Citrus Sinensis ID: 018289

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36

MRIAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAGNSSEMLKFIVL

cEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccHHHHHcccccccccccccccccEEEEcccccHHHHHHHHHcccEEcccEEEEccccEEEEccEEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEccccccccccccHHHHHHcccccHHcccccccccHHHHHHHHHHcccEEEEcccccccEEEEEccccccccEEEcccccccccccEEEEEcccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcc

cEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEccHHHEccHHHHHHccccHHHHHHccHHHHccccccccEEEEEEccccHHHHHHHHccccccccccEEEEccccEEEEccEEEEEEcccEcccccccccccccccccccEEEEEEEEEcEHHHHHHHcccccEEEEccccccccccccHHHHHHHcHHHHHHHHccccccHHHHHHHHHccccHHHHHHEEEEEEEEcccccccccEEEEEHccccccccEEEEEEccccccccEEcccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccEEccccccccccccccccccccHHHHHHHcc

mriavegcmhgeldNVYKTLQYMENINSYKIDLLLCCGdfqavrnendmeslnvprkyREMKSFWKYysgqevapiptifiggnheaSNYLWELyyggwaapniYFLGFAGVvkfgnirigglsgiynarhyrlghyerppynestirsvyhvreydvhklmqieepidiflshdwpcgitdygnckelvRHKQYFEKeiqdgtlgsePAAQLLEKLkpsywfsahLHCKFAAVvqhgedspvtkflaldkclprrkfLQVFEiesgqgpyeiqyDEEWLAITRTFNsvfpltsqsanfggvqhdmndCRQWVRSRLqergakpfefvrtvpcydasqslsigafagnsSEMLKFIVL

mriavegcmhgeLDNVYKTLQYMENINSYKIDLLLCCGDFQAVrnendmeslnvprKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHyerppynestiRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLPRRKFLQVFeiesgqgpyEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLsigafagnssEMLKFIVL

***AVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAG***********

MRIAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSP*********CLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNS************************VRSRLQERGAKPFEFVRTV*****************SSEMLKFIVL

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		358	2.2.26 [Sep-21-2011]
Q94K01		418	Lariat debranching enzyme	yes	no	0.946	0.811	0.764	1e-160
Q6AU07		407	Lariat debranching enzyme	yes	no	0.941	0.828	0.738	1e-150
Q6P886		534	Lariat debranching enzyme	yes	no	0.935	0.627	0.538	1e-109
Q6GPB8		534	Lariat debranching enzyme	N/A	no	0.941	0.631	0.542	1e-109
Q7T3E4		568	Lariat debranching enzyme	yes	no	0.935	0.589	0.536	1e-107
Q7ZWU9		533	Lariat debranching enzyme	N/A	no	0.935	0.628	0.532	1e-106
Q9UK59		544	Lariat debranching enzyme	yes	no	0.932	0.613	0.525	1e-105
Q923B1		550	Lariat debranching enzyme	yes	no	0.932	0.607	0.519	1e-104
Q5ZLM2		536	Lariat debranching enzyme	yes	no	0.944	0.630	0.508	1e-102
Q9VSD7		534	Lariat debranching enzyme	yes	no	0.930	0.623	0.457	5e-98

>sp\|Q94K01\|DBR1_ARATH Lariat debranching enzyme OS=Arabidopsis thaliana GN=DBR1 PE=2 SV=1	Back alignment and function desciption

 Score =  565 bits (1455), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/340 (76%), Positives = 294/340 (86%), Gaps = 1/340 (0%)

Query: 1   MRIAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYRE 60
           M+IA+EGCMHG+LDNVYKT+Q+ E I++ K+DLLLCCGDFQAVRNE DM+SLNVPRKYRE
Sbjct: 1   MKIAIEGCMHGDLDNVYKTIQHYEQIHNTKVDLLLCCGDFQAVRNEKDMDSLNVPRKYRE 60

Query: 61  MKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRI 120
           MKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAA NIYFLGFAGVVKFGN+RI
Sbjct: 61  MKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAATNIYFLGFAGVVKFGNVRI 120

Query: 121 GGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGI 180
           GGLSGIYN RHYR GH+ERPPYNESTIRSVYHVR+YDV KLMQ+EEP+DIFLSHDWP GI
Sbjct: 121 GGLSGIYNERHYRSGHFERPPYNESTIRSVYHVRDYDVQKLMQLEEPLDIFLSHDWPVGI 180

Query: 181 TDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGED 240
           TDYG+ + L+R K YF +EI++ TLGS+PAA LLEKLKP YWFSAHLHCKFAA VQHG D
Sbjct: 181 TDYGDSESLMRQKPYFRQEIEEKTLGSKPAALLLEKLKPQYWFSAHLHCKFAAAVQHGND 240

Query: 241 SPVTKFLALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFG 300
             VTKFLALDKCLP +KFLQ+ EIES  GP+E+ YDEEWLAITR FNS+FPLT +  N  
Sbjct: 241 GSVTKFLALDKCLPGKKFLQIIEIESEPGPFEVLYDEEWLAITRKFNSIFPLTRRYTNV- 299

Query: 301 GVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSL 340
                + + R+WVR +L+ER  KPFEF RTVP Y+ SQ +
Sbjct: 300 STAGTIQESREWVRKKLEERQFKPFEFARTVPAYNPSQRV 339

Cleaves the 2'-5' phosphodiester linkage at the branch point of lariat intron pre-mRNAs after splicing and converts them into linear molecules that are subsequently degraded. It thereby facilitates ribonucleotide turnover. It may also participate in retrovirus replication via a RNA lariat intermediate in cDNA synthesis. Plays en essential role during embryogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp\|Q6AU07\|DBR1_ORYSJ Lariat debranching enzyme OS=Oryza sativa subsp. japonica GN=DBR1 PE=2 SV=1	Back alignment and function description

>sp\|Q6P886\|DBR1_XENTR Lariat debranching enzyme OS=Xenopus tropicalis GN=dbr1 PE=2 SV=1	Back alignment and function description

>sp\|Q6GPB8\|DBR1A_XENLA Lariat debranching enzyme A OS=Xenopus laevis GN=dbr1-a PE=2 SV=1	Back alignment and function description

>sp\|Q7T3E4\|DBR1_DANRE Lariat debranching enzyme OS=Danio rerio GN=dbr1 PE=1 SV=1	Back alignment and function description

>sp\|Q7ZWU9\|DBR1B_XENLA Lariat debranching enzyme B OS=Xenopus laevis GN=dbr1-b PE=2 SV=1	Back alignment and function description

>sp\|Q9UK59\|DBR1_HUMAN Lariat debranching enzyme OS=Homo sapiens GN=DBR1 PE=1 SV=2	Back alignment and function description

>sp\|Q923B1\|DBR1_MOUSE Lariat debranching enzyme OS=Mus musculus GN=Dbr1 PE=1 SV=2	Back alignment and function description

>sp\|Q5ZLM2\|DBR1_CHICK Lariat debranching enzyme OS=Gallus gallus GN=DBR1 PE=2 SV=1	Back alignment and function description

>sp\|Q9VSD7\|DBR1_DROME Lariat debranching enzyme OS=Drosophila melanogaster GN=ldbr PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		358
359492991		415	PREDICTED: lariat debranching enzyme [Vi	1.0	0.862	0.796	1e-172
302142122		407	unnamed protein product [Vitis vinifera]	1.0	0.879	0.796	1e-172
255548668		760	RNA lariat debranching enzyme, putative	0.944	0.444	0.810	1e-169
449493293		413	PREDICTED: lariat debranching enzyme-lik	1.0	0.866	0.768	1e-169
449441840		413	PREDICTED: lariat debranching enzyme-lik	1.0	0.866	0.768	1e-169
224143367		434	predicted protein [Populus trichocarpa]	0.969	0.799	0.795	1e-167
18417871		418	Lariat debranching enzyme [Arabidopsis t	0.946	0.811	0.764	1e-158
297798790		418	hypothetical protein ARALYDRAFT_913289 [	0.946	0.811	0.761	1e-158
357465981		412	Lariat debranching enzyme [Medicago trun	0.946	0.822	0.764	1e-156
357115407		406	PREDICTED: lariat debranching enzyme-lik	0.966	0.852	0.710	1e-149

