HVY-TPNDVRMVIEYARLRGIRVLPEFD 91 (353)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEE-CCCS-SCCCBCCSSCHHHHHHHSSSTT-SCB-CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE-EecC-CCceeccCCCcchhhcCCCCCC-CCc-CHHHHHHHHHHHHHCCCEEEeccc
Confidence 36788888999999999998873 1111 1122222211 2223 333 89999999999999999999998
Q ss_pred ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCC-CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 018278 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD-KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190 (358)
Q Consensus 112 V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w 190 (358)
.+.|+..--.. ..+ ...... .... ......||..+|++.+++.+++...
T Consensus 92 ~PGH~~~~~~~-------~pe------------l~~~~~~~~~~-----------~~~~~~l~~~~~~t~~~~~~v~~e~ 141 (353)
T d1nowa1 92 TPGHTLSWGKG-------QKD------------LLTPCYSRQNK-----------LDSFGPINPTLNTTYSFLTTFFKEI 141 (353)
T ss_dssp ESSSCTTHHHH-------STT------------CEEECCC---------------CCSEEEECTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHH-------hhh------------hcCCccccCCc-----------CCCccccCCCchhhHHHHHHHHHHH
Confidence 78888653110 000 000000 0000 0000118889999999999999998
Q ss_pred HHhcC
Q 018278 191 KTEIG 195 (358)
Q Consensus 191 ~~~~g 195 (358)
++-+.
T Consensus 142 ~~~F~ 146 (353)
T d1nowa1 142 SEVFP 146 (353)
T ss_dssp HHHCC
T ss_pred HHhhc
Confidence 87443
|
| >d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Thermomonospora fusca [TaxId: 2021]
Probab=95.10 E-value=0.014 Score=49.99 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=38.9
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
..+.++.||++|+|+|-|. +... ..+. ....+.++++|+.|.++||+||+|+-
T Consensus 34 ~~~~~~~i~~~G~N~VRl~-~~~~---------~~~~-----~~~~~~~~~~v~~a~~~Gi~vildlh 86 (302)
T d1bqca_ 34 HTQAFADIKSHGANTVRVV-LSNG---------VRWS-----KNGPSDVANVISLCKQNRLICMLEVH 86 (302)
T ss_dssp CTTHHHHHHHTTCSEEEEE-ECCS---------SSSC-----CCCHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred hHHHHHHHHhcCCCEEEEe-cccc---------cccC-----cchHHHHHHHHHHHHHCCCEEEEEec
Confidence 3455889999999999984 2110 0111 12468899999999999999999983
|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase homologue TM1752 species: Thermotoga maritima [TaxId: 2336]
Probab=95.06 E-value=0.0089 Score=51.73 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=39.2
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCCCcc-ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPG-RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~-d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++.|+++|+|+|-|+=-+.. ..+. +.+.++ + ...+-++++|++|.++||+||+|+
T Consensus 24 ~d~~~l~~~G~n~vRlpv~~~~-----~~~~~~~~~~~-~--~~l~~ld~~v~~~~~~gi~vildl 81 (325)
T d1vjza_ 24 EDFLWMAQWDFNFVRIPMCHLL-----WSDRGNPFIIR-E--DFFEKIDRVIFWGEKYGIHICISL 81 (325)
T ss_dssp HHHHHHHHTTCCEEEEEEEGGG-----TSCSSCTTCCC-G--GGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEecccHHH-----ccCCCCCCccC-H--HHHHHHHHHHHHHHHcCCcEEEee
Confidence 4588999999999998421111 1110 112233 2 237789999999999999999997
|
| >d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Streptomyces plicatus, endoglycosidase H [TaxId: 1922]
Probab=95.00 E-value=0.036 Score=46.71 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCC
Q 018278 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (358)
Q Consensus 90 ~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (358)
.+++.+.|+.||++||||+|=+==+|.+.. +
T Consensus 64 ~~~~~~~i~~l~~~g~KvllsiGG~~~~~~---------------------------------f---------------- 94 (265)
T d1edta_ 64 LDNAVTQIRPLQQQGIKVLLSVLGNHQGAG---------------------------------F---------------- 94 (265)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEEECTTSCC---------------------------------T----------------
T ss_pred hhhHHHHHHHHHhCCCEEEEEEccCcCCCC---------------------------------c----------------
