Citrus Sinensis ID: 018279

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
cccccccccHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccEEEcccccccccEEEccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEccccEEEEEEccHHHHHHcccccccccEEcccccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEEccccccEEEEEEEEccccccccccEEEEcccEEEEEccccEEEEEEcccccccEEEEEEEEEccccccccccccccccEEEEEEccEEEEccEEEEEEEEEEcccccccccEEEEEEEccEEEEEc
cccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHcccEcccccccEEcccEEEHEHHHHHEEEEcccccEEEEHEEEEEEEEEEEccccccEcccccEEEEEcccccccccEEEEEccEEEEEEEEcccccccEEEEccccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEcccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEcccccccccEEEEEEccccEEEEEc
mtasrqncNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMmdfgypqyteanILSEFIKtdayrmevtqrppmavTNAVSWRsegiqykknevFLDVVEHVNILVNSNGQIIRSDVVGALKMRTylsgmpecklglndrILLEAqgrstkgkaidlddikfhQCVRLArfendrtisfippdgsfdlmTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQfkerstatnveielpvssdasnpdvrtsmgsasyvpedEALIWKIrsfpggkeymlraeftlpsitaeeatperkapirvkfeipyftvsGIQVRYLKIIEKsgyhalpwVRYITMAGEYELRLI
MTASRQNCNAASLLFFLHRVVDVFKHYFeeleeeslrdNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILvnsngqiirsdVVGALKMRTYLSGMPECKLGLNDRILLEAQGRstkgkaidlddiKFHQCVRLarfendrtisfippdgsFDLMTYRLNTQVKPLIWVEAqverhsrsrvEILVKarsqfkerstatnveielpvssdasnpdvRTSMGsasyvpedeaLIWKIRSFPGGKEYMLRAEFTlpsitaeeatperkapirvkfeipyftvsgIQVRYLKIIEKsgyhalpwvrYITMAGEYELRLI
MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
*******CNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILV******************************************DEALIWKIRSFPGGKEYMLRAEFTLPSITA*******KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYEL***
MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYR*********************IQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLN******************LDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEF**************KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
********NAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
**ASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAY****TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
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oooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query358 2.2.26 [Sep-21-2011]
P35602422 AP-1 complex subunit mu-1 yes no 0.988 0.838 0.633 1e-142
Q32Q06423 AP-1 complex subunit mu-1 yes no 0.986 0.834 0.633 1e-141
Q9BXS5423 AP-1 complex subunit mu-1 yes no 0.986 0.834 0.630 1e-141
Q2KJ81423 AP-1 complex subunit mu-1 yes no 0.986 0.834 0.630 1e-141
P35585423 AP-1 complex subunit mu-1 yes no 0.986 0.834 0.630 1e-140
Q3SYW1423 AP-1 complex subunit mu-2 no no 0.986 0.834 0.633 1e-139
Q9Y6Q5423 AP-1 complex subunit mu-2 no no 0.986 0.834 0.630 1e-138
Q9WVP1423 AP-1 complex subunit mu-2 no no 0.986 0.834 0.630 1e-137
Q54HS9428 AP-1 complex subunit mu O yes no 0.988 0.827 0.610 1e-135
Q9HFE5426 AP-1 complex subunit mu-1 yes no 0.994 0.835 0.564 1e-126
>sp|P35602|AP1M_CAEEL AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2 Back     alignment and function desciption
 Score =  504 bits (1298), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 226/357 (63%), Positives = 291/357 (81%), Gaps = 3/357 (0%)

Query: 1   MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE 60
           ++A R N N   +L FL++ V+VF  YF+++EEES+RDNFVV+YELLDEMMDFG+PQ TE
Sbjct: 68  VSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQTTE 127

Query: 61  ANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQ 120
           + IL E+I  +  ++    RPPMAVTNAVSWRSEGI+Y+KNEVFLDV+E VN+L ++NG 
Sbjct: 128 SRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNMLASANGT 187

Query: 121 IIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARF 180
           +++S++VG++KMR YL+GMPE +LGLND++L E  GR  K K+++L+D+KFHQCVRL+RF
Sbjct: 188 VLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRG-KSKSVELEDVKFHQCVRLSRF 246

Query: 181 ENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTA 240
           + DRTISFIPPDG+F+LM+YRL T VKPLIW+E  +ERHS SRV  ++KA+SQFK RSTA
Sbjct: 247 DTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAKSQFKRRSTA 306