>gi\|359492991\|ref\|XP_002283617.2\| PREDICTED: lariat debranching enzyme [Vitis vinifera]	Back alignment and taxonomy information

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/363 (79%), Positives = 314/363 (86%), Gaps = 5/363 (1%)

Query: 1   MRIAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYRE 60
           MRIAVEGCMHG+LDNVY TL+Y+E + + KIDLL+CCGDFQAVRN+ D+ESLNVP KYR 
Sbjct: 1   MRIAVEGCMHGDLDNVYSTLRYLEEVENTKIDLLICCGDFQAVRNKKDLESLNVPPKYRS 60

Query: 61  MKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRI 120
           M SFWKYYSGQEVAP PTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRI
Sbjct: 61  MNSFWKYYSGQEVAPFPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRI 120

Query: 121 GGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGI 180
           GGLSGIYN RHY LGHYERPPYNE  IRSVYHVREYDVHKLMQ+EEPIDIFLSHDWPCGI
Sbjct: 121 GGLSGIYNERHYHLGHYERPPYNERDIRSVYHVREYDVHKLMQVEEPIDIFLSHDWPCGI 180

Query: 181 TDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGED 240
           TD+GN KELVR+K +FEKEIQ+ TLGS+ AA+LLEKLKPSYWFSAHLHCKFAA+VQHGE 
Sbjct: 181 TDHGNWKELVRYKPFFEKEIQERTLGSKAAAELLEKLKPSYWFSAHLHCKFAALVQHGEV 240

Query: 241 SPVTKFLALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFG 300
             VTKFLALDKCLP RKFLQ+ EIE+  GPYEIQYDEEWLAITR FNS+FPLT   AN G
Sbjct: 241 GQVTKFLALDKCLPGRKFLQIVEIETVPGPYEIQYDEEWLAITRKFNSIFPLTIHRANLG 300

Query: 301 GVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAG-----NSSEMLKF 355
           G Q DM DCR WVRSRL  RGAKPFEFV+TVPCYD SQS S   F+G      +  +L+F
Sbjct: 301 GAQVDMQDCRDWVRSRLLTRGAKPFEFVQTVPCYDPSQSASNSCFSGYHRNPQTELLLQF 360

Query: 356 IVL 358
           + L
Sbjct: 361 LEL 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|302142122\|emb\|CBI19325.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255548668\|ref\|XP_002515390.1\| RNA lariat debranching enzyme, putative [Ricinus communis] gi\|223545334\|gb\|EEF46839.1\| RNA lariat debranching enzyme, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449493293\|ref\|XP_004159246.1\| PREDICTED: lariat debranching enzyme-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449441840\|ref\|XP_004138690.1\| PREDICTED: lariat debranching enzyme-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224143367\|ref\|XP_002324932.1\| predicted protein [Populus trichocarpa] gi\|222866366\|gb\|EEF03497.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi|18417871|ref|NP_567881.1| Lariat debranching enzyme [Arabidopsis thaliana] gi|75250263|sp|Q94K01.1|DBR1_ARATH RecName: Full=Lariat debranching enzyme; Short=AtDBR1 gi|13877597|gb|AAK43876.1|AF370499_1 RNA lariat debranching enzyme - like protein [Arabidopsis thaliana] gi|114213511|gb|ABI54338.1| At4g31770 [Arabidopsis thaliana] gi|332660555|gb|AEE85955.1| Lariat debranching enzyme [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297798790\|ref\|XP_002867279.1\| hypothetical protein ARALYDRAFT_913289 [Arabidopsis lyrata subsp. lyrata] gi\|297313115\|gb\|EFH43538.1\| hypothetical protein ARALYDRAFT_913289 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357465981\|ref\|XP_003603275.1\| Lariat debranching enzyme [Medicago truncatula] gi\|355492323\|gb\|AES73526.1\| Lariat debranching enzyme [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357115407\|ref\|XP_003559480.1\| PREDICTED: lariat debranching enzyme-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		358
TAIR\|locus:2124829		418	DBR1 "AT4G31770" [Arabidopsis	0.941	0.806	0.769	1.3e-148
UNIPROTKB\|Q6P886		534	dbr1 "Lariat debranching enzym	0.935	0.627	0.538	3.3e-102
UNIPROTKB\|Q6GPB8		534	dbr1-a "Lariat debranching enz	0.935	0.627	0.545	5.4e-102
UNIPROTKB\|Q7ZWU9		533	dbr1-b "Lariat debranching enz	0.935	0.628	0.532	5.6e-100
ZFIN\|ZDB-GENE-030131-2466		568	dbr1 "debranching enzyme homol	0.935	0.589	0.533	1.5e-99
UNIPROTKB\|E2QXS5		544	DBR1 "Uncharacterized protein"	0.944	0.621	0.536	1e-98
UNIPROTKB\|A5PJS3		544	DBR1 "Uncharacterized protein"	0.944	0.621	0.528	1.3e-98
UNIPROTKB\|Q9UK59		544	DBR1 "Lariat debranching enzym	0.944	0.621	0.534	1.7e-98
MGI\|MGI:1931520		550	Dbr1 "debranching enzyme homol	0.944	0.614	0.531	3.2e-97
RGD\|1598038		545	Dbr1 "debranching enzyme homol	0.944	0.620	0.531	4.1e-97

TAIR\|locus:2124829 DBR1 "AT4G31770" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1451 (515.8 bits), Expect = 1.3e-148, P = 1.3e-148
 Identities = 260/338 (76%), Positives = 293/338 (86%)

Query:     1 MRIAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYRE 60
             M+IA+EGCMHG+LDNVYKT+Q+ E I++ K+DLLLCCGDFQAVRNE DM+SLNVPRKYRE
Sbjct:     1 MKIAIEGCMHGDLDNVYKTIQHYEQIHNTKVDLLLCCGDFQAVRNEKDMDSLNVPRKYRE 60

Query:    61 MKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRI 120
             MKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAA NIYFLGFAGVVKFGN+RI
Sbjct:    61 MKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAATNIYFLGFAGVVKFGNVRI 120

Query:   121 GGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGI 180
             GGLSGIYN RHYR GH+ERPPYNESTIRSVYHVR+YDV KLMQ+EEP+DIFLSHDWP GI
Sbjct:   121 GGLSGIYNERHYRSGHFERPPYNESTIRSVYHVRDYDVQKLMQLEEPLDIFLSHDWPVGI 180

Query:   181 TDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGED 240
             TDYG+ + L+R K YF +EI++ TLGS+PAA LLEKLKP YWFSAHLHCKFAA VQHG D
Sbjct:   181 TDYGDSESLMRQKPYFRQEIEEKTLGSKPAALLLEKLKPQYWFSAHLHCKFAAAVQHGND 240

Query:   241 SPVTKFLALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFG 300
               VTKFLALDKCLP +KFLQ+ EIES  GP+E+ YDEEWLAITR FNS+FPLT +  N  
Sbjct:   241 GSVTKFLALDKCLPGKKFLQIIEIESEPGPFEVLYDEEWLAITRKFNSIFPLTRRYTNVS 300

Query:   301 GVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQ 338
                  + + R+WVR +L+ER  KPFEF RTVP Y+ SQ
Sbjct:   301 -TAGTIQESREWVRKKLEERQFKPFEFARTVPAYNPSQ 337