Confidence 446778899999999999988622222110 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 170 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
-+..+++-|+.+.+.+..+++.+|+||+-+|--
T Consensus 95 --~~~~s~~~~~~Fa~~~~~~~~~~~~DGiDiD~E 127 (265)
T d1edta_ 95 --ANFPSQQAASAFAKQLSDAVAKYGLDGVDFDDE 127 (265)
T ss_dssp --TCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred --eecCCHHHHHHHHHHHHHHHHhcCCCceEeccc
Confidence 123467888888888888888899999999975
|
| >d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Melibiase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.079 Score=44.92 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=35.8
Q ss_pred HHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 52 LSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 52 l~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
|+++|++.|.|===+... ...| ...+++.+|.+ .++.|++.+|++||++-+-+.+-
T Consensus 50 l~~~G~~~~~iDdGW~~~~~d~~G-----~~~~~~~~FP~--Gl~~l~~~i~~~G~~~Giw~~~~ 107 (292)
T d1r46a2 50 WKDAGYEYLCIDDCWMAPQRDSEG-----RLQADPQRFPH--GIRQLANYVHSKGLKLGIYADVG 107 (292)
T ss_dssp HHHHTCCEEECCSSCBCSSCCTTS-----CCCBCTTTCTT--HHHHHHHHHHHTTCEEEEEEESS
T ss_pred chhhCCeEEEEcCCcCCCCCCCCC-----CCccCcccccC--ccHHHHHHHHhcCceecccCCCc
Confidence 567899988762111111 1122 22344455553 69999999999999998877653
|
| >d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]
Probab=94.36 E-value=0.057 Score=45.91 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=49.5
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCC
Q 018278 80 YDLDASKYG-SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158 (358)
Q Consensus 80 ~~id~~~~G-t~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (358)
...+ +.+. ..+++..+|+.||++||||+|=+==+|.+..
T Consensus 56 ~~~~-~~~~~~~~~~~~~i~~~q~~g~KvllsigG~~~~~~--------------------------------------- 95 (285)
T d2ebna_ 56 VSNN-PNVQHLLTNRAKYLKPLQDKGIKVILSILGNHDRSG--------------------------------------- 95 (285)
T ss_dssp EECC-HHHHHHHHTHHHHTHHHHHTTCEEEEEEECCSSSCC---------------------------------------
T ss_pred eccC-cchhhhhhhHHHHHHHHHhCCCEEEEEeccCCCCcc---------------------------------------
Confidence 3444 4443 3566889999999999999998632221110
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 159 ~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
+.--+++-|+.+.+.+...++++|.||+-+|-=
T Consensus 96 -------------~~~~~~~~~~~F~~~~~~~~~~y~lDGiDiD~E 128 (285)
T d2ebna_ 96 -------------IANLSTARAKAFAQELKNTCDLYNLDGVFFDDE 128 (285)
T ss_dssp -------------TTCBCHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred -------------cccCCHHHHHHHHHHHHHHHHHcCCcEEecccc
Confidence 000156778888888888888899999999963
|
| >d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus actinomycetemcomitans [TaxId: 714]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: Dispersin B, DspB species: Actinobacillus actinomycetemcomitans [TaxId: 714]
Probab=94.23 E-value=0.14 Score=44.49 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=49.9
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCC-------------CC---CCCCCCHHHHHHHHHHHHHcC
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYD-------------LD---ASKYGSQADLKSLIQAFRQKG 104 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~-------------id---~~~~Gt~~d~~~Lv~~~H~~G 104 (358)
+...|.+.|+.++-+++|.++|-- .+.. .+.+....|-. .. ...+=|.+|+++||+-|.++|
T Consensus 16 ~~~~ik~~id~ma~~K~N~lhlHl-tDdq-~~~le~~~~p~l~~~~~~~~~~~~~~~~~~~~~yt~~e~~~lv~yA~~rg 93 (344)
T d1yhta1 16 SPEVIKSFIDTISLSGGNFLHLHF-SDHE-NYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKAKG 93 (344)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEC-BSSS-CBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe-ecCC-CceecccCCchhhhhccccCCCCCCCCCCCCcccCHHHHHHHHHHHHHcC
Confidence 478888889999999999998831 1100 01111110000 01 011227999999999999999
Q ss_pred CEEEEEe-ecccccc
Q 018278 105 IKCLADM-VINHRTA 118 (358)
Q Consensus 105 i~VilD~-V~NH~~~ 118 (358)
|.||-.+ ++.|++.