Query: 241 TNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITA 300
            NVEI +PV SDA +P  +TS+GS  Y PE  A +W I++FPGGKEY+L A  +LPS+ +
Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSLPSVMS 366

Query: 301 EEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRL 357
           EE+  E + PI+VKFEIPYFT SGIQVRYLKIIEKSGY ALPWVRYIT  GEYE+R+
Sbjct: 367 EES--EGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMRM 421
Required for many aspects of development and behavior, including negative regulation of vulval differentiation.
Caenorhabditis elegans (taxid: 6239)
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|Q3SYW1|AP1M2_BOVIN AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Y6Q5|AP1M2_HUMAN AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4 Back     alignment and function description
>sp|Q9WVP1|AP1M2_MOUSE AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3 Back     alignment and function description
>sp|Q54HS9|AP1M_DICDI AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1 Back     alignment and function description
>sp|Q9HFE5|AP1M1_SCHPO AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apm1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
225470599428 PREDICTED: AP-1 complex subunit mu-1 [Vi 1.0 0.836 0.932 0.0
224107797428 predicted protein [Populus trichocarpa] 1.0 0.836 0.930 0.0
297843902428 clathrin adaptor complexes medium subuni 1.0 0.836 0.924 0.0
15219810428 AP-1 complex subunit mu [Arabidopsis tha 1.0 0.836 0.921 0.0
297837421428 clathrin adaptor complexes medium subuni 1.0 0.836 0.921 0.0
356497456428 PREDICTED: AP-1 complex subunit mu-1-lik 1.0 0.836 0.924 0.0
449434961428 PREDICTED: AP-1 complex subunit mu-1-lik 1.0 0.836 0.924 0.0
356526771428 PREDICTED: AP-1 complex subunit mu-1-I-l 1.0 0.836 0.921 0.0
356567664428 PREDICTED: AP-1 complex subunit mu-1-I-l 1.0 0.836 0.921 0.0
413951036 632 hypothetical protein ZEAMMB73_283352 [Ze 1.0 0.566 0.902 0.0
>gi|225470599|ref|XP_002274463.1| PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera] gi|296083422|emb|CBI23375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/358 (93%), Positives = 349/358 (97%)

Query: 1   MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE 60
           MTASRQNCNAAS L FLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE
Sbjct: 71  MTASRQNCNAASHLLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE 130

Query: 61  ANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQ 120
           A ILSEFIKTDAYRMEV+QRPPMAVTNAVSWRSEGI+YKKNEVFLDVVE VNILVNSNGQ
Sbjct: 131 AKILSEFIKTDAYRMEVSQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQ 190

Query: 121 IIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARF 180
           IIRSDVVGALKMRTYLSGMPECKLGLNDR+LLEAQGRSTKGKAIDLDDIKFHQCVRLARF
Sbjct: 191 IIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARF 250

Query: 181 ENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTA 240
           ENDRTISFIPPDGSFDLMTYRL+TQVKPLIWVEAQVERHSRSR+EI+VKARSQFKERSTA
Sbjct: 251 ENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVERHSRSRIEIMVKARSQFKERSTA 310

Query: 241 TNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITA 300
           TNVEIELPV SDA+NP++RTSMGSA+Y PE++AL+WKI+SFPGGKEYMLRAEF+LPSITA
Sbjct: 311 TNVEIELPVPSDATNPNIRTSMGSAAYAPENDALLWKIKSFPGGKEYMLRAEFSLPSITA 370