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006397 "mRNA processing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0008419 "RNA lariat debranching enzyme activity" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

UNIPROTKB\|Q6P886 dbr1 "Lariat debranching enzyme" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6GPB8 dbr1-a "Lariat debranching enzyme A" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7ZWU9 dbr1-b "Lariat debranching enzyme B" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-2466 dbr1 "debranching enzyme homolog 1 (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXS5 DBR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A5PJS3 DBR1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UK59 DBR1 "Lariat debranching enzyme" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1931520 Dbr1 "debranching enzyme homolog 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1598038 Dbr1 "debranching enzyme homolog 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q923B1	DBR1_MOUSE	3, ., 1, ., -, ., -	0.5196	0.9329	0.6072	yes	no
Q5ZLM2	DBR1_CHICK	3, ., 1, ., -, ., -	0.5085	0.9441	0.6305	yes	no
Q6P886	DBR1_XENTR	3, ., 1, ., -, ., -	0.5386	0.9357	0.6273	yes	no
Q6AU07	DBR1_ORYSJ	3, ., 1, ., -, ., -	0.7388	0.9413	0.8280	yes	no
Q94K01	DBR1_ARATH	3, ., 1, ., -, ., -	0.7647	0.9469	0.8110	yes	no
Q9UK59	DBR1_HUMAN	3, ., 1, ., -, ., -	0.5252	0.9329	0.6139	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		358
cd00844		262	cd00844, MPP_Dbr1_N, Dbr1 RNA lariat debranching e	1e-177
pfam05011		147	pfam05011, DBR1, Lariat debranching enzyme, C-term	1e-32
pfam00149		185	pfam00149, Metallophos, Calcineurin-like phosphoes	4e-16
cd07380		150	cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CW	8e-06

>gnl\|CDD\|163619 cd00844, MPP_Dbr1_N, Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain	Back alignment and domain information

 Score =  492 bits (1269), Expect = e-177
 Identities = 170/262 (64%), Positives = 204/262 (77%), Gaps = 5/262 (1%)

Query: 3   IAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMK 62
           IAVEGC HGELD +Y+TL+ +E     K+DLL+CCGDFQAVRNE D++ + VP KYR+M 
Sbjct: 1   IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMG 60

Query: 63  SFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGG 122
            F+KYYSG++ API TIFIGGNHEASNYLWEL YGGW APNIY+LG+AGVV FG +RI G
Sbjct: 61  DFYKYYSGEKKAPILTIFIGGNHEASNYLWELPYGGWVAPNIYYLGYAGVVNFGGLRIAG 120

Query: 123 LSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITD 182
           LSGIY +  YR GH+ERPPY+E T RS YHVR  +V KL Q+++PIDIFLSHDWP GI  
Sbjct: 121 LSGIYKSHDYRKGHFERPPYSEDTKRSAYHVRNIEVFKLKQLKQPIDIFLSHDWPRGIYK 180

Query: 183 YGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSP 242
           +G+ K+L+R K +F ++I+ GTLGS  A +LL+ LKP YWFSAHLH KFAA+V H   SP
Sbjct: 181 HGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKFAALVPHENKSP 240

Query: 243 -----VTKFLALDKCLPRRKFL 259
                 TKFLALDKCLP R FL
Sbjct: 241 GNTNKETKFLALDKCLPGRDFL 262

Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 262

>gnl\|CDD\|218381 pfam05011, DBR1, Lariat debranching enzyme, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase	Back alignment and domain information