T Consensus 94 I~viPeiD~PGH~~~ 108 (344)
T d1yhta1 94 IELIPELDSPNHMTA 108 (344)
T ss_dssp CEEEEEEEESSSCHH
T ss_pred CEEEeccchhhHHHH
Confidence 9999888 7888764
|
| >d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase Cel5a species: Bacillus agaradhaerens [TaxId: 76935]
Probab=93.97 E-value=0.031 Score=47.80 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=38.5
Q ss_pred hhhhhHH-HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~-~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++.|+ ++|+|+|-|. +.+.. . .+..+ |.+ .+.++++|+.|.++||+||+|+
T Consensus 44 ~~~~~l~~~~G~N~VR~~-~~~~~--~------~~~~~-~~~--~~~ld~~v~~a~~~Gl~Vild~ 97 (300)
T d7a3ha_ 44 ESMKWLRDDWGINVFRAA-MYTSS--G------GYIDD-PSV--KEKVKEAVEAAIDLDIYVIIDW 97 (300)
T ss_dssp HHHHHHHHHTCCCEEEEE-EESST--T------STTTC-TTH--HHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEe-eEcCc--c------CcccC-HHH--HHHHHHHHHHHHHCCCEEEEee
Confidence 3455664 6999999983 43321 1 23455 543 7789999999999999999997
|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alkaline cellulase K catalytic domain species: Bacillus sp. [TaxId: 1409]
Probab=93.91 E-value=0.031 Score=49.11 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=39.3
Q ss_pred hhhhhHH-HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 47 ~~L~yl~-~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+.++.|+ ++|+|+|-|. +.. .. .-+..+ +.+ .+.+++.|+.|.++||+||||+
T Consensus 55 ~~~~~l~~~~G~N~VRlp-~~~-------~~-~~~~~~-~~~--~~~ld~~V~~a~~~GiyVIlD~ 108 (357)
T d1g01a_ 55 NAFVALSNDWGSNMIRLA-MYI-------GE-NGYATN-PEV--KDLVYEGIELAFEHDMYVIVDW 108 (357)
T ss_dssp HHHHHHHTTSCCSEEEEE-EES-------SS-SSTTTC-TTH--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEe-eee-------cC-CCCccC-HHH--HHHHHHHHHHHHHCCCEEEEee
Confidence 3466776 5899999983 321 11 124556 644 7889999999999999999997
|
| >d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase EngI species: Thermoascus aurantiacus [TaxId: 5087]
Probab=93.82 E-value=0.029 Score=48.34 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=39.7
Q ss_pred HhhhhhHHHcCCCEEEeCCCC-CC--CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 46 KNSIPDLSNAGITHVWLPPPS-QS--VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 46 ~~~L~yl~~LGv~~I~l~Pi~-~~--~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
.+.+++|+++|+++|-|+ |. +. +...++ .++ + ...+.++++|+.|.++||+||+|+
T Consensus 34 ~~di~~l~~~G~N~VRlP-v~~~~~~~~~~~~------~~~-~--~~~~~l~~~v~~a~~~gl~vIlD~ 92 (305)
T d1h1na_ 34 PNTIDTLISKGMNIFRVP-FMMERLVPNSMTG------SPD-P--NYLADLIATVNAITQKGAYAVVDP 92 (305)
T ss_dssp HHHHHHHHHTTCCEEEEE-ECHHHHSCSSTTS------CCC-H--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEee-eeHHHhccCCCCC------ccC-H--HHHHHHHHHHHHHHhcCCeEEEec
Confidence 455899999999999984 32 11 011111 233 2 236789999999999999999997
|
| >d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-N-acetylhexosaminidase species: Streptomyces plicatus [TaxId: 1922]
Probab=93.52 E-value=0.22 Score=43.48 Aligned_cols=125 Identities=10% Similarity=0.053 Sum_probs=72.9
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCcccc---------CCCC--CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRL---------YDLD--ASKYGSQADLKSLIQAFRQKGIKCLA 109 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~---------~~id--~~~~Gt~~d~~~Lv~~~H~~Gi~Vil 109 (358)
+...|.+.+|.+.-..+|.+++-= ... ..+.+....| .... +..+=|.+|+++||+-|.++||+||-
T Consensus 16 ~~~~i~~~id~ma~~K~N~lh~Hl-~D~-~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~iv~ya~~rgI~viP 93 (356)
T d1jaka1 16 GVDEVKRYIDRVARYKYNKLHLHL-SDD-QGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 93 (356)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEEC-BCS-SCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEE-ecC-CCcceeecCCchhhhccCccccCCCCCCccCHHHHHHHHHHHHHcCCeEee
Confidence 367888889999999999887742 111 0111111111 0011 12334799999999999999999999
Q ss_pred Ee-ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018278 110 DM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (358)
Q Consensus 110 D~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~ 188 (358)
.+ ++.|+..-... +-.+.. ...... ...........||..+|++.+++.+++.