Query: 301 EEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI 358
           EE  PERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGY ALPWVRYITMAGEYELRLI
Sbjct: 371 EEGAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107797|ref|XP_002314604.1| predicted protein [Populus trichocarpa] gi|222863644|gb|EEF00775.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297843902|ref|XP_002889832.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297335674|gb|EFH66091.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219810|ref|NP_176277.1| AP-1 complex subunit mu [Arabidopsis thaliana] gi|2462748|gb|AAB71967.1| putative Clathrin Coat Assembly protein [Arabidopsis thaliana] gi|20466372|gb|AAM20503.1| clathrin adaptor medium chain protein MU1B, putative [Arabidopsis thaliana] gi|25084014|gb|AAN72155.1| clathrin adaptor medium chain protein MU1B, putative [Arabidopsis thaliana] gi|332195610|gb|AEE33731.1| AP-1 complex subunit mu [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297837421|ref|XP_002886592.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297332433|gb|EFH62851.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356497456|ref|XP_003517576.1| PREDICTED: AP-1 complex subunit mu-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449434961|ref|XP_004135264.1| PREDICTED: AP-1 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356526771|ref|XP_003531990.1| PREDICTED: AP-1 complex subunit mu-1-I-like [Glycine max] Back     alignment and taxonomy information
>gi|356567664|ref|XP_003552037.1| PREDICTED: AP-1 complex subunit mu-1-I-like [Glycine max] Back     alignment and taxonomy information
>gi|413951036|gb|AFW83685.1| hypothetical protein ZEAMMB73_283352 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
TAIR|locus:2036606428 HAP13 "HAPLESS 13" [Arabidopsi 1.0 0.836 0.921 7.3e-178
TAIR|locus:2019913428 AT1G10730 [Arabidopsis thalian 1.0 0.836 0.877 1.1e-167
FB|FBgn0024833426 AP-1mu "Adaptor Protein comple 0.986 0.828 0.647 1e-130
UNIPROTKB|Q2KJ81423 AP1M1 "AP-1 complex subunit mu 0.983 0.832 0.636 5.9e-128
UNIPROTKB|J9P1I0423 AP1M1 "Uncharacterized protein 0.983 0.832 0.636 5.9e-128
UNIPROTKB|Q9BXS5423 AP1M1 "AP-1 complex subunit mu 0.983 0.832 0.636 5.9e-128
UNIPROTKB|F2Z5I7423 AP1M1 "Uncharacterized protein 0.983 0.832 0.636 5.9e-128
RGD|1307653423 Ap1m1 "adaptor-related protein 0.983 0.832 0.639 5.9e-128
MGI|MGI:102776423 Ap1m1 "adaptor-related protein 0.983 0.832 0.636 7.6e-128
WB|WBGene00006829422 unc-101 [Caenorhabditis elegan 0.988 0.838 0.633 1.6e-127
TAIR|locus:2036606 HAP13 "HAPLESS 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1727 (613.0 bits), Expect = 7.3e-178, P = 7.3e-178
 Identities = 330/358 (92%), Positives = 348/358 (97%)

Query:     1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE 60
             M ASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE
Sbjct:    71 MIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE 130

Query:    61 ANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQ 120
             A ILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDV+E+VNILVNSNGQ
Sbjct:   131 ARILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVIENVNILVNSNGQ 190

Query:   121 IIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARF 180
             I+RSDVVGALKMRTYL+GMPECKLGLNDR+LLEAQGR+TKGKAIDL+DIKFHQCVRLARF
Sbjct:   191 IVRSDVVGALKMRTYLTGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARF 250

Query:   181 ENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTA 240
             ENDRTISFIPPDG+FDLMTYRL+TQVKPLIWVEAQ+E HSRSRVE+L+KARSQFKERSTA
Sbjct:   251 ENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQIESHSRSRVEMLIKARSQFKERSTA 310

Query:   241 TNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITA 300
             TNVEIELPV +DASNP VRTS+GSASY PE +AL+WKI+SFPG KEYMLRAEF LPSITA
Sbjct:   311 TNVEIELPVPTDASNPTVRTSLGSASYAPEKDALVWKIKSFPGNKEYMLRAEFHLPSITA 370

Query:   301 EEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI 358
             EEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGY ALPWVRYITMAGEYELRL+
Sbjct:   371 EEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLV 428
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2019913 AT1G10730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0024833 AP-1mu "Adaptor Protein complex 1, mu subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ81 AP1M1 "AP-1 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1I0 AP1M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXS5 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5I7 AP1M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307653 Ap1m1 "adaptor-related protein complex 1, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:102776 Ap1m1 "adaptor-related protein complex AP-1, mu subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00006829 unc-101 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35585AP1M1_MOUSENo assigned EC number0.63020.98600.8345yesno
Q54HS9AP1M_DICDINo assigned EC number0.61040.98880.8271yesno
P35602AP1M_CAEELNo assigned EC number0.63300.98880.8388yesno
Q32Q06AP1M1_RATNo assigned EC number0.63300.98600.8345yesno
Q9BXS5AP1M1_HUMANNo assigned EC number0.63020.98600.8345yesno
Q2KJ81AP1M1_BOVINNo assigned EC number0.63020.98600.8345yesno
Q9HFE5AP1M1_SCHPONo assigned EC number0.56420.99440.8356yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 0.0
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 1e-160
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-146
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 1e-118
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 1e-93
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 3e-84
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 2e-76
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 2e-58
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 2e-34
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 3e-33
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 4e-28
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 2e-17
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 3e-16
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 5e-09
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information 
 Score =  511 bits (1319), Expect = 0.0
 Identities = 197/268 (73%), Positives = 235/268 (87%), Gaps = 1/268 (0%)