>gnl\|CDD\|163623 cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		358
KOG2863		456	consensus RNA lariat debranching enzyme [RNA proce	100.0
cd00844		262	MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t	100.0
KOG2476		528	consensus Uncharacterized conserved protein [Funct	100.0
cd07380		150	MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re	100.0
PF05011		145	DBR1: Lariat debranching enzyme, C-terminal domain	99.96
cd07388		224	MPP_Tt1561 Thermus thermophilus Tt1561 and related	99.9
cd07392		188	MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel	99.87
COG2129		226	Predicted phosphoesterases, related to the Icc pro	99.81
PF14582		255	Metallophos_3: Metallophosphoesterase, calcineurin	99.72
cd07397		238	MPP_DevT Myxococcus xanthus DevT and related prote	99.62
cd07379		135	MPP_239FB Homo sapiens 239FB and related proteins,	99.57
TIGR03729		239	acc_ester putative phosphoesterase. Members of thi	99.49
cd07402		240	MPP_GpdQ Enterobacter aerogenes GpdQ and related p	99.47
PF00149		200	Metallophos: Calcineurin-like phosphoesterase; Int	99.46
KOG3947		305	consensus Phosphoesterases [General function predi	99.46
cd07404		166	MPP_MS158 Microscilla MS158 and related proteins,	99.38
cd07403		129	MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel	99.3
PF12850		156	Metallophos_2: Calcineurin-like phosphoesterase su	99.3
PRK11148		275	cyclic 3',5'-adenosine monophosphate phosphodieste	99.22
cd00841		155	MPP_YfcE Escherichia coli YfcE and related protein	99.2
cd07393		232	MPP_DR1119 Deinococcus radiodurans DR1119 and rela	99.16
cd07396		267	MPP_Nbla03831 Homo sapiens Nbla03831 and related p	99.16
TIGR00040		158	yfcE phosphoesterase, MJ0936 family. Members of th	99.13
cd07385		223	MPP_YkuE_C Bacillus subtilis YkuE and related prot	99.09
PRK05340		241	UDP-2,3-diacylglucosamine hydrolase; Provisional	99.08
cd07400		144	MPP_YydB Bacillus subtilis YydB and related protei	99.07
cd00838		131	MPP_superfamily metallophosphatase superfamily, me	99.07
cd00840		223	MPP_Mre11_N Mre11 nuclease, N-terminal metallophos	98.93
cd00839		294	MPP_PAPs purple acid phosphatases of the metalloph	98.92
PRK04036		504	DNA polymerase II small subunit; Validated	98.9
TIGR01854		231	lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase.	98.88
cd07395		262	MPP_CSTP1 Homo sapiens CSTP1 and related proteins,	98.84
cd07401		256	MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal	98.82
cd07394		178	MPP_Vps29 Homo sapiens Vps29 and related proteins,	98.79
cd07399		214	MPP_YvnB Bacillus subtilis YvnB and related protei	98.78
PRK11340		271	phosphodiesterase YaeI; Provisional	98.77
cd07378		277	MPP_ACP5 Homo sapiens acid phosphatase 5 and relat	98.77
PLN02533		427	probable purple acid phosphatase	98.74
PHA02546		340	47 endonuclease subunit; Provisional	98.73
cd07386		243	MPP_DNA_pol_II_small_archeal_C archeal DNA polymer	98.7
cd08163		257	MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related	98.7
PRK09453		182	phosphodiesterase; Provisional	98.69
COG0622		172	Predicted phosphoesterase [General function predic	98.6
PHA03008		234	hypothetical protein; Provisional	98.6
cd07383		199	MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase	98.53
PHA02239		235	putative protein phosphatase	98.47
COG1409		301	Icc Predicted phosphohydrolases [General function	98.45
PRK00166		275	apaH diadenosine tetraphosphatase; Reviewed	98.34
COG1768		230	Predicted phosphohydrolase [General function predi	98.34
cd00845		252	MPP_UshA_N_like Escherichia coli UshA-like family,	98.34
cd07423		234	MPP_PrpE Bacillus subtilis PrpE and related protei	98.27
cd07410		277	MPP_CpdB_N Escherichia coli CpdB and related prote	98.26
cd08166		195	MPP_Cdc1_like_1 uncharacterized subgroup related t	98.22
COG0420		390	SbcD DNA repair exonuclease [DNA replication, reco	98.22
cd07424		207	MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do	98.22
TIGR00619		253	sbcd exonuclease SbcD. This family is based on the	98.16
cd07412		288	MPP_YhcR_N Bacillus subtilis YhcR endonuclease and	98.13
cd07406		257	MPP_CG11883_N Drosophila melanogaster CG11883 and	98.13
TIGR00583		405	mre11 DNA repair protein (mre11). All proteins in	98.1
cd07398		217	MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat	98.09
PRK10966		407	exonuclease subunit SbcD; Provisional	98.04
cd07409		281	MPP_CD73_N CD73 ecto-5'-nucleotidase and related p	98.02
PRK11439		218	pphA serine/threonine protein phosphatase 1; Provi	98.01
PRK13625		245	bis(5'-nucleosyl)-tetraphosphatase PrpE; Provision	97.97
cd07408		257	MPP_SA0022_N Staphylococcus aureus SA0022 and rela	97.96
PRK09968		218	serine/threonine-specific protein phosphatase 2; P	97.95
cd08162		313	MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA	97.91
cd07405		285	MPP_UshA_N Escherichia coli UshA and related prote	97.87
TIGR00668		279	apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric	97.85
cd00842		296	MPP_ASMase acid sphingomyelinase and related prote	97.83
cd07425		208	MPP_Shelphs Shewanella-like phosphatases, metallop	97.82
cd07421		304	MPP_Rhilphs Rhilph phosphatases, metallophosphatas	97.81
cd00144		225	MPP_PPP_family phosphoprotein phosphatases of the	97.81
cd07422		257	MPP_ApaH Escherichia coli ApaH and related protein	97.8
cd07411		264	MPP_SoxB_N Thermus thermophilus SoxB and related p	97.76
cd07413		222	MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat	97.75
PRK09419		1163	bifunctional 2',3'-cyclic nucleotide 2'-phosphodie	97.68
KOG2679		336	consensus Purple (tartrate-resistant) acid phospha	97.56
cd07387		257	MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2	97.53
cd07390		168	MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro	97.53
KOG1378		452	consensus Purple acid phosphatase [Carbohydrate tr	97.52
TIGR01530		550	nadN NAD pyrophosphatase/5'-nucleotidase NadN. Thi	97.52
PRK09558		551	ushA bifunctional UDP-sugar hydrolase/5'-nucleotid	97.5
COG0737		517	UshA 5'-nucleotidase/2',3'-cyclic phosphodiesteras	97.47
COG1311		481	HYS2 Archaeal DNA polymerase II, small subunit/DNA	97.43
PTZ00422		394	glideosome-associated protein 50; Provisional	97.42
cd07391		172	MPP_PF1019 Pyrococcus furiosus PF1019 and related	97.29
TIGR03767		496	P_acnes_RR metallophosphoesterase, PPA1498 family.	97.29
TIGR00024		225	SbcD_rel_arch putative phosphoesterase, SbcD/Mre11	97.19
smart00156		271	PP2Ac Protein phosphatase 2A homologues, catalytic	97.17
COG2908		237	Uncharacterized protein conserved in bacteria [Fun	97.16
cd07420		321	MPP_RdgC Drosophila melanogaster RdgC and related	97.02
cd07416		305	MPP_PP2B PP2B, metallophosphatase domain. PP2B (ca	97.01
PRK09419		1163	bifunctional 2',3'-cyclic nucleotide 2'-phosphodie	96.91
cd07414		293	MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzyme	96.86
PTZ00480		320	serine/threonine-protein phosphatase; Provisional	96.78
PRK09418		780	bifunctional 2',3'-cyclic nucleotide 2'-phosphodie	96.75
cd07415		285	MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein	96.7
PTZ00239		303	serine/threonine protein phosphatase 2A; Provision	96.66
cd07417		316	MPP_PP5_C PP5, C-terminal metallophosphatase domai	96.61
COG1407		235	Predicted ICC-like phosphoesterases [General funct	96.54
PTZ00244		294	serine/threonine-protein phosphatase PP1; Provisio	96.53
PRK09420		649	cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosp	96.49
cd07407		282	MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and	96.45
cd07382		255	MPP_DR1281 Deinococcus radiodurans DR1281 and rela	96.41
PF04042		209	DNA_pol_E_B: DNA polymerase alpha/epsilon subunit	96.39
cd07384		171	MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re	96.38
cd08165		156	MPP_MPPE1 human MPPE1 and related proteins, metall	96.36
cd07419		311	MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase a	96.36
TIGR01390		626	CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphod	96.32
cd07418		377	MPP_PP7 PP7, metallophosphatase domain. PP7 is a p	96.31
KOG2310		646	consensus DNA repair exonuclease MRE11 [Replicatio	96.25
COG4186		186	Predicted phosphoesterase or phosphohydrolase [Gen	96.2
TIGR00282		266	metallophosphoesterase, MG_246/BB_0505 family. A m	95.99
KOG3325		183	consensus Membrane coat complex Retromer, subunit	95.97
PRK11907		814	bifunctional 2',3'-cyclic nucleotide 2'-phosphodie	95.84
COG1408		284	Predicted phosphohydrolases [General function pred	95.73
cd08164		193	MPP_Ted1 Saccharomyces cerevisiae Ted1 and related	94.66
KOG0373		306	consensus Serine/threonine specific protein phosph	94.1
KOG3662		410	consensus Cell division control protein/predicted	94.06
KOG0372		303	consensus Serine/threonine specific protein phosph	93.13
TIGR03768		492	RPA4764 metallophosphoesterase, RPA4764 family. Th	92.48
KOG0371		319	consensus Serine/threonine protein phosphatase 2A,	91.25
KOG0374		331	consensus Serine/threonine specific protein phosph	90.99
smart00854		239	PGA_cap Bacterial capsule synthesis protein PGA_ca	90.98
cd07381		239	MPP_CapA CapA and related proteins, metallophospha	90.41
COG1692		266	Calcineurin-like phosphoesterase [General function	88.07
KOG1432		379	consensus Predicted DNA repair exonuclease SIA1 [G	86.56
KOG3818		525	consensus DNA polymerase epsilon, subunit B [Repli	85.74
KOG0375		517	consensus Serine-threonine phosphatase 2B, catalyt	85.59
KOG2863		456	consensus RNA lariat debranching enzyme [RNA proce	81.07