T Consensus 94 Eid~PgH~~~~~~~----~pel~~---------------~~~~~~-------~~~~~~~~~~~l~~~~~~t~~f~~~v~~ 147 (356)
T d1jaka1 94 EIDMPGHTNAALAS----YAELNC---------------DGVAPP-------LYTGTKVGFSSLCVDKDVTYDFVDDVIG 147 (356)
T ss_dssp ECCCSSSCHHHHHH----CGGGST---------------TSCCCC-------CCCSCCCSCCCCCTTCHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHh----Cccccc---------------cCCCCc-------cccccCCCCcccccCchHHHHHHHHHHH
Confidence 98 78888643110 000000 000000 0000001111288999999999999999
Q ss_pred HHHHh
Q 018278 189 WLKTE 193 (358)
Q Consensus 189 ~w~~~ 193 (358)
..++-
T Consensus 148 E~~~l 152 (356)
T d1jaka1 148 ELAAL 152 (356)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98873
|
| >d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.23 Score=43.49 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=75.5
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccc--------cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe-
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGR--------LYDLDASKYGSQADLKSLIQAFRQKGIKCLADM- 111 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d--------~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~- 111 (358)
+.+.|.+.+|.++...+|.++|- +.+. ..+.+.... .+... ..+=|.+|+++||+-|.++||+||-.+
T Consensus 16 ~~~~lk~~id~ma~~K~N~lhlH-ltD~-~~~r~e~~~~p~l~~~ga~~~~-~~~yT~~d~~elv~yA~~rgI~vIPEiD 92 (362)
T d2gjxa1 16 PLSSILDTLDVMAYNKLNVFHWH-LVDD-PSFPYESFTFPELMRKGSYNPV-THIYTAQDVKEVIEYARLRGIRVLAEFD 92 (362)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEE-CCCS-SCCCBCCSSCTHHHHHHSSCTT-TSCBCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE-EEcC-CCceeccCCCchhhhcCCcCCC-CCccCHHHHHHHHHHHHHcCCEEEeccc
Confidence 37888888999999999999873 1111 112222221 12223 344489999999999999999999998
Q ss_pred ecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 018278 112 VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (358)
Q Consensus 112 V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~ 191 (358)
++.|+..--..... ... .+....... + ..--+|..++++.+++.+++...+
T Consensus 93 ~PGH~~a~~~~~p~-l~~----------------~~~~~~~~~-~-----------~~~~l~~~~~~t~~f~~~v~~E~~ 143 (362)
T d2gjxa1 93 TPGHTLSWGPGIPG-LLT----------------PCYSGSEPS-G-----------TFGPVNPSLNNTYEFMSTFFLEVS 143 (362)
T ss_dssp CSSSCTTTTTTSTT-CEE----------------EEESSSSEE-E-----------EEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHhChh-hcC----------------cccCCCCCC-C-----------cccccCCCcHHHHHHHHHHHHHHH
Confidence 78888653210000 000 000000000 0 001188889999999999999888
Q ss_pred Hhc
Q 018278 192 TEI 194 (358)
Q Consensus 192 ~~~ 194 (358)
+-+
T Consensus 144 ~lF 146 (362)
T d2gjxa1 144 SVF 146 (362)
T ss_dssp HHC
T ss_pred Hhh
Confidence 744
|
| >d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase Cel5a species: Pseudoalteromonas haloplanktis [TaxId: 228]
Probab=93.33 E-value=0.032 Score=47.59 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=34.4
Q ss_pred hhhHH-HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 49 IPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 49 L~yl~-~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
+..|+ ++|+|+|-|.--.+......|. .. + -+..+.++++|+.|+++||+||+|+
T Consensus 44 ~~~l~~~~g~N~VR~~~~~~~~~~~~~~------~~-~-~~~l~~ld~~v~~a~~~gi~vild~ 99 (293)
T d1tvna1 44 VAKAKTEFNATLIRAAIGHGTSTGGSLN------FD-W-EGNMSRLDTVVNAAIAEDMYVIIDF 99 (293)
T ss_dssp HHHHHHHHCCSEEEEEEECCTTSTTSTT------TC-H-HHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCCcEEEEecccccccccccc------cC-c-HHHHHHHHHHHHHHHHcCCEEEecC
Confidence 44555 6899999983111111111111 11 1 1236778899999999999999997
|
| >d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]
Probab=93.05 E-value=0.074 Score=44.75 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCcceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCC
Q 018278 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160 (358)
Q Consensus 81 ~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (358)
.+. ..+-+.++|+.-|++||++|+||++-+==.+.+... .