Query: 86  TNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLG 145
           TNAVSWR EGI+YKKNEVFLDV+E VN+LV+ NGQ++RS++VG +KMR+YLSGMPE KLG
Sbjct: 1   TNAVSWRPEGIKYKKNEVFLDVIESVNLLVDLNGQVLRSEIVGTIKMRSYLSGMPELKLG 60

Query: 146 LNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQ 205
           LND++L EA GRS+KGKA++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRL+TQ
Sbjct: 61  LNDKVLFEATGRSSKGKAVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLSTQ 120

Query: 206 VKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSA 265
           VKPLIWVE  VERHSRSRVEI+VKA++QFK RSTA NVEI +PV  DA +P  + S GS 
Sbjct: 121 VKPLIWVEPTVERHSRSRVEIMVKAKTQFKRRSTANNVEIRIPVPPDADSPRFKCSAGSV 180

Query: 266 SYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATP-ERKAPIRVKFEIPYFTVSG 324
            Y PE +AL+WKI+SFPGGKE+ +RAEF LPSI +EE    E+KAPI+VKFEIPYFTVSG
Sbjct: 181 VYAPEKDALLWKIKSFPGGKEFSMRAEFGLPSIESEEEQGTEKKAPIQVKFEIPYFTVSG 240

Query: 325 IQVRYLKIIEKSGYHALPWVRYITMAGE 352
           +QVRYLKIIEKSGY ALPWVRYIT +G+
Sbjct: 241 LQVRYLKIIEKSGYQALPWVRYITQSGD 268

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 1 (AP-1) medium mu1 subunit, which includes two closely related homologs, mu1A (encoded by ap1m1) and mu1B (encoded by ap1m2). Mu1A is ubiquitously expressed, but mu1B is expressed exclusively in polarized epithelial cells. AP-1 has been implicated in bi-directional transport between the trans-Golgi network (TGN) and endosomes. It plays an essential role in the formation of clathrin-coated vesicles (CCVs) from the trans-Golgi network (TGN). Epithelial cell-specific AP-1 is also involved in sorting to the basolateral surface of polarized epithelial cells. Recruitment of AP-1 to the TGN membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1). Phosphorylation/dephosphorylation events can also regulate the function of AP-1. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-1. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-1 mu1 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 268
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 358
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.41
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.2
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 97.56
KOG0934145 consensus Clathrin adaptor complex, small subunit 97.52
KOG0935143 consensus Clathrin adaptor complex, small subunit 97.35
KOG3343175 consensus Vesicle coat complex COPI, zeta subunit 96.49
KOG0936182 consensus Clathrin adaptor complex, small subunit 96.45
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 87.08
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=9.8e-94  Score=648.55  Aligned_cols=353  Identities=44%  Similarity=0.783  Sum_probs=325.2

Q ss_pred             CeeecCCCChHHHHHHHHHHHHHHHHHhhccchHHHHhcHHHHHHHHHHHhcCCeeeecChHHHHHhhcccccccccc--
Q 018279            1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVT--   78 (358)
Q Consensus         1 v~vt~~~~n~~~~l~~L~~~~~~l~~y~~~l~e~~I~~n~~~i~elldE~id~G~p~~t~~~~Lk~~i~~~s~~~~~~--   78 (358)
                      |++|++|.|.+.++|||.++.+++..|||.++|+.|++||.+|||+||||+||||||+|+++.|+.+|..++...+-.  
T Consensus        65 vaitksN~Nva~v~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g~~l  144 (446)
T KOG0938|consen   65 VAITKSNANVAAVFEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMGGVL  144 (446)
T ss_pred             EEEecCCCchhhHHHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhcccccc
Confidence            689999999999999999999999999999999999999999999999999999999999999999998887655421  