>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=7.4e-108  Score=782.26  Aligned_cols=353  Identities=57%  Similarity=0.970  Sum_probs=334.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHHHHHHhcCCCccEEEEecCccccCCcchhhhccchhhhHhhhHHHHHhcCCCCCCccEEE
Q 018289            1 MRIAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIF   80 (358)
Q Consensus         1 MkIlv~GD~HG~ld~i~~~v~~~~~k~g~~~DllI~~GDf~~~~n~~dl~~~~~p~k~~~l~~F~~y~~g~~~~pvpt~f   80 (358)
                      |||||.|||||+||.||++|..++++.+.++|+||||||||+.||..|+.+||||+|||+|++|++||+|+.+||+||||
T Consensus         1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF   80 (456)
T KOG2863|consen    1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF   80 (456)
T ss_pred             CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCchhHHHHhhCCccCCcEEEeCCceEEEEcCEEEEEEeCccCCccCCCCCCCCCCCChhhHhhhhhhhhHHHHH
Q 018289           81 IGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHK  160 (358)
Q Consensus        81 I~GNHE~~~~l~el~~gg~va~NI~yLg~~gv~~i~GlrIaGlsGi~~~~~y~~~~~e~~Py~~~~~~s~yh~re~dv~k  160 (358)
                      ||||||+++||+||++||||||||||||.+||++++|+||||+||||+++||+++|+|++||+.+++||+||+|+.||.+
T Consensus        81 IGGNHEAsnyL~eLpyGGwVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~stiRsiYHvR~~dV~~  160 (456)
T KOG2863|consen   81 IGGNHEASNYLQELPYGGWVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTIRSIYHVRISDVAK  160 (456)
T ss_pred             ecCchHHHHHHHhcccCceeccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhhhhhhhhhhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCccEEEeCCCCCCcccCCcchhhhhhccchhhcccCCCCCcHHHHHHHHHhCCCEEEEcCCCCccceeeccCCC
Q 018289          161 LMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGED  240 (358)
Q Consensus       161 L~~~~~~vDIlLSHdwP~gI~~~g~~~~l~~~kp~f~~~i~~~~lGS~~l~~ll~~lkPrywfsGH~H~~f~~~~~~~~~  240 (358)
                      |+++.+++|||||||||+||..|||..+|+|.||||++|++.+.+||+++.+|+++|||+||||||+|++|+|.+.|+++
T Consensus       161 Lkqlk~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yWfsAHLH~KFaA~v~H~~~  240 (456)
T KOG2863|consen  161 LKQLKHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYWFSAHLHVKFAALVQHNKR  240 (456)
T ss_pred             HHhhcCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchhhhhhHhhHHhhhhcccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEccccCCCCCeeEEEeccCCC-CCceeeeChHHHHHHHhhCCCCCCCCCCCCCCCC------CCCcHHHHHHH
Q 018289          241 SPVTKFLALDKCLPRRKFLQVFEIESGQ-GPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGV------QHDMNDCRQWV  313 (358)
Q Consensus       241 ~~~TrFlaL~k~~~~rk~l~a~~i~~~~-~~~~~~~d~~wl~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  313 (358)
                      .++|+|+|||||+|+|+|+|+++++.++ +++.++||.|||+|+|.|+.+.+.......+|+.      -..+++++.|+
T Consensus       241 ~~~tkflaldKclp~~~flqile~~sdp~g~~~~eyd~ewlsi~~~tn~l~~~k~~~~~~p~~~~~r~e~~~~ep~~~~~  320 (456)
T KOG2863|consen  241 SHVTKFLALDKCLPNRNFLQILEIPSDPRGPMNVEYDNEWLSILRETNFLILVKCRYRNRPNRDLCRLEILEKEPDLSHV  320 (456)
T ss_pred             CCCcccccccccCCCcchhhhccCCCCCCCCcccchhhhHHHhhhccchhhhhhhhhhcCCcccchhhhccccCCccchh
Confidence            9999999999999999999999998876 8999999999999999999999999888887653      23567788999


Q ss_pred             HHHhhhCCCCCCcceeccCCCCCCCCC-----ccCCCCCChhhhh
Q 018289          314 RSRLQERGAKPFEFVRTVPCYDASQSL-----SIGAFAGNSSEML  353 (358)
Q Consensus       314 ~~~~~~~~~~~~~f~~~~~~~~~~~~~-----~~~~~~~~~~~~~  353 (358)
                      ...+......|+||.+|+++|+|..+.     +.++|+..+++-|
T Consensus       321 ~~k~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~P~~~~f~a~l  365 (456)
T KOG2863|consen  321 SWKDENHLMVPDNFSRTNFVYDPKEPIVQNLHSNNPQTSVFSAEL  365 (456)
T ss_pred             hhcchhhhcCCCccccceeeeccccccccccccCCCchhhHHHHH
Confidence            999988888999999999999998772     2335566666655

>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain	Back alignment and domain information

>KOG2476 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>PF05011 DBR1: Lariat debranching enzyme, C-terminal domain; InterPro: IPR007708 This presumed domain is found at the C terminus of lariat debranching enzyme	Back alignment and domain information

>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain	Back alignment and domain information

>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]	Back alignment and domain information

>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A	Back alignment and domain information

>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain	Back alignment and domain information

>TIGR03729 acc_ester putative phosphoesterase	Back alignment and domain information

>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	Back alignment and domain information

>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11	Back alignment and domain information

>KOG3947 consensus Phosphoesterases [General function prediction only]	Back alignment and domain information

>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain	Back alignment and domain information

>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily []	Back alignment and domain information

>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional	Back alignment and domain information

>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain	Back alignment and domain information

>TIGR00040 yfcE phosphoesterase, MJ0936 family	Back alignment and domain information

>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	Back alignment and domain information

>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional	Back alignment and domain information

>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain	Back alignment and domain information

>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain	Back alignment and domain information

>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain	Back alignment and domain information

>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain	Back alignment and domain information

>PRK04036 DNA polymerase II small subunit; Validated	Back alignment and domain information

>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase	Back alignment and domain information

>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain	Back alignment and domain information

>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK11340 phosphodiesterase YaeI; Provisional	Back alignment and domain information

>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain	Back alignment and domain information

>PLN02533 probable purple acid phosphatase	Back alignment and domain information

>PHA02546 47 endonuclease subunit; Provisional	Back alignment and domain information

>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain	Back alignment and domain information

>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK09453 phosphodiesterase; Provisional	Back alignment and domain information

>COG0622 Predicted phosphoesterase [General function prediction only]	Back alignment and domain information

>PHA03008 hypothetical protein; Provisional	Back alignment and domain information

>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	Back alignment and domain information

>PHA02239 putative protein phosphatase	Back alignment and domain information

>COG1409 Icc Predicted phosphohydrolases [General function prediction only]	Back alignment and domain information

>PRK00166 apaH diadenosine tetraphosphatase; Reviewed	Back alignment and domain information

>COG1768 Predicted phosphohydrolase [General function prediction only]	Back alignment and domain information

>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain	Back alignment and domain information

>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain	Back alignment and domain information

>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain	Back alignment and domain information

>TIGR00619 sbcd exonuclease SbcD	Back alignment and domain information

>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>TIGR00583 mre11 DNA repair protein (mre11)	Back alignment and domain information

>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK10966 exonuclease subunit SbcD; Provisional	Back alignment and domain information

>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional	Back alignment and domain information

>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional	Back alignment and domain information

>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional	Back alignment and domain information

>cd08162 MPP_PhoA_N Synechococcus sp	Back alignment and domain information

>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	Back alignment and domain information

>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain	Back alignment and domain information

>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain	Back alignment and domain information

>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain	Back alignment and domain information

>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed	Back alignment and domain information

>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain	Back alignment and domain information

>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain	Back alignment and domain information

>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN	Back alignment and domain information

>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	Back alignment and domain information

>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	Back alignment and domain information

>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>PTZ00422 glideosome-associated protein 50; Provisional	Back alignment and domain information

>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain	Back alignment and domain information

>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family	Back alignment and domain information

>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related	Back alignment and domain information

>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain	Back alignment and domain information

>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07416 MPP_PP2B PP2B, metallophosphatase domain	Back alignment and domain information

>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed	Back alignment and domain information

>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain	Back alignment and domain information

>PTZ00480 serine/threonine-protein phosphatase; Provisional	Back alignment and domain information

>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed	Back alignment and domain information

>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain	Back alignment and domain information

>PTZ00239 serine/threonine protein phosphatase 2A; Provisional	Back alignment and domain information

>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain	Back alignment and domain information

>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]	Back alignment and domain information

>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional	Back alignment and domain information

>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed	Back alignment and domain information

>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain	Back alignment and domain information

>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast	Back alignment and domain information

>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain	Back alignment and domain information

>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase	Back alignment and domain information

>cd07418 MPP_PP7 PP7, metallophosphatase domain	Back alignment and domain information

>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]	Back alignment and domain information

>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]	Back alignment and domain information