T Consensus 50 ~~~-~~~~~~~~~~~~i~~~q~~g~kVllSiGG~~~~~~~------------------------~--------------- 89 (282)
T d1eoka_ 50 GMM-GSFKSYKDLDTQIRSLQSRGIKVLQNIDDDVSWQSS------------------------K--------------- 89 (282)
T ss_dssp GGG-TTCSSHHHHHHHHHHHHTTTCEEEEEEECCGGGGSS------------------------S---------------
T ss_pred cee-ecccchhHHHHHHHHHhhcCceEEEEEecCCCCCcc------------------------C---------------
Confidence 355 566678999999999999999999985321110000 0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccC
Q 018278 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (358)
Q Consensus 161 ~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (358)
.-......+++...+...++++|+|||=+|-=
T Consensus 90 ------------~~~~~~~~~~~~~~~~~~i~~yglDGiDiD~E 121 (282)
T d1eoka_ 90 ------------PGGFASAAAYGDAIKSIVIDKWKLDGISLDIE 121 (282)
T ss_dssp ------------GGGSSSHHHHHHHHHHHHTTTTCCCEEEEECC
T ss_pred ------------CccHHHHHHHHHHHHHHHHHHhCCCceeeccc
Confidence 00012366788888888898899999999984
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=92.98 E-value=0.11 Score=44.61 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=40.1
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCC-CCCCCCCCCCccccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEee
Q 018278 43 NSLKNSIPDLSNAGITHVWLPPP-SQSVAPQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 43 ~gl~~~L~yl~~LGv~~I~l~Pi-~~~~~~~gY~~~d~~~id~~~~G--t~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+-..+.++.+|++|+++|-+..+ +. .|. |.=| ..+.+.++|++|+++||+||+.+.
T Consensus 14 ~~~~~D~~~~~~~G~n~vR~~i~~W~-------------~ie-p~~G~~~~~~~d~~i~~~~~~Gi~~iv~l~ 72 (393)
T d1kwga2 14 ERWKEDARRMREAGLSHVRIGEFAWA-------------LLE-PEPGRLEWGWLDEAIATLAAEGLKVVLGTP 72 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTCHH-------------HHC-SBTTBCCCHHHHHHHHHHHTTTCEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEecccchh-------------hcC-CCCCccCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34667799999999999998742 11 111 1101 135788999999999999998874
|
| >d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase Cel5a species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.56 E-value=0.036 Score=47.23 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=38.0
Q ss_pred hhhhhHH-HcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 47 NSIPDLS-NAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 47 ~~L~yl~-~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
+.++.|+ ++|+|.|-+ |+.... ..+ +..+ +. +..+.++++|+.|.++||+||+|+-
T Consensus 42 ~~~~~l~~~~G~N~vR~-~~~~~~-~~~------~~~~-~~-~~~~~ld~vv~~a~~~Giyvild~h 98 (291)
T d1egza_ 42 DTVASLKKDWKSSIVRA-AMGVQE-SGG------YLQD-PA-GNKAKVERVVDAAIANDMYAIIGWH 98 (291)
T ss_dssp HHHHHHHHTTCCCEEEE-EEECSS-TTS------TTTC-HH-HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEE-eccccc-cCC------cccC-cH-HHHHHHHHHHHHHHHCCCeEeeeec
Confidence 4466666 699999998 343221 112 2223 22 2367789999999999999999973
|
| >d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Putative alpha-L-fucosidase, catalytic domain domain: Putative alpha-L-fucosidase, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.19 E-value=0.5 Score=41.04 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=80.0
Q ss_pred hhhhhHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCc
Q 018278 47 NSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (358)
Q Consensus 47 ~~L~yl~~LGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 125 (358)
+-++-+|+.|+..|-|+-=+-- ..-|.-..++|..++ ... ..|=+++|+++||++||++-+=+ |.+.+
T Consensus 103 ~Wv~~ak~aGaky~vlTaKHHDGF~Lw~S~~t~~n~~~-~~~-~rDiv~el~~A~rk~Glk~G~Yy---S~~~d------ 171 (350)
T d1hl9a2 103 EWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVK-RGP-KRDLVGDLAKAVREAGLRFGVYY---SGGLD------ 171 (350)
T ss_dssp HHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTT-STT-CSCHHHHHHHHHHHTTCEECEEE---CCSCC------
T ss_pred HHHHHHHHcCCCEEEEEEEecCCcccCCCCCCCCCCcC-CCC-CCchHHHHHHHHHhcCCceeEEe---ccccc------
Confidence 3456789999999987642110 011111234444455 333 56779999999999999997732 21111
Q ss_pred ceeeccCCCCCCCCCCCCCcccCCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCC
Q 018278 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (358)
|+...... .+. ......+...+...+++...++.+++.||.|++=+|...