Q ss_pred             -------CCCC----CccccccccccCCcccccceEEEEEEEeEEEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEec
Q 018279           79 -------QRPP----MAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLN  147 (358)
Q Consensus        79 -------~~~~----~~~~~~~~wr~~~~~~~~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln  147 (358)
                             ++++    ++.++.++||+.|++|++||+|+||.|.+|.+++++|++++++|.|.|.|+++|||||+|+++||
T Consensus       145 s~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlN  224 (446)
T KOG0938|consen  145 SSKSSPTSQATELRSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLN  224 (446)
T ss_pred             CCcCCCCcccccccccccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccC
Confidence                   1111    34467899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhh-hcCC-------C-----CCCceeeeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCC-CCcEEEE
Q 018279          148 DRILLE-AQGR-------S-----TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV-KPLIWVE  213 (358)
Q Consensus       148 ~~~~~~-~~~~-------~-----~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~f~Ll~Y~~~~~~-~P~~~v~  213 (358)
                      |...++ .++.       .     +....+.|+||+||+||++++|+++++|+|+||||+|+||+||+..++ +|| .+.
T Consensus       225 Dkl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPF-rV~  303 (446)
T KOG0938|consen  225 DKLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPF-RVT  303 (446)
T ss_pred             cccceeeccccccccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccce-Eee
Confidence            998876 2221       1     244668999999999999999999999999999999999999999887 777 467


Q ss_pred             EEEEEccceEEEEEEEeeecCCCcceeeeEEEEecCCCCCCCceEEecceeEEEeCCCcEEEEEecccCCCceeEEEEEE
Q 018279          214 AQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEF  293 (358)
Q Consensus       214 ~~~~~~~~~~~e~~l~~~~~~~~~~~~~~v~i~iP~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~  293 (358)
                      |.++..+.+++||++.+++.|+++..+.+|.++||+|+++..+.++++.|+|+|.+++++++|+|+++.|.+|.+|++++
T Consensus       304 PiV~el~r~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAev  383 (446)
T KOG0938|consen  304 PIVTELGRTKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEV  383 (446)
T ss_pred             eheecccceeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEecCccccCcccceEEEEecccCCcccceeEEEE
Confidence            99998888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCC-CCCCCCCCCCceEEEEEECccccccceEEEEEEee-cCCCccccceEEEEEeCcEEEE
Q 018279          294 TLPSIT-AEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYHALPWVRYITMAGEYELR  356 (358)
Q Consensus       294 ~~~~~~-~~~~~~~~~~pi~v~F~i~~~s~SGl~V~~l~v~~-~~~~~~~k~vrY~t~sg~Y~~r  356 (358)
                      ++.+.. +...|  ..+||+|+|++|||+.|||.|++++|.+ +++|+..|||||+|+||+||+|
T Consensus       384 els~Tt~nkq~W--trPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  384 ELSDTTQNKQQW--TRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSYEIR  446 (446)
T ss_pred             EeccCccccccc--cCCCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEecccceeeeC
Confidence            998765 45578  8999999999999999999999999999 5899999999999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-142
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-111
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-108
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-79
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 4e-78
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 8e-60
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 9e-60
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-58
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-58
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-56
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 2e-53
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 4e-30
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 6e-30
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure 
Iteration: 1

 Score =  500 bits (1287), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 225/357 (63%), Positives = 294/357 (82%), Gaps = 4/357 (1%)
Query: 1   MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE 60
           +  S++N   + +  FL++VV VF  YF+ELEEES+RDNFV++YELLDE+MDFGYPQ T+
Sbjct: 68  VATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTD 127
Query: 61  ANILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNG 119
           + IL EFI  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+E VN+LV++NG
Sbjct: 128 SKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANG 187
Query: 120 QIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLAR 179
            ++RS++VG++KMR +LSGMPE +LGLND++L +  GR  K K+++L+D+KFHQCVRL+R
Sbjct: 188 NVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFHQCVRLSR 246
Query: 180 FENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERST 239
           FENDRTISFIPPDG F+LM+YRLNT VKPLIW+E+ +E+HS SR+E +VKA+SQFK RST
Sbjct: 247 FENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRST 306
Query: 240 ATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSIT 299
           A NVEI +PV +DA +P  +T++GS  +VPE+  ++W ++SFPGGKEY++RA F LPS+ 
Sbjct: 307 ANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVE 366
Query: 300 AEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 356
           AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGY A+PWVRYIT  G+Y+LR
Sbjct: 367 AEDK--EGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQLR 421
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-110
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 1e-109
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 1e-101
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 2e-97
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 1e-96
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 2e-96
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 5e-17
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 6e-15
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
 Score =  327 bits (838), Expect = e-110
 Identities = 224/357 (62%), Positives = 293/357 (82%), Gaps = 4/357 (1%)