>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family	Back alignment and domain information

>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed	Back alignment and domain information

>COG1408 Predicted phosphohydrolases [General function prediction only]	Back alignment and domain information

>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain	Back alignment and domain information

>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]	Back alignment and domain information

>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]	Back alignment and domain information

>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family	Back alignment and domain information

>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap	Back alignment and domain information

>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain	Back alignment and domain information

>COG1692 Calcineurin-like phosphoesterase [General function prediction only]	Back alignment and domain information

>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]	Back alignment and domain information

>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]	Back alignment and domain information

>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]	Back alignment and domain information

>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		358
2yvt_A		260	Hypothetical protein AQ_1956; structural genomics,	4e-11
1uf3_A		228	Hypothetical protein TT1561; metallo-dependent pho	1e-10
3rl5_A		296	Metallophosphoesterase mpped2; alpha-beta fold, me	1e-04

>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 Length = 260	Back alignment and structure

 Score = 61.7 bits (149), Expect = 4e-11
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 39/233 (16%)

Query: 10  HGELDNVYKTLQYMENINSYKIDLLLCCGDF------------QAVRNENDMESLNVPRK 57
               D + K    +      + D+L+  G+               +        +    +
Sbjct: 15  KERFDLLPKLKGVIAE---KQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENE 71

Query: 58  YREMKSFWKYYSGQEVAPIPTIFIGGNHEASN--YLWELYYGGWAAPNIYFLGFAGVVKF 115
           +  +++  K++       + T  + G ++A    +L   Y    A PNI  L        
Sbjct: 72  HYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIRVLHEGFAGWR 131

Query: 116 GNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHD 175
           G   + G  G+     +      + P             EY +  + +++    + + + 
Sbjct: 132 GEFEVIGFGGLLTEHEFEEDFVLKYPRWYV---------EYILKFVNELKPRRLVTIFYT 182

Query: 176 WPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLH 228
            P G              ++          GS     +++ L P      H+ 
Sbjct: 183 PPIGE----FVDRTPEDPKH---------HGSAVVNTIIKSLNPEVAIVGHVG 222

PyMOL of 2yvt

>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Length = 228	Back alignment and structure

>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A* Length = 296	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		358
3rl5_A		296	Metallophosphoesterase mpped2; alpha-beta fold, me	99.85
1uf3_A		228	Hypothetical protein TT1561; metallo-dependent pho	99.81
2yvt_A		260	Hypothetical protein AQ_1956; structural genomics,	99.8
3d03_A		274	Phosphohydrolase; glycerophosphodiesterase, metall	99.57
3ib7_A		330	ICC protein; metallophosphoesterase, alpha-beta fo	99.53
3ck2_A		176	Conserved uncharacterized protein (predicted phosp	99.23
1s3l_A		190	Hypothetical protein MJ0936; phosphodiesterase, nu	99.23
2xmo_A		443	LMO2642 protein; phosphodiesterase, hydrolase; 1.7	99.22
3av0_A		386	DNA double-strand break repair protein MRE11; DNA	99.17
1nnw_A		252	Hypothetical protein; structural genomics, PSI, pr	99.16
2nxf_A		322	Putative dimetal phosphatase; dinuclear metal cent	99.12
3tho_B		379	Exonuclease, putative; adenosine triphosphate, bac	99.09
3rqz_A		246	Metallophosphoesterase; PSI-biology, midwest cente	99.08
2q8u_A		336	Exonuclease, putative; structural genomics, joint	99.07
1ute_A		313	Protein (II purple acid phosphatase); tartrate res	99.06
1z2w_A		192	Vacuolar protein sorting 29; VPS29, retromer, phos	99.04
3qfm_A		270	SAPH, putative uncharacterized protein; sandwich f	99.01
2a22_A		215	Vacuolar protein sorting 29; alpha-beta-BETA-alpha	99.0
1xm7_A		195	Hypothetical protein AQ_1665; structural genomics,	98.95
1ii7_A		333	MRE11 nuclease; RAD50, DNA double-strand break rep	98.95
1xzw_A		426	Purple acid phosphatase; hydrolase; HET: NAG FUC M	98.73
2qfp_A		424	Purple acid phosphatase; binuclear, Fe-Zn, hydrola	98.68
2kkn_A		178	Uncharacterized protein; protein phosphatase 2A ho	98.57
3tgh_A		342	Glideosome-associated protein 50; phosphatase fold	98.57
1hp1_A		516	5'-nucleotidase; metallophosphatase, dinuclear, me	98.55
1su1_A		208	Hypothetical protein YFCE; structural genomics, ph	98.55
3t1i_A		431	Double-strand break repair protein MRE11A; DNA rep	98.42
1g5b_A		221	Serine/threonine protein phosphatase; bacteriophag	98.29
3qfk_A		527	Uncharacterized protein; structural genomics, cent	98.13
2dfj_A		280	Diadenosinetetraphosphatase; helices and strands m	98.11
2qjc_A		262	Diadenosine tetraphosphatase, putative; putative d	97.98
3ive_A		509	Nucleotidase; structural genomics, PSI-2, protein	97.93
2z1a_A		552	5'-nucleotidase; metal-binding, nucleotide-binding	97.86
2z72_A		342	Protein-tyrosine-phosphatase; cold-active enzyme,	97.82
2ie4_C		309	PP2A-alpha;, serine/threonine-protein phosphatase	97.72
3h63_A		315	Serine/threonine-protein phosphatase 5; metalloenz	97.7
4fbw_A		417	DNA repair protein RAD32; DNA double-strand break	97.7
1wao_1		477	Serine/threonine protein phosphatase 5; hydrolase,	97.7
4h2g_A		546	5'-nucleotidase; dimer, hydrolase, phosphatase, ex	97.67
3icf_A		335	PPT, serine/threonine-protein phosphatase T; IRO m	97.66
4fbk_A		472	DNA repair and telomere maintenance protein NBS1,	97.65
1fjm_A		330	Protein serine/threonine phosphatase-1 (alpha ISO	97.62
3ztv_A		579	NAD nucleotidase, NADN; hydrolase, NAD pyrophospha	97.56
3e7a_A		299	PP-1A, serine/threonine-protein phosphatase PP1-al	97.55
1aui_A		521	Calcineurin, serine/threonine phosphatase 2B; hydr	97.39
3ll8_A		357	Serine/threonine-protein phosphatase 2B catalytic	97.39
2wdc_A		562	SOXB, sulfur oxidation protein SOXB; sulfur-sulfur	97.38
3e0j_A		476	DNA polymerase subunit delta-2; DNA polymerase del	97.3
4h1s_A		530	5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo	97.25
3c9f_A		557	5'-nucleotidase; 2',3'-cyclic phosphodiesterase, p	97.08
3gve_A		341	YFKN protein; alpha-beta-BETA-alpha sandwich, stru	97.01
3jyf_A		339	2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- n	96.59
1t71_A		281	Phosphatase, conserved HYPO; crystal, X-RAY crysta	95.23
1t70_A		255	Phosphatase; crystal, X-RAY crystallography, struc	94.39
2z06_A		252	Putative uncharacterized protein TTHA0625; metal b	92.23
3flo_A		460	DNA polymerase alpha subunit B; protein-protein co	90.89
2yeq_A		527	Apased, PHOD, alkaline phosphatase D; hydrolase, p	90.69

>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*	Back alignment and structure

Probab=99.85  E-value=1.1e-20  Score=181.67  Aligned_cols=195  Identities=19%  Similarity=0.253  Sum_probs=130.0