T Consensus 172 ---------------w~~~~~~~---~~~------------~~~~~~~~~~~~y~~~~~~Ql~EL~~~Y~p~~~w~D~~~ 221 (350)
T d1hl9a2 172 ---------------WRFTTEPI---RYP------------EDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGW 221 (350)
T ss_dssp ---------------TTSCCSCC---CSG------------GGGGTCSCCSHHHHHHHHHHHHHHHHHHCCSCEEECSCC
T ss_pred ---------------cccccCCC---CCc------------chhcccCccchHHHHHHHHHHHHHHhccCCceEEecccc
Confidence 11000000 000 000013334577889999999999999999999999853
Q ss_pred CC-CH---HHHHHHHHhcCCCeEEEecc
Q 018278 206 GY-AP---SITKVYMENTSPDFAVGEKW 229 (358)
Q Consensus 206 ~i-~~---~~~~~~~~~~~p~~~~gE~~ 229 (358)
.- .. ..+.+.++...|..++...+
T Consensus 222 ~~~~~~~~~~~~~~i~~~qp~~~i~~r~ 249 (350)
T d1hl9a2 222 PEKGKEDLKYLFAYYYNKHPEGSVNDRW 249 (350)
T ss_dssp CGGGTTHHHHHHHHHHHHCTTCCBCSCS
T ss_pred cccchhhHHHHHHHHHHhCCCCccccee
Confidence 32 11 22333455556644444333
|
| >d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Melibiase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=91.63 E-value=0.31 Score=40.66 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=37.9
Q ss_pred hHHHHhhhhh-----HHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 42 YNSLKNSIPD-----LSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 42 ~~gl~~~L~y-----l~~LGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
-+.|.+.++. |+++|++.|.|==-+... ...| + ..+++.+|. ..++.|++.+|++||++-+-+-
T Consensus 25 e~~~~~~~~~~~~~gl~~~G~~~~~iDdGW~~~~~d~~g----~-~~~~~~~fP--~Gl~~~~~~~~~~G~~~Glw~~ 95 (273)
T d1uasa2 25 EQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQG----N-FVPNRQTFP--SGIKALADYVHAKGLKLGIYSD 95 (273)
T ss_dssp HHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCTTS----C-CCBCTTTCT--TCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCchhhCCeEEEEcCCcCCCCCCCCC----C-cccCccccC--CChHHHHHHHHhCCCeEEEecC
Confidence 4555555555 466899988662111111 1122 2 223434554 3588999999999999987543
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.32 E-value=0.0017 Score=60.91 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=43.1
Q ss_pred CCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC
Q 018278 74 YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD 122 (358)
Q Consensus 74 Y~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~ 122 (358)
|.+.++..+. +.+|+.+++++++.++|.+|+++++|+|.||++..|++
T Consensus 89 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 136 (563)
T d2fhfa5 89 KVADIQQPFS-RLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKD 136 (563)
T ss_dssp GCCCTTSBHH-HHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTT
T ss_pred cccccccccc-cccccccccchhhhhhhccccchhhhhhhcccccccch
Confidence 4566677777 88999999999999999999999999999999999873
|
| >d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: TM1410-like domain: Hypothetical protein TM1410 species: Thermotoga maritima [TaxId: 2336]
Probab=89.67 E-value=0.21 Score=42.26 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCC
Q 018278 172 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (358)
Q Consensus 172 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i 207 (358)
+|+.+|+.|+.|.+.+...++ .|+||+=+|.+..+