Query: 1   MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE 60
           +  S++N   + +  FL++VV VF  YF+ELEEES+RDNFV++YELLDE+MDFGYPQ T+
Sbjct: 68  VATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTD 127

Query: 61  ANILSEFIKTDAYRMEVTQR-PPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNG 119
           + IL EFI  + +++E     PP  VTNAVSWRSEGI+Y+KNEVFLDV+E VN+LV++NG
Sbjct: 128 SKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANG 187

Query: 120 QIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLAR 179
            ++RS++VG++KMR +LSGMPE +LGLND++L +  GR  K K+++L+D+KFHQCVRL+R
Sbjct: 188 NVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFHQCVRLSR 246

Query: 180 FENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERST 239
           FENDRTISFIPPDG F+LM+YRLNT VKPLIW+E+ +E+HS SR+E +VKA+SQFK RST
Sbjct: 247 FENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRST 306

Query: 240 ATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSIT 299
           A NVEI +PV +DA +P  +T++GS  +VPE+  ++W ++SFPGGKEY++RA F LPS+ 
Sbjct: 307 ANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVE 366

Query: 300 AEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 356
           AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGY A+PWVRYIT  G+Y+LR
Sbjct: 367 AED--KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQLR 421
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.67
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.64
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.56
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.01
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
Probab=100.00  E-value=6.6e-88  Score=665.04  Aligned_cols=355  Identities=63%  Similarity=1.135  Sum_probs=308.0

Q ss_pred             CeeecCCCChHHHHHHHHHHHHHHHHHhhccchHHHHhcHHHHHHHHHHHhcCCeeeecChHHHHHhhccccccccccC-
Q 018279            1 MTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQ-   79 (358)
Q Consensus         1 v~vt~~~~n~~~~l~~L~~~~~~l~~y~~~l~e~~I~~n~~~i~elldE~id~G~p~~t~~~~Lk~~i~~~s~~~~~~~-   79 (358)
                      +|+++.|.|++++++|||+|.++|++|||.++|+.|++||+.||++||||+|+|+||+|++++|++++.+++++...++ 
T Consensus        68 v~~~~~~~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~  147 (423)
T 1w63_M           68 VATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAP  147 (423)
T ss_dssp             EEEESSCCCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC--
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcccccccc
Confidence            5889999999999999999999999999999999999999999999999999999999999999999999998743222 


Q ss_pred             CCCCccccccccccCCcccccceEEEEEEEeEEEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCCC
Q 018279           80 RPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST  159 (358)
Q Consensus        80 ~~~~~~~~~~~wr~~~~~~~~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~  159 (358)
                      .+|++.+++++||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..++..++ +
T Consensus       148 ~~~~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~-~  226 (423)
T 1w63_M          148 RPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-G  226 (423)
T ss_dssp             ---------CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC---------
T ss_pred             CCcccccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc-c
Confidence            345566778999999999999999999999999999999999999999999999999999999999999876544332 2


Q ss_pred             CCceeeeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeecCCCcce
Q 018279          160 KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERST  239 (358)
Q Consensus       160 ~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~f~Ll~Y~~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~  239 (358)
                      ...++.++||+|||||++++|+++|+|+|+||||+|+||+||++.+..||+.+.|+++..+++++||+++++++|+.+..
T Consensus       227 ~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~  306 (423)
T 1w63_M          227 KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRST  306 (423)
T ss_dssp             -----CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSE
T ss_pred             ccCceEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcce
Confidence            34567899999999999999999999999999999999999998877666678899987667899999999999998888


Q ss_pred             eeeEEEEecCCCCCCCceEEecceeEEEeCCCcEEEEEecccCCCceeEEEEEEEecCCCCCCCCCCCCCceEEEEEECc
Q 018279          240 ATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPY  319 (358)
Q Consensus       240 ~~~v~i~iP~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~i~~  319 (358)
                      +++|.|+||+|+++.+++++++.|+++|++++++++|+|++++|+++++++|++++++......+  .++||+|+|++|+
T Consensus       307 ~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~--~~~pi~v~F~i~~  384 (423)
T 1w63_M          307 ANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKE--GKPPISVKFEIPY  384 (423)
T ss_dssp             EESCEEEEECCTTCCCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC------------CCCEEEEBCCSS
T ss_pred             eeEEEEEEeCCCCcccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCccccc--CCCcEEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999765422234  7999999999999