Q ss_pred             CEEEEEcCCCCChHHHHHHHHHHHHhcCCCccEEEEecCccccCCcchhhhccchhhhHhhhHHHHHhcCCCCCCccEEE
Q 018289            1 MRIAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIF   80 (358)
Q Consensus         1 MkIlv~GD~HG~ld~i~~~v~~~~~k~g~~~DllI~~GDf~~~~n~~dl~~~~~p~k~~~l~~F~~y~~g~~~~pvpt~f   80 (358)
                      |||+++||+||+...+  .       - .++|+||+|||++......            ++..+.+++.... . .++++
T Consensus        60 mri~~iSD~H~~~~~l--~-------i-~~~D~vi~aGDl~~~g~~~------------e~~~~~~~L~~l~-~-~~v~~  115 (296)
T 3rl5_A           60 TRFVCISDTRSRTDGI--Q-------M-PYGDILLHTGDFTELGLPS------------EVKKFNDWLGNLP-Y-EYKIV  115 (296)
T ss_dssp             EEEEEEBCCTTCCTTC--C-------C-CSCSEEEECSCCSSSCCHH------------HHHHHHHHHHTSC-C-SEEEE
T ss_pred             eEEEEEeeCCCCcchh--c-------c-CCCCEEEECCcccCCCCHH------------HHHHHHHHHHhCC-C-CeEEE
Confidence            7999999999987543  1       1 2689999999998654322            2345566655432 1 35899


Q ss_pred             EcCCCCCc---hhHHHHh-----------------hCC--ccCCcEEEeCCceEEEEcCEEEEEEeCccCCccCCCCCCC
Q 018289           81 IGGNHEAS---NYLWELY-----------------YGG--WAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYE  138 (358)
Q Consensus        81 I~GNHE~~---~~l~el~-----------------~gg--~va~NI~yLg~~gv~~i~GlrIaGlsGi~~~~~y~~~~~e  138 (358)
                      |.||||..   ....++.                 .+.  .+..++.||.+ ++++++|+||.|..+.-....+      
T Consensus       116 V~GNHD~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-~~~~i~Gl~i~Gsp~tP~~~~~------  188 (296)
T 3rl5_A          116 IAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQD-SEVTVKGFRIYGAPWTPWFNGW------  188 (296)
T ss_dssp             CCCTTCGGGCHHHHHHHTTSCGGGSHHHHTCCHHHHTTTGGGCTTSEECSS-EEEEETTEEEEEECCBCC--CC------
T ss_pred             EcCCcccccchhhhhhhhcccccccccccccccchhhhHhhhcCCeEEecC-CcEEECCEEEEEecCCCCCCCc------
Confidence            99999974   2222221                 011  13468899965 5568999999995553211111      


Q ss_pred             CCCCChhhHhhhhhhhhHHHHHHhccCCCccEEEeCCCCCCcccCCcchhhhhhccchhhcccCCCCCcHHHHHHH-HHh
Q 018289          139 RPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLL-EKL  217 (358)
Q Consensus       139 ~~Py~~~~~~s~yh~re~dv~kL~~~~~~vDIlLSHdwP~gI~~~g~~~~l~~~kp~f~~~i~~~~lGS~~l~~ll-~~l  217 (358)
                      ...|++.+         ....++.++..++||||||.+|.++.+...              ....+.||..+.+.+ ++.
T Consensus       189 ~f~~~~~~---------~~~~~~~~ip~~~dILvTH~PP~g~~D~~~--------------~~~~~~G~~~L~~~i~~~~  245 (296)
T 3rl5_A          189 GFNLPRGQ---------SLLDKWNLIPEGTDILMTHGPPLGFRDWVP--------------KELQRVGCVELLNTVQRRV  245 (296)
T ss_dssp             TTBCCTTH---------HHHHHHTTSCTTCSEEEESSCBTTSSCEEG--------------GGTEECSBHHHHHHHHHTT
T ss_pred             CCCcchHH---------HHHHHHhhCCCCCeEEEECCCccccccccc--------------cccCcCChHHHHHHHHHhc
Confidence            12222211         112334566778999999999999865210              012468999999988 699


Q ss_pred             CCCEEEEcCCCCccceeeccCCCCCeeEEEEccccCC
Q 018289          218 KPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLP  254 (358)
Q Consensus       218 kPrywfsGH~H~~f~~~~~~~~~~~~TrFlaL~k~~~  254 (358)
                      +|++|++||.|..+.....     ..|.|+|.+.++.
T Consensus       246 ~p~l~v~GH~H~~~~~~~~-----g~t~vvNpGs~~~  277 (296)
T 3rl5_A          246 RPKLHVFGGIHEGYGTMTD-----GYTTYINASTCTV  277 (296)
T ss_dssp             CCSEEEECSCGGGCEEEEC-----SSCEEEECBCSCT
T ss_pred             CCCEEEECCccCCCceEEE-----CCEEEEECCcCCc
Confidence            9999999999998865432     2599999999985

PyMOL of 3rl5

>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6	Back alignment and structure

>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6	Back alignment and structure

>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A	Back alignment and structure

>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A	Back alignment and structure

>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7	Back alignment and structure

>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A	Back alignment and structure

>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}	Back alignment and structure

>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*	Back alignment and structure

>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A	Back alignment and structure

>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12	Back alignment and structure

>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C	Back alignment and structure

>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0	Back alignment and structure

>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A	Back alignment and structure

>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*	Back alignment and structure

>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A	Back alignment and structure

>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*	Back alignment and structure

>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7	Back alignment and structure

>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8	Back alignment and structure

>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A	Back alignment and structure

>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1	Back alignment and structure

>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*	Back alignment and structure

>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}	Back alignment and structure

>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}	Back alignment and structure

>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A	Back alignment and structure

>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7	Back alignment and structure

>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}	Back alignment and structure

>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3	Back alignment and structure

>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}	Back alignment and structure

>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}	Back alignment and structure

>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}	Back alignment and structure

>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*	Back alignment and structure

>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2	Back alignment and structure

>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A	Back alignment and structure

>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*	Back alignment and structure

>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A	Back alignment and structure

>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*	Back alignment and structure

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3	Back alignment and structure

>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*	Back alignment and structure

>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}	Back alignment and structure

>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*	Back alignment and structure

>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3	Back alignment and structure

>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*	Back alignment and structure

>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*	Back alignment and structure

>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3	Back alignment and structure

>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A	Back alignment and structure

>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A	Back alignment and structure

>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}	Back alignment and structure

>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}	Back alignment and structure

>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2	Back alignment and structure

>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}	Back alignment and structure

>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9	Back alignment and structure

>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9	Back alignment and structure

>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A	Back alignment and structure

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}	Back alignment and structure

>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		358
d2yvta1		257	d.159.1.6 (A:4-260) Uncharacterized protein Aq_195	2e-08
d1su1a_		184	d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia	0.002
d1uf3a_		228	d.159.1.6 (A:) Hypothetical protein TT1561 {Thermu	0.003

>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Length = 257	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Uncharacterized protein Aq 1956
species: Aquifex aeolicus [TaxId: 63363]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 29/241 (12%), Positives = 68/241 (28%), Gaps = 39/241 (16%)

Query: 2   RIAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDF------------QAVRNENDM 49
           ++          D + K       I   + D+L+  G+               +      
Sbjct: 4   KVLAIKNFKERFDLLPKLKGV---IAEKQPDILVVVGNILKNEALEKEYERAHLARREPN 60

Query: 50  ESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEA--SNYLWELYYGGWAAPNIYFL 107
             +    ++  +++  K++       + T  + G ++A    +L   Y    A PNI  L
Sbjct: 61  RKVIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIRVL 120

Query: 108 GFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEP 167
                   G   + G  G+           E     +  ++      EY +  + +++  
Sbjct: 121 HEGFAGWRGEFEVIGFGGL---------LTEHEFEEDFVLKYPRWYVEYILKFVNELKPR 171