T Consensus 100 vd~~~~~w~~il~~ri~~~~~-~GfDGvflD~lD~y 134 (285)
T d2aama1 100 VKYWYNEWKEIVFSYLDRVID-QGFKGIYLDRIDSF 134 (285)
T ss_dssp ECTTSHHHHHHHHHHHHHHHH-TTCSEEEEECTTHH
T ss_pred EecCcHHHHHHHHHHHHHHHH-cCCCeEEecccchh
Confidence 788999999999999998887 99999999997765
|
| >d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Glycosyl hydrolases family 35 catalytic domain domain: Beta-galactosidase LacA, N-terminal domain species: Penicillium sp. [TaxId: 5081]
Probab=88.48 E-value=0.73 Score=39.89 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCC--CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 018278 45 LKNSIPDLSNAGITHVWLPPPSQS--VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (358)
Q Consensus 45 l~~~L~yl~~LGv~~I~l~Pi~~~--~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V 112 (358)
..+.|+-+|++|+|+|.+.=.+.. +....|+ | ....++.++++.|+++||+||+..-
T Consensus 38 w~~~l~~mk~~G~n~vr~~~~W~~~ep~~g~~d---f--------~~~~~l~~~l~~a~~~Gl~vil~~g 96 (354)
T d1tg7a5 38 YIDIFEKVKALGFNCVSFYVDWALLEGNPGHYS---A--------EGIFDLQPFFDAAKEAGIYLLARPG 96 (354)
T ss_dssp HHHHHHHHHTTTCCEEEEECCHHHHCSBTTBCC---C--------CGGGCSHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEecchhccCCCCCccc---c--------cchhhHHHHHHHHHHcCCEEEEcCC
Confidence 456789999999999997432211 1111121 1 1344678999999999999998653
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=87.73 E-value=0.011 Score=55.56 Aligned_cols=41 Identities=5% Similarity=0.042 Sum_probs=37.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEeeccCCCCC
Q 018278 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (358)
Q Consensus 167 ~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 208 (358)
..++++|..+|+|++.+.+.+.+|++ ++|||||+|++..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgfr~d~~~~~~ 305 (572)
T d1gjwa2 265 KFTLPPNLIDPQKWEKIKREEGNILE-LIVKEFGIITPPGFS 305 (572)
T ss_dssp TBCCCHHHHCHHHHHHHHTCSSCHHH-HHHHHHSEECCCBCC
T ss_pred ccCCCccccCHHHHHHHHHHhhhHHh-cccceeecccccccc
Confidence 56888999999999999999999997 899999999998764
|
| >d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: beta-Galactosidase, domain 3 species: Escherichia coli [TaxId: 562]
Probab=85.00 E-value=3.6 Score=33.75 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=45.9
Q ss_pred ceEEEeeecCCCCCCC---CchHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 018278 24 ALLFQGFNWESSNKAG---GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (358)
Q Consensus 24 ~v~~q~F~~~~~~~~~---G~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~ 100 (358)
.+.+....|......+ -+-+.+...+..+|++|+|+|-+. +| -.+ .++.+.|
T Consensus 15 ~~~l~G~~~~~~~~~~g~~~~~~~~~~di~l~k~~G~N~iR~~---------~~------p~~----------~~~~~~~ 69 (292)
T d1jz8a5 15 PLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCS---------HY------PNH----------PLWYTLC 69 (292)
T ss_dssp ECCEEEEECCCCBTTTBTCCCHHHHHHHHHHHHHTTCCEEECT---------TS------CCC----------HHHHHHH
T ss_pred EEEEeeeEccCCCCccCCCCCHHHHHHHHHHHHhcCCCEEEec---------CC------CCh----------HHHHHHH
Confidence 3455555543322212 355777788999999999999743 11 123 5678899
Q ss_pred HHcCCEEEEEeecccc
Q 018278 101 RQKGIKCLADMVINHR 116 (358)
Q Consensus 101 H~~Gi~VilD~V~NH~ 116 (358)
.++||.|+.|+.....
T Consensus 70 D~~Gilv~~e~~~~~~ 85 (292)
T d1jz8a5 70 DRYGLYVVDEANIETH 85 (292)
T ss_dssp HHHTCEEEEECSCBCT
T ss_pred hhcCCeEEeeeeeccc
Confidence 9999999999866543
|
| >d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: beta-Glucuronidase, domain 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.23 E-value=1.4 Score=36.56 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=37.5
Q ss_pred chHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 41 ~~~gl~~~L~yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
+-+.+...+..+|++|+|+|-+. +| ..+ +.+.+.|.++||.|+.|+..-
T Consensus 34 ~~~~~~~d~~~~k~~G~N~iR~~---------~~------~~~----------~~~~~~cD~~Gilv~~e~~~~ 82 (304)
T d1bhga3 34 DWPLLVKDFNLLRWLGANAFRTS---------HY------PYA----------EEVMQMCDRYGIVVIDECPGV 82 (304)
T ss_dssp CHHHHHHHHHHHHHHTCCEEECT---------TS------CCS----------STHHHHHSTTCCEEEECCSCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEec---------CC------CCh----------HHHHHHHHhcCCeeeeccccc
Confidence 56788888999999999999972 11 112 246778999999999997543
|
| >d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Hevamine A (chitinase/lysozyme) species: Para rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=83.32 E-value=0.8 Score=38.00 Aligned_cols=59 Identities=14% Similarity=0.024 Sum_probs=38.4
Q ss_pred hHHHcCCCEEEeCCCCCCCCCCCCCcccc-CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 018278 51 DLSNAGITHVWLPPPSQSVAPQGYMPGRL-YDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (358)
Q Consensus 51 yl~~LGv~~I~l~Pi~~~~~~~gY~~~d~-~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~ 111 (358)
|...-.+|+|-|.=+.... ..++-..|+ ...+ +..++.+++++.|+.||++|+||++=+
T Consensus 19 ~c~~~~~~~I~laF~~~~~-~g~~~~~~~~~~~~-~~~~~~~~l~~~I~~~q~~g~KVllSi 78 (273)
T d2hvma_ 19 TCSTRKYSYVNIAFLNKFG-NGQTPQINLAGHCN-PAAGGCTIVSNGIRSCQIQGIKVMLSL 78 (273)
T ss_dssp HHHTSCCSEEEEEEEEECS-TTCCCEECCGGGCC-CGGGTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred HcCCCCCCEEEEEEEeEEC-CCCeeeccccccCC-CccCchhhHHHHHHHHHhCCCEEEEEE
Confidence 3344568988874332221 223333332 2345 667778899999999999999999985
|
| >d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial beta-amylase species: Bacillus cereus [TaxId: 1396]
Probab=81.30 E-value=1.2 Score=39.12 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=49.2
Q ss_pred CCchHHHHhhhhhHHHcCCCEEEeCCCC----CCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 018278 39 GGWYNSLKNSIPDLSNAGITHVWLPPPS----QSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (358)
Q Consensus 39 ~G~~~gl~~~L~yl~~LGv~~I~l~Pi~----~~~~~~gY~~~d~~~id~~~~Gt~~d~~~Lv~~~H~~Gi~VilD~V~N 114 (358)
..+.+.+.+.|..||++||+.|-+ +++ |..+..-|+ .+.+++|++.+++.|+||.+=+.+.
T Consensus 25 ~~~~~~~~~~L~~LK~aGV~gV~v-dVwWGivE~~~Pg~Yd--------------ws~yd~l~~mv~~~GLKi~vvmsfH 89 (417)
T d1vema2 25 VTNWETFENDLRWAKQNGFYAITV-DFWWGDMEKNGDQQFD--------------FSYAQRFAQSVKNAGMKMIPIISTH 89 (417)
T ss_dssp TSCHHHHHHHHHHHHHTTEEEEEE-EEEHHHHTCSSTTCCC--------------CHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE-eeeeeeeecCCCCccC--------------cHHHHHHHHHHHHcCCeEEEEEEec
Confidence 357899999999999999999977 554 221111222 3457899999999999988888777
Q ss_pred ccccc
Q 018278 115 HRTAE 119 (358)
Q Consensus 115 H~~~~ 119 (358)
-++.+
T Consensus 90 ~cGgn 94 (417)
T d1vema2 90 QCGGN 94 (417)
T ss_dssp CBSSS
T ss_pred ccCCC
Confidence 66654
|