Q ss_pred             cccccceEEEEEEeecCCCccccceEEEEEeCcEEEEeC
Q 018279          320 FTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI  358 (358)
Q Consensus       320 ~s~SGl~V~~l~v~~~~~~~~~k~vrY~t~sg~Y~~r~~  358 (358)
                      +++||++|+++++.++.+|+|+|||||+|+||+|++|+.
T Consensus       385 ~t~Sgl~V~~l~v~~~~~y~~~kwVrY~t~sg~y~~R~~  423 (423)
T 1w63_M          385 FTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQLRTQ  423 (423)
T ss_dssp             CCTTCCCEEEEEEECSSCCCCEEEEEEEEEBSCEEECCC
T ss_pred             EeCCCCEEEEEEeEccCCCCCcCceEEEEeCCcEEEecC
Confidence            999999999999998778999999999999999999974
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 358
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 1e-101
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 4e-18
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 1e-12
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  298 bits (763), Expect = e-101
 Identities = 112/279 (40%), Positives = 169/279 (60%), Gaps = 14/279 (5%)

Query: 89  VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLND 148
           + WR EGI+Y++NE+FLDV+E VN+L++  GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 149 RILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 201
           +I++E QG+        +  ++I +DD  FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 202 LNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTS 261
               +     V   V    R+++E+ V  +S FK    A  +E+ +P   + S   V   
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 262 MGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT 321
            G A Y   + A++WKI+   G KE  + AE  L     ++     + PI + FE+P F 
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK--KWARPPISMNFEVP-FA 237

Query: 322 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELR 356
            SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct: 238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 99.76
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.52
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-67  Score=489.96  Aligned_cols=265  Identities=42%  Similarity=0.811  Sum_probs=232.1

Q ss_pred             cccccCCcccccceEEEEEEEeEEEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcC-------CCCCC
Q 018279           89 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQG-------RSTKG  161 (358)
Q Consensus        89 ~~wr~~~~~~~~neI~vdV~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~-------~~~~~  161 (358)
                      +|||+.|++|++|||||||+|+++++++++|.++.++|+|+|.|+|+|+|+|+|+|+||++...+.+.       +.+..
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            58999999999999999999999999999999999999999999999999999999999987654321       11356


Q ss_pred             ceeeeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeecCCCcceee
Q 018279          162 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTAT  241 (358)
Q Consensus       162 ~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~f~Ll~Y~~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~  241 (358)
                      .++.|+||+||+||+++.|+++|.|+|+||||+|+||+||++.+..+|+.+.++++..+++++++.++++++++.+..++
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~  160 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ  160 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeee
Confidence            78899999999999999999999999999999999999999877655556678888777789999999999999988999


Q ss_pred             eEEEEecCCCCCCCceEEecceeEEEeCCCcEEEEEecccCCCceeEEEEEEEecCCCCCCCCCCCCCceEEEEEECccc
Q 018279          242 NVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT  321 (358)
Q Consensus       242 ~v~i~iP~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~s  321 (358)
                      +|.|+||+|.++..++++++.|+++|+.+++.++|+|++++++++++|+|++++.+..+...+  .++||+|+|++| ++
T Consensus       161 ~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~--~~~pi~v~F~ip-~t  237 (277)
T d2pr9a1         161 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FA  237 (277)
T ss_dssp             EEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCC--CCCCEEEEEEES-SC
T ss_pred             EEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccCCCCccc--cCCcEEEEEEec-cc
Confidence            999999999999999999999999999999999999999999999999999999876554444  789999999999 89


Q ss_pred             cccceEEEEEEeec----CCCccccceEEEEEeCcEEEE
Q 018279          322 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELR  356 (358)
Q Consensus       322 ~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~r  356 (358)
                      +||++|++|+|.+.    ++|+|+|||||+|+||+|++|
T Consensus       238 ~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R  276 (277)
T d2pr9a1         238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR  276 (277)
T ss_dssp             TTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEEC
T ss_pred             ccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEEC
Confidence            99999999999873    358999999999999999999