Query: 168 IDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHL 227
             + + +  P               +            GS     +++ L P      H+
Sbjct: 172 RLVTIFYTPP-------------IGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHV 218

Query: 228 H 228
            
Sbjct: 219 G 219

PyMOL of d2yvta1

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Length = 184	Back information, alignment and structure

>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Length = 228	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		358
d1uf3a_		228	Hypothetical protein TT1561 {Thermus thermophilus	99.81
d2yvta1		257	Uncharacterized protein Aq_1956 {Aquifex aeolicus	99.81
d2hy1a1		256	Rv0805 cyclic nucleotide phosphodiesterase {Mycoba	99.48
d3d03a1		271	Glycerophosphodiesterase GpdQ {Enterobacter aeroge	99.47
d1s3la_		165	Putative phosphodiesterase MJ0936 {Methanococcus j	99.45
d1nnwa_		251	Hypothetical protein PF1291 {Archaeon Pyrococcus f	99.22
d3ck2a1		173	Uncharacterized protein SP1879 {Streptococcus pneu	99.18
d1su1a_		184	Phosphodiesterase yfcE {Escherichia coli [TaxId: 5	99.14
d1z2wa1		182	Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus	99.11
d2a22a1		193	Vacuolar protein sorting 29, VPS29 {Cryptosporidiu	98.94
d2nxfa1		320	Uncharacterized C17orf48 homolog zgc:64213 {Zebraf	98.87
d2qfra2		312	Plant purple acid phosphatase, catalytic domain {K	98.73
d1utea_		302	Mammalian purple acid phosphatase {Pig (Sus scrofa	98.54
d1ii7a_		333	Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.47
d1xm7a_		188	Hypothetical protein aq_1666 {Aquifex aeolicus [Ta	98.19
d1g5ba_		219	lambda ser/thr protein phosphatase {Bacteriophage	98.08
d1usha2		337	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	97.53
d2z1aa2		302	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	97.47
d3c9fa2		322	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	97.28
d1s95a_		324	Serine/threonine protein phosphatase 5, PP5 {Human	96.71
d3c5wc1		288	Protein phosphatase 2A catalytic subunit alpha iso	96.18
d1jk7a_		294	Protein phosphatase-1 (PP-1) {Human (Homo sapiens)	96.14
d1auia_		473	Protein phosphatase-2B (PP-2B, calcineurin A subun	95.69
d1t71a_		281	Hypothetical protein MPN349 {Mycoplasma pneumoniae	85.39
d1t70a_		255	Putative phosphatase DR1281 {Deinococcus radiodura	81.05

>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Hypothetical protein TT1561
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=3.9e-19  Score=156.51  Aligned_cols=212  Identities=16%  Similarity=0.185  Sum_probs=128.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHHHHHHhcCCCccEEEEecCccccCCcchhhhccchhhhHhhhHHHHHhcCCCCCCccEEE
Q 018289            1 MRIAVEGCMHGELDNVYKTLQYMENINSYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIF   80 (358)
Q Consensus         1 MkIlv~GD~HG~ld~i~~~v~~~~~k~g~~~DllI~~GDf~~~~n~~dl~~~~~p~k~~~l~~F~~y~~g~~~~pvpt~f   80 (358)
                      ++||++||+||+++++-+.++.++++   ++|+||++||+.......           ++...|.+-   .++..+|+++
T Consensus         6 ~~i~~~sd~hg~~eale~~~~~~~~~---~~D~vv~~GDl~~~~~~~-----------~~~~~~~~~---L~~~~~pv~~   68 (228)
T d1uf3a_           6 RYILATSNPMGDLEALEKFVKLAPDT---GADAIALIGNLMPKAAKS-----------RDYAAFFRI---LSEAHLPTAY   68 (228)
T ss_dssp             CEEEEEECCTTCHHHHHHHHTHHHHH---TCSEEEEESCSSCTTCCH-----------HHHHHHHHH---HGGGCSCEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHhhc---CCCEEEECCCCCCCCccc-----------hHHHHhhhh---hccccceEEE
Confidence            57999999999999988887766654   589999999997543221           112223333   4456789999


Q ss_pred             EcCCCCCchhHH--HHhhCCccCCcEEEeCCceEEEEcCEEEEEEeCccCCccCCCCCCCCCCCChhhHhhhhhhhhHHH
Q 018289           81 IGGNHEASNYLW--ELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDV  158 (358)
Q Consensus        81 I~GNHE~~~~l~--el~~gg~va~NI~yLg~~gv~~i~GlrIaGlsGi~~~~~y~~~~~e~~Py~~~~~~s~yh~re~dv  158 (358)
                      |.||||......  .........+....+........++..+.|+++..... +...   ............    +...
T Consensus        69 i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~----~~l~  140 (228)
T d1uf3a_          69 VPGPQDAPIWEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGGEIADE-GEPE---EHEALRYPAWVA----EYRL  140 (228)
T ss_dssp             ECCTTSCSHHHHHHHHHHHHHHCTTEEECBTSEEEETTTEEEEEECSEEESS-SCCB---SSSSCEEEHHHH----HHHH
T ss_pred             EecCCCchhhhhhhhhcccccccccccccceeeeeccCCEEEEecCCccccC-cCcc---hhhhhhhhHHHH----HHHH
Confidence            999999763221  11111112334444444444555788888887654321 1110   000100000000    0001


Q ss_pred             HHHhccCCCccEEEeCCCCCCcccCCcchhhhhhccchhhcccCCCCCcHHHHHHHHHhCCCEEEEcCCCCccceeeccC
Q 018289          159 HKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHG  238 (358)
Q Consensus       159 ~kL~~~~~~vDIlLSHdwP~gI~~~g~~~~l~~~kp~f~~~i~~~~lGS~~l~~ll~~lkPrywfsGH~H~~f~~~~~~~  238 (358)
                      ..+.......+|+++|.+|.+-..                    ...|+..+.++++..+|+|+++||.|..+.. .   
T Consensus       141 ~~l~~~~~~~~il~~H~p~~~~~~--------------------~~~~~~~~~~~~~~~~~~lvl~GH~H~~~~~-~---  196 (228)
T d1uf3a_         141 KALWELKDYPKIFLFHTMPYHKGL--------------------NEQGSHEVAHLIKTHNPLLVLVAGKGQKHEM-L---  196 (228)
T ss_dssp             GGGGGSCSCCEEEEESSCBCBTTT--------------------BTTSBHHHHHHHHHHCCSEEEECCSSCEEEE-E---
T ss_pred             HHHhhccCCceEEEEeeeccCccc--------------------cccccHHHHHHHHhcCCcEEEEcccccchhc-c---
Confidence            122334566899999999986321                    2468999999999999999999999976432 1   


Q ss_pred             CCCCeeEEEEccccCCCCCeeEEEeccC
Q 018289          239 EDSPVTKFLALDKCLPRRKFLQVFEIES  266 (358)
Q Consensus       239 ~~~~~TrFlaL~k~~~~rk~l~a~~i~~  266 (358)
                         ..|.+++.+.+..+  ..-++++..
T Consensus       197 ---g~~~~v~pG~~~~g--~y~~i~~~~  219 (228)
T d1uf3a_         197 ---GASWVVVPGDLSEG--EYSLLDLRA  219 (228)
T ss_dssp             ---TTEEEEECCBGGGT--EEEEEETTT
T ss_pred             ---CCEEEEECCccccc--eEEEEEccC
Confidence               13678887776433  345666643

PyMOL of d1uf3a_

>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}	Back information, alignment and structure

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]}	Back information, alignment and structure

>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]}	Back information, alignment and structure

>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Candida albicans [TaxId: 5476]}	Back information, alignment and structure

>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]}	Back information, alignment and structure

>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]}	Back information, alignment and structure

>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure